BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130807.4 - phase: 0
(329 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] 392 e-108
gb|AAO45752.1| pol protein [Cucumis melo] 390 e-107
emb|CAC44142.1| putative polyprotein [Cicer arietinum] 383 e-105
gb|AAQ56285.1| putative gag-pol protein [Oryza sativa (japonica ... 375 e-102
gb|AAT66771.1| putative polyprotein [Solanum demissum] 372 e-101
gb|AAV31169.1| putative polyprotein [Solanum tuberosum] 369 e-101
gb|AAL59229.1| gag-pol [Zea mays] 360 2e-98
gb|AAT39297.1| putative gag-pol protein [Solanum demissum] 360 2e-98
gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsi... 360 3e-98
gb|AAP52480.1| putative polyprotein [Oryza sativa (japonica cult... 360 3e-98
ref|NP_917371.1| Putative polyprotein [Oryza sativa (japonica cu... 360 3e-98
gb|AAP53840.1| putative gag-pol protein [Oryza sativa (japonica ... 360 4e-98
gb|AAP52168.1| putative polyprotein [Oryza sativa (japonica cult... 360 4e-98
ref|XP_472517.1| OSJNBa0011E07.12 [Oryza sativa (japonica cultiv... 360 4e-98
gb|AAX95934.1| retrotransposon protein, putative, Ty3-gypsy sub-... 359 5e-98
ref|XP_471545.1| OSJNBa0019J05.6 [Oryza sativa (japonica cultiva... 359 5e-98
gb|AAX96433.1| retrotransposon protein, putative, Ty3-gypsy sub-... 359 7e-98
gb|AAP53015.1| putative polyprotein [Oryza sativa (japonica cult... 358 9e-98
emb|CAE04932.2| OSJNBa0017P10.9 [Oryza sativa (japonica cultivar... 358 9e-98
gb|AAV43973.1| hypothetical protein [Oryza sativa (japonica cult... 358 9e-98
>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
Length = 1602
Score = 392 bits (1007), Expect = e-108
Identities = 185/345 (53%), Positives = 250/345 (71%), Gaps = 17/345 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ LP + R HDSIWV+VDR+ KSAHF+P+ + A++YI IV+LHGVP SI
Sbjct: 1251 MDFITGLPRSRRQHDSIWVIVDRMTKSAHFLPVKTTHSAEDYAKLYIQEIVRLHGVPISI 1310
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
+SDR +FT++FWKS Q LGSK+ LS+A+HPQTDGQ++RTIQ+LE +LR CV++ W
Sbjct: 1311 ISDRGAQFTAQFWKSFQKGLGSKVSLSTAFHPQTDGQAERTIQTLEDMLRACVIDFKSNW 1370
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D HLPLIEF YNNSYHSSI MAP++ALYGRRCR+P+ WFE GE+ ++GPDLVH+ EKVK
Sbjct: 1371 DDHLPLIEFAYNNSYHSSIQMAPYEALYGRRCRSPIGWFEVGEARLIGPDLVHQAMEKVK 1430
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
+I++++K +QSRQKSY D RR+ALEF+ D V+L+V+PM GV K KL+P++IGPY+
Sbjct: 1431 VIQERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPRYIGPYR 1490
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPL- 299
I +RVG+VAY + LP L+ +H VFH+S L+K + DPS ++P + V+++DNL+ E +P+
Sbjct: 1491 IVQRVGSVAYELELPQELAAVHPVFHISMLKKCIGDPSLILPTESVKIKDNLSYEEVPVQ 1550
Query: 300 ----------------VKVVWDGATGESLTWELESKMRDSYPKLF 328
VKV+W E TWE E M+ YP LF
Sbjct: 1551 ILDRQVRRLRTKDVASVKVLWRNQFVEEATWEAEEDMKKRYPHLF 1595
>gb|AAO45752.1| pol protein [Cucumis melo]
Length = 923
Score = 390 bits (1003), Expect = e-107
Identities = 193/345 (55%), Positives = 245/345 (70%), Gaps = 17/345 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ LP T RG IWVVVDRL KSAHF+P Y ++ A++Y+ IV+LHGVP SI
Sbjct: 577 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 636
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
VSDRD RFTS+FWK LQ A+G++L S+A+HPQTDGQ++R Q LE +LR C LE G+W
Sbjct: 637 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 696
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
DSHL L+EF YNNSY ++IGMAPF+ALYGR CR+P+CW E GE ++GP+LV T E ++
Sbjct: 697 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 756
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
IR +M +QSRQKSY D RRK LEF+ GD VFL+V PM GV + KL+P+F+GP++
Sbjct: 757 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 816
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLT------- 293
I ER+G VAYR+ LPP LS +HDVFHVS LRKYV DPSHV+ + +++ +NL+
Sbjct: 817 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVE 876
Query: 294 -----VETL-----PLVKVVWDGATGESLTWELESKMRDSYPKLF 328
V+TL PLVKV+W E TWE E MR YP+LF
Sbjct: 877 VLARGVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELF 921
>emb|CAC44142.1| putative polyprotein [Cicer arietinum]
Length = 655
Score = 383 bits (984), Expect = e-105
Identities = 178/252 (70%), Positives = 216/252 (85%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ LP T R +DSIWV+VDRL KSAHF+P+ Y V QL EIYI IV+LHGVPSSI
Sbjct: 403 MDFITGLPKTRRKNDSIWVIVDRLTKSAHFLPVRTTYKVDQLTEIYIAEIVRLHGVPSSI 462
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
VSDRDP+FTS FW +L +ALG+KLRLSSAYHPQTDGQ++RT QSLE LLR CVL++ G+W
Sbjct: 463 VSDRDPKFTSHFWGALHEALGTKLRLSSAYHPQTDGQTERTNQSLEDLLRACVLDDRGSW 522
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D LPLIEFTYNNS+H+SIGMAP++ALYGR+C+TPLCW++ GE++++GP++V +TT KVK
Sbjct: 523 DHVLPLIEFTYNNSFHTSIGMAPYQALYGRKCQTPLCWYKDGENMIVGPEMVQQTTAKVK 582
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
I++KMK SQ RQKSY DKRR+ LEF++GDHVFLRVTP TGVG ALKS+KLTPKFIGPYQ
Sbjct: 583 KIKEKMKTSQDRQKSYADKRRRLLEFEQGDHVFLRVTPTTGVGRALKSKKLTPKFIGPYQ 642
Query: 241 ISERVGTVAYRV 252
I R+G VAYR+
Sbjct: 643 IYARIGPVAYRI 654
>gb|AAQ56285.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
Length = 552
Score = 375 bits (963), Expect = e-102
Identities = 183/346 (52%), Positives = 241/346 (68%), Gaps = 17/346 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDFV+ LP + RG D+IWVVVDRL KSAHFIP+ LA +YI +V+LHGVP SI
Sbjct: 201 MDFVIGLPRSPRGKDAIWVVVDRLTKSAHFIPVRTTNTAHDLAPLYIKEVVRLHGVPKSI 260
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
VSDRD +F S W+SLQ A+G+K+ LS+A+HPQTDGQS+RTIQ+LE +LR CVL G W
Sbjct: 261 VSDRDSKFVSMLWQSLQRAMGTKISLSTAFHPQTDGQSERTIQTLEDMLRACVLSWKGNW 320
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
+ HL L+EF YNNSY +SI MAPF+ALYGR+C +PLCW GE +LGP++V +T++KV+
Sbjct: 321 EDHLALVEFAYNNSYQASIKMAPFEALYGRKCVSPLCWESLGERALLGPEIVEQTSKKVQ 380
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
I + M A+QSRQKSY D RR+ LEF GD V LRV+P G+ + KL+P++IGP+
Sbjct: 381 EIGQNMLAAQSRQKSYADTRRRDLEFAVGDQVLLRVSPTKGIVRFGTTGKLSPRYIGPFV 440
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVE----- 295
I+ RVG++AYR+ LP ++ +HDVFHVS LRKY+ DP H I + + V +LT+E
Sbjct: 441 ITARVGSLAYRLQLPESMNGVHDVFHVSMLRKYLRDPEHKIDLEPIMVEQDLTIECRPVR 500
Query: 296 ------------TLPLVKVVWDGATGESLTWELESKMRDSYPKLFV 329
T+ VKV+W + TWELE +M+ YP+LFV
Sbjct: 501 IFDWSERVMRRRTIKYVKVLWTNQSEREATWELEEEMKKKYPELFV 546
>gb|AAT66771.1| putative polyprotein [Solanum demissum]
Length = 1769
Score = 372 bits (954), Expect = e-101
Identities = 180/345 (52%), Positives = 240/345 (69%), Gaps = 17/345 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDFV+ LP T+RG DSIWV+VDRL KSAHF+P++ + +LA IYI +V+LHGVP SI
Sbjct: 1419 MDFVVGLPRTSRGVDSIWVIVDRLTKSAHFLPVHTTFSAERLARIYIREVVRLHGVPVSI 1478
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
+SDR +FTS FW++ Q+ LG+++ LS+++HPQTDGQS+RTIQ LE +LR CV++ GG W
Sbjct: 1479 ISDRGSQFTSSFWRAFQEELGTRVHLSTSFHPQTDGQSERTIQVLEDMLRACVMDFGGQW 1538
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
+ LPL EF YNNSYHSSI MAPF+ALYGRRCR+P+ WFES E G DL+ E ++V+
Sbjct: 1539 EQFLPLAEFAYNNSYHSSIQMAPFEALYGRRCRSPVGWFESTEPRPRGTDLLQEALDQVR 1598
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
+I+ +++ +QSR +SY D+RR+ L F GD VFLRV+PM GV + KL+P++IGP++
Sbjct: 1599 VIQDRLRTAQSRHQSYADQRRRPLRFSVGDRVFLRVSPMKGVMRFGRRGKLSPRYIGPFE 1658
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTV------ 294
I VG VAY + LPP S +H VFHVS LR+YV D SHV+ D V++ D LT
Sbjct: 1659 ILRTVGEVAYELALPPVFSAIHPVFHVSMLRRYVPDESHVLQYDAVELDDRLTFVEEPVA 1718
Query: 295 -----------ETLPLVKVVWDGATGESLTWELESKMRDSYPKLF 328
+P+VKV W E TWE E +MR+ +P LF
Sbjct: 1719 ILARDVRRLRSRAIPVVKVRWRHRPVEEATWETEQEMREQFPSLF 1763
>gb|AAV31169.1| putative polyprotein [Solanum tuberosum]
Length = 394
Score = 369 bits (947), Expect = e-101
Identities = 180/345 (52%), Positives = 240/345 (69%), Gaps = 17/345 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDFV+ LP T+RG DSIWV+VDRL KSAHF+P++ + +LA IYI +V+LHGVP SI
Sbjct: 44 MDFVVGLPRTSRGVDSIWVIVDRLTKSAHFLPVHTTFSAERLARIYIREVVRLHGVPVSI 103
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
+SDR +FTS F ++ Q+ LG+++ LS+A+HPQTDGQS+RTIQ LE +LR CV++ GG W
Sbjct: 104 ISDRGSQFTSSFLRAFQEELGTRVHLSTAFHPQTDGQSERTIQVLEDMLRACVMDFGGQW 163
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D LPL EF YNNSYHSSI MAPF+ALYGRRC +P+ WFES E + G DL+ E ++V+
Sbjct: 164 DQFLPLAEFAYNNSYHSSIQMAPFEALYGRRCHSPVGWFESTEPRLRGTDLLQEALDQVR 223
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
+I+ +++ +QSR +SY D+RR+ L F GD VFLRV+PM GV + KL+P++IGP++
Sbjct: 224 VIQDRLRTAQSRHQSYADQRRRPLRFSVGDRVFLRVSPMKGVMRFGRRGKLSPRYIGPFE 283
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTV------ 294
I VG VAY + LPP S +H VFHVS LR+YV D SHV+ D V++ D LT
Sbjct: 284 ILRTVGEVAYELALPPVFSAIHPVFHVSMLRRYVPDESHVLQYDAVELDDRLTFVEEPVA 343
Query: 295 -----------ETLPLVKVVWDGATGESLTWELESKMRDSYPKLF 328
+P+VKV W + E TWE E +MR+ +P LF
Sbjct: 344 ILARDVRRLRSRAIPVVKVRWRHCSVEEATWETEQEMREQFPGLF 388
>gb|AAL59229.1| gag-pol [Zea mays]
Length = 1470
Score = 360 bits (925), Expect = 2e-98
Identities = 174/345 (50%), Positives = 238/345 (68%), Gaps = 17/345 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF++ LP T G+DSIWV+VDRL K AHFIP+ Y AQLAE+Y+ IV LHGVP I
Sbjct: 1122 MDFIVGLPRTRDGYDSIWVIVDRLTKVAHFIPVKTTYSGAQLAELYMSRIVCLHGVPKKI 1181
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
VSDR +FTSRFWK L +++ +KL SSAYHPQTDGQ++RT Q LE +LR C L+ G +W
Sbjct: 1182 VSDRGTQFTSRFWKRLHESMDTKLNFSSAYHPQTDGQTERTNQVLEDMLRACALKHGRSW 1241
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D LP EF+YNNSY +S+ MAPF+ALYGR+CRTPL W ++GES V GP+++ E ++V+
Sbjct: 1242 DKSLPYAEFSYNNSYQASLKMAPFEALYGRKCRTPLYWNQTGESQVFGPEILQEAEKQVQ 1301
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
+IR+ +K +QSRQKSY D RR+ L F+ GD V+L+V+PM G+ KL+P++IGP++
Sbjct: 1302 IIRENLKTAQSRQKSYADNRRRELMFEVGDFVYLKVSPMRGMKRFKVKGKLSPRYIGPFK 1361
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLP-- 298
I ER G VAY++ LP LS++HDVFHVSQL+K + P +P +++ V ++LT P
Sbjct: 1362 ILERKGEVAYQLELPDRLSDVHDVFHVSQLKKCLRVPEEQLPMEELNVNEDLTYSEYPVR 1421
Query: 299 ---------------LVKVVWDGATGESLTWELESKMRDSYPKLF 328
+ KV W + + TWE E ++R +P+LF
Sbjct: 1422 ILETSRRITRSKVINMCKVQWSHHSEDEATWEREDELRAEFPQLF 1466
>gb|AAT39297.1| putative gag-pol protein [Solanum demissum]
Length = 1438
Score = 360 bits (925), Expect = 2e-98
Identities = 162/299 (54%), Positives = 230/299 (76%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ LP + R HDSIWV+VD++ KSAHF+P+ A++Y+ IV+LHG+P SI
Sbjct: 1135 MDFITGLPKSHRQHDSIWVIVDQMTKSAHFLPVRTTNIAEDYAKLYVQEIVRLHGIPISI 1194
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
+SDR +FT++FWKS + LGSK+ LS+A++PQTDGQ++RTI +LE +LR CV++ G W
Sbjct: 1195 ISDRGAQFTAQFWKSFKKGLGSKVNLSTAFYPQTDGQAERTIHTLEDMLRACVIDFKGNW 1254
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D HLPLIEF YNNSYHSSI MAP++ALYGRRC +P+ WFE GE+ ++GPDLVH+ EKVK
Sbjct: 1255 DDHLPLIEFAYNNSYHSSIHMAPYEALYGRRCISPIGWFEVGEAQLIGPDLVHQAMEKVK 1314
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
+I++++K +QSRQKSY D R +ALEF+ D V+L+V+PM GV K KL+P++IGPY+
Sbjct: 1315 VIQERLKTAQSRQKSYIDVRTRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPQYIGPYR 1374
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPL 299
I++R+G VAY + LP L +H VFH+S L+K + DPS ++P + ++++DNL+ E +P+
Sbjct: 1375 IAKRIGNVAYELELPQELEAVHPVFHISMLKKCIGDPSLILPTESIRIKDNLSYEEIPV 1433
>gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411368|pir||G84493 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1611
Score = 360 bits (924), Expect = 3e-98
Identities = 177/346 (51%), Positives = 241/346 (69%), Gaps = 18/346 (5%)
Query: 1 MDFVMSLPNTTRG-HDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSS 59
MDFV LP + H+++WVVVDRL KSAHF+ I+ K +AE YI IV+LHG+P S
Sbjct: 1237 MDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIVRLHGIPVS 1296
Query: 60 IVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGA 119
IVSDRD RFTS+FWK+ Q ALG+++ LS+AYHPQTD QS+RTIQ+LE +LR CVL+ GG
Sbjct: 1297 IVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQSERTIQTLEDMLRACVLDWGGN 1356
Query: 120 WDSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKV 179
W+ +L L+EF YNNS+ +SIGM+P++ALYGR CRTPLCW GE + GP +V ETTE++
Sbjct: 1357 WEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDETTERM 1416
Query: 180 KMIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPY 239
K ++ K+K +Q RQKSY +KRRK LEFQ GD V+L+ G G +KL+P+++GPY
Sbjct: 1417 KFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPY 1476
Query: 240 QISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLP- 298
++ ERVG VAY++ LPP L+ H+VFHVSQLRK ++D + +++N+TVE P
Sbjct: 1477 KVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSDQEESVEDIPPGLKENMTVEAWPV 1536
Query: 299 ----------------LVKVVWDGATGESLTWELESKMRDSYPKLF 328
L+KV+W+ E TWE E+KM+ ++P+ F
Sbjct: 1537 RIMDRMTKGTRGKARDLLKVLWNCRGREEYTWETENKMKANFPEWF 1582
>gb|AAP52480.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531782|ref|NP_920193.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18657010|gb|AAL78097.1| Putative polyprotein [Oryza
sativa]
Length = 1473
Score = 360 bits (924), Expect = 3e-98
Identities = 173/345 (50%), Positives = 236/345 (68%), Gaps = 17/345 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ LP T+ GHDSIWV+VDRL K AHFIP+ Y ++LAE+Y+ IV LHGVP I
Sbjct: 1117 MDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKI 1176
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
VSDR +FTS FWK LQ+ +GSKL S+AYHPQTDGQ++R Q LE +LR C L+ GG+W
Sbjct: 1177 VSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSW 1236
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D +LP EF+YNNSY +S+ MAP++ALYGR+CRTPL W ++GE V G D++ E EKVK
Sbjct: 1237 DKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVK 1296
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
+I+++++ +QSR KSY D RR+ L F+EGD+V+LRVTP+ GV KL P+F+GPY+
Sbjct: 1297 IIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPYK 1356
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPL- 299
I R G VAY++ LP L+ +HDVFHVSQL+K + P+ + ++V+++LT P+
Sbjct: 1357 IVSRRGEVAYQLELPQSLAGVHDVFHVSQLKKCLRVPTEEANIEQIEVQEDLTYVEKPIR 1416
Query: 300 ----------------VKVVWDGATGESLTWELESKMRDSYPKLF 328
KV W + E TWE E +++ ++P LF
Sbjct: 1417 ILETSERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPYLF 1461
>ref|NP_917371.1| Putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 360 bits (924), Expect = 3e-98
Identities = 173/346 (50%), Positives = 237/346 (68%), Gaps = 17/346 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ LP T+ GHDSIWV+VDRL K AHFIP+ Y ++LAE+Y+ IV LHGVP I
Sbjct: 1119 MDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKI 1178
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
VSDR +FTS FWK LQ+ +GSKL S+AYHPQTDGQ++R Q LE +LR C L+ GG+W
Sbjct: 1179 VSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSW 1238
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D +LP EF+YNNSY +S+ MAP++ALYGR+CRTPL W ++GE V G D++ E EKVK
Sbjct: 1239 DKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVK 1298
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
+I+++++ +QSR KSY D RR+ L F+EGD+V+LRVTP+ GV KL P+F+GPY+
Sbjct: 1299 IIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPYK 1358
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPL- 299
I R G VAY++ LP L+ +H+VFHVSQL+K + P+ + ++V+++LT P+
Sbjct: 1359 IVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLEQIEVQEDLTYVEKPIR 1418
Query: 300 ----------------VKVVWDGATGESLTWELESKMRDSYPKLFV 329
KV W + E TWE E +++ ++P LFV
Sbjct: 1419 ILETSERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPYLFV 1464
>gb|AAP53840.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
gi|37534502|ref|NP_921553.1| putative gag-pol protein
[Oryza sativa (japonica cultivar-group)]
Length = 1072
Score = 360 bits (923), Expect = 4e-98
Identities = 172/345 (49%), Positives = 236/345 (67%), Gaps = 17/345 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ LP T+ GHDSIWV+VDRL K AHFIP+ Y ++LAE+Y+ IV LHGVP I
Sbjct: 716 MDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKI 775
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
VSDR +FTS FWK LQ+ +GSKL S+AYHPQ DGQ++R Q LE +LR C L+ GG+W
Sbjct: 776 VSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQIDGQTERVNQILEDMLRACALDFGGSW 835
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D +LP EF+YNNSY +S+ MAP++ALYGR+CRTPL W ++GE V G D++ E EKVK
Sbjct: 836 DKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVK 895
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
+I+++++ +QSR KSY D RR+ L F+EGD+V+LRVTP+ GV H KL P+F+GPY+
Sbjct: 896 VIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHHFHTKGKLAPRFVGPYK 955
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPL- 299
I R G VAY++ LP L+ +H+VFHVSQL+K + P+ + ++V+++LT P+
Sbjct: 956 IVSRRGEVAYQIELPQSLAGVHNVFHVSQLKKCLRVPTEEANIEQIEVQEDLTYVEKPIR 1015
Query: 300 ----------------VKVVWDGATGESLTWELESKMRDSYPKLF 328
KV W + E TWE E +++ ++P LF
Sbjct: 1016 ILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1060
>gb|AAP52168.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531158|ref|NP_919881.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22725918|gb|AAN04928.1| Putative polyprotein [Oryza
sativa] gi|20177623|gb|AAM14678.1| Putative polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 413
Score = 360 bits (923), Expect = 4e-98
Identities = 172/345 (49%), Positives = 237/345 (67%), Gaps = 17/345 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ LP T+ GHDSIWV+VDRL K AHFIP+ Y ++LAE+Y+ IV LHGVP I
Sbjct: 57 MDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKI 116
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
VSDR +FTS FWK LQ+ +GSKL S+AYHPQTD Q++R Q LE +LR C L+ GG+W
Sbjct: 117 VSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDRQTERVNQILEDMLRACALDFGGSW 176
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D +LP EF+YNNSY +S+ MAP++ALYGR+CRTPL W ++GE V G D++ E EKVK
Sbjct: 177 DKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQAGERQVFGTDILREAEEKVK 236
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
+I+++++ +QSR KSY D RR+ L F+EGD+V+LRVTP+ GV H + KL P+F+GPY+
Sbjct: 237 IIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHHFHTNGKLAPRFVGPYK 296
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPL- 299
I R G VAY++ LP L+ +H+VFHVSQL+K + P+ + ++V+++LT P+
Sbjct: 297 IVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANHEQIEVQEDLTYVEKPIR 356
Query: 300 ----------------VKVVWDGATGESLTWELESKMRDSYPKLF 328
KV W + E TWE E +++ ++P LF
Sbjct: 357 ILEIDERRTRNRVICFCKVQWSNHSEEESTWEREDELKSAHPHLF 401
>ref|XP_472517.1| OSJNBa0011E07.12 [Oryza sativa (japonica cultivar-group)]
gi|38346366|emb|CAE04203.2| OSJNBa0011E07.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1473
Score = 360 bits (923), Expect = 4e-98
Identities = 173/345 (50%), Positives = 237/345 (68%), Gaps = 17/345 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ SLP T+ GHDSIWV+VDRL K AHFIP+ Y ++LAE+Y+ IV LHGVP I
Sbjct: 1117 MDFITSLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKI 1176
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
VSDR +FTS FWK LQ+ +GSKL S+AYHPQTDGQ++R Q LE +LR C L+ GG+W
Sbjct: 1177 VSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSW 1236
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D +LP EF+YNNSY +S+ MAP++ALYGR+CRTPL W ++GE V G D++ E EKVK
Sbjct: 1237 DKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVK 1296
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
+I+++++ +QSR KSY D RR+ L F+EGD+V+LRVTP+ GV KL P+F+GPY+
Sbjct: 1297 IIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVRRFHTKGKLAPRFVGPYK 1356
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPL- 299
I R G VAY++ LP L+ +H+VFHVSQL+K + P+ + ++V+++LT P+
Sbjct: 1357 IVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANIEQIEVQEDLTYVEKPIR 1416
Query: 300 ----------------VKVVWDGATGESLTWELESKMRDSYPKLF 328
KV W + E TWE E +++ ++P LF
Sbjct: 1417 ILEINERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1461
>gb|AAX95934.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)] gi|62733144|gb|AAX95261.1|
retrotransposon protein, putative, Ty3-gypsy sub-class
[Oryza sativa (japonica cultivar-group)]
Length = 1398
Score = 359 bits (922), Expect = 5e-98
Identities = 173/345 (50%), Positives = 235/345 (67%), Gaps = 17/345 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ LP T+ GHDSIWV+VDRL K AHFIP+N Y ++LAE+Y+ IV LHGVP I
Sbjct: 1042 MDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVNTTYSGSRLAELYMARIVCLHGVPKKI 1101
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
VSDR +FTS FWK LQ+ +GSKL S+AYHPQTDGQ++R Q LE +LR C L+ GG+W
Sbjct: 1102 VSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSW 1161
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D +LP EF+YNNSY +S+ MAP++ALYGR+CRTPL W ++GE V G D++ E EKVK
Sbjct: 1162 DKNLPCAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVK 1221
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
I+++++ +QSR KSY D RR+ L F+EGD+V+LRVTP+ GV KL P+F+GPY+
Sbjct: 1222 FIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYK 1281
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPL- 299
I R G VAY++ LP L+ +H+VFHVSQL+K + P + ++V+++LT P+
Sbjct: 1282 IVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPIEEANLEQIEVQEDLTYVERPIR 1341
Query: 300 ----------------VKVVWDGATGESLTWELESKMRDSYPKLF 328
KV W + E TWE E +++ ++P LF
Sbjct: 1342 ILEIDERRTRNPVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1386
>ref|XP_471545.1| OSJNBa0019J05.6 [Oryza sativa (japonica cultivar-group)]
gi|38346421|emb|CAD40208.2| OSJNBa0019J05.6 [Oryza sativa
(japonica cultivar-group)]
Length = 1616
Score = 359 bits (922), Expect = 5e-98
Identities = 172/345 (49%), Positives = 237/345 (67%), Gaps = 17/345 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ LP T+ GHDSIWV+VDRL K AHFIP+ Y ++LAE+Y+ IV LHGVP I
Sbjct: 1260 MDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKI 1319
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
VSDR +FTS FWK LQ+ +GSKL S+AYHPQTDGQ++R Q LE +LR C L+ GG+W
Sbjct: 1320 VSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSW 1379
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D +LP EF+YNNSY +S+ MAP++ALYGR+CRTPL W ++GE V G D++ E EKVK
Sbjct: 1380 DKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVK 1439
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
+I+++++ +QSR KSY D RR+ L F+EGD+V+LRVTP+ GV KL P+F+GPY+
Sbjct: 1440 VIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYK 1499
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPL- 299
I+ R G VAY++ LP L+ +H+VFHVSQL+K + P+ + ++V+++LT P+
Sbjct: 1500 IASRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANIEQIEVQEDLTYVEKPIR 1559
Query: 300 ----------------VKVVWDGATGESLTWELESKMRDSYPKLF 328
KV W + E TWE E +++ ++P LF
Sbjct: 1560 ILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1604
>gb|AAX96433.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1636
Score = 359 bits (921), Expect = 7e-98
Identities = 172/345 (49%), Positives = 237/345 (67%), Gaps = 17/345 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ LP T+ GHDSIWV+VDRL K AHFIP+ Y ++LAE+Y+ IV LHGVP I
Sbjct: 1280 MDFITGLPRTSLGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKI 1339
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
VSDR +FTS+FWK LQ+ +GSKL S+AYHPQTDGQ++R Q LE +LR C L+ GG+W
Sbjct: 1340 VSDRGSQFTSKFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSW 1399
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D +LP EF+YNNSY +S+ MAP++ALYGR+CRTPL W ++GE V G D++ E EKVK
Sbjct: 1400 DKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVK 1459
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
+I+++++ +QSR KSY D RR+ L F EGD+V+LRVTP+ GV + KL P+F+GPY+
Sbjct: 1460 IIQERLRVAQSRHKSYADNRRRDLSFDEGDYVYLRVTPLRGVHRFHTNGKLAPRFVGPYK 1519
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPL- 299
I R G VAY++ LP L+ +H+VFHVSQL+K + P+ + ++V+++LT P+
Sbjct: 1520 IVSRRGEVAYQLELPQSLAGIHNVFHVSQLKKCLRVPTEEANLEQIEVQEDLTYVEKPIR 1579
Query: 300 ----------------VKVVWDGATGESLTWELESKMRDSYPKLF 328
KV W + E TWE E +++ ++P LF
Sbjct: 1580 ILKIDERRTRNRVIHFCKVQWSNHSEEESTWEREDELKSAHPHLF 1624
>gb|AAP53015.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532852|ref|NP_920728.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22655733|gb|AAN04150.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|16905211|gb|AAL31081.1| putative polyprotein [Oryza
sativa]
Length = 1416
Score = 358 bits (920), Expect = 9e-98
Identities = 172/345 (49%), Positives = 235/345 (67%), Gaps = 17/345 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ LP T+ GHDSIWV+VDRL K AHFIP+ Y ++LAE+Y+ IV LHGVP I
Sbjct: 1060 MDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKI 1119
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
VSDR +FTS FWK LQ+ +GSKL S+AYHPQTDGQ++R Q LE +LR C L+ GG+W
Sbjct: 1120 VSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSW 1179
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D +LP EF+YNNSY +S+ MAP++ALYGR+CRTPL W ++GE V G D++ E EKVK
Sbjct: 1180 DKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVK 1239
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
+I+++++ +QSR KSY D RR+ L F+EGD+V++RVTP GV KL P+F+GPY+
Sbjct: 1240 IIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYIRVTPFRGVHRFHTKGKLAPRFVGPYK 1299
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPL- 299
I R G VAY++ LP L+ +H+VFHVSQL+K + P+ D ++V+++LT P+
Sbjct: 1300 IVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLDQIEVQEDLTYVEKPIR 1359
Query: 300 ----------------VKVVWDGATGESLTWELESKMRDSYPKLF 328
KV W + E TWE E +++ ++P LF
Sbjct: 1360 ILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1404
>emb|CAE04932.2| OSJNBa0017P10.9 [Oryza sativa (japonica cultivar-group)]
gi|50921971|ref|XP_471346.1| OSJNBa0017P10.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1752
Score = 358 bits (920), Expect = 9e-98
Identities = 172/345 (49%), Positives = 236/345 (67%), Gaps = 17/345 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ LP T+ GHDSIWV+VDRL K AHFIP+ Y ++LAE+Y+ IV LHGVP I
Sbjct: 1396 MDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKI 1455
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
VSDR +FTS FWK LQ+ +GSKL S+AYHPQTDGQ++R Q LE +LR C L+ GG+W
Sbjct: 1456 VSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSW 1515
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D +LP EF+YNNSY +S+ MAP++ALYGR+CRTPL W ++GE V G D++ E EKVK
Sbjct: 1516 DKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVK 1575
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
+I+++++ +QSR KSY D RR+ L F+EGD+V+LRVTP+ GV KL P+F+GPY+
Sbjct: 1576 IIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYK 1635
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPL- 299
I R G VAY++ LP L+ +H+VFHVSQL+K + P+ + ++V+++LT P+
Sbjct: 1636 IVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLEQIEVQEDLTYVEKPIH 1695
Query: 300 ----------------VKVVWDGATGESLTWELESKMRDSYPKLF 328
KV W + E TWE E +++ ++P LF
Sbjct: 1696 ILEIDERRTRNRVIRFCKVQWSNHSEEESTWEREEELKSAHPHLF 1740
>gb|AAV43973.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 846
Score = 358 bits (920), Expect = 9e-98
Identities = 172/345 (49%), Positives = 236/345 (67%), Gaps = 17/345 (4%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ LP T+ GHDSIWV+VDRL K AHFIP+ Y ++LAE+Y+ IV LHGVP I
Sbjct: 490 MDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKI 549
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
VSDR +FTS FWK LQ+ +GSKL S+AYHPQTDGQ++R Q LE +LR C L+ GG+W
Sbjct: 550 VSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSW 609
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
D +LP EF+YNNSY +S+ MAP++ALYGR+CRTPL W ++GE V G D++ E EKVK
Sbjct: 610 DKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVK 669
Query: 181 MIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPYQ 240
+I+++++ +QSR KSY D RR+ L F+EGD+V+LRVTP+ GV KL P+F+GPY+
Sbjct: 670 IIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYK 729
Query: 241 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPL- 299
I R G VAY++ LP L+ +H+VFHVSQL+K + P+ + ++V+++LT P+
Sbjct: 730 IVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLEQIEVQEDLTYVEKPIR 789
Query: 300 ----------------VKVVWDGATGESLTWELESKMRDSYPKLF 328
KV W + E TWE E +++ ++P LF
Sbjct: 790 ILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 834
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,580,373
Number of Sequences: 2540612
Number of extensions: 23124812
Number of successful extensions: 55423
Number of sequences better than 10.0: 1715
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 52252
Number of HSP's gapped (non-prelim): 1953
length of query: 329
length of database: 863,360,394
effective HSP length: 128
effective length of query: 201
effective length of database: 538,162,058
effective search space: 108170573658
effective search space used: 108170573658
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)
Medicago: description of AC130807.4