BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130806.3 - phase: 0
(320 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [... 137 5e-31
gb|AAO45751.1| gag-protease polyprotein [Cucumis melo] 129 1e-28
emb|CAC44110.1| gag polyprotein [Cicer arietinum] 119 1e-25
gb|AAM00970.1| Putative retroelement [Oryza sativa] 117 6e-25
gb|AAP53499.1| putative polyprotein [Oryza sativa (japonica cult... 116 8e-25
emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar... 116 8e-25
gb|AAT81704.1| putative retrotransposon protein [Oryza sativa (j... 115 2e-24
gb|AAP53838.1| putative gag-pol protein [Oryza sativa (japonica ... 114 5e-24
ref|XP_470061.1| putative polyprotein [Oryza sativa (japonica cu... 114 5e-24
gb|AAX94938.1| retrotransposon protein, putative, Ty3-gypsy sub-... 110 5e-23
gb|AAP52162.1| putative retroelement [Oryza sativa (japonica cul... 110 7e-23
gb|AAM74314.2| Putative retroelement [Oryza sativa (japonica cul... 110 7e-23
gb|AAM14672.1| Putative polyprotein [Oryza sativa (japonica cult... 110 7e-23
gb|AAM01095.1| Putative retroelement [Oryza sativa] 110 7e-23
emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar... 108 2e-22
gb|AAX95934.1| retrotransposon protein, putative, Ty3-gypsy sub-... 108 2e-22
emb|CAE02516.2| OSJNBb0003A12.3 [Oryza sativa (japonica cultivar... 108 2e-22
gb|AAT81665.1| putative retrotransposon protein [Oryza sativa (j... 108 3e-22
gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cul... 107 5e-22
gb|AAQ56328.1| putative gag-pol polyprotein [Oryza sativa (japon... 107 5e-22
>gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa
(japonica cultivar-group)] gi|37533358|ref|NP_920981.1|
putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza
sativa (japonica cultivar-group)]
gi|21327374|gb|AAM48279.1| Putative 22 kDa kafirin
cluster; Ty3-Gypsy type [Oryza sativa (japonica
cultivar-group)] gi|18767374|gb|AAL79340.1| Putative 22
kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
Length = 1230
Score = 137 bits (344), Expect = 5e-31
Identities = 78/250 (31%), Positives = 132/250 (52%), Gaps = 9/250 (3%)
Query: 37 LETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVS 96
L F + PPTF G +P A+ W+ +E+ F M T+ +K+ + T+ L +WW +
Sbjct: 71 LGEFQKLKPPTFSGTANPLEAEEWIVAMEKSFEAMGCTDKEKIIYATYMLQSSAFEWWDA 130
Query: 97 LLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAK 156
+ + +TW +F+ F +YFPE V+ KE EFLELKQGN S+ EY +F LA+
Sbjct: 131 HKKSYSER-IFITWELFKEAFYKKYFPESVKRMKEKEFLELKQGNKSVAEYEIEFSRLAR 189
Query: 157 FYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDDTKAHYKIVN 216
F P + T+ K +FE+GLR +KR + ++ +F E+V+ ++ E K +++
Sbjct: 190 FAPEFV--QTDGSKARRFESGLRQPLKRRVEAFELTIFREVVSKAQLLE---KGYHE--- 241
Query: 217 ERKTKGQQSRPKPYSAPADKGKQRMVEDRRPKKKDALAEIICFNCGEKGHKSNACPSEIK 276
+R GQ + + P ++G+ R + ++K + + + H + CP+
Sbjct: 242 QRIEHGQPQKKFKTNNPQNQGRFRGNYSGQMQRKSSENQGRKCPICQGSHVPSICPNCWG 301
Query: 277 RCFRCGKKGH 286
RCF CG+ GH
Sbjct: 302 RCFECGEAGH 311
>gb|AAO45751.1| gag-protease polyprotein [Cucumis melo]
Length = 429
Score = 129 bits (324), Expect = 1e-28
Identities = 92/301 (30%), Positives = 146/301 (47%), Gaps = 17/301 (5%)
Query: 30 VTAEMRMLETFMRTHPPTFKGRY-DPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAE 88
++AE + L F + +P TF G DP AQ WL +E +FR M+ EDQKV+ L +
Sbjct: 53 LSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTD 112
Query: 89 EGDDWWVSLLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYA 148
G WW + L D + +TW F+ F +++F +R K EFL L+QG+M++ +Y
Sbjct: 113 RGTAWWETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYD 172
Query: 149 AKFVELAKFYPHYAAETTEFLKCIKFENGLRADI-------KRAIGYQQIRVFSELVNSC 201
A+F L++F P A TE + KF GLR DI + A +R+ +L
Sbjct: 173 AEFDMLSRFAPEMIA--TEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQE 230
Query: 202 RIYEDDTKAHYKIVNERKTKGQQSRPKPYSAPADKGKQRMVEDRRPKKKDAL-AEIICFN 260
R T +++ QQ P P G+ R + + + +A + +C
Sbjct: 231 RANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRPGGEFRSFQQKPFEAGEAARGKPLCTT 290
Query: 261 CGEKGHKSNACPSEIKRCFRCGKKGHKSNAEIICFN--IQHEGR-ASHRGRSPA-NRSSA 316
CG+ H C + CF+C ++GH ++ + Q++G A H+GR+ A NR+ A
Sbjct: 291 CGK--HHLGRCLFGTRTCFKCRQEGHTADRCPLRVTGIAQNQGAGAPHQGRAFATNRTEA 348
Query: 317 E 317
E
Sbjct: 349 E 349
>emb|CAC44110.1| gag polyprotein [Cicer arietinum]
Length = 277
Score = 119 bits (298), Expect = 1e-25
Identities = 77/251 (30%), Positives = 120/251 (47%), Gaps = 5/251 (1%)
Query: 2 AGSNDAALVAALQAVAQAVGQWPNANAGVTAEMRMLETFMRTHPPTFKGRYDPDGAQTWL 61
A +N AA VAA A AE R L F R +PP FKG + A W+
Sbjct: 21 AMNNMAASVAAQTAAKTQRDLEKRGREIRAAESRGLVDFRRYNPPKFKGDEGSEKADQWI 80
Query: 62 KEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVSLLPTLKQDGAAVTWAVFRREFLSRY 121
+E+E++F ++ KV + T+ L + + WW S + V W F+R+FL +Y
Sbjct: 81 QEVEKIFDMINCQAGVKVSYATYMLLGDAEYWWRSARLLMGAAHEEVNWESFKRKFLDKY 140
Query: 122 FPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAKFYPHYAAETTEFLKCIKFENGLRAD 181
FP R K +FL+L QG++++ EYAAKF L++ + + E E C +F++GL+ +
Sbjct: 141 FPMSTRTKLGDDFLKLHQGSLTVGEYAAKFESLSRHFRFFREEIDEPFMCHRFQDGLKYE 200
Query: 182 IKRAIGYQQIRVFSELVNSCRIYEDDTKAHYKIVNERKTKG-----QQSRPKPYSAPADK 236
I+ ++ I+ F LV CR ED V + G Q+R K + P ++
Sbjct: 201 IQDSVLPLGIQRFQALVEKCREVEDMKNKRASRVGNFNSGGPSRATYQNRGKQVAKPYNR 260
Query: 237 GKQRMVEDRRP 247
+ RP
Sbjct: 261 PQNNNGGPSRP 271
>gb|AAM00970.1| Putative retroelement [Oryza sativa]
Length = 1425
Score = 117 bits (292), Expect = 6e-25
Identities = 81/247 (32%), Positives = 114/247 (45%), Gaps = 19/247 (7%)
Query: 37 LETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVS 96
L F+ PPTF +P A WL IE+ ++Q + +KV F THQL WW +
Sbjct: 92 LPEFLLVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDN 151
Query: 97 LLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAK 156
+ T + G VTWA F R F P+ V +K+ EF L QGN ++TEY +F LA+
Sbjct: 152 HMAT-RPPGTEVTWAEFCRSFKKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLAR 210
Query: 157 FYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYED-----DTKAH 211
+ P E K KF GL ++ + F LV+ ED D K++
Sbjct: 211 YAPEDVRTDAE--KQEKFLAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNKMDRKSN 268
Query: 212 Y---KIVNERKTKGQQSR---PKPYSAPADKGKQRMVEDRRPKKKDALAEIICFNCGEKG 265
+ ++ GQ +R P+P APA G + KK+ CFNCGE G
Sbjct: 269 FPQGASGSQNHHGGQPNRGAAPRPPMAPAQSG-----PSAQAKKETGAKPGSCFNCGELG 323
Query: 266 HKSNACP 272
H ++ CP
Sbjct: 324 HFADKCP 330
>gb|AAP53499.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37533820|ref|NP_921212.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18652528|gb|AAL77161.1| Putative polyprotein [Oryza
sativa]
Length = 1731
Score = 116 bits (291), Expect = 8e-25
Identities = 78/242 (32%), Positives = 110/242 (45%), Gaps = 20/242 (8%)
Query: 37 LETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVS 96
L F+R PPTF +P A WL IE+ ++Q + +KV F THQL WW +
Sbjct: 352 LPEFLRVRPPTFSSTTNPIEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDN 411
Query: 97 LLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAK 156
+ T + G VTWA F R F P+ V +K+ EF L QGN ++TEY +F LA+
Sbjct: 412 HMAT-RPPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLAR 470
Query: 157 FYPHYAAETTEFLKCIKFENGLRADIKRAI---GYQQIRVFSELVNSCRIYEDDTKAHYK 213
+ P E K KF GL ++ + Y NS ++ +
Sbjct: 471 YAPEDVRTDAE--KQEKFMAGLDDELTNQLISGDYADFERLHRPFNSSNFHQGSSG---- 524
Query: 214 IVNERKTKGQQSR---PKPYSAPADKGKQRMVEDRRPKKKDALAEIICFNCGEKGHKSNA 270
++ GQ +R P+P APA G + KK+ CFNCGE GH ++
Sbjct: 525 --SQNHHGGQPNRGAAPRPPMAPAQSG-----PPAQAKKETGAKPGSCFNCGELGHFADK 577
Query: 271 CP 272
CP
Sbjct: 578 CP 579
>emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar-group)]
gi|50930427|ref|XP_474741.1| OSJNBa0059D20.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 116 bits (291), Expect = 8e-25
Identities = 84/297 (28%), Positives = 126/297 (42%), Gaps = 41/297 (13%)
Query: 13 LQAVAQAVGQWPNANAGVTAEMRMLETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQ 72
LQA+A G ++ G FMRT PPTF +P A+ WL+ IE+ +++
Sbjct: 33 LQAIASNQGNRGGSSFG---------EFMRTKPPTFATAEEPMDAEDWLRIIEKKLTLVR 83
Query: 73 YTEDQKVRFGTHQLAEEGDDWWVSLLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEI 132
E KV F +QL DWW + ++D W F F + P V K+
Sbjct: 84 VREADKVIFAANQLEGPAGDWWDTYKEAREEDAGEPNWEEFTTAFRDNFVPAAVMRMKKN 143
Query: 133 EFLELKQGNMSMTEYAAKFVELAKFYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIR 192
EF +L+QGN ++ EY +F +LA++ A+ E K KF GL +++ + Q
Sbjct: 144 EFRKLRQGNTTVQEYLNRFTQLARYATRDLADEEE--KIDKFIEGLNDELRGPMIGQDHD 201
Query: 193 VFSELVNSCRIYEDDTKAHYKIVNERKTKGQQSRPKPYSAPADKG--------------- 237
F L+N E+D K + + RK + +RP + KG
Sbjct: 202 SFQSLINKVVRLENDRKV---VEHNRKRRLAMNRPPQTAPQRPKGTTPSAWRPTVVTTSR 258
Query: 238 --------KQRMVEDRRPKKKDALAEII----CFNCGEKGHKSNACPSEIKRCFRCG 282
+ +++R P A + CFNCGE GH +N CP K R G
Sbjct: 259 PAASSNFHRPVTIQNRAPTPNQAATGSVRPGSCFNCGEYGHFANKCPHPNKTPIRTG 315
>gb|AAT81704.1| putative retrotransposon protein [Oryza sativa (japonica
cultivar-group)]
Length = 626
Score = 115 bits (287), Expect = 2e-24
Identities = 83/297 (27%), Positives = 125/297 (41%), Gaps = 41/297 (13%)
Query: 13 LQAVAQAVGQWPNANAGVTAEMRMLETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQ 72
LQA+A G ++ G FMRT PPTF +P A+ WL+ IE+ +++
Sbjct: 33 LQAIANNQGNRGGSSFG---------EFMRTKPPTFATAEEPMDAKDWLRIIEKKLTLVR 83
Query: 73 YTEDQKVRFGTHQLAEEGDDWWVSLLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEI 132
E KV F +QL DWW + ++D +W F F + P V K+
Sbjct: 84 VREADKVIFAVNQLEGPAGDWWDTYKEAREEDAGEPSWEEFTTAFRDNFMPAAVMRMKKN 143
Query: 133 EFLELKQGNMSMTEYAAKFVELAKFYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIR 192
EF ++QGN ++ EY +F +LA++ A+ E K KF GL +++ + Q
Sbjct: 144 EFRRVRQGNTTIQEYLNRFTQLARYATGDLADEEE--KIDKFIEGLNDELRGPMIGQDHD 201
Query: 193 VFSELVNSCRIYEDDTKAHYKIVNERKTKGQQSRPKPYSAPADKG------KQRMVEDRR 246
F L+N E+D K + + RK + +RP + KG + +V R
Sbjct: 202 SFQSLINKVVRLENDRKV---VEHNRKRRLAMNRPPQVAPQCPKGTTSSGWRPTVVTTNR 258
Query: 247 PKKKDALAEII---------------------CFNCGEKGHKSNACPSEIKRCFRCG 282
P ++ CFNCGE GH +N CP K R G
Sbjct: 259 PTAPSNFHRLVTTQTQAPTPNQAATGSVRPGSCFNCGEYGHFANKCPHPNKTPIRTG 315
Score = 73.9 bits (180), Expect = 6e-12
Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 27/251 (10%)
Query: 57 AQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVSLLPTLKQDGAAVTWAVFRRE 116
A WL +E++ ++Q T+ +KV F +HQL +WW + +G +TW F +
Sbjct: 334 AGDWLHVVEKL-ELLQCTDQEKVVFASHQLQGPASEWWDHFRMN-RAEGQPITWEEFTKG 391
Query: 117 FLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAKFYPHYAAETTEFLKCIKFEN 176
F + P V K+ EF LKQ + ++ EY +F LA++ P E + KF
Sbjct: 392 FNKTHIPAGVVALKKREFRTLKQKDRTVAEYLHEFNRLARYAPEDVRTDEE--RQEKFLE 449
Query: 177 GLRADIKRAIGYQQIRVFSELVNSCRIYE------DDTKAHYKIVNERKTKGQQSRPKP- 229
GL+ ++ + F +LV+ E D+ K + E + Q+ R KP
Sbjct: 450 GLKDELSVTLISHDYVDFQQLVDKAIRLEDKKNRIDNRKRKMTVFQEAQGSSQRQRIKPL 509
Query: 230 -YSAPADKG-------------KQRMVEDRRPKKKDALAEIICFNCGEKGHKSNACPSEI 275
P+ G K E + + A ++ ++ ++N+ E
Sbjct: 510 QIGEPSSAGQGQSQQLNIGGEIKSETNESNKVNIEQANQPVLVQQ--DQSQENNSSGREQ 567
Query: 276 KRCFRCGKKGH 286
+ CF C K GH
Sbjct: 568 QVCFNCYKPGH 578
>gb|AAP53838.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
gi|37534498|ref|NP_921551.1| putative gag-pol protein
[Oryza sativa (japonica cultivar-group)]
Length = 1470
Score = 114 bits (284), Expect = 5e-24
Identities = 84/300 (28%), Positives = 126/300 (42%), Gaps = 31/300 (10%)
Query: 7 AALVAALQAVAQAVGQWPNANAGVTAEMRMLETFMRTHPPTFKGRYDPDGAQTWLKEIER 66
A ++A + QA+ G++ FMRT PPTF +P A+ WL+ IE+
Sbjct: 23 AGIMATQTQLLQAIANNQGNRGGLS-----FGEFMRTKPPTFATAEEPMDAEDWLRIIEK 77
Query: 67 VFRVMQYTEDQKVRFGTHQLAEEGDDWWVSLLPTLKQDGAAVTWAVFRREFLSRYFPEDV 126
+++ E KV F +QL DWW + ++D W F F + P V
Sbjct: 78 KLTLVRVREADKVIFAANQLEGPAGDWWDTYKEAREEDAGEPNWEEFTTAFRDNFVPAAV 137
Query: 127 RGKKEIEFLELKQGNMSMTEYAAKFVELAKFYPHYAAETTEFLKCIKFENGLRADIKRAI 186
K+ EF L+QGN ++ EY +F +LA++ A+ E K KF GL +++ +
Sbjct: 138 MRMKKNEFRRLRQGNTTVQEYLNRFTQLARYATRDLADEEE--KIDKFIEGLNDELRGPM 195
Query: 187 GYQQIRVFSELVNSCRIYEDDTKA-----HYKIVNERKTKGQQSRPK------------P 229
Q F L+N E+D K ++ R + RPK
Sbjct: 196 IGQDHDSFQSLINKVVRLENDRKVVEHNRKRRLAMNRTPQTAPQRPKWTTSSAWRPTVVT 255
Query: 230 YSAPADKG---KQRMVEDRRPKKKDALAEII----CFNCGEKGHKSNACPSEIKRCFRCG 282
S PA + +++R P A + CFNCGE GH +N CP K R G
Sbjct: 256 TSRPAASSNFHRPVTIQNRAPAPNQAATGSVRPGSCFNCGEYGHFANKCPHPNKTPIRTG 315
>ref|XP_470061.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|40786577|gb|AAR89852.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1312
Score = 114 bits (284), Expect = 5e-24
Identities = 84/297 (28%), Positives = 124/297 (41%), Gaps = 41/297 (13%)
Query: 13 LQAVAQAVGQWPNANAGVTAEMRMLETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQ 72
LQA+A G ++ G FMRT PPTF +P A+ WL+ IE+ +++
Sbjct: 33 LQAIANNQGNRGGSSFG---------EFMRTKPPTFTTAEEPMDAEDWLRIIEKKLTLVR 83
Query: 73 YTEDQKVRFGTHQLAEEGDDWWVSLLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEI 132
E KV F +QL DWW + ++D W F F + P V K+
Sbjct: 84 VREADKVIFAANQLEGPAGDWWDTYKEAREEDAGEPNWEEFTTAFRDNFVPAAVMRMKKN 143
Query: 133 EFLELKQGNMSMTEYAAKFVELAKFYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIR 192
EF L+QGN ++ EY +F +LA++ A+ E K KF GL +++ + Q
Sbjct: 144 EFRRLRQGNTTIQEYLNRFTQLARYATGDLADGEE--KIDKFIEGLNDELRGPMIGQDHD 201
Query: 193 VFSELVNSCRIYEDDTKAHYKIVNERKTKGQQSR------PKPYSAPADKGKQRMVEDRR 246
F L+N E+D K + + RK + +R +P A + + K +V R
Sbjct: 202 SFQSLINKVVRLENDRKV---VEHNRKRRLAMNRLPQVAPQRPKGATSSEWKPTVVTTNR 258
Query: 247 PKKKDALAEII---------------------CFNCGEKGHKSNACPSEIKRCFRCG 282
P + CFNCGE GH +N CP K R G
Sbjct: 259 PATSSNFLRPVTIQNRAPAPHQATTGSVRPGSCFNCGEYGHFANKCPHPNKTPIRTG 315
>gb|AAX94938.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1436
Score = 110 bits (275), Expect = 5e-23
Identities = 82/294 (27%), Positives = 127/294 (42%), Gaps = 35/294 (11%)
Query: 13 LQAVAQAVGQWPNANAGVTAEMRMLETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQ 72
LQA+A G ++ G FMRT PPTF +P A+ WL+ IE+ +++
Sbjct: 33 LQAIANNQGNRGRSSFG---------EFMRTKPPTFTTADEPMEAEDWLRIIEKKLTLVR 83
Query: 73 YTEDQKVRFGTHQLAEEGDDWWVSLLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEI 132
E KV F +QL D W + ++D TW F F + P V K+
Sbjct: 84 VREADKVIFAVNQLEGPAGDRWDTYKEAREEDAGEPTWEEFTAAFQENFVPAAVMRMKKN 143
Query: 133 EFLELKQGNMSMTEYAAKFVELAKFYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIR 192
EF ++QGN ++ EY +F +LA++ A+ E K KF GL +++ + Q
Sbjct: 144 EFRRMRQGNTTVQEYLNRFTQLARYAIGDLADEEE--KIDKFIEGLNDELRGPMIGQDHE 201
Query: 193 VFSELVNSCRIYEDDTKA-----HYKIVNERKTKGQQSR---------------PKPYSA 232
F L+N E+D + ++ R +G R P +A
Sbjct: 202 SFQSLINKVVRLENDQRTVEHNHKRRLAMNRPPQGVPQRLKGATSSGWKPPIVAPNRPAA 261
Query: 233 PADKGKQRMVEDRRP----KKKDALAEIICFNCGEKGHKSNACPSEIKRCFRCG 282
P++ + ++++R P A + CFNCGE GH +N CP K R G
Sbjct: 262 PSNFNRPVVIQNRTPTPTLAAPGAKKNVDCFNCGEYGHYANNCPHPRKTPVRTG 315
>gb|AAP52162.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531146|ref|NP_919875.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22725913|gb|AAN04923.1| Putative retroelement [Oryza
sativa]
Length = 1729
Score = 110 bits (274), Expect = 7e-23
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 7/240 (2%)
Query: 37 LETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVS 96
L F+R PP F +P A WL IE+ ++Q T+ +KV F +HQL +WW
Sbjct: 449 LAEFLRVRPPVFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWW-D 507
Query: 97 LLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAK 156
+ +TW F F + P V K+ EF L QG+ S+TEY +F LA+
Sbjct: 508 HFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLAR 567
Query: 157 FYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDD----TKAHY 212
+ P E + KF GL ++ + F +LV+ ED +
Sbjct: 568 YAPEDVRNDEE--RQEKFLEGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKR 625
Query: 213 KIVNERKTKGQQSRPKPYSAPADKGKQRMVEDRRPKKKDALAEIICFNCGEKGHKSNACP 272
+I + + +G +P+ P + + + K++ ++CFNCG+ GH ++ CP
Sbjct: 626 RIAHFKAQQGSSQKPRLTLGPQSMPQGASTQQQPAKREQGSKPMVCFNCGDPGHYADKCP 685
>gb|AAM74314.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1223
Score = 110 bits (274), Expect = 7e-23
Identities = 77/267 (28%), Positives = 116/267 (42%), Gaps = 19/267 (7%)
Query: 37 LETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVS 96
L F R PPTF +P A WL IE+ ++Q TE +KV F +HQL +WW
Sbjct: 130 LADFQRVRPPTFSSTTNPVEAGDWLHAIEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDH 189
Query: 97 LLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAK 156
+ G +TW F F + P V K+ EF L QG+ S+ EY F LA+
Sbjct: 190 FRQN-RAVGEPITWREFTAAFKKTHIPSGVVALKKREFRALNQGSCSVIEYLHDFNRLAR 248
Query: 157 FYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDDTKAHYKIVN 216
+ P E + KF GL ++ A+ + R F +LV+ ED Y +
Sbjct: 249 YAPEDVRTDEE--RQEKFLEGLNDELSYALMAMEYRDFQQLVDKAIRQED----KYNRME 302
Query: 217 ERKTKGQQSRPKPYSAPADKGKQRMVEDRRPKKKDALAEIICFNCGEKGHKSNACPSEIK 276
++K + A K +Q +++ +K+ +CFNCG GH ++ CP
Sbjct: 303 QKKRR----------AAHFKAQQAPTQNQPVRKEQGSKPGVCFNCGHPGHYADKCPK--A 350
Query: 277 RCFRCGKKGHKSNAEIICFNIQHEGRA 303
R + + SNA + + H A
Sbjct: 351 RRVKNAPVQNNSNATALKARVNHVAAA 377
>gb|AAM14672.1| Putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1342
Score = 110 bits (274), Expect = 7e-23
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 7/240 (2%)
Query: 37 LETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVS 96
L F+R PP F +P A WL IE+ ++Q T+ +KV F +HQL +WW
Sbjct: 62 LAEFLRVRPPVFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWW-D 120
Query: 97 LLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAK 156
+ +TW F F + P V K+ EF L QG+ S+TEY +F LA+
Sbjct: 121 HFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLAR 180
Query: 157 FYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDD----TKAHY 212
+ P E + KF GL ++ + F +LV+ ED +
Sbjct: 181 YAPEDVRNDEE--RQEKFLEGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKR 238
Query: 213 KIVNERKTKGQQSRPKPYSAPADKGKQRMVEDRRPKKKDALAEIICFNCGEKGHKSNACP 272
+I + + +G +P+ P + + + K++ ++CFNCG+ GH ++ CP
Sbjct: 239 RIAHFKAQQGSSQKPRLTLGPQSMPQGASTQQQPAKREQGSKPMVCFNCGDPGHYADKCP 298
>gb|AAM01095.1| Putative retroelement [Oryza sativa]
Length = 1240
Score = 110 bits (274), Expect = 7e-23
Identities = 77/267 (28%), Positives = 116/267 (42%), Gaps = 19/267 (7%)
Query: 37 LETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVS 96
L F R PPTF +P A WL IE+ ++Q TE +KV F +HQL +WW
Sbjct: 130 LADFQRVRPPTFSSTTNPVEAGDWLHAIEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDH 189
Query: 97 LLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAK 156
+ G +TW F F + P V K+ EF L QG+ S+ EY F LA+
Sbjct: 190 FRQN-RAVGEPITWREFTAAFKKTHIPSGVVALKKREFRALNQGSCSVIEYLHDFNRLAR 248
Query: 157 FYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDDTKAHYKIVN 216
+ P E + KF GL ++ A+ + R F +LV+ ED Y +
Sbjct: 249 YAPEDVRTDEE--RQEKFLEGLNDELSYALMAMEYRDFQQLVDKAIRQED----KYNRME 302
Query: 217 ERKTKGQQSRPKPYSAPADKGKQRMVEDRRPKKKDALAEIICFNCGEKGHKSNACPSEIK 276
++K + A K +Q +++ +K+ +CFNCG GH ++ CP
Sbjct: 303 QKKRR----------AAHFKAQQAPTQNQPVRKEQGSKPGVCFNCGHPGHYADKCPK--A 350
Query: 277 RCFRCGKKGHKSNAEIICFNIQHEGRA 303
R + + SNA + + H A
Sbjct: 351 RRVKNAPVQNNSNATALKARVNHVAAA 377
>emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar-group)]
gi|50922727|ref|XP_471724.1| OSJNBa0023J03.1 [Oryza
sativa (japonica cultivar-group)]
Length = 1827
Score = 108 bits (271), Expect = 2e-22
Identities = 81/281 (28%), Positives = 109/281 (37%), Gaps = 48/281 (17%)
Query: 37 LETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVS 96
L F+R PPTF +P A WL IE+ ++Q + +KV F THQL WW +
Sbjct: 398 LPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDN 457
Query: 97 LLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAK 156
+ T + G VTWA F R F P+ V +K+ EF L QGNM++TEY +F LA+
Sbjct: 458 HMAT-RPPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNMTVTEYLHEFNRLAR 516
Query: 157 FYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDDTK---AHYK 213
+ P E K KF GL ++ + F LV+ ED K
Sbjct: 517 YAPEDVRTDAE--KQEKFMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNKMDRKRK 574
Query: 214 IVNERKTKGQQSRPKPYSAPADKGKQRMVEDRRP-------------------------- 247
R +G Q RP+ +V RP
Sbjct: 575 AAQFRSNQGSQHRPRFTPGQQGGPTTMIVRQHRPFNSSNFHQGTSGSQNHQGGQPNRGAA 634
Query: 248 ----------------KKKDALAEIICFNCGEKGHKSNACP 272
KK+ CFNCGE GH ++ CP
Sbjct: 635 PRPPMAPAQSAQPAQAKKETGAKPGSCFNCGELGHFADKCP 675
>gb|AAX95934.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
gi|62733144|gb|AAX95261.1| retrotransposon protein,
putative, Ty3-gypsy sub-class [Oryza sativa (japonica
cultivar-group)]
Length = 1398
Score = 108 bits (270), Expect = 2e-22
Identities = 66/240 (27%), Positives = 105/240 (43%), Gaps = 7/240 (2%)
Query: 37 LETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVS 96
L F R PP F +P A WL IE+ ++Q T+ +KV F +HQL +WW
Sbjct: 61 LAKFFRVRPPIFSSTINPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWW-D 119
Query: 97 LLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAK 156
+ +TW F F + P V K+ EF L QG+ S+TEY +F LA+
Sbjct: 120 HFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKREFRSLTQGSRSVTEYLHEFNRLAR 179
Query: 157 FYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDD----TKAHY 212
+ P E + KF GL ++ + F +LV+ ED +
Sbjct: 180 YAPEDVRTDEE--RQEKFLEGLNDELSYPLMIGDYPDFHKLVDKAIRQEDKYNRMEQKKR 237
Query: 213 KIVNERKTKGQQSRPKPYSAPADKGKQRMVEDRRPKKKDALAEIICFNCGEKGHKSNACP 272
+I + +G +P+ P + + + K++ ++CFNCG+ GH ++ CP
Sbjct: 238 RIAQFKTQQGNNQKPRLTLGPQSMPQGASTQQQPAKREQGSKPVVCFNCGDPGHYADKCP 297
>emb|CAE02516.2| OSJNBb0003A12.3 [Oryza sativa (japonica cultivar-group)]
gi|38347085|emb|CAE05109.2| OSJNBa0001M07.5 [Oryza
sativa (japonica cultivar-group)]
gi|50930335|ref|XP_474695.1| OSJNBa0001M07.5 [Oryza
sativa (japonica cultivar-group)]
Length = 1471
Score = 108 bits (270), Expect = 2e-22
Identities = 80/280 (28%), Positives = 112/280 (39%), Gaps = 25/280 (8%)
Query: 14 QAVAQAVGQWPNANAGVTAEMRMLETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQY 73
Q QA Q N G L F+R PPTF +P A WL IE+ ++Q
Sbjct: 44 QVQQQAQQQQQNLQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQC 103
Query: 74 TEDQKVRFGTHQLAEEGDDWWVSLLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIE 133
E +KV F THQL WW + + T + GA VTW FR F PE + +K+ E
Sbjct: 104 NEQEKVAFATHQLQGPASVWWDNYMVT-RPTGAEVTWTEFRHSFNKAQVPEGIVAQKKRE 162
Query: 134 FLELKQGNMSMTEYAAKFVELAKFYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRV 193
F L+QG ++ EY +F LA++ P E K KF +GL ++ + +
Sbjct: 163 FRSLQQGTRTVIEYLHEFNRLARYAPEDVRTDAE--KQEKFLSGLDDELTNQLISRDYED 220
Query: 194 FSELVNSCR--------------IYEDDTKAHYKIVNERKTKGQQS-------RPKPYSA 232
F +L S + + H N+ G + P P S
Sbjct: 221 FEKLGKSQKPRFTMGHHGGPSTMVIRPHRPYHPGSFNKNHHSGSHNNSEQHSLNPTPSSL 280
Query: 233 PADKGKQRMVEDRRPKKKDALAEIICFNCGEKGHKSNACP 272
R +PK+ E +CFNC + GH CP
Sbjct: 281 KIPAQSVRPALPEQPKRLGEKPE-LCFNCNKPGHTVGKCP 319
>gb|AAT81665.1| putative retrotransposon protein [Oryza sativa (japonica
cultivar-group)]
Length = 2784
Score = 108 bits (269), Expect = 3e-22
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 7/240 (2%)
Query: 37 LETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVS 96
L F+R PPTF +P A WL IE+ ++Q T+ +KV F +HQL +WW
Sbjct: 1078 LAEFLRVRPPTFSSTANPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWW-D 1136
Query: 97 LLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAK 156
+ +TW F F + P V K+ EF L QG+ S+TEY +F LA+
Sbjct: 1137 HFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLAR 1196
Query: 157 FYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDD----TKAHY 212
+ P E + KF GL ++ + F +LV+ ED +
Sbjct: 1197 YAPEDVRNDEE--RQEKFLEGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKR 1254
Query: 213 KIVNERKTKGQQSRPKPYSAPADKGKQRMVEDRRPKKKDALAEIICFNCGEKGHKSNACP 272
+I + +G +P+ P + + + K++ + ++CFN G+ GH ++ CP
Sbjct: 1255 RIAQFKTQQGNNQKPRLTLGPQSMPQGAPAQQQPAKREQSSKPVVCFNYGDPGHYADKCP 1314
>gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532908|ref|NP_920756.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1679
Score = 107 bits (267), Expect = 5e-22
Identities = 66/240 (27%), Positives = 106/240 (43%), Gaps = 7/240 (2%)
Query: 37 LETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVS 96
L F+R PP F +P A WL IE+ ++Q T+ +KV F +HQL +WW
Sbjct: 60 LAEFLRVRPPIFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWW-D 118
Query: 97 LLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAK 156
+ +TW F F + P V K+ EF L QG+ S+TEY +F LA+
Sbjct: 119 HFRLNRITAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLAR 178
Query: 157 FYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDD----TKAHY 212
+ P E + KF GL ++ + F +LV+ ED +
Sbjct: 179 YAPEDVRNDEE--RQEKFLEGLNDELSYPLMTGDYPDFQKLVDKAIRQEDKYNRMEQKKR 236
Query: 213 KIVNERKTKGQQSRPKPYSAPADKGKQRMVEDRRPKKKDALAEIICFNCGEKGHKSNACP 272
+I + + +G +P+ P + + K++ ++CFNCG+ GH ++ CP
Sbjct: 237 RIAHFKAQQGSNQKPRLTLGPQSVPHGAPTQQQPAKREQGSKPVVCFNCGDPGHYADKCP 296
>gb|AAQ56328.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 964
Score = 107 bits (267), Expect = 5e-22
Identities = 66/193 (34%), Positives = 94/193 (48%), Gaps = 9/193 (4%)
Query: 7 AALVAALQAVAQAVGQWPNANAGVTAEMRMLETFMRTHPPTFKGRYDPDGAQTWLKEIER 66
A+ A +AQ G + AG AE F RT PP F DP A WL+ IER
Sbjct: 24 ASAAATATHIAQGAGGGGHHAAGGLAE------FQRTQPPVFTRSDDPLDADDWLRTIER 77
Query: 67 VFRVMQYTEDQKVRFGTHQLAEEGDDWWVSLLPTLKQDGAAVTWAVFRREFLSRYFPEDV 126
+++ + +K QL DWW + L ++ DG VTWA FR F + + P+ +
Sbjct: 78 KLTLIRCPDAEKTNLAAEQLQAAAGDWWENFL-AMQPDGRVVTWAQFRDAFRAAHVPKGI 136
Query: 127 RGKKEIEFLELKQGNMSMTEYAAKFVELAKFYPHYAAETTEFLKCIKFENGLRADIKRAI 186
K+ EFL L QGN S+ EY +F LA++ P T+ K +F NGL A+++ +
Sbjct: 137 MDLKQCEFLSLTQGNKSVMEYLCEFNHLARYAPDDV--KTDTRKQNRFMNGLSAEMQLEL 194
Query: 187 GYQQIRVFSELVN 199
F +LVN
Sbjct: 195 AAHSFLDFQDLVN 207
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.133 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,863,612
Number of Sequences: 2540612
Number of extensions: 22258929
Number of successful extensions: 79291
Number of sequences better than 10.0: 4261
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 3616
Number of HSP's that attempted gapping in prelim test: 65165
Number of HSP's gapped (non-prelim): 11387
length of query: 320
length of database: 863,360,394
effective HSP length: 128
effective length of query: 192
effective length of database: 538,162,058
effective search space: 103327115136
effective search space used: 103327115136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)
Medicago: description of AC130806.3