BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130806.14 - phase: 0
(394 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE05583.1| OSJNBa0032N05.11 [Oryza sativa (japonica cultiva... 211 2e-53
gb|AAT39297.1| putative gag-pol protein [Solanum demissum] 211 2e-53
gb|AAP52480.1| putative polyprotein [Oryza sativa (japonica cult... 211 4e-53
gb|AAP53141.1| putative retroelement [Oryza sativa (japonica cul... 210 5e-53
gb|AAP52558.1| putative polyprotein [Oryza sativa (japonica cult... 210 5e-53
emb|CAD39360.2| OSJNBa0059H15.11 [Oryza sativa (japonica cultiva... 210 5e-53
emb|CAE75877.1| B1234D02.1 [Oryza sativa (japonica cultivar-grou... 210 5e-53
emb|CAE04932.2| OSJNBa0017P10.9 [Oryza sativa (japonica cultivar... 210 5e-53
ref|NP_917371.1| Putative polyprotein [Oryza sativa (japonica cu... 210 5e-53
gb|AAQ56471.1| putative polyprotein [Oryza sativa (japonica cult... 210 5e-53
emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa (japonica cultivar... 210 7e-53
ref|NP_908696.1| OSJNBa0011P19.23 [Oryza sativa (japonica cultiv... 209 9e-53
gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cult... 209 1e-52
gb|AAQ56531.1| putative polyprotein [Oryza sativa (japonica cult... 209 1e-52
gb|AAP52698.1| putative polyprotein [Oryza sativa (japonica cult... 209 2e-52
gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cul... 209 2e-52
gb|AAX96166.1| retrotransposon protein, putative, Ty3-gypsy sub-... 209 2e-52
gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cul... 208 2e-52
gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cul... 208 2e-52
gb|AAP52347.1| putative retroelement [Oryza sativa (japonica cul... 208 2e-52
>emb|CAE05583.1| OSJNBa0032N05.11 [Oryza sativa (japonica cultivar-group)]
Length = 1412
Score = 211 bits (538), Expect = 2e-53
Identities = 111/313 (35%), Positives = 182/313 (57%), Gaps = 30/313 (9%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVR------------TGGKVFALAGMQTTNEDRLIRGTCF 138
+VC+NC GH + +C +P++V+ + +V +A + + +I GT
Sbjct: 310 VVCFNCGDPGHYADKCPKPRRVKVVPVQNNSAVPASKARVNHVAAAEAQDAPDVILGTFL 369
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NS+P + D+GATH F+++ A G+ V D++ ++V TP+ +++ + I
Sbjct: 370 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSV-RIE 428
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEES-GVEILSTKE 257
+ G F +L+ L +DVI GM+WL ++ I+C NK V +S + V LS++
Sbjct: 429 IQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANKKVTLTSYDGRVVTVHALSSES 488
Query: 258 MKQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVP 317
++ S NQ ++++P+V E+P+VF D++P +PP+R++EF IDLVP
Sbjct: 489 LR----------------SRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVP 532
Query: 318 RTKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAY 377
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 533 GTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDY 592
Query: 378 PPLNKVPIKNRYP 390
LN V IKN+YP
Sbjct: 593 RALNDVTIKNKYP 605
>gb|AAT39297.1| putative gag-pol protein [Solanum demissum]
Length = 1438
Score = 211 bits (538), Expect = 2e-53
Identities = 135/406 (33%), Positives = 197/406 (48%), Gaps = 42/406 (10%)
Query: 21 GPKPYSA--PAGKGKQRLNDERRPKGRDTPAEI------------VCFKCGEKGHKSNVC 66
GP P SA PA + + N + + PA+ KCG + +C
Sbjct: 277 GPAPSSARAPAPRYRGEFNGQNSKDFKARPAQSSGSVAQGSSKPPAYAKCGR--NHLGIC 334
Query: 67 TKDEKKCFRCGQKGHVLADCKRGDIVCYNCNGEGHISSQCTQPKKVR--------TGG-- 116
+ CF+CGQ GH + +C + NG S P + TGG
Sbjct: 335 REGSIGCFKCGQNGHFMRECPKNR----QGNGGNRAQSSSVVPLDMTAPRGATSSTGGGA 390
Query: 117 -KVFALAGM-QTTNEDRLIRGTCFFNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKG 174
+++A+ + N ++ + + A++D G + F+ L A K ++ +
Sbjct: 391 NRLYAITSRHEPENSPNVVTRMIKVFAFDVYALLDPGVSLSFVTLYVANKFDVLPERLCE 450
Query: 175 EMVVETPAKGSVTTSLVCLICPISMFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINC 234
V TP S+ V CP S+ + DLV L + DVI GMNWL ++C
Sbjct: 451 PFCVSTPVGESILAERVYRDCPDSINHKSTMADLVELDMVDFDVILGMNWLHACYASLDC 510
Query: 235 FNKTVHF----------SSAEEESGVEILSTKEMKQLERDGILMYSLMACLSLENQAVID 284
+ V F SS+ +S + ++L G + + + S
Sbjct: 511 RTRVVKFQFPNEPVFEWSSSSAVPKGRFISYLKARKLVSKGCIYHLVRVHDSSVEIPHFQ 570
Query: 285 KLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVPRTKPVSMAPYRMSASELAELKNQLEDL 344
+P+V EFP+VF D++P +PPERE++F IDL+P T P+S+ PYRM+ SEL ELK QL+DL
Sbjct: 571 SVPIVREFPKVFPDDLPGIPPEREIDFGIDLIPDTHPISIPPYRMAPSELKELKEQLKDL 630
Query: 345 LDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAYPPLNKVPIKNRYP 390
LDK F+R SV PWGAPVL +KKDGS+R+CI Y LNKV IKN+YP
Sbjct: 631 LDKGFIRPSVSPWGAPVLFVRKKDGSLRMCIDYRQLNKVTIKNKYP 676
>gb|AAP52480.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531782|ref|NP_920193.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18657010|gb|AAL78097.1| Putative polyprotein [Oryza
sativa]
Length = 1473
Score = 211 bits (536), Expect = 4e-53
Identities = 110/313 (35%), Positives = 182/313 (58%), Gaps = 30/313 (9%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVR------------TGGKVFALAGMQTTNEDRLIRGTCF 138
+VC+NC GH + +C +P++V+ + +V +A + + +I GT
Sbjct: 310 VVCFNCGDPGHYADKCPKPRRVKVVPVQNNSAVPASKARVNHVAAAEAQDAPDVILGTFL 369
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NS+P + D+GATH F+++ A G+ V D++ ++V TP+ +++ + I
Sbjct: 370 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSV-RIE 428
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEES-GVEILSTKE 257
+ G F +L+ L +DVI GM+WL ++ I+C N+ V +S + V LS++
Sbjct: 429 IKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSES 488
Query: 258 MKQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVP 317
++ S NQ ++++P+V E+P+VF D++P +PP+R++EF IDLVP
Sbjct: 489 LR----------------SRLNQVTLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVP 532
Query: 318 RTKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAY 377
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 533 GTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDY 592
Query: 378 PPLNKVPIKNRYP 390
LN V IKN+YP
Sbjct: 593 RALNDVTIKNKYP 605
>gb|AAP53141.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533104|ref|NP_920854.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22539088|gb|AAN01260.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1683
Score = 210 bits (535), Expect = 5e-53
Identities = 110/313 (35%), Positives = 182/313 (58%), Gaps = 30/313 (9%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVR------------TGGKVFALAGMQTTNEDRLIRGTCF 138
+VC+NC GH + +C +P++V+ + +V +A + + +I GT
Sbjct: 585 VVCFNCGDPGHYADKCPKPRRVKVVPAQNNSAVSASKARVNHVAAAEAQDAPDVILGTFL 644
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NS+P + D+GATH F+++ A G+ V D++ ++V TP+ +++ + I
Sbjct: 645 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSV-RIE 703
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEES-GVEILSTKE 257
+ G F +L+ L +DVI GM+WL ++ I+C N+ V +S + V LS++
Sbjct: 704 IQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSES 763
Query: 258 MKQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVP 317
++ S NQ ++++P+V E+P+VF D++P +PP+R++EF IDLVP
Sbjct: 764 LR----------------SRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVP 807
Query: 318 RTKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAY 377
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 808 GTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDY 867
Query: 378 PPLNKVPIKNRYP 390
LN V IKN+YP
Sbjct: 868 RALNDVTIKNKYP 880
>gb|AAP52558.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531938|ref|NP_920271.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22138474|gb|AAM93458.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1406
Score = 210 bits (535), Expect = 5e-53
Identities = 110/313 (35%), Positives = 182/313 (58%), Gaps = 30/313 (9%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVR------------TGGKVFALAGMQTTNEDRLIRGTCF 138
+VC+NC GH + +C +P++V+ + +V +A + + +I GT
Sbjct: 243 VVCFNCGDPGHYADKCPKPRRVKVVPAQSNSAVPASKARVNHVAAAEAQDAPDVILGTFL 302
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NS+P + D+GATH F+++ A G+ V D++ ++V TP+ +++ + I
Sbjct: 303 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSV-RIE 361
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEES-GVEILSTKE 257
+ G F +L+ L +DVI GM+WL ++ I+C N+ V +S + V LS++
Sbjct: 362 IQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSES 421
Query: 258 MKQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVP 317
++ S NQ ++++P+V E+P+VF D++P +PP+R++EF IDLVP
Sbjct: 422 LR----------------SRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVP 465
Query: 318 RTKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAY 377
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 466 GTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDY 525
Query: 378 PPLNKVPIKNRYP 390
LN V IKN+YP
Sbjct: 526 RALNDVTIKNKYP 538
>emb|CAD39360.2| OSJNBa0059H15.11 [Oryza sativa (japonica cultivar-group)]
gi|50921669|ref|XP_471195.1| OSJNBa0059H15.11 [Oryza
sativa (japonica cultivar-group)]
Length = 585
Score = 210 bits (535), Expect = 5e-53
Identities = 110/312 (35%), Positives = 182/312 (58%), Gaps = 28/312 (8%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVR------------TGGKVFALAGMQTTNEDRLIRGTCF 138
+VC+NC GH + +C +P++V+ + +V +A + + +I GT
Sbjct: 268 VVCFNCGEPGHYADKCPKPRRVKVVPVQSNSTVPASKARVNHVAAAEAQDAPDVILGTFL 327
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NS+P + D+GATH F+++ A G+ V D++ M+V TP+ +++ + I
Sbjct: 328 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPMMVSTPSNQALSLQRSPSV-RIE 386
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEESGVEILSTKEM 258
+ G F +L+ L +DVI GM+WL ++ I+C N+ V +S +G +++ +
Sbjct: 387 IKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTS----NGGRVVTVHAL 442
Query: 259 KQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVPR 318
S + S NQ ++++P+V E+P+VF D++P +PP+R++EF IDLVP
Sbjct: 443 -----------SSESLRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVPG 491
Query: 319 TKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAYP 378
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 492 TTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDYR 551
Query: 379 PLNKVPIKNRYP 390
LN V IKN+YP
Sbjct: 552 ALNDVTIKNKYP 563
>emb|CAE75877.1| B1234D02.1 [Oryza sativa (japonica cultivar-group)]
gi|38344464|emb|CAE04935.2| OSJNBa0017P10.12 [Oryza
sativa (japonica cultivar-group)]
gi|50921977|ref|XP_471349.1| OSJNBa0017P10.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1742
Score = 210 bits (535), Expect = 5e-53
Identities = 110/313 (35%), Positives = 182/313 (58%), Gaps = 30/313 (9%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVR------------TGGKVFALAGMQTTNEDRLIRGTCF 138
+VC+NC GH + +C +P++V+ + +V +A + + +I GT
Sbjct: 579 VVCFNCGDPGHYADKCPKPRRVKVVPAENNSAVPASKARVNHVAAAEAQDAPDVILGTFL 638
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NS+P I + D+GATH F+++ G+ V D++ ++V TP+ +++ + I
Sbjct: 639 VNSVPAIVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSV-RIE 697
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEES-GVEILSTKE 257
+ G F +L+ L +DVI GM+WL ++ I+C N+ V +S + V LS++
Sbjct: 698 IQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVPALSSES 757
Query: 258 MKQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVP 317
++ S NQ ++++P+V E+P+VF D++P +PP+R++EF IDLVP
Sbjct: 758 LR----------------SRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVP 801
Query: 318 RTKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAY 377
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 802 GTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDY 861
Query: 378 PPLNKVPIKNRYP 390
LN V IKN+YP
Sbjct: 862 RALNDVTIKNKYP 874
>emb|CAE04932.2| OSJNBa0017P10.9 [Oryza sativa (japonica cultivar-group)]
gi|50921971|ref|XP_471346.1| OSJNBa0017P10.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1752
Score = 210 bits (535), Expect = 5e-53
Identities = 111/313 (35%), Positives = 181/313 (57%), Gaps = 30/313 (9%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVRT------------GGKVFALAGMQTTNEDRLIRGTCF 138
+VC+NC GH + +C +P++V+ +V +A + + +I GT
Sbjct: 590 VVCFNCGDPGHYADKCPKPRRVKVVPAQSNSTVPAPKARVNHVAAAEAQDAPDVILGTFL 649
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NS+P + D+GATH F+++ A G+ V D++ ++V TP+ +++ + I
Sbjct: 650 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSV-RIE 708
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEES-GVEILSTKE 257
+ G F +L+ L +DVI GM+WL ++ I+C N+ V +S + V LS++
Sbjct: 709 IQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSES 768
Query: 258 MKQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVP 317
++ S NQ ++++PVV E+P+VF D++P +PP+R++EF IDLVP
Sbjct: 769 LR----------------SRLNQITLEEIPVVREYPDVFPDDLPGMPPKRDIEFRIDLVP 812
Query: 318 RTKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAY 377
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 813 GTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDY 872
Query: 378 PPLNKVPIKNRYP 390
LN V IKN+YP
Sbjct: 873 RTLNDVTIKNKYP 885
>ref|NP_917371.1| Putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 210 bits (535), Expect = 5e-53
Identities = 110/313 (35%), Positives = 182/313 (58%), Gaps = 30/313 (9%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVR------------TGGKVFALAGMQTTNEDRLIRGTCF 138
+VC+NC GH + +C +P++V+ + +V +A + + +I GT
Sbjct: 312 VVCFNCGDPGHYADKCPKPRRVKVVPAQNNSAVPASKARVNHVAAAEAQDAPDVILGTFL 371
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NS+P + D+GATH F+++ A G+ V D++ ++V TP+ +++ + I
Sbjct: 372 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSV-RIE 430
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEES-GVEILSTKE 257
+ G F +L+ L +DVI GM+WL ++ I+C N+ V +S + V LS++
Sbjct: 431 IQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSES 490
Query: 258 MKQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVP 317
++ S NQ ++++P+V E+P+VF D++P +PP+R++EF IDLVP
Sbjct: 491 LR----------------SRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVP 534
Query: 318 RTKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAY 377
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 535 GTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDY 594
Query: 378 PPLNKVPIKNRYP 390
LN V IKN+YP
Sbjct: 595 RALNDVTIKNKYP 607
>gb|AAQ56471.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|34015262|gb|AAQ56454.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1735
Score = 210 bits (535), Expect = 5e-53
Identities = 111/313 (35%), Positives = 182/313 (57%), Gaps = 30/313 (9%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVR------------TGGKVFALAGMQTTNEDRLIRGTCF 138
+VC+NC GH + +C +P++V+ + +V +A + + +I GT
Sbjct: 572 VVCFNCGDPGHYADKCPKPRRVKVVPAQSNSAVPASKARVNHVAAAEAQDAPDVILGTFP 631
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NS+P + D+GATH F+++ A G+ V D++ ++V TP+ +++ + I
Sbjct: 632 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSNQALSLQRSPSV-RIE 690
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEES-GVEILSTKE 257
+ G F +L+ L +DVI GM+WL +R I+C N+ V +S + V LS++
Sbjct: 691 IKGVPFVANLILLESKDLDVILGMDWLARHRGVIDCANRKVTLTSNDGRVVTVHALSSES 750
Query: 258 MKQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVP 317
++ S NQ ++++P+V E+P+VF D++P +PP+R++EF IDLVP
Sbjct: 751 LR----------------SRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVP 794
Query: 318 RTKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAY 377
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 795 GTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDY 854
Query: 378 PPLNKVPIKNRYP 390
LN V IKN+YP
Sbjct: 855 RALNDVTIKNKYP 867
>emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa (japonica cultivar-group)]
gi|50930145|ref|XP_474600.1| OSJNBb0115I21.3 [Oryza
sativa (japonica cultivar-group)]
Length = 1779
Score = 210 bits (534), Expect = 7e-53
Identities = 110/313 (35%), Positives = 181/313 (57%), Gaps = 30/313 (9%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVR------------TGGKVFALAGMQTTNEDRLIRGTCF 138
+VC+NC GH + +C +P++V+ + +V +A + +I GT
Sbjct: 616 VVCFNCGDPGHYADKCPKPRRVKVVPAQNNSAVPASKARVNHVAAAEAQGAPDVILGTFL 675
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NS+P + D+GATH F+++ A G+ V D++ ++V TP+ +++ + I
Sbjct: 676 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSV-RIE 734
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEES-GVEILSTKE 257
+ G F +L+ L +DVI GM+WL ++ I+C N+ V +S + V LS++
Sbjct: 735 IQGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSES 794
Query: 258 MKQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVP 317
++ S NQ ++++P+V E+P+VF D++P +PP+R++EF IDLVP
Sbjct: 795 LR----------------SRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVP 838
Query: 318 RTKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAY 377
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 839 GTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDY 898
Query: 378 PPLNKVPIKNRYP 390
LN V IKN+YP
Sbjct: 899 RALNDVTIKNKYP 911
>ref|NP_908696.1| OSJNBa0011P19.23 [Oryza sativa (japonica cultivar-group)]
Length = 1379
Score = 209 bits (533), Expect = 9e-53
Identities = 110/316 (34%), Positives = 182/316 (56%), Gaps = 30/316 (9%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVR------------TGGKVFALAGMQTTNEDRLIRGTCF 138
+VC+NC GH + +C +P++V+ + +V +A + + +I GT
Sbjct: 221 VVCFNCGDPGHYADKCPKPRRVKVVPTQSNSTVPASKARVNHVAAAEAQDAPDVILGTFL 280
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
N +P + D+GATH F+++ A G+ V D++ ++V TP+ +++ L I
Sbjct: 281 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR-SLSVRIE 339
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEES-GVEILSTKE 257
+ G F +L+ L +DVI GM+WL ++ I+C N+ V +S + V LS++
Sbjct: 340 IQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRRVTLTSNDGRVVTVHALSSES 399
Query: 258 MKQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVP 317
++ S NQ ++++P+V E+P+VF D++P +PP+R++EF IDLVP
Sbjct: 400 LR----------------SRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVP 443
Query: 318 RTKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAY 377
T P+ PYRM+ +ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 444 GTTPIHKRPYRMAVNELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDY 503
Query: 378 PPLNKVPIKNRYPSSK 393
LN V IKN+YP S+
Sbjct: 504 RALNDVTIKNKYPLSR 519
>gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1717
Score = 209 bits (532), Expect = 1e-52
Identities = 108/312 (34%), Positives = 176/312 (55%), Gaps = 28/312 (8%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVRTG------------GKVFALAGMQTTNEDRLIRGTCF 138
++C+NC GH + +C +P++V+ +V +A + N ++ GT
Sbjct: 578 VICFNCGDPGHYADKCPKPRRVKNAPAPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFP 637
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NSIP + D+GATH F++ G+ V ++ ++V TP V ++ C I
Sbjct: 638 VNSIPATVLFDSGATHSFLSKSFTSNHGMEVISLERPLLVNTPGN-QVFSTQYCPSATIE 696
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEESGVEILSTKEM 258
+ F L+ L +DVI GM+WL +R I+C N+ V +S+ E+ +S+ +
Sbjct: 697 IEEVPFPSSLILLESKDLDVILGMDWLSCHRGVIDCANRKVTLTSSNGETVSFFMSSPKS 756
Query: 259 KQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVPR 318
G+++ NQ + ++P+V ++P+VF +++P +PP+RE+EF IDLVP
Sbjct: 757 H-----GVIL----------NQVALQEIPIVQDYPDVFPEDLPGMPPKREIEFRIDLVPG 801
Query: 319 TKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAYP 378
T P+ PYRM+A+EL E+K Q+EDLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 802 TNPIHKRPYRMAANELVEVKRQVEDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYR 861
Query: 379 PLNKVPIKNRYP 390
LN+V IKN+YP
Sbjct: 862 ALNEVTIKNKYP 873
>gb|AAQ56531.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1289
Score = 209 bits (532), Expect = 1e-52
Identities = 111/313 (35%), Positives = 181/313 (57%), Gaps = 30/313 (9%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVR------------TGGKVFALAGMQTTNEDRLIRGTCF 138
+VC+NC GH + +C +P++V+ + +V +A + + +I GT
Sbjct: 310 VVCFNCGDPGHYADKCPKPRRVKVVPAQSNSAVPASKARVNHVAAAEAQDAPDVILGTFP 369
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NS+P + D+GATH F+++ A G+ V D++ ++V TP +++ + I
Sbjct: 370 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPRNQALSLQRSPSV-RIE 428
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEES-GVEILSTKE 257
+ G F +L+ L +DVI GM+WL +R I+C N+ V +S + V LS++
Sbjct: 429 IKGVPFLANLILLESKDLDVILGMDWLARHRGVIDCANRKVTLTSNDGRVVTVHALSSES 488
Query: 258 MKQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVP 317
++ S NQ ++++P+V E+P+VF D++P +PP+R++EF IDLVP
Sbjct: 489 LR----------------SRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVP 532
Query: 318 RTKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAY 377
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 533 GTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDY 592
Query: 378 PPLNKVPIKNRYP 390
LN V IKN+YP
Sbjct: 593 RALNDVTIKNKYP 605
>gb|AAP52698.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532218|ref|NP_920411.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225021|gb|AAL86497.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1722
Score = 209 bits (531), Expect = 2e-52
Identities = 109/313 (34%), Positives = 181/313 (57%), Gaps = 30/313 (9%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVR------------TGGKVFALAGMQTTNEDRLIRGTCF 138
+VC+NC GH + +C +P++V+ + +V +A + + +I GT
Sbjct: 559 VVCFNCGDPGHYADKCPKPRRVKVVPAQSNSAVPASKARVNHVAAAEAQDAPDVILGTFL 618
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NS+P + D+G TH F+++ A G+ V D++ ++V TP+ +++ + I
Sbjct: 619 VNSVPTTVLFDSGVTHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSV-RIE 677
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEES-GVEILSTKE 257
+ G F +L+ L +DVI GM+WL ++ I+C N+ V +S + V LS++
Sbjct: 678 IKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSES 737
Query: 258 MKQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVP 317
++ S NQ ++++P+V E+P+VF D++P +PP+R++EF IDLVP
Sbjct: 738 LR----------------SRLNQITLEEIPIVQEYPDVFPDDLPGMPPKRDIEFRIDLVP 781
Query: 318 RTKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAY 377
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 782 GTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDY 841
Query: 378 PPLNKVPIKNRYP 390
LN V IKN+YP
Sbjct: 842 RALNDVTIKNKYP 854
>gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531590|ref|NP_920097.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881768|gb|AAM01169.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1449
Score = 209 bits (531), Expect = 2e-52
Identities = 109/312 (34%), Positives = 177/312 (55%), Gaps = 28/312 (8%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVRT------------GGKVFALAGMQTTNEDRLIRGTCF 138
++C+NC GH + +C +P+ V+ +V +A + N ++ GT
Sbjct: 286 VICFNCGDPGHYADKCPKPRHVKNVPVPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFP 345
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NSIP + D+GATH F++ A K G+ V + ++V TP V ++ C I
Sbjct: 346 VNSIPATVLFDSGATHSFLSKSFATKHGMEVVSLGRPLLVNTPGN-QVFSTRYCPSVTIE 404
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEESGVEILSTKEM 258
+ G F L+ L +DVI GM+WL +R I+C N+ V +++ E+ S+ +
Sbjct: 405 IEGVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNSNGETVSFFASSPKS 464
Query: 259 KQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVPR 318
G+++ NQ + ++P+V ++P+VF +++P +PP+R++EF IDLVP
Sbjct: 465 H-----GVVL----------NQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPG 509
Query: 319 TKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAYP 378
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 510 TNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYR 569
Query: 379 PLNKVPIKNRYP 390
LN+V IKN+YP
Sbjct: 570 ALNEVTIKNKYP 581
>gb|AAX96166.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
gi|62733811|gb|AAX95920.1| retrotransposon protein,
putative, Ty3-gypsy sub-class [Oryza sativa (japonica
cultivar-group)]
Length = 919
Score = 209 bits (531), Expect = 2e-52
Identities = 111/316 (35%), Positives = 180/316 (56%), Gaps = 30/316 (9%)
Query: 88 RGDIVCYNCNGEGHISSQCTQPKKVRT------------GGKVFALAGMQTTNEDRLIRG 135
R +VC+NC GH + +C +P++V+ +V +A + + +I G
Sbjct: 275 RKPVVCFNCGDPGHYADKCPKPRRVKVVPAQSNSTAPAPKARVNHVAAAEAQDAPDVILG 334
Query: 136 TCFFNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLIC 195
T N +P + D+GATH F+++ A G+ V D++ ++V TP+ +++ L
Sbjct: 335 TFLVNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR-SLSV 393
Query: 196 PISMFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEES-GVEILS 254
I + G F +L+ L +DVI GM+WL + I+C N+ V +S + V LS
Sbjct: 394 RIEIQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTVHALS 453
Query: 255 TKEMKQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSID 314
++ ++ S NQ ++++P+V E+P+VF D++P +PP+R++EF ID
Sbjct: 454 SESLR----------------SRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRID 497
Query: 315 LVPRTKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLC 374
LVP T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C
Sbjct: 498 LVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 557
Query: 375 IAYPPLNKVPIKNRYP 390
+ Y LN V IKN+YP
Sbjct: 558 VDYRALNDVTIKNKYP 573
>gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532908|ref|NP_920756.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1679
Score = 208 bits (530), Expect = 2e-52
Identities = 110/313 (35%), Positives = 182/313 (58%), Gaps = 30/313 (9%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVR------------TGGKVFALAGMQTTNEDRLIRGTCF 138
+VC+NC GH + +C +P++V+ + +V +A + + +I GT
Sbjct: 280 VVCFNCGDPGHYADKCPKPRRVKVVPAQNNSTVPASKARVNHVAAAEAQDAPDVILGTFP 339
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NS+P + D+GATH F+++ A G+ V D++ ++V TP+ +++ + I
Sbjct: 340 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQALSLQRSPSV-RIE 398
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEES-GVEILSTKE 257
+ G F +L+ L +DVI GM+WL ++ I+C N+ V +S + V LS++
Sbjct: 399 IKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSES 458
Query: 258 MKQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVP 317
++ S NQ ++++P+V E+P+VF D++P +PP+R++EF IDLVP
Sbjct: 459 LR----------------SKLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVP 502
Query: 318 RTKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAY 377
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 503 GTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDY 562
Query: 378 PPLNKVPIKNRYP 390
LN V IKN+YP
Sbjct: 563 RALNDVTIKNKYP 575
>gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531578|ref|NP_920091.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1461
Score = 208 bits (530), Expect = 2e-52
Identities = 109/312 (34%), Positives = 175/312 (55%), Gaps = 28/312 (8%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVRTG------------GKVFALAGMQTTNEDRLIRGTCF 138
++C+NC GH + +C +P++V+ +V +A + N ++ GT
Sbjct: 298 VICFNCGDPGHYADKCPKPRRVKNAPAPNNFNVPAPKARVNHVAAAEAQNAPDVVLGTFP 357
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NSIP + D+GATH F++ A K G+ V + ++V TP + +T C I
Sbjct: 358 VNSIPATVLFDSGATHSFLSKSFAIKHGMEVVSLGRPLLVNTPGNQAFSTRY-CPSVTIE 416
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEESGVEILSTKEM 258
+ F L+ L +DVI GM+WL +R I+C N+ V +S+ E+ V ++
Sbjct: 417 IEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSSNGET-VSFFASSPK 475
Query: 259 KQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVPR 318
E + NQ + ++P+V ++P+VF +++P +PP+R++EF IDLVP
Sbjct: 476 SHGE--------------VLNQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPG 521
Query: 319 TKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAYP 378
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 522 TNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYR 581
Query: 379 PLNKVPIKNRYP 390
LN+V IKN+YP
Sbjct: 582 ALNEVTIKNKYP 593
>gb|AAP52347.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531516|ref|NP_920060.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21671891|gb|AAM74253.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1140
Score = 208 bits (530), Expect = 2e-52
Identities = 108/312 (34%), Positives = 177/312 (56%), Gaps = 28/312 (8%)
Query: 91 IVCYNCNGEGHISSQCTQPKKVRTG------------GKVFALAGMQTTNEDRLIRGTCF 138
++C+NC GH + +C +P++V+ +V +A + N ++ GT
Sbjct: 180 VICFNCGDPGHYADKCPKPRRVKNAPTPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFP 239
Query: 139 FNSIPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLICPIS 198
NSIP + D+GATH F++ A G+ V + ++V TP V ++ C I
Sbjct: 240 VNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGN-QVFSTQYCPSATIE 298
Query: 199 MFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFNKTVHFSSAEEESGVEILSTKEM 258
+ F L+ L +DVI GM+WL +R I+C N+ V +S+ E+ +S+ +
Sbjct: 299 IEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSSNGETVSFFVSSPKY 358
Query: 259 KQLERDGILMYSLMACLSLENQAVIDKLPVVNEFPEVFSDEIPDVPPEREVEFSIDLVPR 318
G+++ NQ + ++P+V ++P+VF +++P +PP+R++EF IDLVP
Sbjct: 359 H-----GVIL----------NQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPG 403
Query: 319 TKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAYP 378
T P+ PYRM+A+ELAE+K Q++DLL K ++R S PWGAPV+ +KKD + R+C+ Y
Sbjct: 404 TNPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYR 463
Query: 379 PLNKVPIKNRYP 390
LN+V IKN+YP
Sbjct: 464 ALNEVTIKNKYP 475
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 691,116,305
Number of Sequences: 2540612
Number of extensions: 30418963
Number of successful extensions: 109445
Number of sequences better than 10.0: 5284
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 4156
Number of HSP's that attempted gapping in prelim test: 88479
Number of HSP's gapped (non-prelim): 17056
length of query: 394
length of database: 863,360,394
effective HSP length: 130
effective length of query: 264
effective length of database: 533,080,834
effective search space: 140733340176
effective search space used: 140733340176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)
Medicago: description of AC130806.14