BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130804.6 + phase: 0 /pseudo
(99 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD25627.1| very similar to mouse Dhm1 and Dhm2 [Arabidopsis ... 66 2e-10
gb|AAM14350.1| putative exonuclease [Arabidopsis thaliana] gi|17... 66 2e-10
ref|XP_463495.1| putative 5-3 exoribonuclease [Oryza sativa (jap... 63 2e-09
dbj|BAD82721.1| putative 5'-3' exoribonuclease (XRN3) [Oryza sat... 63 2e-09
gb|AAN15494.1| unknown protein [Arabidopsis thaliana] gi|2253109... 62 3e-09
gb|AAT76426.1| putative 5'-3' exonuclease [Oryza sativa (japonic... 62 3e-09
ref|NP_565114.1| 5'-3' exoribonuclease (XRN3) [Arabidopsis thali... 62 3e-09
pir||D96786 protein F10A5.15 [imported] - Arabidopsis thaliana g... 62 3e-09
dbj|BAD94308.1| 5'-3' exoribonuclease 2 [Arabidopsis thaliana] g... 61 6e-09
dbj|BAD93823.1| 5'-3' exoribonuclease 2 [Arabidopsis thaliana] 61 6e-09
dbj|BAB09325.1| 5'-3' exoribonuclease 2 [Arabidopsis thaliana] 61 6e-09
gb|AAM10286.1| AT5g42540/K16E1_1 [Arabidopsis thaliana] gi|13605... 61 6e-09
gb|AAK39852.1| very similar to mouse Dhm1 and Dhm2 [Guillardia t... 50 1e-05
ref|XP_613896.1| PREDICTED: similar to 5-3 exoribonuclease 2, pa... 50 2e-05
ref|XP_595586.1| PREDICTED: similar to 5-3 exoribonuclease 2, pa... 50 2e-05
ref|XP_309641.2| ENSANGP00000004085 [Anopheles gambiae str. PEST... 49 3e-05
emb|CAG82487.1| unnamed protein product [Yarrowia lipolytica CLI... 49 3e-05
emb|CAG62182.1| unnamed protein product [Candida glabrata CBS138... 49 3e-05
gb|EAL04170.1| hypothetical protein CaO19.12150 [Candida albican... 49 3e-05
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 49 3e-05
>gb|AAD25627.1| very similar to mouse Dhm1 and Dhm2 [Arabidopsis thaliana]
gi|25405738|pir||G96586 hypothetical protein F20D21.30
[imported] - Arabidopsis thaliana
Length = 965
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/41 (78%), Positives = 35/41 (85%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKEFEME 84
IDGV PRAKMN+QR+RRFR AKD EAEEERLRK+FEME
Sbjct: 103 IDGVAPRAKMNQQRSRRFRAAKDAAEAEAEEERLRKDFEME 143
>gb|AAM14350.1| putative exonuclease [Arabidopsis thaliana]
gi|17381112|gb|AAL36368.1| putative exonuclease
[Arabidopsis thaliana] gi|15221841|ref|NP_175851.1|
5'-3' exoribonuclease (XRN4) [Arabidopsis thaliana]
gi|11875626|gb|AAG40731.1| XRN4 [Arabidopsis thaliana]
Length = 947
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/41 (78%), Positives = 35/41 (85%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKEFEME 84
IDGV PRAKMN+QR+RRFR AKD EAEEERLRK+FEME
Sbjct: 103 IDGVAPRAKMNQQRSRRFRAAKDAAEAEAEEERLRKDFEME 143
>ref|XP_463495.1| putative 5-3 exoribonuclease [Oryza sativa (japonica
cultivar-group)] gi|19571126|dbj|BAB86550.1| putative
5-3 exoribonuclease [Oryza sativa (japonica
cultivar-group)]
Length = 1064
Score = 62.8 bits (151), Expect = 2e-09
Identities = 31/44 (70%), Positives = 34/44 (76%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKEFEMEANK 87
IDGV PRAKMN+QR+RRFR AKD AEEERLR+EFE E K
Sbjct: 102 IDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEREGRK 145
>dbj|BAD82721.1| putative 5'-3' exoribonuclease (XRN3) [Oryza sativa (japonica
cultivar-group)]
Length = 1068
Score = 62.8 bits (151), Expect = 2e-09
Identities = 31/44 (70%), Positives = 34/44 (76%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKEFEMEANK 87
IDGV PRAKMN+QR+RRFR AKD AEEERLR+EFE E K
Sbjct: 102 IDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEREGRK 145
>gb|AAN15494.1| unknown protein [Arabidopsis thaliana] gi|22531090|gb|AAM97049.1|
unknown protein [Arabidopsis thaliana]
Length = 763
Score = 62.4 bits (150), Expect = 3e-09
Identities = 30/44 (68%), Positives = 35/44 (79%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKEFEMEANK 87
IDGV PRAKMN+QR+RRFR+AKD AEEERLR+EFE E +
Sbjct: 102 IDGVAPRAKMNQQRSRRFRSAKDASDAAAEEERLREEFEREGRR 145
>gb|AAT76426.1| putative 5'-3' exonuclease [Oryza sativa (japonica cultivar-group)]
Length = 988
Score = 62.4 bits (150), Expect = 3e-09
Identities = 31/41 (75%), Positives = 33/41 (79%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKEFEME 84
IDGV PRAKMN+QR+RRFR AKD AEEERLRKEFE E
Sbjct: 103 IDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLRKEFEAE 143
>ref|NP_565114.1| 5'-3' exoribonuclease (XRN3) [Arabidopsis thaliana]
gi|11875628|gb|AAG40732.1| XRN3 [Arabidopsis thaliana]
Length = 1020
Score = 62.4 bits (150), Expect = 3e-09
Identities = 30/44 (68%), Positives = 35/44 (79%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKEFEMEANK 87
IDGV PRAKMN+QR+RRFR+AKD AEEERLR+EFE E +
Sbjct: 102 IDGVAPRAKMNQQRSRRFRSAKDASDAAAEEERLREEFEREGRR 145
>pir||D96786 protein F10A5.15 [imported] - Arabidopsis thaliana
gi|9369381|gb|AAF87130.1| F10A5.15 [Arabidopsis
thaliana]
Length = 1037
Score = 62.4 bits (150), Expect = 3e-09
Identities = 30/44 (68%), Positives = 35/44 (79%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKEFEMEANK 87
IDGV PRAKMN+QR+RRFR+AKD AEEERLR+EFE E +
Sbjct: 102 IDGVAPRAKMNQQRSRRFRSAKDASDAAAEEERLREEFEREGRR 145
>dbj|BAD94308.1| 5'-3' exoribonuclease 2 [Arabidopsis thaliana]
gi|15238990|ref|NP_199069.1| 5'-3' exoribonuclease
(XRN2) [Arabidopsis thaliana] gi|11875630|gb|AAG40733.1|
XRN2 [Arabidopsis thaliana] gi|51970342|dbj|BAD43863.1|
unnamed protein product [Arabidopsis thaliana]
Length = 1012
Score = 61.2 bits (147), Expect = 6e-09
Identities = 30/44 (68%), Positives = 33/44 (74%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKEFEMEANK 87
IDGV PRAKMN+QR RRFR AKD AEEE+LR+EFE E K
Sbjct: 104 IDGVAPRAKMNQQRARRFRAAKDAAEAAAEEEQLREEFEREGKK 147
>dbj|BAD93823.1| 5'-3' exoribonuclease 2 [Arabidopsis thaliana]
Length = 1012
Score = 61.2 bits (147), Expect = 6e-09
Identities = 30/44 (68%), Positives = 33/44 (74%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKEFEMEANK 87
IDGV PRAKMN+QR RRFR AKD AEEE+LR+EFE E K
Sbjct: 104 IDGVAPRAKMNQQRARRFRAAKDAAEAAAEEEQLREEFEREGKK 147
>dbj|BAB09325.1| 5'-3' exoribonuclease 2 [Arabidopsis thaliana]
Length = 746
Score = 61.2 bits (147), Expect = 6e-09
Identities = 30/44 (68%), Positives = 33/44 (74%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKEFEMEANK 87
IDGV PRAKMN+QR RRFR AKD AEEE+LR+EFE E K
Sbjct: 104 IDGVAPRAKMNQQRARRFRAAKDAAEAAAEEEQLREEFEREGKK 147
>gb|AAM10286.1| AT5g42540/K16E1_1 [Arabidopsis thaliana] gi|13605795|gb|AAK32883.1|
AT5g42540/K16E1_1 [Arabidopsis thaliana]
Length = 813
Score = 61.2 bits (147), Expect = 6e-09
Identities = 30/44 (68%), Positives = 33/44 (74%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKEFEMEANK 87
IDGV PRAKMN+QR RRFR AKD AEEE+LR+EFE E K
Sbjct: 104 IDGVAPRAKMNQQRARRFRAAKDAAEAAAEEEQLREEFEREGKK 147
>gb|AAK39852.1| very similar to mouse Dhm1 and Dhm2 [Guillardia theta]
gi|25396735|pir||B90090 very similar to mouse Dhm1 and
Dhm2 [imported] - Guillardia theta nucleomorph
gi|13812165|ref|NP_113293.1| very similar to mouse Dhm1
and Dhm2 [Guillardia theta]
Length = 542
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKEFEMEAN 86
IDGV PRAKMN+QR+RRFR KDNE + + R R +++N
Sbjct: 81 IDGVAPRAKMNQQRSRRFRAIKDNEKKSDFDHRNRLNLTLDSN 123
>ref|XP_613896.1| PREDICTED: similar to 5-3 exoribonuclease 2, partial [Bos taurus]
Length = 441
Score = 49.7 bits (117), Expect = 2e-05
Identities = 22/37 (59%), Positives = 30/37 (80%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKE 80
IDGV PRAKMN+QR+RRFR +K+ E E++R+R+E
Sbjct: 88 IDGVAPRAKMNQQRSRRFRASKEGMEAEIEKQRVREE 124
>ref|XP_595586.1| PREDICTED: similar to 5-3 exoribonuclease 2, partial [Bos taurus]
Length = 430
Score = 49.7 bits (117), Expect = 2e-05
Identities = 22/37 (59%), Positives = 30/37 (80%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKE 80
IDGV PRAKMN+QR+RRFR +K+ E E++R+R+E
Sbjct: 77 IDGVAPRAKMNQQRSRRFRASKEGMEAEIEKQRVREE 113
>ref|XP_309641.2| ENSANGP00000004085 [Anopheles gambiae str. PEST]
gi|55244601|gb|EAA05380.2| ENSANGP00000004085 [Anopheles
gambiae str. PEST]
Length = 902
Score = 48.9 bits (115), Expect = 3e-05
Identities = 22/37 (59%), Positives = 29/37 (77%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKE 80
IDGV PRAKMN+QR+RRFR +K+ + AE R+R+E
Sbjct: 102 IDGVAPRAKMNQQRSRRFRASKETAEKAAEMARIREE 138
>emb|CAG82487.1| unnamed protein product [Yarrowia lipolytica CLIB99]
gi|50549393|ref|XP_502167.1| hypothetical protein
[Yarrowia lipolytica]
Length = 1526
Score = 48.9 bits (115), Expect = 3e-05
Identities = 26/46 (56%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREA---EEERLRKEFEMEAN 86
IDGV PRAKMN+QR+RRFRTA D E +A EE + KE + ++N
Sbjct: 84 IDGVAPRAKMNQQRSRRFRTALDAEKAKAKALEEGTILKEDQFDSN 129
>emb|CAG62182.1| unnamed protein product [Candida glabrata CBS138]
gi|50293593|ref|XP_449208.1| unnamed protein product
[Candida glabrata]
Length = 1018
Score = 48.9 bits (115), Expect = 3e-05
Identities = 23/41 (56%), Positives = 34/41 (82%), Gaps = 1/41 (2%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEM-REAEEERLRKEFEM 83
+DGV PRAKMN+QR+RRFR+A+D E+ EA EE +R++ ++
Sbjct: 101 VDGVAPRAKMNQQRSRRFRSARDAEIENEAREEIMRQKEQL 141
>gb|EAL04170.1| hypothetical protein CaO19.12150 [Candida albicans SC5314]
gi|46444743|gb|EAL04016.1| hypothetical protein
CaO19.4681 [Candida albicans SC5314]
Length = 968
Score = 48.9 bits (115), Expect = 3e-05
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 6/50 (12%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMR------EAEEERLRKEFEMEANK 87
+DGV PRAKMN+QR RRFR AKD E++ E +E LR E +A K
Sbjct: 97 VDGVAPRAKMNQQRARRFRAAKDAELKAKQLEIEVQERELRGEIINDAIK 146
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 2340
Score = 48.9 bits (115), Expect = 3e-05
Identities = 23/44 (52%), Positives = 28/44 (63%)
Query: 44 IDGVTPRAKMNKQRTRRFRTAKDNEMREAEEERLRKEFEMEANK 87
+DGV PRAKMN+QR RRF++A + E EE LR F E K
Sbjct: 100 VDGVAPRAKMNQQRARRFKSAMAAKQAEVEENILRDRFRAEGKK 143
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,647,050
Number of Sequences: 2540612
Number of extensions: 6104155
Number of successful extensions: 27413
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 27176
Number of HSP's gapped (non-prelim): 236
length of query: 99
length of database: 863,360,394
effective HSP length: 75
effective length of query: 24
effective length of database: 672,814,494
effective search space: 16147547856
effective search space used: 16147547856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC130804.6