BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC128660.9 + phase: 0 /pseudo
(58 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB96842.1| chorismate mutase CM2 [Arabidopsis thaliana] gi|... 66 2e-10
dbj|BAD26595.1| chorismate mutase [Nicotiana tabacum] 63 2e-09
gb|AAD48923.1| chorimate mutase [Lycopersicon esculentum] 62 4e-09
ref|XP_464326.1| putative chorismate mutase, cytosolic [Oryza sa... 54 8e-07
ref|XP_482629.1| putative chorimate mutase [Oryza sativa (japoni... 54 1e-06
dbj|BAC42501.1| putative chorismate mutase [Arabidopsis thaliana... 45 5e-04
gb|AAD21624.1| chorismate mutase 3 [Arabidopsis thaliana] 45 5e-04
emb|CAA81286.1| chorismate mutase precursor [Arabidopsis thalian... 40 0.021
emb|CAB54518.1| chorismate mutase [Arabidopsis thaliana] 40 0.021
dbj|BAB01816.1| chorismate mutase precursor [Arabidopsis thalian... 40 0.021
ref|NP_566846.1| chorismate mutase, chloroplast (CM1) [Arabidops... 40 0.021
emb|CAG98681.1| unnamed protein product [Kluyveromyces lactis NR... 35 0.40
gb|EAA17354.1| CTP synthase [Plasmodium yoelii yoelii] 33 2.6
ref|YP_206985.1| glycosyltransferase [Vibrio fischeri ES114] gi|... 32 5.8
ref|NP_704081.1| transcription elongation factor s-ii, putative ... 31 10.0
ref|NP_703423.1| hypothetical protein [Plasmodium falciparum 3D7... 31 10.0
>emb|CAB96842.1| chorismate mutase CM2 [Arabidopsis thaliana]
gi|5824345|emb|CAB54519.1| chorismate mutase
[Arabidopsis thaliana] gi|22136860|gb|AAM91774.1|
putative chorismate mutase CM2 [Arabidopsis thaliana]
gi|17529008|gb|AAL38714.1| putative chorismate mutase
CM2 [Arabidopsis thaliana] gi|15238285|ref|NP_196648.1|
chorismate mutase, cytosolic (CM2) [Arabidopsis
thaliana] gi|5732016|gb|AAD48922.1| chorimate mutase
[Arabidopsis thaliana] gi|11282559|pir||T50796
chorismate mutase CM2 - Arabidopsis thaliana
Length = 265
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/60 (53%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDN--NDDNKGKQKFDPSMASTFYEKWVIPL 58
MKLLTF+ VEEMVKKR++KK F Q++ F++ D++K K K DP +AS Y +W+IPL
Sbjct: 192 MKLLTFEKVEEMVKKRVQKKAETFGQEVKFNSGYGDESKKKYKVDPLLASRIYGEWLIPL 251
>dbj|BAD26595.1| chorismate mutase [Nicotiana tabacum]
Length = 179
Score = 63.2 bits (152), Expect = 2e-09
Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNK-GKQKFDPSMASTFYEKWVIPL 58
MKLLTF++VEE+VKKR+ KK +F Q + + +D+ K K K DPS+ S Y++WV+PL
Sbjct: 120 MKLLTFEAVEEVVKKRVAKKAFVFGQQVTLNIDDNTKEAKYKVDPSLVSRLYDEWVMPL 178
>gb|AAD48923.1| chorimate mutase [Lycopersicon esculentum]
Length = 255
Score = 62.0 bits (149), Expect = 4e-09
Identities = 29/58 (50%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFDPSMASTFYEKWVIPL 58
MKLLTF++VEEMVKKR+ KK +F Q+++ ++N + + K K DP + S Y++WV+PL
Sbjct: 185 MKLLTFEAVEEMVKKRVAKKAKVFGQEVSLNDNAE-EVKGKIDPLLVSRLYDEWVMPL 241
>ref|XP_464326.1| putative chorismate mutase, cytosolic [Oryza sativa (japonica
cultivar-group)] gi|49388014|dbj|BAD25130.1| putative
chorismate mutase, cytosolic [Oryza sativa (japonica
cultivar-group)]
Length = 255
Score = 54.3 bits (129), Expect = 8e-07
Identities = 26/64 (40%), Positives = 41/64 (63%), Gaps = 6/64 (9%)
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNK------GKQKFDPSMASTFYEKW 54
M LLTFK+VEE VK+R++KK +F Q++ ++N D + + K +P + S Y+ W
Sbjct: 178 MNLLTFKAVEEKVKRRVEKKARIFGQNVTLEDNADKQEGNAGDSECKVNPEVLSKLYDLW 237
Query: 55 VIPL 58
V+PL
Sbjct: 238 VMPL 241
>ref|XP_482629.1| putative chorimate mutase [Oryza sativa (japonica cultivar-group)]
gi|42408702|dbj|BAD09921.1| putative chorimate mutase
[Oryza sativa (japonica cultivar-group)]
Length = 284
Score = 53.9 bits (128), Expect = 1e-06
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 6/64 (9%)
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINFD------NNDDNKGKQKFDPSMASTFYEKW 54
MKLLT ++ E++VK+R++KK +F Q++ D N++ ++ K DPS+ Y+KW
Sbjct: 207 MKLLTSEAQEDVVKRRVQKKAMVFGQNVTLDGPVETGNSNSSQTSFKVDPSLVYKLYDKW 266
Query: 55 VIPL 58
VIPL
Sbjct: 267 VIPL 270
>dbj|BAC42501.1| putative chorismate mutase [Arabidopsis thaliana]
gi|28950893|gb|AAO63370.1| At1g69370 [Arabidopsis
thaliana] gi|15222292|ref|NP_177096.1| chorismate
mutase, putative [Arabidopsis thaliana]
gi|12597791|gb|AAG60103.1| chorismate mutase, putative
[Arabidopsis thaliana] gi|12325088|gb|AAG52497.1|
putative chorismate mutase; 16810-15349 [Arabidopsis
thaliana]
Length = 316
Score = 45.1 bits (105), Expect = 5e-04
Identities = 23/59 (38%), Positives = 37/59 (61%), Gaps = 1/59 (1%)
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINF-DNNDDNKGKQKFDPSMASTFYEKWVIPL 58
M+LLT+++VEE+VKKR++ K +F QDI D + K PS+ + Y + ++PL
Sbjct: 244 MQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSLVAKLYGERIMPL 302
>gb|AAD21624.1| chorismate mutase 3 [Arabidopsis thaliana]
Length = 316
Score = 45.1 bits (105), Expect = 5e-04
Identities = 23/59 (38%), Positives = 37/59 (61%), Gaps = 1/59 (1%)
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINF-DNNDDNKGKQKFDPSMASTFYEKWVIPL 58
M+LLT+++VEE+VKKR++ K +F QDI D + K PS+ + Y + ++PL
Sbjct: 244 MQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSLVAKLYGERIMPL 302
>emb|CAA81286.1| chorismate mutase precursor [Arabidopsis thaliana]
gi|629509|pir||S38958 chorismate mutase (EC 5.4.99.5)
precursor - Arabidopsis thaliana
Length = 334
Score = 39.7 bits (91), Expect = 0.021
Identities = 19/66 (28%), Positives = 35/66 (52%), Gaps = 8/66 (12%)
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINF----DNNDDNKGKQ----KFDPSMASTFYE 52
M +LTF +VE+ +KKR++ KT + Q++ ++ +G + K P + Y
Sbjct: 255 MDMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYG 314
Query: 53 KWVIPL 58
W++PL
Sbjct: 315 DWIMPL 320
>emb|CAB54518.1| chorismate mutase [Arabidopsis thaliana]
Length = 334
Score = 39.7 bits (91), Expect = 0.021
Identities = 19/66 (28%), Positives = 35/66 (52%), Gaps = 8/66 (12%)
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINF----DNNDDNKGKQ----KFDPSMASTFYE 52
M +LTF +VE+ +KKR++ KT + Q++ ++ +G + K P + Y
Sbjct: 255 MDMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYG 314
Query: 53 KWVIPL 58
W++PL
Sbjct: 315 DWIMPL 320
>dbj|BAB01816.1| chorismate mutase precursor [Arabidopsis thaliana]
gi|17380436|sp|P42738|CHMU_ARATH Chorismate mutase,
chloroplast precursor (CM-1)
Length = 334
Score = 39.7 bits (91), Expect = 0.021
Identities = 19/66 (28%), Positives = 35/66 (52%), Gaps = 8/66 (12%)
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINF----DNNDDNKGKQ----KFDPSMASTFYE 52
M +LTF +VE+ +KKR++ KT + Q++ ++ +G + K P + Y
Sbjct: 255 MDMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYG 314
Query: 53 KWVIPL 58
W++PL
Sbjct: 315 DWIMPL 320
>ref|NP_566846.1| chorismate mutase, chloroplast (CM1) [Arabidopsis thaliana]
Length = 340
Score = 39.7 bits (91), Expect = 0.021
Identities = 19/66 (28%), Positives = 35/66 (52%), Gaps = 8/66 (12%)
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINF----DNNDDNKGKQ----KFDPSMASTFYE 52
M +LTF +VE+ +KKR++ KT + Q++ ++ +G + K P + Y
Sbjct: 261 MDMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYG 320
Query: 53 KWVIPL 58
W++PL
Sbjct: 321 DWIMPL 326
>emb|CAG98681.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
gi|50311883|ref|XP_455973.1| unnamed protein product
[Kluyveromyces lactis]
Length = 4915
Score = 35.4 bits (80), Expect = 0.40
Identities = 15/49 (30%), Positives = 26/49 (52%)
Query: 6 FKSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFDPSMASTFYEKW 54
+K+V ++ K+ +K ++ ++D N D K K+K DP EKW
Sbjct: 737 WKNVAKLWKEAIKMADSILKKDSNEKEEADKKKKRKLDPESKQALLEKW 785
>gb|EAA17354.1| CTP synthase [Plasmodium yoelii yoelii]
Length = 756
Score = 32.7 bits (73), Expect = 2.6
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 4 LTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKF-DPSMASTFYE-KWVI 56
L+ K+ ++ LKKK ++ D+ DNN+D KQ F D + + Y+ KW I
Sbjct: 364 LSLKNKKKKKSPELKKKMNKYQYDMCLDNNNDANSKQTFIDETTSDEDYDKKWKI 418
>ref|YP_206985.1| glycosyltransferase [Vibrio fischeri ES114]
gi|59482458|gb|AAW88097.1| glycosyltransferase [Vibrio
fischeri ES114]
Length = 338
Score = 31.6 bits (70), Expect = 5.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 8 SVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQ 40
+V E++KKR+ KTT+ IN +N +KG Q
Sbjct: 145 AVSELIKKRIPSKTTVLNNFINTENLIQSKGTQ 177
>ref|NP_704081.1| transcription elongation factor s-ii, putative [Plasmodium
falciparum 3D7] gi|23498819|emb|CAD50896.1|
transcription elongation factor s-ii, putative
[Plasmodium falciparum 3D7]
Length = 403
Score = 30.8 bits (68), Expect = 10.0
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 2 KLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFD 43
KL + K+ E M+KKR +K + IN DNN+DN D
Sbjct: 99 KLSSLKNYE-MMKKRKSEKIEMANDKINNDNNNDNNNDNNND 139
>ref|NP_703423.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504563|emb|CAD51443.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1527
Score = 30.8 bits (68), Expect = 10.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 9 VEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFDPSMASTF 50
+EE V+K+ KKK T + N +N+DDN + +S F
Sbjct: 531 IEESVQKKKKKKKTNNNNNNNNNNDDDNNENNSSEDQYSSEF 572
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,589,678
Number of Sequences: 2540612
Number of extensions: 2907970
Number of successful extensions: 11367
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11340
Number of HSP's gapped (non-prelim): 18
length of query: 58
length of database: 863,360,394
effective HSP length: 34
effective length of query: 24
effective length of database: 776,979,586
effective search space: 18647510064
effective search space used: 18647510064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC128660.9