BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127021.6 + phase: 0 /pseudo
(408 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM09536.1| reverse transcriptase [Medicago sativa] 135 2e-30
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 123 9e-27
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 122 2e-26
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 119 1e-25
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 119 1e-25
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 116 1e-24
ref|NP_189068.1| expressed protein [Arabidopsis thaliana] 116 1e-24
emb|CAB72467.1| putative protein [Arabidopsis thaliana] gi|11358... 106 1e-21
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 104 6e-21
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 100 1e-19
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 91 5e-17
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 90 1e-16
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 82 4e-14
gb|AAG51754.1| reverse transcriptase, putative; 100033-105622 [A... 79 2e-13
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ... 77 7e-13
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 77 1e-12
gb|AAD32866.1| F14N23.4 [Arabidopsis thaliana] 77 1e-12
gb|AAP53939.1| putative non-LTR retroelement reverse transcripta... 76 2e-12
ref|NP_680602.1| hypothetical protein [Arabidopsis thaliana] 75 3e-12
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 75 4e-12
>gb|AAM09536.1| reverse transcriptase [Medicago sativa]
Length = 168
Score = 135 bits (341), Expect = 2e-30
Identities = 71/164 (43%), Positives = 92/164 (55%), Gaps = 19/164 (11%)
Query: 68 CTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTSQDQWAQLCRHILLSNAKPKN 127
C V+W+ +C+ KD G LA+RDP VN ASLL LT K +TS +QWA +CR L+N PK+
Sbjct: 1 CFVSWSKVCQSKDTGVLAVRDPAQVNRASLLLLTWKLITSNEQWAHICRVRFLNNYTPKS 60
Query: 128 HYIHSSIWIGLKSWVDVVIQHS--------NLEHW-----------*WKICFILHSALSM 168
HYI SS+W GLKS + + HS N+ W W I L S + +
Sbjct: 61 HYITSSVWPGLKSNIQYIFYHSIWTVGNGRNIRFWSDKWLDSPIAEHWNIPPSLISDIEL 120
Query: 169 SVSDYIVDGEWNLPTYFHVKDDVLTNKILQTTLPIKPVPDALQW 212
V+D+IV+G W LP Y KD L KI TLP+ +PD L W
Sbjct: 121 KVNDFIVNGTWCLPDYIQQKDPALAAKIQSITLPVDDIPDVLHW 164
>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 123 bits (309), Expect = 9e-27
Identities = 95/348 (27%), Positives = 145/348 (41%), Gaps = 40/348 (11%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
++I+ ++ W R LS GR QL++ VI + + R P + EI I +F+WSG
Sbjct: 47 EKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSG 106
Query: 61 DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTSQDQWAQLCRHILL 120
K VAW+ +C PKDEGGL IR N SLL L + L+S W Q R LL
Sbjct: 107 PELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLL 166
Query: 121 SNAKPKNHYIHSSIWIGLKSWVDVV---------IQH-----SNLEHW--*W-------- 156
K I + +G W ++ ++H SN W W
Sbjct: 167 --RKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLID 224
Query: 157 ----KICFILHSALSMSVSDYIVD---GEWNLPTYFHVKDDVLTNKILQTTLPIKPVPDA 209
+ C + L SV++ +V+ T ++D + + T D
Sbjct: 225 VTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLT----SGEDT 280
Query: 210 LQWLSTTD---GHLTNKLTYLFVRGTCIKVPWHKLVWNTYIPPTRVFICWRFIHNRLPTD 266
++W D K T+ R +KV W+K VW ++ P + W I NRL T
Sbjct: 281 VRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTG 340
Query: 267 ENLRKRGCTIVSICCFCKKQLETSDHIFLRCPVTSQIWDWLNQGINQQ 314
+ + S C C +ET DH+F CP ++++W L + + Q
Sbjct: 341 DRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQ 388
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 122 bits (306), Expect = 2e-26
Identities = 93/339 (27%), Positives = 150/339 (43%), Gaps = 28/339 (8%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
++++ ++ +W R LS GR L++ V+ + + R P+ + E+ K+ F+WSG
Sbjct: 791 EQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSG 850
Query: 61 DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLT-SQDQWAQLCRHIL 119
++W+ +C+PKDEGGL +R N+ L L K ++ S W + L
Sbjct: 851 TEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHL 910
Query: 120 LSNA---KPKNHYIHSS-IWIGLKSWVDVVIQHSNLE--------HW*--WKICFIL--- 162
L NA + K S IW L + +V S +E W W L
Sbjct: 911 LRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLER 970
Query: 163 ---HSALSMSVSDYI-VDGEW-NLPTYFHVKD--DVLTNKILQTTLPIKPVPDALQWLST 215
+ + +S + V+ W N H D +V+ + + ++ D + W
Sbjct: 971 TGDRGLIDLGISRRMTVEEAWTNRRQRRHRNDVYNVIEDALKKSWDTRTETEDKVLWRGK 1030
Query: 216 TDGHLTN---KLTYLFVRGTCIKVPWHKLVWNTYIPPTRVFICWRFIHNRLPTDENLRKR 272
+D T + T+ R T +VPWHK++W ++ P F W H RLPT + +
Sbjct: 1031 SDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINW 1090
Query: 273 GCTIVSICCFCKKQLETSDHIFLRCPVTSQIWDWLNQGI 311
I + C FC+ LET DH+F C TS IW L +GI
Sbjct: 1091 ANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLARGI 1129
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412166|pir||H84629 hypothetical protein
At2g23880 [imported] - Arabidopsis thaliana
Length = 1216
Score = 119 bits (299), Expect = 1e-25
Identities = 89/336 (26%), Positives = 147/336 (43%), Gaps = 35/336 (10%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
D+I+ ++ W R LS GR L+N V+ + + + R P+ +NEI +I +WSG
Sbjct: 512 DQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSG 571
Query: 61 DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTSQDQ-WAQLCRHIL 119
K V+W+ +C+PK EGGL ++ N S L L + L+ QD W + R L
Sbjct: 572 PELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNL 631
Query: 120 LSNAKPKNHYIHSSI--WIG---------LKSWVDVVIQHSN-----LEHW*WKICFI-- 161
L + HS++ WI KS+ + + + ++W K I
Sbjct: 632 LKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKGPLINL 691
Query: 162 --LHSALSMSVSDYIVDGE-W-------NLPTYFHVKDDVLTNKILQTTLPIKPVPDALQ 211
A+ M +S ++ E W + + +++L K + ++ DA+
Sbjct: 692 TGARGAIDMGISRHMTLAEAWSRRRRKRHRVEILNEFEEILLQKYQHRNIELE---DAIL 748
Query: 212 WLSTTD---GHLTNKLTYLFVRGTCIKVPWHKLVWNTYIPPTRVFICWRFIHNRLPTDEN 268
W D + K T+ +R + + WHK VW + P F W I NRL T +
Sbjct: 749 WRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAWLAIRNRLSTGDR 808
Query: 269 LRKRGCTIVSICCFCKKQLETSDHIFLRCPVTSQIW 304
+ + C FC +ET DH+F +C +S+IW
Sbjct: 809 MMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIW 844
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411200|pir||G84473 hypothetical protein
At2g05980 [imported] - Arabidopsis thaliana
Length = 1352
Score = 119 bits (299), Expect = 1e-25
Identities = 89/343 (25%), Positives = 151/343 (43%), Gaps = 36/343 (10%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
++I++++++W R LS GR QL+ V+S + + + R PK L EI K+ F+WSG
Sbjct: 938 EKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSG 997
Query: 61 DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTSQDQ-WAQ-LCRHI 118
K +AW+ +C+ K+EGGL ++ N SLL L + L+++D W + + +H+
Sbjct: 998 PDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHL 1057
Query: 119 LLSN---AKPKNHYIHSSIWIGLKSWVDVVIQHSNLE------------HW*WKICFILH 163
+ + +N + S +W + D +E HW C +
Sbjct: 1058 IRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHW----CPLGR 1113
Query: 164 SALSMSVSDYIVDGEWNLPTYFHVKDDVLTNKILQTTL-PIKPVPDALQWLSTTDG---- 218
M I G N T V + + L IK + + +TDG
Sbjct: 1114 LHQHMGSRGTIDLGIPNNATVAEVMNTHRRKRHRADFLNQIKSQIELARQDRSTDGDRSL 1173
Query: 219 ----------HLTNKLTYLFVRGTCIKVPWHKLVWNTYIPPTRVFICWRFIHNRLPTDEN 268
++ T+ +R ++ W++ VW + P F+ W HNRL T +
Sbjct: 1174 WKQKEDTFKSSFSSSKTWQQIRSISLRCDWYRGVWFSASTPKYSFVTWLAFHNRLTTSDK 1233
Query: 269 LRKRGCTIVSICCFCKKQLETSDHIFLRCPVTSQIWDWLNQGI 311
+ K C FC ++LET DH+F CP +S +W L +G+
Sbjct: 1234 ICKWNSGARYDCVFCGEELETRDHLFFSCPYSSHVWFSLTKGL 1276
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488323|pir||T02730 RNA-directed DNA
polymerase homolog T9I4.6 - Arabidopsis thaliana
Length = 1529
Score = 116 bits (291), Expect = 1e-24
Identities = 97/368 (26%), Positives = 155/368 (41%), Gaps = 36/368 (9%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
+ +K+K+S+W R LS GR L+N VI + + +R P + EI K+ F+WSG
Sbjct: 1088 EAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSG 1147
Query: 61 DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTSQDQ------WAQL 114
K +AW+++C+PK EGGL I+ N S L L + L++Q W +
Sbjct: 1148 PVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFI 1207
Query: 115 CRHILLSNAKPKNHYIHSSIWIGL-------KSWVDVVIQHSN-----LEHW*WKICFIL 162
R +A ++ + S +W L KS V +++ + +HW + +L
Sbjct: 1208 IRKGTFWSANERSS-LGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHW-SHLGRLL 1265
Query: 163 HSALSMSVSDYIVDGEWNLPTYFHVKDD-----VLTNKILQTTLPIKPV-----PDALQW 212
+ V D + E NL T + N+I ++ PD W
Sbjct: 1266 DITGTRRVIDLGIPLETNLETVLRTHQHRQHRAAIYNRINAEIQRLQQQEREAGPDISLW 1325
Query: 213 LSTTDG---HLTNKLTYLFVRGTCIKVPWHKLVWNTYIPPTRVFICWRFIHNRLPTDENL 269
S + K+T+ VR + W+K VW Y P F+ W + NRL T + +
Sbjct: 1326 RSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRI 1385
Query: 270 RKRGCTIVSICCFCKKQLETSDHIFLRCPVTSQIWDWLNQGI---NQQLDLSSCQNLFVK 326
+ + C C ET DH+F C TS +W+ L Q + N D + L
Sbjct: 1386 KAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLSTNYSRDWNRLFTLLCT 1445
Query: 327 QNWRRQYV 334
N R ++
Sbjct: 1446 SNLPRDHL 1453
>ref|NP_189068.1| expressed protein [Arabidopsis thaliana]
Length = 836
Score = 116 bits (291), Expect = 1e-24
Identities = 84/313 (26%), Positives = 135/313 (42%), Gaps = 20/313 (6%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
++I+ ++ W R LS GR QL++ VI + + R P + EI I +F+WSG
Sbjct: 137 EKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSG 196
Query: 61 DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTSQDQWAQLCRHILL 120
K VAW+ +C PKDEGGL IR N S ++ W ++ +H L
Sbjct: 197 PELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGSFWSISGNTTLGSWMWKKILKHRAL 256
Query: 121 SNAKPKNHYIH----SSIWIGLKSWVDVVIQHSNLEHW*WKICFILHSALSMSVSDYIVD 176
++ K H IH +S W S + +I + + C + L SV++ +V+
Sbjct: 257 ASGFVK-HDIHNGSNTSFWFDNWSKIGRLIDVTG-----HRGCIDMGITLHASVAEAVVN 310
Query: 177 ---GEWNLPTYFHVKDDVLTNKILQTTLPIKPVPDALQWLSTTD---GHLTNKLTYLFVR 230
T ++D + + T D ++W D K T+ R
Sbjct: 311 HRPRRHRHDTLLRIEDVIAEVRHQGLT----SGEDTVRWKGNGDIFKPCFNTKETWAATR 366
Query: 231 GTCIKVPWHKLVWNTYIPPTRVFICWRFIHNRLPTDENLRKRGCTIVSICCFCKKQLETS 290
+KV W+K VW ++ P + W I NRL T + + S C C +ET
Sbjct: 367 EPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETR 426
Query: 291 DHIFLRCPVTSQI 303
DH+F CP ++++
Sbjct: 427 DHLFFTCPYSAEV 439
>emb|CAB72467.1| putative protein [Arabidopsis thaliana] gi|11358077|pir||T47440
hypothetical protein T18B22.50 - Arabidopsis thaliana
Length = 762
Score = 106 bits (265), Expect = 1e-21
Identities = 83/324 (25%), Positives = 136/324 (41%), Gaps = 30/324 (9%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
++I+ ++ +W R LS GR L++ +I + + P+ + EI K+ +F+WSG
Sbjct: 344 EQIRKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSG 403
Query: 61 DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTSQDQ-WAQLCRHIL 119
K ++WN +C+PK EGGL +R N+ L L + ++ D W + H L
Sbjct: 404 TNLNSKKAKISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNL 463
Query: 120 LSN----AKPKNHYIHSSIWIGLKSWVDVVIQHSNLE--------HW--*WKICFIL--- 162
L +N + S IW + + V + E W W + L
Sbjct: 464 LKREIFWIVKENANLGSWIWKKILKYRGVAKRFCKAEVGNGESTSFWFDDWSLLGRLIDV 523
Query: 163 ---HSALSMSVSDYI-VDGEWNLPTYFHVKDDVL-TNKILQTTLPIKPVPDALQ----WL 213
+ M +S + V W H + ++L T + + +T K Q W
Sbjct: 524 AGIRGTIDMGISRTMSVADAWTSRRRRHHRQEILNTIEEVLSTQHQKRTQQQQQGRVLWK 583
Query: 214 STTD---GHLTNKLTYLFVRGTCIKVPWHKLVWNTYIPPTRVFICWRFIHNRLPTDENLR 270
D + K T+ ++R T +V WHK VW + P F W H+RL T +
Sbjct: 584 GKNDIYKDKFSTKNTWNYLRTTSNEVAWHKGVWFPHATPKYSFCLWLAAHDRLATGARMI 643
Query: 271 KRGCTIVSICCFCKKQLETSDHIF 294
K C FC++ +ET DH+F
Sbjct: 644 KWNRGETGDCTFCRQGIETRDHLF 667
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 104 bits (259), Expect = 6e-21
Identities = 92/349 (26%), Positives = 148/349 (42%), Gaps = 63/349 (18%)
Query: 6 KLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSGDCNQQ 65
K+ W+ +LLS G+ L+ +++ + Y+ P ++++IT +R F WS +
Sbjct: 230 KMDNWYNKLLSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKH 289
Query: 66 KICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTSQDQWAQLCR--------- 116
KI VAW+ + PK GGLAIRD N A L + + L Q ++ + R
Sbjct: 290 KIPWVAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRIL--QQPFSLMARVFKAKYFPK 347
Query: 117 -HILLSNAKPKNHYIHSSIWIGLK----SWVDVVIQHSNLEHW--*W----------KIC 159
+L + A ++ Y SI G K + +N++ W W C
Sbjct: 348 ERLLDAKATSQSSYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTC 407
Query: 160 FILHSALSMSVSDYIVDGEWNLPTYFHVKDDVLTNKILQTTLP----IKP----VPDALQ 211
++S L VSD +++G WN +D+L I Q +P I+P DA+
Sbjct: 408 DSIYSQL--KVSDLLIEGRWN--------EDLLCKLIHQNDIPHIRAIRPSITGANDAIT 457
Query: 212 WLSTTDGHLTNKLTYLFVRGTCIKVPWHKL---------------VWNTYIPPTRVFICW 256
W+ T DG+ + K Y +R + H +W PP W
Sbjct: 458 WIYTHDGNYSVKSGYHLLRK--LSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWW 515
Query: 257 RFIHNRLPTDENLRKRGCTIVSICCFCKKQLETSDHIFLRCPVTSQIWD 305
R HN LPT NL++R C C + E +H+ +C V+ +IW+
Sbjct: 516 RSAHNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWE 564
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 99.8 bits (247), Expect = 1e-19
Identities = 96/374 (25%), Positives = 152/374 (39%), Gaps = 58/374 (15%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
+R S+L+ W GR LS+ GR L V++ + V+T PK L+++ ++ R+F+W
Sbjct: 18 ERASSRLAGWRGRFLSLAGRLTLTKAVLASLPVHTMTTIVLPKSTLDKLDQLSRSFLWGS 77
Query: 61 DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTSQDQ-WAQLCRHIL 119
++K+ +AW+ +C PK EGGL IR +N A L + + + + WA++ R
Sbjct: 78 TPEKRKLHLIAWDRVCLPKAEGGLGIRSARPMNLALLSKVGWRLMKDRTSLWARVLRSKY 137
Query: 120 LSNAKPKNHYIH-----SSIWIGLKSWV-DVVIQHSNLEHW*WK-ICFILHSALSMSVSD 172
+I+ SS W +KS + +VVI N K ICF L V D
Sbjct: 138 RIGGLRDTTWINTKRNASSTWRSIKSGLREVVIPGMNWVVGDGKDICFWDDKWL---VED 194
Query: 173 YIVD----------------------GEWNLPTYF-HVKDDVLTNKILQTTLPIKPVPDA 209
I D W+L +V + V + + D
Sbjct: 195 PIRDLAAVELPADFQGIKIRELWHEGSGWDLAKIIPYVSEGVRLRLLSMVVDTVTGSNDR 254
Query: 210 LQWLSTTDGHLTNKLTYLFVRGTCIKV----PWHKLVWN-TYIPPTRVFICWRFIHNRLP 264
W +T +G T K Y F+ + + + VW T RVFI W +H +
Sbjct: 255 TSWGATANGQFTVKSAYSFLLQSETQAQNMRQFFDRVWRVTTTERVRVFI-WLVVHQVIM 313
Query: 265 TDENLRKRGCTIVSICCFCKKQLETSDHIFLRCPVTSQIW------------------DW 306
TD R+R + +C CK ET H+ CP + IW DW
Sbjct: 314 TDVERRRRHLSASGVCQVCKGGDETILHVLRDCPSIAGIWGRLVPRGKITAFFASNILDW 373
Query: 307 LNQGINQQLDLSSC 320
+ Q ++ ++ C
Sbjct: 374 VYQNLSDVTEIRGC 387
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 91.3 bits (225), Expect = 5e-17
Identities = 85/345 (24%), Positives = 140/345 (39%), Gaps = 50/345 (14%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
+R+ ++L+ W GR LS+ GR L V+S + V+ P L+ + + R F+W
Sbjct: 633 ERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGS 692
Query: 61 DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTSQDQ-WAQLCRHIL 119
++K ++W +C+PK EGG+ +R +N A + + + L ++ WA++ R
Sbjct: 693 TMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKY 752
Query: 120 -------LSNAKPKNHYIHSSIW----IGLK-------SWV--DVVIQHSNLEHW*WKIC 159
S KP+ + SS W +GL+ WV D L+ W
Sbjct: 753 KVGGVQDTSWLKPQPRW--SSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRW----- 805
Query: 160 FILHSALSMSVSDYIVDGE--------------WNLPTYFHVKDDVLTNKILQTTLPI-K 204
+L L +D I +GE WNL + + ++L + +
Sbjct: 806 -LLQEPLVELGTDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFL 864
Query: 205 PVPDALQWLSTTDGHLTNKLTYLFVRGTCIKVP----WHKLVWNTYIPP-TRVFICWRFI 259
D + W T DG T + Y ++G P + +W P RVFI W
Sbjct: 865 GNGDEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFI-WLVS 923
Query: 260 HNRLPTDENLRKRGCTIVSICCFCKKQLETSDHIFLRCPVTSQIW 304
N + T+ +R + +IC C ET H+ CP IW
Sbjct: 924 QNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIW 968
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana] gi|25411313|pir||C84487 hypothetical protein
At2g07650 [imported] - Arabidopsis thaliana
Length = 732
Score = 90.1 bits (222), Expect = 1e-16
Identities = 82/340 (24%), Positives = 135/340 (39%), Gaps = 40/340 (11%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
+++ ++L+ W GR LS+ GR L V+S + V+T PK L+ + K+ R+F+W
Sbjct: 295 EKLTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGS 354
Query: 61 DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTS-QDQWAQLCR--- 116
Q+K ++W +C+P+ EGGL IR +N A L + + + WA++ R
Sbjct: 355 SVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNY 414
Query: 117 --HILLSNAKPKNHYIHSSIW----IGLK-------SWVDVVIQHSNLEHW--*WKICFI 161
+ A K + SS W +G++ SW V+ + W W
Sbjct: 415 RVQDVRDGAWTKVRSVCSSTWRSVALGMREVVIPGLSW--VIGDGREILFWMDKWLTNIP 472
Query: 162 LHSAL---------SMSVSDYIVDG-EWNLPTYFHVKDDVLTNKILQTTL-PIKPVPDAL 210
L L M D +G W++ T ++ L I D +
Sbjct: 473 LAELLVQEPPAGWKGMRARDLRRNGIGWDMATIAPYISSYNRLQLQSFVLDDITGARDRI 532
Query: 211 QWLSTTDGHLTNKLTYLFVRGTCIKVPWHKL------VWNTYIPPTRVFICWRFIHNRLP 264
W + DG TY F+ T + P + VW+ P W +
Sbjct: 533 SWGESQDGRFKVSTTYSFL--TRDEAPRQDMKRFFDRVWSVTAPERVRLFLWLVAQQAIM 590
Query: 265 TDENLRKRGCTIVSICCFCKKQLETSDHIFLRCPVTSQIW 304
T++ +R + +IC CK E+ H+ CP IW
Sbjct: 591 TNQERHRRHLSTTTICQVCKGAKESIIHVLRDCPAMEGIW 630
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana] gi|7485171|pir||G71420
hypothetical protein - Arabidopsis thaliana
Length = 929
Score = 81.6 bits (200), Expect = 4e-14
Identities = 70/302 (23%), Positives = 128/302 (42%), Gaps = 29/302 (9%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
+R+ S+LS W R LS+ GR L V+ + ++T P +L ++ K+ RNF+W
Sbjct: 568 ERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWGS 627
Query: 61 DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTSQ-DQWAQLCRHIL 119
++K ++W +CRPK GGL +R +N A L + + L + WA++ R
Sbjct: 628 TVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRR-- 685
Query: 120 LSNAKPKNHYIHSSIWIGLK-SW------VDVVIQHSNLEHW*W-------KICFILHSA 165
K K +H S W+ K +W + V ++ + W C +
Sbjct: 686 ----KYKVTDVHDSSWLVPKATWSSTWRSIGVGLREGVAKGWILHEPLCTRATCLLSPEE 741
Query: 166 LSMSVSDYIVDG-EWNLPTYFHVKDDVLTNKILQTTLP-IKPVPDALQWLSTTDGHLTNK 223
L+ V ++ +G W++ +T+++ + + + D + W T+DG T
Sbjct: 742 LNARVEEFWTEGVGWDMVKLGQCLPRSVTDRLHAVVIKGVLGLRDRISWQGTSDGDFTVG 801
Query: 224 LTYLFVRGTCIKVP----WHKLVWNTYIPP-TRVFICWRFIHNRLPTDENLRKRGCTIVS 278
Y+ + P + K +W P RVF+ W + T+ +R +
Sbjct: 802 SAYVLLTQEEESKPCMESFFKRIWGVIAPERVRVFL-WLVGQQVIMTNVERVRRHIGDIE 860
Query: 279 IC 280
+C
Sbjct: 861 VC 862
>gb|AAG51754.1| reverse transcriptase, putative; 100033-105622 [Arabidopsis thaliana]
gi|25403084|pir||G86419 probable reverse transcriptase,
100033-105622 [imported] - Arabidopsis thaliana
Length = 1557
Score = 79.3 bits (194), Expect = 2e-13
Identities = 78/324 (24%), Positives = 133/324 (40%), Gaps = 44/324 (13%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
DR+KS+LS W R+LS+ G+ L+ V M VY + K ++ + +F W+
Sbjct: 1079 DRLKSRLSGWFARILSLGGKQILLKAVAMAMPVYAISCFKLTKTTCENLSSAMADFWWNA 1138
Query: 61 DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVN---NASLLHLTRKFLTSQDQWAQLCRH 117
+++K V+W MC K+ GG D + A + R L +D
Sbjct: 1139 LEHKRKTHWVSWEKMCLSKENGGRYFPDEDFLEADLGARPSYAWRSVLHGRD-------- 1190
Query: 118 ILLSNAKPKNHYIHSSIWIGLKSWV-DVVIQHSNLEHW*WKICFILHSALSMSVSDYI-V 175
LL+ K +SI + + +W+ D + +H+ +L++ V D I +
Sbjct: 1191 -LLTKGLRKEIGNGNSISVWMDNWIYDNGPRIPLQKHF--------SVSLNLRVKDLINL 1241
Query: 176 DGE-WN----LPTYFHVKDDVLTNKILQTTLPIKPVPDALQWLSTTDGHLTNKLTYLFVR 230
DG WN +F V D++ K P+ + D WL + G + K Y V
Sbjct: 1242 DGRCWNRDLLQDLFFQVDIDLICKK-----KPVVDMDDFWVWLHSKSGEYSVKSGYWLVF 1296
Query: 231 GT---------CIKVPWHKL---VWNTYIPPTRVFICWRFIHNRLPTDENLRKRGCTIVS 278
+ C + + L +W+T P WR + LP + + +RG +
Sbjct: 1297 QSNKPELLFKACRQPSTNGLKEKIWSTSTFPKIKLFLWRILSAALPVADQILRRGMNVDP 1356
Query: 279 ICCFCKKQLETSDHIFLRCPVTSQ 302
C C ++ E+ +H+ C V Q
Sbjct: 1357 CCQICGQEGESINHVLFTCSVARQ 1380
>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 489
Score = 77.4 bits (189), Expect = 7e-13
Identities = 47/159 (29%), Positives = 78/159 (48%), Gaps = 20/159 (12%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
+ IK K+ +W R LS GR L++ V+ + + R P+ + EI K+ ++WSG
Sbjct: 173 EHIKKKIGSWSARFLSYAGRLNLISSVLWSICNFWMGAFRLPRECIREIDKMCSAYLWSG 232
Query: 61 -DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTSQDQ-WAQLCRHI 118
D N K +AW +C+PKDEGGL +R N+ S L L + ++ D W +
Sbjct: 233 GDLNTSK-AKIAWTDVCKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVK----- 286
Query: 119 LLSNAKPKNHYIHSSIWIGLKSWVDVVIQHSNLEHW*WK 157
+IH+++ + W V ++++L W WK
Sbjct: 287 ----------WIHATLLKQVSFW--AVRENTSLGSWMWK 313
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana] gi|7488317|pir||T01610
RNA-directed DNA polymerase homolog At2g18820 -
Arabidopsis thaliana
Length = 1412
Score = 76.6 bits (187), Expect = 1e-12
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
++I+S++S+W R LS GR QL+N VIS + + R P+ + EI +I F+WSG
Sbjct: 1046 EKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSG 1105
Query: 61 -DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTSQ 108
D N K VAW+ +C+PK EGGL +R N L + ++++
Sbjct: 1106 TDLNPHK-AKVAWHDVCKPKSEGGLGLRSLVDANKICCFKLIWRLVSAK 1153
Score = 60.8 bits (146), Expect = 7e-08
Identities = 26/72 (36%), Positives = 36/72 (49%)
Query: 238 WHKLVWNTYIPPTRVFICWRFIHNRLPTDENLRKRGCTIVSICCFCKKQLETSDHIFLRC 297
WHK +W + P FI W H+RL T + + I S+C C E+ DH+F C
Sbjct: 1239 WHKAIWFSGATPKFTFISWLAAHDRLTTGDKMASWNRGISSVCVLCNISAESRDHLFFSC 1298
Query: 298 PVTSQIWDWLNQ 309
+S IWD L +
Sbjct: 1299 NFSSHIWDRLTR 1310
>gb|AAD32866.1| F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 76.6 bits (187), Expect = 1e-12
Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 20/214 (9%)
Query: 111 WAQLCRHILLSNAKPKNHYIHSSIWIGLKS--WVDVVIQHSNLEHW*WKICFILHSA-LS 167
W +LC+ L A+P +I + G+ + W D H L H +L L+
Sbjct: 855 WRKLCK--LRPFARP---FIICEVGSGVTASFWHDNWTDHGPLLHLTGPAGPLLAGLPLN 909
Query: 168 MSVSDYIVDGEWNLPTYFHVKDDVLTNKILQTTLPIK------PVPDALQWL---STTDG 218
V D + D W + + ++ V+T +LQ LP P D W
Sbjct: 910 SVVRDALRDDTWRISSS-RSRNPVIT--LLQRVLPSAASLIDCPHDDTYLWKIGHHAPSN 966
Query: 219 HLTNKLTYLFVRGTCIKVPWHKLVWNTYIPPTRVFICWRFIHNRLPTDENLRKRGCTIVS 278
+ T+ +++ + V WHK VW P + FICW HNRL T + LR+ G +I
Sbjct: 967 RFSTADTWSYLQPSSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFSIPP 1026
Query: 279 ICCFCKKQLETSDHIFLRCPVTSQIWDWLNQGIN 312
C C E+ +H+F RC +S+IW + + +N
Sbjct: 1027 TCVLCNDLDESREHLFFRCQFSSEIWSFFMRALN 1060
>gb|AAP53939.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534700|ref|NP_921652.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1652
Score = 75.9 bits (185), Expect = 2e-12
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
+RI+ KLS+W G+ LS+ GR L+N V+S + ++ PK IL ++ F W
Sbjct: 1485 ERIQKKLSSWKGKFLSVGGRLVLINSVLSNLAIFMLSFFEIPKGILKKLDYYRSRFFWQC 1544
Query: 61 DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTSQDQWAQLCRHILL 120
D +++K W+ +C+PK+ GGL I++ + N L K + + W + R+ L
Sbjct: 1545 DEHKKKYRLARWSVLCKPKECGGLGIQNLEIQNKCLLSKWLYKLINEEGVWQDILRNKYL 1604
Query: 121 SN---AKPKNHYIHSSIWIGLKSWVDV 144
+ + + S W GL DV
Sbjct: 1605 TKKTITQVEKCPGDSHFWAGLMGVRDV 1631
>ref|NP_680602.1| hypothetical protein [Arabidopsis thaliana]
Length = 219
Score = 75.5 bits (184), Expect = 3e-12
Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 208 DALQWLSTTDGHLTN---KLTYLFVRGTCIKVPWHKLVWNTYIPPTRVFICWRFIHNRLP 264
D + W +D T + T+ R T +VPWHK++W ++ P F W H RLP
Sbjct: 19 DKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLP 78
Query: 265 TDENLRKRGCTIVSICCFCKKQLETSDHIFLRCPVTSQIWDWLNQGI 311
T + + + C FC+ LET DH+F C TS IW L +GI
Sbjct: 79 TGDRMINWANGTATDCIFCQGTLETRDHLFFTCSFTSAIWVDLARGI 125
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411565|pir||B84517 hypothetical protein
At2g14430 [imported] - Arabidopsis thaliana
Length = 1277
Score = 75.1 bits (183), Expect = 4e-12
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 7/150 (4%)
Query: 1 DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHIHRWPKIILNEITKIIRNFVWSG 60
D+++SK+S+W R LS GR L+N VI + + +R P + EI K+ F+WSG
Sbjct: 933 DKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSG 992
Query: 61 DCNQQKICTVAWNTMCRPKDEGGLAIRDPFMVNNASLLHLTRKFLTSQDQ------WAQL 114
K + W ++C+ K EGGL I+ N S L L + ++ Q W +
Sbjct: 993 PELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYI 1052
Query: 115 CRHILLSNAKPKNHYIHSSIWIGLKSWVDV 144
R +A ++ + S +W L ++ DV
Sbjct: 1053 IRKGSFWSANDRSS-LGSWMWKKLLNYRDV 1081
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.333 0.142 0.502
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 710,663,679
Number of Sequences: 2540612
Number of extensions: 28944536
Number of successful extensions: 101503
Number of sequences better than 10.0: 335
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 100923
Number of HSP's gapped (non-prelim): 517
length of query: 408
length of database: 863,360,394
effective HSP length: 130
effective length of query: 278
effective length of database: 533,080,834
effective search space: 148196471852
effective search space used: 148196471852
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 76 (33.9 bits)
Medicago: description of AC127021.6