BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127021.2 - phase: 0
(377 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 113 8e-24
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 94 5e-18
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 92 2e-17
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 90 1e-16
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 90 1e-16
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 90 1e-16
gb|AAP53436.1| putative retroelement [Oryza sativa (japonica cul... 89 2e-16
ref|XP_471624.1| OSJNBa0029L02.10 [Oryza sativa (japonica cultiv... 87 6e-16
ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica... 86 2e-15
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 86 2e-15
emb|CAI44611.1| P0650D04.15 [Oryza sativa (japonica cultivar-gro... 83 1e-14
emb|CAE05959.1| OSJNBb0088C09.18 [Oryza sativa (japonica cultiva... 83 2e-14
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 83 2e-14
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 82 2e-14
gb|AAX96297.1| retrotransposon protein, putative, unclassified [... 82 3e-14
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 81 6e-14
gb|AAX95804.1| retrotransposon protein, putative, unclassified [... 81 6e-14
gb|AAF18538.1| Very similar to retrotransposon reverse transcrip... 80 1e-13
emb|CAD40747.2| OSJNBa0072D21.1 [Oryza sativa (japonica cultivar... 80 1e-13
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 79 2e-13
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 113 bits (283), Expect = 8e-24
Identities = 84/289 (29%), Positives = 137/289 (47%), Gaps = 25/289 (8%)
Query: 6 GGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRG----RLREGGVTGSAW 61
GGLGV L+ N A+LGKW WR L + EG W +++ ++Y + RL+ G S +
Sbjct: 657 GGLGVLDLEAMNKAMLGKWIWR-LENEEGWWQEIIYAKYCSDKPLSGLRLKAGS---SHF 712
Query: 62 WREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHK 121
W+ ++++++ F +K +GNG T FW D W+G +F LY + I K
Sbjct: 713 WQGVMEVKDD--------FFSFCTKIVGNGEKTLFWEDSWLGGKPLAIQFPSLYGIVITK 764
Query: 122 DLSVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNIG 181
+++ +++ G + ++RR L + +I N + L + D W +
Sbjct: 765 RITIADLNRKGI----DCMKFRRDLHGDKLRDWRKIVNSWEGLNLVENCKDKLWWTLSKD 820
Query: 182 DGYTVRGVYQMLMRQEVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRRGVI 241
+TVR Y+ L Q+ + W VPLK+ I W +N+ TKDNL++RG
Sbjct: 821 GKFTVRSFYRALKLQQT---SFPNKKIWKFRVPLKIRIFIWFFTKNKILTKDNLLKRGWR 877
Query: 242 TNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQQVL 290
D + + C K ET+ HL C + +W I + V V +Q L
Sbjct: 878 KGDNK--CQFCDKVETVQHLFFDCPLARLIWNIIACALNVKPVLSRQDL 924
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488322|pir||T00814 RNA-directed DNA
polymerase homolog At2g41580 - Arabidopsis thaliana
Length = 1094
Score = 94.4 bits (233), Expect = 5e-18
Identities = 93/375 (24%), Positives = 155/375 (40%), Gaps = 53/375 (14%)
Query: 1 MSKGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRL-REGGVTGS 59
+ K +GG G + LQ FN ALL K R D + L ++L SRY L G S
Sbjct: 575 LPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPS 634
Query: 60 AWWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSI 119
W+ I + G + K +GNG NT+ W D W+ F ++ RR L I
Sbjct: 635 YAWQSI--------LYGRELLVSGLKKIIGNGENTYVWMDNWI----FDDKPRRPESLQI 682
Query: 120 HKDLSVGEMHALGWGEDGEAWRWRRRLLAWEE-ELVVEIRNLLTNVTLQDTQPDVWLWQP 178
D+ + + R L W+E +++ + R + ++ D + W
Sbjct: 683 MVDIQLKVSQLIDPFSRNWNLNMLRDLFPWKEIQIICQQRPMA-------SRQDSFCWFG 735
Query: 179 NIGDGYTVRGVYQMLMRQEVHNH--DVVSDAP---------WHKSVPLKVSICAWRLLRN 227
YTV+ Y + RQ VH + P W+ + K+ + W++L+
Sbjct: 736 TNHGLYTVKSEYDLCSRQ-VHKQMFKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKG 794
Query: 228 RWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQ 287
+D L RGV+ D C KNET++H++ C + +W ++ P
Sbjct: 795 AVAVEDRLRTRGVLIEDG--CSMCPEKNETLNHILFQCPLARQVW----------ALTPM 842
Query: 288 QVLDH-YYQFVYSS------GCYNPRRS-FLQLIWLCGIWVLSNERNQRLFTNTARTTVQ 339
Q +H + ++++ C+N S L+ + IW+L RN+RLF ++
Sbjct: 843 QSPNHGFGDSIFTNVNHVIGNCHNTELSPHLRYVSPWIIWILWKNRNKRLFEGIGSVSLS 902
Query: 340 LLENVKITSLKWLKA 354
++ +WLKA
Sbjct: 903 IVGKALEDCKEWLKA 917
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 92.4 bits (228), Expect = 2e-17
Identities = 72/272 (26%), Positives = 122/272 (44%), Gaps = 21/272 (7%)
Query: 3 KGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTGSA-W 61
K GGLG ++ NIALL KW +R +E +L ++Y + G + S+ +
Sbjct: 385 KEFGGLGFIDTRKMNIALLCKWIYRLESGKEDPCCVLLRNKYMKDGGGFFQSKAEESSQF 444
Query: 62 WREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHK 121
W+ + +++ W + S ++GNG T FWSD W+G ++ +Y + K
Sbjct: 445 WKGLHEVKK--------WMDLGSSYKVGNGKATNFWSDVWIGETPLKTQYPNIYRMCADK 496
Query: 122 DLSVGEMHALG-WGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNI 180
+ +V +M G W + R L W ++ N + L++ + D +W+
Sbjct: 497 EKTVSQMCLEGDWYIELRRSLGERDLNEWN-----DLHNTPREIHLKE-ERDCIIWKLTK 550
Query: 181 GDGYTVRGVYQMLMRQEVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRRGV 240
Y + +YQ L V D V W S+PLKV I W +L+ R L + +
Sbjct: 551 NGFYKAKTLYQALSFGGV--KDKVMQDLWRSSIPLKVKILFWLMLKGRIQAAGQL--KKM 606
Query: 241 ITNDTQLCVRGCGKNETIDHLIIHCLIFGDLW 272
+ + C + CG+ E +DHL+ C I +W
Sbjct: 607 KWSGSPNC-KLCGQTEDVDHLMFRCHISQFMW 637
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 89.7 bits (221), Expect = 1e-16
Identities = 93/385 (24%), Positives = 153/385 (39%), Gaps = 71/385 (18%)
Query: 1 MSKGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRL-REGGVTGS 59
+ K GG G + LQ FN ALL K WR L ++ L+ +V SRY L G S
Sbjct: 824 LPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPS 883
Query: 60 AWWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSI 119
WR I + G + + +GNG TF W+D W+ S R +++
Sbjct: 884 YAWRSI--------LFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINV 935
Query: 120 HKDLSVGEMHALGWGEDGEAWRWR----RRLLAWEE-ELVVEIRNLLTNVTLQDTQPDVW 174
DL V ++ D + W R L W++ E++++ R L + D +
Sbjct: 936 --DLKVSQL------IDPTSRNWNLNMLRDLFPWKDVEIILKQRPLF-------FKEDSF 980
Query: 175 LWQPNIGDGYTVRGVYQMLMRQEVH----------NHDVVSDAPWHKSVPLKVSICAWRL 224
W + Y+V+ Y+ L +Q H + + + D W+ K+ I W+
Sbjct: 981 CWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKA 1040
Query: 225 LRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLW------------ 272
L P +D L RG+ ++D C+ +NETI+H++ C + +W
Sbjct: 1041 LHGAIPVEDRLRTRGIRSDDG--CLMCDTENETINHILFECPLARQVWAITHLSSAGSEF 1098
Query: 273 -QRIKTWIG-VFSVDPQQVLDHYYQFVYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLF 330
+ T + + + Q L H+ +FV W+ +W L RN LF
Sbjct: 1099 SNSVYTNMSRLIDLTQQNDLPHHLRFVSP--------------WI--LWFLWKNRNALLF 1142
Query: 331 TNTARTTVQLLENVKITSLKWLKAK 355
T L++ +W A+
Sbjct: 1143 EGKGSITTTLVDKAYEAYHEWFSAQ 1167
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 89.7 bits (221), Expect = 1e-16
Identities = 97/382 (25%), Positives = 152/382 (39%), Gaps = 68/382 (17%)
Query: 3 KGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTGSAW- 61
K +GGL +R L++FNIALL K WR L L +V ++Y + L + S++
Sbjct: 303 KKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKATSQSSYA 362
Query: 62 WREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCW---------VGTVSFMERFR 112
W+ I + G + GNG N W D W VGT
Sbjct: 363 WKSI--------LHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCD------ 408
Query: 113 RLYDLSIHKDLSVGEMHALGWGEDGEAWRWRRRLLA--WEEELVVEIRNLLTNVTLQDTQ 170
SI+ L V ++ G RW LL + + IR + ++T +
Sbjct: 409 -----SIYSQLKVSDLLIEG--------RWNEDLLCKLIHQNDIPHIRAIRPSITGAN-- 453
Query: 171 PDVWLWQPNIGDGYTVRGVYQMLMRQEVHNH-----------DVVSDAPWHKSVPLKVSI 219
D W Y+V+ Y +L + H V W ++ P K+
Sbjct: 454 -DAITWIYTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKH 512
Query: 220 CAWRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGK-NETIDHLIIHCLIFGDLWQR--IK 276
WR N PT NL RR +IT+DT C R CG+ +E ++HL+ C + ++W++ IK
Sbjct: 513 FWWRSAHNALPTAGNLKRRRLITDDT--CQR-CGEASEDVNHLLFQCRVSKEIWEQAHIK 569
Query: 277 TWIG--VFSVDPQQVLDHYYQFVYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTA 334
G + S Q L+ + S+ R + L G W + RN +F N
Sbjct: 570 LCPGDSLMSNSFNQNLESIQKLNQSA------RKDVSLFPFIG-WRIWKMRNDLIFNNKR 622
Query: 335 RTTVQLLENVKITSLKWLKAKN 356
+ ++ I +W ++ N
Sbjct: 623 WSIPDSIQKALIDQQQWKESLN 644
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 89.7 bits (221), Expect = 1e-16
Identities = 93/385 (24%), Positives = 153/385 (39%), Gaps = 71/385 (18%)
Query: 1 MSKGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRL-REGGVTGS 59
+ K GG G + LQ FN ALL K WR L ++ L+ +V SRY L G S
Sbjct: 845 LPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPS 904
Query: 60 AWWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSI 119
WR I + G + + +GNG TF W+D W+ S R +++
Sbjct: 905 YAWRSI--------LFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINV 956
Query: 120 HKDLSVGEMHALGWGEDGEAWRWR----RRLLAWEE-ELVVEIRNLLTNVTLQDTQPDVW 174
DL V ++ D + W R L W++ E++++ R L + D +
Sbjct: 957 --DLKVSQL------IDPTSRNWNLNMLRDLFPWKDVEIILKQRPLF-------FKEDSF 1001
Query: 175 LWQPNIGDGYTVRGVYQMLMRQEVH----------NHDVVSDAPWHKSVPLKVSICAWRL 224
W + Y+V+ Y+ L +Q H + + + D W+ K+ I W+
Sbjct: 1002 CWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKA 1061
Query: 225 LRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLW------------ 272
L P +D L RG+ ++D C+ +NETI+H++ C + +W
Sbjct: 1062 LHGAIPVEDRLRTRGIRSDDG--CLMCDTENETINHILFECPLARQVWAITHLSSAGSEF 1119
Query: 273 -QRIKTWIG-VFSVDPQQVLDHYYQFVYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLF 330
+ T + + + Q L H+ +FV W+ +W L RN LF
Sbjct: 1120 SNSVYTNMSRLIDLTQQNDLPHHLRFVSP--------------WI--LWFLWKNRNALLF 1163
Query: 331 TNTARTTVQLLENVKITSLKWLKAK 355
T L++ +W A+
Sbjct: 1164 EGKGSITTTLVDKAYEAYHEWFSAQ 1188
>gb|AAP53436.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533694|ref|NP_921149.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19920114|gb|AAM08546.1| Putative retroelement [Oryza
sativa]
Length = 586
Score = 89.0 bits (219), Expect = 2e-16
Identities = 59/198 (29%), Positives = 100/198 (49%), Gaps = 24/198 (12%)
Query: 6 GGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTG-SAWWRE 64
GG+G+ L+ NIALLGKW W L +++G W ++L +Y ++ L G S +W+
Sbjct: 332 GGMGILDLEIMNIALLGKWLWN-LENKDGWWQEILRDKYLSKKTLLGMKKKPGDSHFWQG 390
Query: 65 IVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHKDLS 124
+++I+N F + SK+LG+G T FW D W+G +F L++++ K +
Sbjct: 391 LMEIKNS--------FYKFCSKKLGDGKQTLFWEDNWIGGRPLALQFPTLFNITTTKQII 442
Query: 125 VGEMHALGWGEDGEAWRWRR-----RLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPN 179
V ++ GW +A ++RR RL+ W +I+ +TLQ+ D W+
Sbjct: 443 VSKVMLGGW----DAIKFRRTLHGDRLMEWN-----KIKQSCVGLTLQEGVRDKIWWKLT 493
Query: 180 IGDGYTVRGVYQMLMRQE 197
+TV+ Y L Q+
Sbjct: 494 KDGSFTVKSFYLALKMQQ 511
>ref|XP_471624.1| OSJNBa0029L02.10 [Oryza sativa (japonica cultivar-group)]
gi|39546220|emb|CAE04469.3| OSJNBa0029L02.10 [Oryza
sativa (japonica cultivar-group)]
Length = 389
Score = 87.4 bits (215), Expect = 6e-16
Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 15/204 (7%)
Query: 88 LGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHKDLSVGEMHALGWGEDGEAWRWRRRLL 147
+GNG NT FW D W+G E+FR LY++++ K ++V ++ +G ++ ++RR +L
Sbjct: 15 VGNGRNTLFWEDNWIGGKPLAEQFRDLYNITLTKKITVADVKQVGI----DSIKFRRDVL 70
Query: 148 AWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNIGDGYTVRGVYQML-MRQEVHNHDVVSD 206
+++I+ +++ L+D D W +TV+ + L M+Q + H +
Sbjct: 71 G---NKLLKIKQSWSDLVLEDGTRDTLRWNLTKDGKFTVKSFHTALKMQQVIFPHKKI-- 125
Query: 207 APWHKSVPLKVSICAWRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCL 266
W VPLK+ I W +N+ TKDNL +RG + + C + ET+ L +C
Sbjct: 126 --WGLKVPLKIKIFIWMFTKNKILTKDNLFKRG--WRKGKANCQFCDQTETLQPL-FYCP 180
Query: 267 IFGDLWQRIKTWIGVFSVDPQQVL 290
+ LW +K + + SV +Q L
Sbjct: 181 LARLLWNIVKCALNINSVLNRQDL 204
>ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 486
Score = 85.9 bits (211), Expect = 2e-15
Identities = 71/265 (26%), Positives = 117/265 (43%), Gaps = 23/265 (8%)
Query: 3 KGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTG-SAW 61
K GGLGV L N LL KW ++ L++ EGLW +L ++Y + + G S +
Sbjct: 149 KDQGGLGVLNLDIMNRCLLSKWLFK-LLNGEGLWQNLLRNKYLKGKPLSHMSHKPGTSQF 207
Query: 62 WREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHK 121
W ++K+++ G S + GNG FW D W+G ++ LY++ +
Sbjct: 208 WAGLMKVKDQFFQYG--------SFKPGNGMEIRFWEDTWLGLQPLKYQYPSLYNVVRKR 259
Query: 122 DLSVGE-MHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNI 180
++ E M +L+ W + + + L N+TL + + D ++W
Sbjct: 260 HSTLVEVMSTTPLNVSFRRSIVGPKLVEWNDLI-----SRLANITLSN-EKDCFIWSLYK 313
Query: 181 GDGYTVRGVYQMLMRQEVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRRGV 240
++V+ +Y ++ V H + W VPLK+ + W L + TKDNL++R
Sbjct: 314 NGHFSVKSMYNAIINSNVIIHKRIL---WKVKVPLKIKVFMWFLHKKVILTKDNLIKRKW 370
Query: 241 ITNDTQLCVRGCGKNETIDHLIIHC 265
N Q C C ETI H C
Sbjct: 371 RGN-KQCCF--CNTQETIQHFFFDC 392
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 85.5 bits (210), Expect = 2e-15
Identities = 75/276 (27%), Positives = 116/276 (41%), Gaps = 27/276 (9%)
Query: 3 KGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREG-GVTGSAW 61
K VGGLG + ++ FNIALLGK WR + +++ L KV SRY + L G S
Sbjct: 848 KAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFA 907
Query: 62 WREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGT--VSFMERFRRLYDLSI 119
W+ I + Q I ++ I +GNG W+D W+G + +R + +S
Sbjct: 908 WKSIYEAQVLI--------KQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQ 959
Query: 120 HKDLSVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPN 179
+ S+ + L DG W W L + + N+L D + W+ +
Sbjct: 960 YAANSIHVVKDL-LLPDGRDWNWNLVSLLFPDNTQ---ENILALRPGGKETRDRFTWEYS 1015
Query: 180 IGDGYTVRGVYQMLMR--------QEV--HNHDVVSDAPWHKSVPLKVSICAWRLLRNRW 229
Y+V+ Y ++ QEV + D + W VP K+ WR + N
Sbjct: 1016 RSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCL 1075
Query: 230 PTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHC 265
NL R + + CVR ET++HL+ C
Sbjct: 1076 SVASNLAYRHLAREKS--CVRCPSHGETVNHLLFKC 1109
>emb|CAI44611.1| P0650D04.15 [Oryza sativa (japonica cultivar-group)]
Length = 1579
Score = 83.2 bits (204), Expect = 1e-14
Identities = 71/272 (26%), Positives = 123/272 (45%), Gaps = 23/272 (8%)
Query: 3 KGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRY--GEQRGRLREGGVTGSA 60
K GGLG ++ NIALL KW + + + L ++L +Y E + G V S
Sbjct: 1218 KDFGGLGFTETRKMNIALLAKWIMKVDSEDKSLCIELLRKKYLTNESFFSCKIGNV--SQ 1275
Query: 61 WWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIH 120
+WR ++ I+ G + G W +GNG + FW D W G M F +Y +
Sbjct: 1276 FWRGLLNIR-GWMMLGAEW-------SIGNGLSVKFWKDTWFGNCPLMTLFPAIYRVCNQ 1327
Query: 121 KDLSVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNI 180
+++ V + +G G G +RR E E +++ ++ + L DT D W N
Sbjct: 1328 QEILVSQ---VGQGGPG-CLSFRRSFGPEELEEWNDLKEIIDQIVLSDTH-DKLNWGLNA 1382
Query: 181 GDGYTVRGVYQMLMRQEVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRRGV 240
YT R +Y+ L + + + V+ W P+K LR+R + + L ++
Sbjct: 1383 NKKYTTRSLYRALTFRGIGD---VNAKMWGCPCPMKHKHFLSLALRDRIQSAEQLKKKN- 1438
Query: 241 ITNDTQLCVRGCGKNETIDHLIIHCLIFGDLW 272
++ C + CG+ ET +H++ +C + +W
Sbjct: 1439 -WEGSEFC-QLCGELETTNHILFNCPMARFVW 1468
>emb|CAE05959.1| OSJNBb0088C09.18 [Oryza sativa (japonica cultivar-group)]
gi|32487797|emb|CAE05420.1| OSJNBa0035I04.8 [Oryza
sativa (japonica cultivar-group)]
Length = 357
Score = 82.8 bits (203), Expect = 2e-14
Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 18/236 (7%)
Query: 3 KGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTG-SAW 61
K GGLG++ L+ N +L KW ++ L + EG+W +L +Y ++ +G S +
Sbjct: 119 KECGGLGIQNLELQNKYMLSKWLYK-LWNEEGVWQNLLRRKYLSKKTLTHVDKKSGDSHF 177
Query: 62 WREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHK 121
W ++ ++N F S ++ NG FW D W G F R+ LY+L I+K
Sbjct: 178 WSGLMMVKN--------IFLSCGSLKVHNGTQVRFWEDKWNGNTPFAARYPALYNLVINK 229
Query: 122 DLSVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNIG 181
+ SV A+ + +RR ++ + +E+ + + ++ L + Q +LW+
Sbjct: 230 NESV----AVVMSKRPLKVSFRRAMVGHNLKAWLEVVSKVISIKLTE-QNGTFLWEIQKN 284
Query: 182 DGYTVRGVYQMLMRQEVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVR 237
++V +Y+ +M +EV D W +PLK+ I W L TKDNL +
Sbjct: 285 GCFSVNSMYKAIMYREVVPK---KDMIWKLRIPLKIKIFLWYLKNGVILTKDNLAK 337
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 82.8 bits (203), Expect = 2e-14
Identities = 84/375 (22%), Positives = 153/375 (40%), Gaps = 50/375 (13%)
Query: 1 MSKGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRL-REGGVTGS 59
+SK GGLG R ++ FN ALL K WR L L+ + SRY ++ L E T S
Sbjct: 848 LSKENGGLGFRDIESFNQALLAKQAWRLLQFPNSLFARFFKSRYYDEEDFLDAELKATPS 907
Query: 60 AWWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWV----GTVSFMERFRRLY 115
WR I + G + K++GNG +T W D W+ + + F
Sbjct: 908 YAWRSI--------LHGRDLLIKGFRKKVGNGSSTSVWMDPWIYDNDPRLPLQKHFSVNL 959
Query: 116 DLSIHKDLSVGEMHALGWGEDGEAWRWRRRLLAWEEEL-VVEIRNLLTNVTLQDTQPDVW 174
DL +H ++V ED R R L + ++ ++ RN + ++ D W
Sbjct: 960 DLRVHDLINV---------EDRCRRRDRLEELFYPADIEIIVKRNPVVSM------DDFW 1004
Query: 175 LWQPNIGDGYTVRGVYQMLMRQEVHNHDVVSDAP------------WHKSVPLKVSICAW 222
+W + Y+V+ Y + + + +++ +A W K+ + W
Sbjct: 1005 VWLHSKSGEYSVKSGYWLAF--QTNKPELIREARVQPSTNGLKEKIWSTLTSPKIKLFLW 1062
Query: 223 RLLRNRWPTKDNLVRRGV-ITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGV 281
R+L + P ++RRG+ I Q+C + E+I+H++ C + +W
Sbjct: 1063 RILSSALPVAYQIIRRGMPIDPRCQVCGE---EGESINHVLFTCSLARQVWALSGVPTSQ 1119
Query: 282 FSVDPQQVLDHYYQFVYSSG-CYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQL 340
F + + + G P + ++ W +W L R++ F T + ++
Sbjct: 1120 FGFQNSSIFANIQYLLELKGKGLIPEQ--IKKSWPWVLWRLWKNRDKLFFEGTIFSPLKS 1177
Query: 341 LENVKITSLKWLKAK 355
+E ++ +W A+
Sbjct: 1178 IEKIRDDVQEWFLAQ 1192
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 82.4 bits (202), Expect = 2e-14
Identities = 90/373 (24%), Positives = 144/373 (38%), Gaps = 47/373 (12%)
Query: 1 MSKGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLR-EGGVTGS 59
+ K +GG G + LQ FN ALL K WR D + + ++ SRY L G S
Sbjct: 798 LPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPS 857
Query: 60 AWWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSI 119
WR I + G + + +GNG T W D W+ F RR +L
Sbjct: 858 YTWRSI--------LYGRELLNGGLKRLIGNGEQTNVWIDKWL----FDGHSRRPMNLHS 905
Query: 120 HKDLSVGEMHALGWGEDGEAWRWRRRLLA-----WEEELVVEIRNLLTNVTLQDTQPDVW 174
++ + H + D W + L + +L++ R L+++ D +
Sbjct: 906 LMNIHMKVSHLI----DPLTRNWNLKKLTELFHEKDVQLIMHQRPLISS-------EDSY 954
Query: 175 LWQPNIGDGYTVRGVYQMLMRQEVHN----HDV------VSDAPWHKSVPLKVSICAWRL 224
W YTV+ Y+ R+ N DV + D W K+ + W+
Sbjct: 955 CWAGTNNGLYTVKSGYERSSRETFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKA 1014
Query: 225 LRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLW--QRIKTWIGVF 282
L+ +D L RG+ T D C+ + ETI+HL+ C +W I+ F
Sbjct: 1015 LKGALAVEDRLRSRGIRTADG--CLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGF 1072
Query: 283 SVDPQQVLDHYYQFVYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQLLE 342
++H Q + G PR WL +W + RN+ LF T T+ +++
Sbjct: 1073 GTSIFSNINHVIQNSQNFGI--PRHMRTVSPWL--LWEIWKNRNKTLFQGTGLTSSEIVA 1128
Query: 343 NVKITSLKWLKAK 355
W+ A+
Sbjct: 1129 KAYEECNLWINAQ 1141
>gb|AAX96297.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 281
Score = 81.6 bits (200), Expect = 3e-14
Identities = 72/283 (25%), Positives = 118/283 (41%), Gaps = 45/283 (15%)
Query: 59 SAWWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLS 118
S +W +++I+N F + SK +GNG T FW D W+G E+F LY+++
Sbjct: 16 SHFWHGLMEIKN--------IFLKFCSKVIGNGEKTLFWEDSWIGGKPLNEQFPNLYNIT 67
Query: 119 IHKDLSVGEMHALGWG--------EDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQ 170
+ K ++V ++ G G W + +W + V L+D
Sbjct: 68 LTKHITVAKLKQKGINCIKFTRDLSGGRLRDWHKICTSWGD------------VQLKDNC 115
Query: 171 PDVWLWQPNIGDGYTVRGVYQMLMRQEVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWP 230
+ W N+ TV Y+ L Q+VH W PLK+ + W +NR
Sbjct: 116 NNKLRW--NLTKDGTVNSFYKALKLQQVH---FPQKKIWKFRTPLKIKVFLWLFTKNRIL 170
Query: 231 TKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQQVL 290
TKDNL +RG D + + C + ET+ HL + +W T I V +++P L
Sbjct: 171 TKDNLYKRGWRKGDKKCQL--CDREETVQHLFFDRPLARLMW---NTAICVLNLNP--AL 223
Query: 291 DHYYQFVYSSGCYNPRRSFLQLIWL---CGIWVLSNERNQRLF 330
D Q ++ ++ L+ + IW + RN+ F
Sbjct: 224 DS--QNIFGDWLEKLDKNMKDLVMVGMAAIIWAIWKSRNKACF 264
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 80.9 bits (198), Expect = 6e-14
Identities = 77/307 (25%), Positives = 125/307 (40%), Gaps = 36/307 (11%)
Query: 1 MSKGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTGSA 60
+ K GGLG+R + N+ALL K WR + DR LW +VL S+Y R GG+ +
Sbjct: 94 LPKAEGGLGIRSARPMNLALLSKVGWRLMKDRTSLWARVLRSKY-------RIGGLRDTT 146
Query: 61 W----------WREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMER 110
W WR I + + G +W +G+G + FW D W+ +
Sbjct: 147 WINTKRNASSTWRSIKSGLREVVIPGMNWV-------VGDGKDICFWDDKWL----VEDP 195
Query: 111 FRRLYDLSIHKDLSVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQ 170
R L + + D ++ L W E G W +++ + E V +R L V
Sbjct: 196 IRDLAAVELPADFQGIKIREL-WHE-GSGWD-LAKIIPYVSE-GVRLRLLSMVVDTVTGS 251
Query: 171 PDVWLWQPNIGDGYTVRGVYQMLMRQE--VHNHDVVSDAPWHKSVPLKVSICAWRLLRNR 228
D W +TV+ Y L++ E N D W + +V + W ++
Sbjct: 252 NDRTSWGATANGQFTVKSAYSFLLQSETQAQNMRQFFDRVWRVTTTERVRVFIWLVVHQV 311
Query: 229 WPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQQ 288
T ++ RR + + +C G +ETI H++ C +W R+ + +
Sbjct: 312 IMT--DVERRRRHLSASGVCQVCKGGDETILHVLRDCPSIAGIWGRLVPRGKITAFFASN 369
Query: 289 VLDHYYQ 295
+LD YQ
Sbjct: 370 ILDWVYQ 376
>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 849
Score = 80.9 bits (198), Expect = 6e-14
Identities = 70/273 (25%), Positives = 113/273 (40%), Gaps = 23/273 (8%)
Query: 3 KGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTG-SAW 61
K GGLG + N LL KW ++ ++ +L +Y G + G S +
Sbjct: 566 KDFGGLGFLDTRVMNKVLLCKWIFKLESGQKDPCCDLLRRKYMMNGGGFFQSSTEGCSQF 625
Query: 62 WREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHK 121
WR + ++++ W + LG+G T FW D W+G +F +Y +
Sbjct: 626 WRGLHEVKH--------WLKLGSCYDLGDGSATRFWDDVWLGDTPLKIKFPYIYSIVADP 677
Query: 122 DLSVGEMHALGWGEDGEAWRWRRRLLAWEEELV--VEIRNLLTNVTLQDTQPDVWLWQPN 179
+V ++ W DG WR R EELV ++ L NV L T D W+
Sbjct: 678 GKTVSQL----WSSDG--WRIDLRRSLGAEELVEWEQLLADLANVHL-STDRDRMRWKLT 730
Query: 180 IGDGYTVRGVYQMLMRQEVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRRG 239
++ + +Y+ + + D+ W +PLK+ I W +L+ R L +
Sbjct: 731 KSGQFSTKSLYREMTFGGI--RDIKMQELWKTPMPLKIKIFVWLMLKGRIQAAHQL--KK 786
Query: 240 VITNDTQLCVRGCGKNETIDHLIIHCLIFGDLW 272
+ N LC + CG E +DHL+ C LW
Sbjct: 787 MKWNGDPLC-KLCGAEEDVDHLMFKCAPARFLW 818
>gb|AAF18538.1| Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana] gi|25518314|pir||A86359 hypothetical protein
F12K8.9 - Arabidopsis thaliana
Length = 1231
Score = 80.1 bits (196), Expect = 1e-13
Identities = 97/377 (25%), Positives = 150/377 (39%), Gaps = 50/377 (13%)
Query: 1 MSKGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRL-REGGVTGS 59
+ K GGLG R + FN ALL K WR L + L+ +++ SRY L + G S
Sbjct: 694 LPKEHGGLGFRDIGLFNQALLAKQAWRLLQFPDCLFARLIKSRYFPVGEFLDSDVGSRPS 753
Query: 60 AWWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSI 119
WR I + G + KR+GNG + W D W+ R + + I
Sbjct: 754 FGWRSI--------LHGRDLLCRGLVKRVGNGKSIRVWIDYWLDDNGL--RAPWIKNPII 803
Query: 120 HKDLSVGEMHALGWGEDGEAWRWRRRLLAWEEEL----VVEIRNLLTNVTLQDTQPDVWL 175
+ DL V ++ D E WR L EE+ VV+IR V+L D W+
Sbjct: 804 NVDLLVSDL------IDYEKRDWRLDKL--EEQFFPDDVVKIRENRPVVSLD----DFWI 851
Query: 176 WQPNIGDGYTVRGVYQMLMRQEVHNHDV----------VSDAPWHKSVPLKVSICAWRLL 225
W+ N Y+V+ Y + Q + + + W K+ + W++L
Sbjct: 852 WKHNKSGDYSVKLGYWLASNQNLGQVAIEAMMQPSLNDLKTQVWKLQTEPKIKVFLWKVL 911
Query: 226 RNRWPTKDNLVRRGV-ITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSV 284
P D L RG+ + + Q C GC + E+I H++ C +W + +
Sbjct: 912 SGAIPVVDLLSYRGMKLDSRCQTC--GC-EGESIQHVLFSCSFPRQVWAMSNIHVPLLGF 968
Query: 285 DPQQVLDHYYQFVYS----SGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQL 340
+ V + Y F+ + RRSF +IW IW RN F T ++
Sbjct: 969 ECGSVYANLYHFLINRDNLKWPVELRRSFPWIIW--RIW---KNRNLFFFEGKRFTVLET 1023
Query: 341 LENVKITSLKWLKAKNV 357
+ V+ W A+ V
Sbjct: 1024 ILKVRKDVEDWFAAQVV 1040
>emb|CAD40747.2| OSJNBa0072D21.1 [Oryza sativa (japonica cultivar-group)]
gi|50923755|ref|XP_472238.1| OSJNBa0072D21.1 [Oryza
sativa (japonica cultivar-group)]
Length = 710
Score = 79.7 bits (195), Expect = 1e-13
Identities = 65/238 (27%), Positives = 113/238 (47%), Gaps = 20/238 (8%)
Query: 3 KGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTG-SAW 61
K GGLG++ L N +L KW ++ L + EG+W +L +Y ++ G S +
Sbjct: 472 KECGGLGIQNLDLQNKCMLSKWLYK-LWNEEGVWQNLLRRKYLSKKTLTHVEKKPGDSHF 530
Query: 62 WREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHK 121
W ++ ++N + G S ++ NG FW D W G F LY+L I+K
Sbjct: 531 WSGLMMVKNILLSCG--------SLKVHNGTQIRFWEDKWNGNTPFAACCPALYNLVINK 582
Query: 122 DLSVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNIG 181
+ SV A+ + +RR ++ + +E+ + + ++ L + Q D +LW+
Sbjct: 583 NESV----AVVMSKRLLKVSFRRAIVGHNLKAWLEVVSKVISIKLTE-QNDTFLWEIQKN 637
Query: 182 DGYTVRGVYQMLM-RQEVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRR 238
++V +Y+ +M R+ V D++ W +PLK+ I W L TKDNL +R
Sbjct: 638 GHFSVNSMYKAIMYREVVPKRDMI----WKLIIPLKIKIFLWYLKNGVILTKDNLAKR 691
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 79.3 bits (194), Expect = 2e-13
Identities = 88/363 (24%), Positives = 145/363 (39%), Gaps = 42/363 (11%)
Query: 6 GGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLR--EGGVTGSAWWR 63
G LG + L +FN ALL K WR L + + L ++ Y LR +GG W
Sbjct: 1195 GDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPNTTYLRANKGGHASYGW-- 1252
Query: 64 EIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHKDL 123
N I EG ++ + RLG+G T W D W+ T+ + D +D+
Sbjct: 1253 ------NSI-QEGKLLLQQGLRVRLGDGQTTKIWEDPWLPTLPPRPARGPILD----EDM 1301
Query: 124 SVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQD-TQPDVWLWQPNIGD 182
V ++ W E+ W + +E L E + L ++ L + D + W
Sbjct: 1302 KVADL----WRENKREW----DPVIFEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNT 1353
Query: 183 GYTVRGVYQMLMRQEVHNHDVVS----DAP-----WHKSVPLKVSICAWRLLRNRWPTKD 233
YTVR Y + + ++++ D P W + K+ WR L T
Sbjct: 1354 QYTVRSGYWVATHVNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRCLSGALSTTT 1413
Query: 234 NLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQQVLDHY 293
L R + + T C R C +ETI+H+I C +W R + G + L+
Sbjct: 1414 QLRNRNIPADPT--CQRCCNADETINHIIFTCSYAQVVW-RSANFSGSNRLCFTDNLEEN 1470
Query: 294 YQFVYSSGCYN---PRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQLLENVKITSLK 350
+ + G N P + L W+ +W L RN+ LF R ++ + + + +
Sbjct: 1471 IRLIL-QGKKNQNLPILNGLMPFWI--MWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATE 1527
Query: 351 WLK 353
W++
Sbjct: 1528 WVE 1530
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.141 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 718,080,565
Number of Sequences: 2540612
Number of extensions: 31480591
Number of successful extensions: 75850
Number of sequences better than 10.0: 259
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 181
Number of HSP's that attempted gapping in prelim test: 75382
Number of HSP's gapped (non-prelim): 377
length of query: 377
length of database: 863,360,394
effective HSP length: 130
effective length of query: 247
effective length of database: 533,080,834
effective search space: 131670965998
effective search space used: 131670965998
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.9 bits)
Medicago: description of AC127021.2