BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127021.10 + phase: 0 /pseudo/partial
(264 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB75932.1| putative protein [Arabidopsis thaliana] gi|11278... 106 8e-22
gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678... 103 4e-21
gb|AAP52474.1| putative polyprotein [Oryza sativa (japonica cult... 101 2e-20
gb|AAT94044.1| putative polyprotein [Oryza sativa (japonica cult... 101 2e-20
gb|AAP53121.1| putative retroelement [Oryza sativa (japonica cul... 100 7e-20
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 99 9e-20
gb|AAO73529.1| gag-pol polyprotein [Glycine max] 99 1e-19
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 99 1e-19
gb|AAP52228.1| putative retroelement [Oryza sativa (japonica cul... 99 2e-19
gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Ar... 97 3e-19
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi... 97 3e-19
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 97 5e-19
gb|AAX96502.1| Transposable element protein, putative [Oryza sat... 97 5e-19
gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza s... 97 6e-19
ref|XP_468986.1| hypothetical protein [Oryza sativa (japonica cu... 96 8e-19
emb|CAD40307.2| OSJNBb0013O03.2 [Oryza sativa (japonica cultivar... 96 8e-19
gb|AAP51904.1| putative copia-type pol polyprotein [Oryza sativa... 96 1e-18
gb|AAX92911.1| retrotransposon protein, putative, unclassified [... 96 1e-18
gb|AAO73525.1| gag-pol polyprotein [Glycine max] 94 5e-18
gb|AAP53187.1| putative retroelement [Oryza sativa (japonica cul... 93 7e-18
>emb|CAB75932.1| putative protein [Arabidopsis thaliana] gi|11278365|pir||T47841
hypothetical protein T2O9.150 - Arabidopsis thaliana
Length = 1339
Score = 106 bits (264), Expect = 8e-22
Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 11/221 (4%)
Query: 13 PKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKL 72
P+F+G + +W M +F+ ELW ++E+G+ + + + +R A ++
Sbjct: 13 PRFDG---YYDFWSMTMENFLRS--RELWRLVEEGIPAIVVGTTPVSEAQR---SAVEEA 64
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
K K++ + +I R + DKST+KA++ S+ ++GS KVK A+ L ++EL
Sbjct: 65 KLKDLKVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFEL 124
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
MK+ E I+ R T+V+ ++ + S VSKILRSL ++ V +IEE+ DL
Sbjct: 125 LAMKEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDL 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIA---LPSKGK 230
+TLS+++L SL VHE LN H +++ + PS+G+
Sbjct: 185 STLSIDELHGSLLVHEQRLNGHVQEEQALKVTHEERPSQGR 225
>gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678|pir||T06419
gag-proteinase polyprotein - soybean retrovirus-like
element
Length = 640
Score = 103 bits (258), Expect = 4e-21
Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 18/242 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWD-ILEDGVDDLDLDEEGAAID----RRIHTPAQKKL 72
D + +WK M +F+ LD W +++D LD EG D T + +L
Sbjct: 17 DGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDEL 76
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 136
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 137 LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 252
L V++L+ SL+ E+ L++ T KKSK++A S E EE+ D D+
Sbjct: 197 CNLRVDELIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGEEDEYDLDT 243
Query: 253 DE 254
DE
Sbjct: 244 DE 245
>gb|AAP52474.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531770|ref|NP_920187.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18657016|gb|AAL78103.1| Putative polyprotein [Oryza
sativa]
Length = 669
Score = 101 bits (251), Expect = 2e-20
Identities = 69/240 (28%), Positives = 123/240 (50%), Gaps = 23/240 (9%)
Query: 9 SGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPA 68
S K FNG +FS W + M S+IM D ++W + I I+T A
Sbjct: 8 STKPHVFNGT--DFSHWCSRMQSYIMAEDYDIWRKVSHAY----------VIPEVINTAA 55
Query: 69 QKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVH 128
+K ++++ K R I+++ I R++Y ++ TA ++ +L +G+ +KE + +
Sbjct: 56 EKTAFEQNCKARNILLSGISRSDYDRVPHLETAHEIWNALKNFHQGTNNIKELRRDLFKK 115
Query: 129 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKV 183
+Y F MK E++++ SRF ++S L+ + SY V+ S+I R S W V
Sbjct: 116 EYIKFEMKYREALDDYLSRFNKILSDLRSVDSSYDVNYPQSEISRHFLNGLDMSIWEMNV 175
Query: 184 TAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASES 243
T+I+E+ +++TL+++ L + LK HEM++ + KS ++ +S SS AS S
Sbjct: 176 TSIQESVNMSTLTLDSLYTKLKTHEMNIRSRKVDSKSSALV------SSSSSLVVDASSS 229
>gb|AAT94044.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50878403|gb|AAT85178.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1398
Score = 101 bits (251), Expect = 2e-20
Identities = 67/245 (27%), Positives = 128/245 (51%), Gaps = 17/245 (6%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +FS W + M S+IM D ++W + I I+T A+K ++++
Sbjct: 15 DGTDFSHWYSRMQSYIMAEDYDIWRKVSHPY----------VIPETINTAAEKTAFEQNC 64
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K R I+++ I R +Y +++ TA ++ +L +G+ +KE + + +Y F MK
Sbjct: 65 KARNILLSGISRLDYNRVAHLQTAHEIWTALSNFHQGTNNIKELRRDLFKKEYIKFEMKP 124
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKI----LRSLP-SRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY + S+I L L S W KVT+I+E+ ++
Sbjct: 125 REALDDYLSRFNKILSDLRSVDSSYDANYPQSEISHHFLNGLDMSIWEIKVTSIQESVNM 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSI--ALPSKGKTSKSSKAYKASESEEESPDG 250
+TL+++ L + LK HEM++ + KS ++ +L +SKSS + + ++ +
Sbjct: 185 STLTLDSLYTKLKTHEMNVLSRKVDSKSSALVSSLDVDASSSKSSFLAIFNATSDDQLEQ 244
Query: 251 DSDED 255
+ED
Sbjct: 245 IEEED 249
>gb|AAP53121.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533064|ref|NP_920834.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|15451594|gb|AAK98718.1| Putative retroelement [Oryza
sativa]
Length = 1660
Score = 99.8 bits (247), Expect = 7e-20
Identities = 58/211 (27%), Positives = 112/211 (52%), Gaps = 15/211 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +FS W + M S+IM D ++W + I I+T A+K ++++
Sbjct: 159 DGTDFSHWCSRMQSYIMAEDYDIWRKVSHSY----------VIPEAINTAAEKTAFEQNC 208
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K I+++ I R++Y +++ TA ++ +L +G+ +KE + + +Y F MK
Sbjct: 209 KSHNILLSGISRSDYDRVAHLQTAHEIWTALSNFHQGTNNIKELRRDLFKKEYIKFEMKP 268
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY + S+I R S W KVT+I+E+ ++
Sbjct: 269 GEALDDYLSRFNKILSDLRSIDSSYDTNYPQSEISRHFLNGLDMSIWEMKVTSIQESVNM 328
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSI 223
+TL+++ L + LK HEM++ + KS ++
Sbjct: 329 STLTLDSLYTKLKTHEMNVLSRKVDSKSSAL 359
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 99.4 bits (246), Expect = 9e-20
Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 18/242 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 72
D + +WK M +F+ LD W + G + LD EG D T + +L
Sbjct: 17 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 76
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFEN 136
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 137 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 252
+ V++L+ SL+ E+ L++ KKSK++A S E EE+ D D+
Sbjct: 197 CNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLDT 243
Query: 253 DE 254
DE
Sbjct: 244 DE 245
>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
Length = 1577
Score = 99.0 bits (245), Expect = 1e-19
Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 18/242 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 72
D + +WK M +F+ LD W + G + LD EG + T + +L
Sbjct: 17 DGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDEL 76
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 136
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 137 LKMKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 252
+ V++L+ SL+ E+ L++ T KKSK++A S E EE+ D D+
Sbjct: 197 CNMRVDELIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGEEDEYDLDT 243
Query: 253 DE 254
DE
Sbjct: 244 DE 245
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 99.0 bits (245), Expect = 1e-19
Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 18/242 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 72
D + +WK M +F+ LD W + G + LD EG D T + +L
Sbjct: 17 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 76
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
+ K + + + + ++ + AK L + EG+ KVK ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKMSRLQLLATKFEN 136
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 137 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 252
+ V++L+ SL+ E+ L++ KKSK++A S E EE+ D D+
Sbjct: 197 CNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLDT 243
Query: 253 DE 254
DE
Sbjct: 244 DE 245
>gb|AAP52228.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531278|ref|NP_919941.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655787|gb|AAN04204.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22655727|gb|AAN04144.1| Putative retroelement [Oryza
sativa]
Length = 742
Score = 98.6 bits (244), Expect = 2e-19
Identities = 70/264 (26%), Positives = 133/264 (49%), Gaps = 32/264 (12%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +F +W + M S+IM D ++W + + I +I+T A K ++ +
Sbjct: 13 DGTDFPYWCSKMQSYIMAKDLDIWKKVSNPY----------VIPDQINTAALKTEFENNC 62
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K I+++ I R+++ ++S TA + +L +G+ +KE + +Y F MK
Sbjct: 63 KAHNILLSGISRSDFDRVSHLQTANEISIALRNFHQGTTNIKELHRDLFKKEYIKFEMKH 122
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY ++ SK+ R S W KVT+I+E+ D+
Sbjct: 123 GEALDDYLSRFNKILSDLRSVDSSYDINYTQSKVSRHFLNGLDMSIWEMKVTSIQESVDM 182
Query: 193 NTLSVEDLVSSLKVHEMSL-----------NEHETSKKSKSIALPSKGKTSKS-----SK 236
+TL+++ L + LK HEM++ N+ E +K++K + KT ++ K
Sbjct: 183 STLTLDSLYTKLKTHEMNILSPLNKGKKKDNDGEKTKENKPKSTFKGEKTKENLKKMFEK 242
Query: 237 AYKASESEEESPDGDSDEDQSCKD 260
Y A E + DG+S+++ K+
Sbjct: 243 VYAAFE-PLSNIDGESEDEDKGKN 265
>gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Arabidopsis
thaliana] gi|25301683|pir||E86451 probable copia-type
polyprotein, 28768-32772 [imported] - Arabidopsis
thaliana
Length = 1334
Score = 97.4 bits (241), Expect = 3e-19
Identities = 62/207 (29%), Positives = 108/207 (51%), Gaps = 9/207 (4%)
Query: 13 PKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKL 72
PKF+GD E ++ N+ +E WDI+E G+ E + T +K
Sbjct: 10 PKFDGDYEHWAMLMENLIR-----SKEWWDIIETGIPR---PERNVILTGAQRTELAEKT 61
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
K H K++ + ASI +T + K T+K ++ S+ ++G+ +V+ A+ L +E+
Sbjct: 62 VKDH-KVKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEV 120
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
MK E+I +SR + + ++ L + S V KILR+L ++ V AIEE+ ++
Sbjct: 121 LEMKIGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNI 180
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKK 219
L+V+ L SSL VHE +L+ H+ ++
Sbjct: 181 KELTVDGLQSSLMVHEQNLSRHDVEER 207
>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
thaliana]
Length = 1334
Score = 97.4 bits (241), Expect = 3e-19
Identities = 62/207 (29%), Positives = 108/207 (51%), Gaps = 9/207 (4%)
Query: 13 PKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKL 72
PKF+GD E ++ N+ +E WDI+E G+ E + T +K
Sbjct: 10 PKFDGDYEHWAMLMENLIR-----SKEWWDIIETGIPR---PERNVILTGAQRTELAEKT 61
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
K H K++ + ASI +T + K T+K ++ S+ ++G+ +V+ A+ L +E+
Sbjct: 62 VKDH-KVKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEV 120
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
MK E+I +SR + + ++ L + S V KILR+L ++ V AIEE+ ++
Sbjct: 121 LEMKIGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNI 180
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKK 219
L+V+ L SSL VHE +L+ H+ ++
Sbjct: 181 KELTVDGLQSSLMVHEQNLSRHDVEER 207
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 97.1 bits (240), Expect = 5e-19
Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 18/242 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 72
D + +WK M +F+ LD W + G + LD EG D T + +L
Sbjct: 17 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 76
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKISRLQLLATKFEN 136
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 137 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 252
+ V++L+ SL+ E+ L++ KKSK++A S E EE+ D ++
Sbjct: 197 CNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLNT 243
Query: 253 DE 254
DE
Sbjct: 244 DE 245
>gb|AAX96502.1| Transposable element protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 655
Score = 97.1 bits (240), Expect = 5e-19
Identities = 63/228 (27%), Positives = 117/228 (50%), Gaps = 20/228 (8%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +FS W + M S+IM D ++W + I I+T A K ++++
Sbjct: 13 DGTDFSHWCSRMQSYIMAKDYDIWRKVSHPY----------VIPEEINTTALKLEFEQNC 62
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K R I+++ I R++Y +++ A ++ +L +G+ +KE + + +Y F MK
Sbjct: 63 KARNILLSGISRSDYDRVAHLQAAHEIWIALSNFHQGTYNIKELRRGLFKKEYIKFEMKP 122
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY + S+I R S W KVT+I+E+ ++
Sbjct: 123 GEALDDYLSRFNKILSDLRSVDSSYDANYPQSEISRHFLNGLDMSIWEMKVTSIQESVNM 182
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKG-----KTSKSS 235
+TL+++ L + LK HEM++ + KS ++ S +SKSS
Sbjct: 183 STLTLDSLYTKLKTHEMNVLSRKVDSKSSALVSSSSSLDVDTSSSKSS 230
>gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza sativa]
Length = 1074
Score = 96.7 bits (239), Expect = 6e-19
Identities = 74/255 (29%), Positives = 121/255 (47%), Gaps = 14/255 (5%)
Query: 2 TADKKTDSGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAID 61
T+ T SGKAP FNG +++ WK M + ++ +W I+E G ++ D
Sbjct: 26 TSYVSTYSGKAPYFNGT--DYAAWKHKMKMHLKSINPSIWRIVEKGYVLQKPEDPTKEDD 83
Query: 62 RRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEA 121
H AQ +I++++ +E+ ++ D +AK ++ +L EG+ V+E+
Sbjct: 84 ENEHKNAQAA---------NVILSALSGSEFNRVDDIESAKVIWDTLRNLHEGTDSVRES 134
Query: 122 KALMLVHQYELFRMKDDESIEEMYSRFQTLVSGLQIL-KKSYVVSDHVSKILRSLPSRWR 180
K +L Q+E F M D ES +MY +V+ ++ L K V K++R++ R
Sbjct: 135 KVEILKGQFERFVMLDGESPSDMYDHLSKIVNEIKGLGSKDMTDEVVVKKMVRAITLRNS 194
Query: 181 PKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKA 240
VT I E D TL+ DL+ + H+M + E+ + + I S K A KA
Sbjct: 195 TLVTIIRERPDYKTLTPHDLLGRILAHDMLV--QESKEVIQYINQSSTTSIKKEDLALKA 252
Query: 241 SESEEESPDGDSDED 255
E EEES S E+
Sbjct: 253 KEEEEESRKSKSKEE 267
>ref|XP_468986.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|41469483|gb|AAS07268.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 446
Score = 96.3 bits (238), Expect = 8e-19
Identities = 65/242 (26%), Positives = 120/242 (48%), Gaps = 20/242 (8%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +FS W + M S+IM + ++W + I I+T A K ++ +
Sbjct: 15 DGTDFSHWCSRMQSYIMAENYDIWRKVSHPY----------VIPEVINTAAAKTEFELNC 64
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K R I+++ IPR++Y +++ TA ++ +L +G+ +KE + + +Y F MK
Sbjct: 65 KARNILLSGIPRSDYDRVAHLQTAHEIWIALSNFHQGTNNIKELRRDLFKKEYIKFEMKP 124
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY + S+I R S W KVT+I+E+ ++
Sbjct: 125 GEALDDYLSRFNKILSDLRSVDSSYDANYPQSEISRHFLNGLDMSIWEMKVTSIQESVNM 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 252
TL+++ L + LK HEM++ + K K + A AS +ES D +
Sbjct: 185 TTLTLDSLYTKLKTHEMNILSRTDEDEDK-----GKQVVDLAFIARNASSDVDESDDDNE 239
Query: 253 DE 254
++
Sbjct: 240 EK 241
>emb|CAD40307.2| OSJNBb0013O03.2 [Oryza sativa (japonica cultivar-group)]
Length = 1028
Score = 96.3 bits (238), Expect = 8e-19
Identities = 64/248 (25%), Positives = 125/248 (49%), Gaps = 20/248 (8%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +FS W + M S+IM D ++W + I I+T +K ++++
Sbjct: 15 DGTDFSHWCSRMQSYIMAEDYDIWRKVSHPY----------VIPEAINTTTEKTAFEQNC 64
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K R I+++ I R++Y +++ TA ++ +L + + +KE + + +Y F MK
Sbjct: 65 KARNILLSGISRSDYDRVAHLQTAHEIWTTLSNFHQETNNIKELRRDLFKKEYIKFEMKP 124
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY + S+I R S W KVT+I+E+ ++
Sbjct: 125 GEALDDYLSRFNKILSDLRSVDSSYYANYPQSEISRHFLNSLDMSIWEMKVTSIQESVNM 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSI-----ALPSKGKTSKSSKAYKASESEEES 247
+TL ++ L + LK HEM++ + KS ++ +L +SKSS + + ++
Sbjct: 185 STLILDSLHTKLKTHEMNVLSRKVDYKSSALVSSSSSLDVDASSSKSSFLSVFNATSDDQ 244
Query: 248 PDGDSDED 255
+ +ED
Sbjct: 245 LEQIEEED 252
>gb|AAP51904.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530630|ref|NP_919617.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042887|gb|AAM08715.1| Putative
copia-type pol polyprotein [Oryza sativa]
gi|16924049|gb|AAL31661.1| Putative copia-type pol
polyprotein [Oryza sativa]
Length = 998
Score = 95.9 bits (237), Expect = 1e-18
Identities = 66/248 (26%), Positives = 128/248 (51%), Gaps = 20/248 (8%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +FS W + M S+IM D ++W + I I+T A K ++++
Sbjct: 15 DGTDFSHWCSRMQSYIMAEDYDIWRKVSHPY----------VIPEVINTAAAKTKFEQNC 64
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K R I+++ I R++Y +++ TA ++ +L +G+ +KE + + +Y F +K
Sbjct: 65 KARNILLSGISRSDYDRVAHFQTAHEIWNALSNFHQGTNNIKELRRAIFKKEYIKFEIKP 124
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKI----LRSLP-SRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY + S+I L L S W KVT+I+E+ ++
Sbjct: 125 GEALDDYLSRFNKILSDLRSVDFSYYANYPQSEISHHFLNGLDMSIWEIKVTSIQESVNM 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSI-----ALPSKGKTSKSSKAYKASESEEES 247
+TL+++ L + LK HEM++ + KS ++ +L +SKSS + + ++
Sbjct: 185 STLTLDSLYTKLKTHEMNVLSRKVDSKSSALVSSSSSLDVDASSSKSSFLAIFNATSDDQ 244
Query: 248 PDGDSDED 255
+ +ED
Sbjct: 245 LEQIEEED 252
>gb|AAX92911.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1323
Score = 95.9 bits (237), Expect = 1e-18
Identities = 64/232 (27%), Positives = 117/232 (49%), Gaps = 21/232 (9%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +F W + M S+IM D ++W + I I+T A+K +++
Sbjct: 15 DGTDFFHWCSRMQSYIMAEDYDIWRKVSHPY----------VIPEAINTAAEKTAFEQIC 64
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K R I+++ I R+ Y +++ TA ++ +L +G+ +KE + +Y F MK
Sbjct: 65 KARNILLSGISRSGYDRVAHLQTAHEIWVALSNFHQGTNNIKELHRDLFKTEYIKFEMKP 124
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY + S+I R S W KVT+I+E+ ++
Sbjct: 125 GEALDDYLSRFNKILSDLRFVDSSYDANYPESEISRHFLNGLDMSIWEMKVTSIQESVNM 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESE 244
+TL+++ L + LK HEM++ + KS ++ +S SS AS S+
Sbjct: 185 STLTLDSLYTKLKTHEMNVLSRKADSKSSALV------SSSSSLDVDASSSK 230
>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 93.6 bits (231), Expect = 5e-18
Identities = 69/243 (28%), Positives = 115/243 (46%), Gaps = 19/243 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 72
D + +WK M +F+ LD W + G + LD EG + T + +L
Sbjct: 17 DGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDEL 76
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAK-AMFASLCANFEGSKKVKEAKALMLVHQYE 131
+ K + + + + ++ + AK A L EG+ KVK ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDACGEILKTTHEGTSKVKMSRLQLLATKFE 136
Query: 132 LFRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKD 191
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D
Sbjct: 137 NLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQD 196
Query: 192 LNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGD 251
+ + V++L+ SL+ E+ L++ KKSK++A S E EE+ D D
Sbjct: 197 ICNMRVDELIGSLQTFELGLSD-RNEKKSKNLAFVSN------------DEGEEDEYDLD 243
Query: 252 SDE 254
+DE
Sbjct: 244 TDE 246
>gb|AAP53187.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533196|ref|NP_920900.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21672057|gb|AAM74419.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1499
Score = 93.2 bits (230), Expect = 7e-18
Identities = 65/231 (28%), Positives = 117/231 (50%), Gaps = 17/231 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +FS W + M S+IM D ++W + I I+T A+K ++++
Sbjct: 15 DGTDFSHWCSRMQSYIMAEDYDIWRKVSHPY----------VIPEAINTAAEKTAFEQNC 64
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K R I+++ I R++Y +++ TA ++ L +G+ +KE + + +Y F MK
Sbjct: 65 KARNILLSGISRSDYDRVTHFRTAHEIWNVLSNFHQGTNNIKELRRDIFKKEYIKFEMKP 124
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKVTAIEEAKDL 192
E++ + SRF ++S L+ + SY + S+I R S W KVT+I+++ ++
Sbjct: 125 GEALNDYLSRFIKILSYLRSVDFSYDTNYPQSEISRHFLNGLDMSIWEMKVTSIQKSVNM 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASES 243
+TL+++ L LK HEM++ + SKS AL S S A+ + S
Sbjct: 185 STLTLDSLYRKLKTHEMNVLSRKVD--SKSSALVSSSSYSLDVDAFSSKPS 233
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.310 0.127 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,888,956
Number of Sequences: 2540612
Number of extensions: 17185895
Number of successful extensions: 83507
Number of sequences better than 10.0: 524
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 284
Number of HSP's that attempted gapping in prelim test: 82618
Number of HSP's gapped (non-prelim): 858
length of query: 264
length of database: 863,360,394
effective HSP length: 126
effective length of query: 138
effective length of database: 543,243,282
effective search space: 74967572916
effective search space used: 74967572916
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 74 (33.1 bits)
Medicago: description of AC127021.10