BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127020.7 + phase: 0 /pseudo
(1459 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG51754.1| reverse transcriptase, putative; 100033-105622 [A... 81 3e-13
emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar... 81 3e-13
emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultiva... 81 3e-13
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 80 4e-13
dbj|BAB01217.1| Ta11 non-LTR retroelement protein-like [Arabidop... 80 4e-13
pir||S65811 finger protein (clone DW15) - Arabidopsis thaliana r... 80 4e-13
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 78 2e-12
gb|AAD17396.1| putative Ta11-like non-LTR retroelement protein [... 77 4e-12
gb|AAO89211.1| hypothetical protein [Arabidopsis thaliana] 77 6e-12
gb|AAT69167.1| hypothetical protein At2g17920 [Arabidopsis thali... 77 6e-12
gb|AAD03566.1| putative Ta11-like non-LTR retroelement protein [... 77 6e-12
gb|AAC13575.1| similar to Arabidopsis thaliana retrotransposon T... 75 1e-11
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 75 2e-11
gb|AAX92969.1| Transposable element protein, putative [Oryza sat... 75 2e-11
dbj|BAA97081.1| Ta11 non-LTR retroelement protein-like [Arabidop... 74 4e-11
ref|NP_189728.1| hypothetical protein [Arabidopsis thaliana] 74 4e-11
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 74 5e-11
gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cul... 74 5e-11
gb|AAY82797.1| hypothetical protein At2g41590 [Arabidopsis thali... 73 6e-11
gb|AAB84341.1| putative Ta11-like non-LTR retroelement protein [... 73 6e-11
>gb|AAG51754.1| reverse transcriptase, putative; 100033-105622 [Arabidopsis
thaliana] gi|25403084|pir||G86419 probable reverse
transcriptase, 100033-105622 [imported] - Arabidopsis
thaliana
Length = 1557
Score = 80.9 bits (198), Expect = 3e-13
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 4/192 (2%)
Query: 39 CLIGGVLADREIQFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPW 98
CLIG VL + M R W+ +V +R+ F F K D VL +G
Sbjct: 38 CLIGRVLNPSCQPMKHLIRNMPRKWQKEGKVKGVALSDERFQFIFDSKHDLEDVLAKGVH 97
Query: 99 LYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDV 158
++ + I++DR + L + WVQ+ +P + K +G +G +K
Sbjct: 98 SFNEWSIIVDRWYEHPPDDY--LRFMPLWVQIWNIPVNYYTEKAITKLGDLIGEVKEVVF 155
Query: 159 RNTIHSS--YMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTD 216
+H + ++R+KV DV+ PL++ + +G TV F YE++ C+ C L H
Sbjct: 156 NPDLHQAQKFVRVKVLFDVSRPLRRSKVINFKHGESATVKFHYERIQKRCYECQRLTHEK 215
Query: 217 KVCPELFELDSD 228
+CP L + D
Sbjct: 216 DMCPLLIKARQD 227
>emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar-group)]
gi|50923489|ref|XP_472105.1| OSJNBa0081G05.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1711
Score = 80.9 bits (198), Expect = 3e-13
Identities = 51/183 (27%), Positives = 88/183 (47%), Gaps = 6/183 (3%)
Query: 51 QFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRI 110
Q A F E M RAW+ ++ + ++ F + D VL+ GPWL+ +++
Sbjct: 182 QVALF-EDMRRAWRLRAEMSYKSLKDNLFIVSFSAEGDHKFVLQGGPWLHRGDALLVADF 240
Query: 111 APSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVR--NTIHSSYMR 168
P++VPL + WV+++ LP + + G GS LG ++ DV+ + R
Sbjct: 241 NGLVSPSMVPLETMPIWVRIYDLPLVMMNKERGVIYGSKLGKVREVDVQEDGCNKHDFFR 300
Query: 169 IKVAIDVTVPLKKEWRVRASNGNFVTV---NFKYEKLGVFCHRCGVLGHTDKVCPELFEL 225
I+V + V PLK+ ++ + N +YE++ FC CG +GH+DK C +
Sbjct: 301 IRVDLPVNRPLKRMLAIKIKVKGAEEIRRFNLRYERIPHFCFFCGFIGHSDKECEKRLAN 360
Query: 226 DSD 228
+ D
Sbjct: 361 EED 363
>emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultivar-group)]
Length = 1285
Score = 80.9 bits (198), Expect = 3e-13
Identities = 51/183 (27%), Positives = 88/183 (47%), Gaps = 6/183 (3%)
Query: 51 QFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRI 110
Q A F E M RAW+ ++ + ++ F + D VL+ GPWL+ +++
Sbjct: 182 QVALF-EDMRRAWRLRAEMSYKSLKDNLFIVSFSAEGDHKFVLQGGPWLHRGDALLVADF 240
Query: 111 APSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVR--NTIHSSYMR 168
P++VPL + WV+++ LP + + G GS LG ++ DV+ + R
Sbjct: 241 NGLVSPSMVPLETMPIWVRIYDLPLVMMNKERGVIYGSKLGKVREVDVQEDGCNKHDFFR 300
Query: 169 IKVAIDVTVPLKKEWRVRASNGNFVTV---NFKYEKLGVFCHRCGVLGHTDKVCPELFEL 225
I+V + V PLK+ ++ + N +YE++ FC CG +GH+DK C +
Sbjct: 301 IRVDLPVNRPLKRMLAIKIKVKGAEEIRRFNLRYERIPHFCFFCGFIGHSDKECEKRLAN 360
Query: 226 DSD 228
+ D
Sbjct: 361 EED 363
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 80.5 bits (197), Expect = 4e-13
Identities = 57/220 (25%), Positives = 108/220 (48%), Gaps = 9/220 (4%)
Query: 15 LTLSDEGLTLNLEAEPETAADLDHCLIGGVLADREIQFAYFSERMSRAWKPGKRVTITKS 74
L + DE + L E + A L+ + R+ +M R W G +
Sbjct: 14 LGIDDEPVALTSEFCSQAAYVNRFSLVVTTVNPRKQNLRALIGQMPRVW--GFPDSCVGR 71
Query: 75 VADRYLFQFHHKVDDAR--VLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHG 132
+ D+ QF + ++A VL GPW ++++ + + R P+ + + I FWVQ+ G
Sbjct: 72 IIDKGRVQFKFQSEEAMNLVLRRGPWSFNDWMLSIHRWYPNL--SEAEMKIIPFWVQITG 129
Query: 133 LPFGFVQPKVGQGIGSFLGTLKAYDV-RNTIHSSYMRIKVAIDVTVPLKKEWRVRASNGN 191
+P F+ + + +G+ LG + D N+ H+ ++R+++ ++ PL+ + + ++G
Sbjct: 130 IPLLFLTNAMARCVGNRLGHVADVDFDENSNHTGFVRVRINWNLDDPLRFQRNFQFADGE 189
Query: 192 FVTVNFKYEKLGVFCHRCGVLGHTDKVCPELFELDSDDGV 231
+ F++E+L FC +CG L H KVC F D++D V
Sbjct: 190 NTVIKFRFERLRNFCTKCGSLKHDIKVCTLSF--DNEDPV 227
>dbj|BAB01217.1| Ta11 non-LTR retroelement protein-like [Arabidopsis thaliana]
gi|67633664|gb|AAY78756.1| putative zinc finger protein
[Arabidopsis thaliana] gi|15230157|ref|NP_189111.1| zinc
finger protein, putative [Arabidopsis thaliana]
Length = 487
Score = 80.5 bits (197), Expect = 4e-13
Identities = 55/192 (28%), Positives = 89/192 (45%), Gaps = 6/192 (3%)
Query: 40 LIGGVLADREIQFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWL 99
LIG VL + + R W+ RVT ++R+ F F K D VL +G
Sbjct: 39 LIGRVLNPSCQPMKHLIRNIPRKWQKEGRVTGISLTSERFQFIFDSKHDLEDVLAKGVHT 98
Query: 100 YDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAY--- 156
Y+++ IV+DR + + L + WVQ+ +P + K +G +G +K
Sbjct: 99 YNDWSIVVDRWYENPPDDY--LRFMLVWVQIWNIPVNYYTEKAITKLGDLIGEVKEVVFN 156
Query: 157 DVRNTIHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTD 216
V +H ++R+ V DV+ PL++ + NG+ TV F YE++ C+ C L H
Sbjct: 157 PVEPQLHE-FVRVNVLFDVSRPLRRSKVINFKNGDTATVRFHYERIQKRCYECQRLTHEK 215
Query: 217 KVCPELFELDSD 228
+CP L + D
Sbjct: 216 DLCPILIKERQD 227
>pir||S65811 finger protein (clone DW15) - Arabidopsis thaliana retrotransposon
Ta11-1 gi|976277|gb|AAA75253.1| zinc finger protein
Length = 487
Score = 80.5 bits (197), Expect = 4e-13
Identities = 55/192 (28%), Positives = 89/192 (45%), Gaps = 6/192 (3%)
Query: 40 LIGGVLADREIQFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWL 99
LIG VL + + R W+ RVT ++R+ F F K D VL +G
Sbjct: 39 LIGRVLNPSCQPMKHLIRNIPRKWQKEGRVTGISLTSERFQFIFDSKHDLEDVLPKGVHT 98
Query: 100 YDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAY--- 156
Y+++ IV+DR + + L + WVQ+ +P + K +G +G +K
Sbjct: 99 YNDWSIVVDRWYENPPDDY--LRFMLVWVQIWNIPVNYYTEKAITKLGDLIGEVKEVVFN 156
Query: 157 DVRNTIHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTD 216
V +H ++R+ V DV+ PL++ + NG+ TV F YE++ C+ C L H
Sbjct: 157 PVEPQLHE-FVRVNVLFDVSRPLRRSKVINFKNGDTATVRFHYERIQKRCYECQRLTHEK 215
Query: 217 KVCPELFELDSD 228
+CP L + D
Sbjct: 216 DLCPILIKERQD 227
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 78.2 bits (191), Expect = 2e-12
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 12/199 (6%)
Query: 39 CLIGGVLADREIQFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDA--RVLEEG 96
CL+G L R + R W G + + FQF +++ VL G
Sbjct: 38 CLLGRPLMPRNQNLRQILTTVPRTW--GLVGFVRGRIIQNRRFQFIFPSEESLDTVLRRG 95
Query: 97 PWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKA- 155
PW + + +V++R P P + LN I FW+QV +P F+ +V I LG KA
Sbjct: 96 PWSFADRMLVVERWTPDMDP--LVLNFIPFWIQVREIPLQFLNLEVIDNIAGSLGERKAV 153
Query: 156 -YDVRNTIHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGH 214
+D T ++RI++ DV PL+ + + S G ++F YE+L FC CG + H
Sbjct: 154 DFDPFTTTRVEFVRIQIKWDVNHPLRFQRNYQFSLGVNTVLSFYYERLRGFCDVCGRMTH 213
Query: 215 TDKVC----PELFELDSDD 229
C L + D DD
Sbjct: 214 DAGSCVLQNGALHDSDGDD 232
>gb|AAD17396.1| putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana] gi|25411641|pir||A84530 probable Ta11-like
non-LTR retroelement protein [imported] - Arabidopsis
thaliana gi|15226543|ref|NP_179154.1| zinc finger
protein, putative [Arabidopsis thaliana]
Length = 483
Score = 77.0 bits (188), Expect = 4e-12
Identities = 54/191 (28%), Positives = 86/191 (44%), Gaps = 4/191 (2%)
Query: 40 LIGGVLADREIQFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWL 99
LIG VL M R W+ +V +R+ F F + D VL +G
Sbjct: 35 LIGRVLNPACQPMKNLLRNMPRKWQKEGKVKGIALNNERFQFIFDSEHDLEEVLAKGVHT 94
Query: 100 YDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVR 159
++++ IV+DR + + L ++ WVQ+ +P + K +G +G +K
Sbjct: 95 FNDWSIVVDRWYENPPDDY--LRYMLLWVQIWNIPVNYNTAKAITKLGDLIGEVKEVVFN 152
Query: 160 NTIHS--SYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDK 217
+ ++R+KV DV+ PL++ V NG TVNF YE++ C+ C L H
Sbjct: 153 PELKQIREFVRVKVLFDVSRPLRRSKVVNFRNGGSATVNFHYERIQKRCYECQRLTHEKD 212
Query: 218 VCPELFELDSD 228
VCP L + D
Sbjct: 213 VCPILVKARQD 223
>gb|AAO89211.1| hypothetical protein [Arabidopsis thaliana]
Length = 307
Score = 76.6 bits (187), Expect = 6e-12
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Query: 59 MSRAWKPGKRVTITKSVADRYL-FQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPN 117
+ RAW V + + D Y+ F F ++D V PWL++N+ + R P+ N
Sbjct: 58 LPRAWGLTAHVH-GRIIDDTYVQFLFQSEMDLLSVQRREPWLFNNWFVASQRWQPAPALN 116
Query: 118 LVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRNTIHS--SYMRIKVAIDV 175
V I+ WVQ+ G+PF +V + I +G + + D +T + +Y+R++V + +
Sbjct: 117 FVTT--IDLWVQMRGIPFLYVSEETALEIAQEIGAIISLDFHDTTSTQIAYIRVRVRVGI 174
Query: 176 TVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVCP 220
T L+ R+ +G + F+YE+L C C H CP
Sbjct: 175 TDSLRFFQRITFESGESALIRFQYERLRRICSNCFRFTHNRNYCP 219
>gb|AAT69167.1| hypothetical protein At2g17920 [Arabidopsis thaliana]
gi|42569117|ref|NP_179382.2| expressed protein
[Arabidopsis thaliana]
Length = 307
Score = 76.6 bits (187), Expect = 6e-12
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Query: 59 MSRAWKPGKRVTITKSVADRYL-FQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPN 117
+ RAW V + + D Y+ F F ++D V PWL++N+ + R P+ N
Sbjct: 58 LPRAWGLTAHVH-GRIIDDTYVQFLFQSEMDLLSVQRREPWLFNNWFVASQRWQPAPALN 116
Query: 118 LVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRNTIHS--SYMRIKVAIDV 175
V I+ WVQ+ G+PF +V + I +G + + D +T + +Y+R++V + +
Sbjct: 117 FVTT--IDLWVQMRGIPFLYVSEETALEIAQEIGAIISLDFHDTTSTQIAYIRVRVRVGI 174
Query: 176 TVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVCP 220
T L+ R+ +G + F+YE+L C C H CP
Sbjct: 175 TDSLRFFQRITFESGESALIRFQYERLRRICSNCFRFTHNRNYCP 219
>gb|AAD03566.1| putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana] gi|7459594|pir||T00832 probable Ta11-like
non-LTR retroelement protein [imported] - Arabidopsis
thaliana
Length = 336
Score = 76.6 bits (187), Expect = 6e-12
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Query: 59 MSRAWKPGKRVTITKSVADRYL-FQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPN 117
+ RAW V + + D Y+ F F ++D V PWL++N+ + R P+ N
Sbjct: 58 LPRAWGLTAHVH-GRIIDDTYVQFLFQSEMDLLSVQRREPWLFNNWFVASQRWQPAPALN 116
Query: 118 LVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRNTIHS--SYMRIKVAIDV 175
V I+ WVQ+ G+PF +V + I +G + + D +T + +Y+R++V + +
Sbjct: 117 FVTT--IDLWVQMRGIPFLYVSEETALEIAQEIGAIISLDFHDTTSTQIAYIRVRVRVGI 174
Query: 176 TVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVCP 220
T L+ R+ +G + F+YE+L C C H CP
Sbjct: 175 TDSLRFFQRITFESGESALIRFQYERLRRICSNCFRFTHNRNYCP 219
>gb|AAC13575.1| similar to Arabidopsis thaliana retrotransposon Ta11-1 (GB:(L47193)
gi|7486623|pir||T01159 hypothetical protein F7N22.17 -
Arabidopsis thaliana
Length = 416
Score = 75.5 bits (184), Expect = 1e-11
Identities = 46/170 (27%), Positives = 87/170 (51%), Gaps = 7/170 (4%)
Query: 58 RMSRAWKPGKRVTITKSVADRYLFQFHHKVDDAR--VLEEGPWLYDNFHIVLDRIAPSAV 115
+MSR W G + + +R QF + ++A VL GPW ++++ + + R P+
Sbjct: 78 QMSRVW--GFPDSCVGRILERGRVQFKFQTEEAMNLVLRRGPWSFNDWMLSIHRWYPNI- 134
Query: 116 PNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDV-RNTIHSSYMRIKVAID 174
+ L I FWVQ+ G+P F+ + + +G+ LG + D N+ H ++R+K+ +
Sbjct: 135 -SETELKIIPFWVQITGIPLLFLTNAMARCVGNRLGIVSTVDFDENSNHVGFVRVKIDWN 193
Query: 175 VTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVCPELFE 224
+ PL+ + + + + +++E+L FC +CG L H K C F+
Sbjct: 194 LDDPLRFQRNFQFAVDENTVIKYRFERLRNFCSKCGSLKHDVKECVLAFD 243
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 75.1 bits (183), Expect = 2e-11
Identities = 41/161 (25%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 62 AWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPL 121
+++ ++V+ + +LF FH R LE+GPW+++ +V+ + + + +
Sbjct: 28 SFRVNRKVSCKDLGENHFLFTFHQASGKRRALEDGPWMFNKDLVVMIDLDETKLIEDMIF 87
Query: 122 NHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRN--TIHSSYMRIKVAIDVTVPL 179
+ WV+ LP G + + G IG +G D+ + ++RIK+ ID+ PL
Sbjct: 88 AFVPIWVRAMKLPLGLMTKETGMAIGREVGEFMTMDLEEDGSAVGQFLRIKIRIDIRKPL 147
Query: 180 KKEWRVRA-SNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVC 219
+ + ++ + YE L FC+ CG++GHT+K+C
Sbjct: 148 MRGVTLFVGADERPLWCPLVYEFLPDFCYICGIVGHTEKLC 188
>gb|AAX92969.1| Transposable element protein, putative [Oryza sativa (japonica
cultivar-group)] gi|62733928|gb|AAX96037.1| Transposable
element protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 647
Score = 75.1 bits (183), Expect = 2e-11
Identities = 49/168 (29%), Positives = 84/168 (49%), Gaps = 5/168 (2%)
Query: 57 ERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVP 116
E M RAW+ ++ + ++ F + D +L+ GPW++ +++ P
Sbjct: 283 EDMRRAWRLRADMSFKSLRDNLFIITFSAEGDYNFMLQGGPWIHRGDALLVAEFDGLTCP 342
Query: 117 NLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRNTIHSSY--MRIKVAID 174
+ + LN + WV+++ LP + G+ GS L ++ DV + Y RI+V +
Sbjct: 343 SKILLNSVPIWVRIYDLPLVLMIQARGKLYGSKLSNVREVDVVTDGLNKYDFFRIRVDLP 402
Query: 175 VTVPLKKEWRVR-ASNGNFVTVNF--KYEKLGVFCHRCGVLGHTDKVC 219
V PLK + ++ A G VT +F +YE++ FC CG LGH+DK C
Sbjct: 403 VNHPLKAKIAIKVAVQGKEVTRSFDLRYERVPHFCFICGFLGHSDKEC 450
>dbj|BAA97081.1| Ta11 non-LTR retroelement protein-like [Arabidopsis thaliana]
Length = 241
Score = 73.9 bits (180), Expect = 4e-11
Identities = 49/166 (29%), Positives = 82/166 (48%), Gaps = 12/166 (7%)
Query: 59 MSRAWKPGKRVTITKSVADRYLFQFHHKVDDA--RVLEEGPWLYDNFHIVLDRIAPSAVP 116
M R W G+ + + + F F ++++ VL GPW ++++ I+L R P
Sbjct: 58 MPRIW--GQSGLVHGRIMEGRQFHFIFTLEESLETVLRRGPWAFNDWMILLQRWEPQ--- 112
Query: 117 NLVPL-NHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTL--KAYDVRNTIHSSYMRIKVAI 173
+PL I FWVQ+ G+PF F+ V + IG LG + ++V + R+ +
Sbjct: 113 --IPLFPFIPFWVQIRGIPFQFLNRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLLHW 170
Query: 174 DVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVC 219
D+T PL+ + + + G + F+YE+L FC CG+L H C
Sbjct: 171 DITHPLRFQRHFQFTAGVNTLLRFRYERLRGFCEVCGMLTHDFGAC 216
>ref|NP_189728.1| hypothetical protein [Arabidopsis thaliana]
Length = 336
Score = 73.9 bits (180), Expect = 4e-11
Identities = 49/166 (29%), Positives = 82/166 (48%), Gaps = 12/166 (7%)
Query: 59 MSRAWKPGKRVTITKSVADRYLFQFHHKVDDA--RVLEEGPWLYDNFHIVLDRIAPSAVP 116
M R W G+ + + + F F ++++ VL GPW ++++ I+L R P
Sbjct: 153 MPRIW--GQSGLVHGRIMEGRQFHFIFTLEESLETVLRRGPWAFNDWMILLQRWEPQ--- 207
Query: 117 NLVPL-NHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTL--KAYDVRNTIHSSYMRIKVAI 173
+PL I FWVQ+ G+PF F+ V + IG LG + ++V + R+ +
Sbjct: 208 --IPLFPFIPFWVQIRGIPFQFLNRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLLHW 265
Query: 174 DVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVC 219
D+T PL+ + + + G + F+YE+L FC CG+L H C
Sbjct: 266 DITHPLRFQRHFQFTAGVNTLLRFRYERLRGFCEVCGMLTHDFGAC 311
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1694
Score = 73.6 bits (179), Expect = 5e-11
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 7/219 (3%)
Query: 7 PTKLNLDGLTLSDEGLTL-NLEAEPETAADLDHCLIGGVLADREIQFAYFSERMSRAWKP 65
PT L DE + + N+E + A L L Q A F + M RAW+
Sbjct: 240 PTVFTEGDLVEDDEDVVVVNIEDDELQTAGLWTILARFYSLRTPNQVALFDD-MRRAWRL 298
Query: 66 GKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIE 125
++ + ++ F + D V++ GPW++ +++ P+ VPL+ +
Sbjct: 299 RADISYKSLRDNMFIITFSAEGDYDFVIKGGPWIHRGDALLVASFDGITCPSNVPLDVVP 358
Query: 126 FWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRNTIHS--SYMRIKVAIDVTVPLKKEW 183
WV+++ LP + G+ GS LG ++ DV + + + I+V + V PLK +
Sbjct: 359 IWVRIYDLPLVLMTKVRGEMFGSKLGKVREVDVGDDGRNKHDFFHIRVDLPVKRPLKSQI 418
Query: 184 RVRAS-NGNFVTVNF--KYEKLGVFCHRCGVLGHTDKVC 219
+R + G V F YE++ FC CG +GH+D+ C
Sbjct: 419 AIRMTVQGKEVLRRFDLHYERVPHFCFICGFIGHSDRDC 457
>gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1888
Score = 73.6 bits (179), Expect = 5e-11
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 7/219 (3%)
Query: 7 PTKLNLDGLTLSDEGLTL-NLEAEPETAADLDHCLIGGVLADREIQFAYFSERMSRAWKP 65
PT L DE + + N+E + A L L Q A F + M RAW+
Sbjct: 214 PTVFTEGDLVEDDEDVVVVNIEDDELQTAGLWTILARFYSLRTPNQVALFDD-MRRAWRL 272
Query: 66 GKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIE 125
++ + ++ F + D V++ GPW++ +++ P+ VPL+ +
Sbjct: 273 RADISYKSLRDNMFIITFSAEGDYDFVIKGGPWIHRGDALLVASFDGITCPSNVPLDVVP 332
Query: 126 FWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRNTIHS--SYMRIKVAIDVTVPLKKEW 183
WV+++ LP + G+ GS LG ++ DV + + + I+V + V PLK +
Sbjct: 333 IWVRIYDLPLVLMTKVRGEMFGSKLGKVREVDVGDDGRNKHDFFHIRVDLPVKRPLKSQI 392
Query: 184 RVRAS-NGNFVTVNF--KYEKLGVFCHRCGVLGHTDKVC 219
+R + G V F YE++ FC CG +GH+D+ C
Sbjct: 393 AIRMTVQGKEVLRRFDLHYERVPHFCFICGFIGHSDRDC 431
>gb|AAY82797.1| hypothetical protein At2g41590 [Arabidopsis thaliana]
Length = 338
Score = 73.2 bits (178), Expect = 6e-11
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
Query: 81 FQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQP 140
F F +++D V + PWL++N+ + R + N V I+ WVQ+ G+P +V
Sbjct: 51 FLFQNEIDLMMVQRKEPWLFNNWFVAATRWEVAPAHNFVTT--IDLWVQIRGIPLPYVSE 108
Query: 141 KVGQGIGSFLGTLKAYDVRNT--IHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFK 198
+ I LG + D +T I +Y+R++V +T L+ R+ +G T+ F+
Sbjct: 109 ETVMEIAQDLGEVLMLDYHDTTSIQIAYIRVRVRFGITDRLRFFQRIVFDSGETATIRFQ 168
Query: 199 YEKLGVFCHRCGVLGHTDKVCP 220
YE+L C C H CP
Sbjct: 169 YERLRRICSSCFRFTHNRAYCP 190
>gb|AAB84341.1| putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana] gi|15227393|ref|NP_181690.1| expressed protein
[Arabidopsis thaliana] gi|7487594|pir||T00815 probable
Ta11-like non-LTR retroelement protein [imported] -
Arabidopsis thaliana
Length = 367
Score = 73.2 bits (178), Expect = 6e-11
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
Query: 81 FQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQP 140
F F +++D V + PWL++N+ + R + N V I+ WVQ+ G+P +V
Sbjct: 80 FLFQNEIDLMMVQRKEPWLFNNWFVAATRWEVAPAHNFVTT--IDLWVQIRGIPLPYVSE 137
Query: 141 KVGQGIGSFLGTLKAYDVRNT--IHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFK 198
+ I LG + D +T I +Y+R++V +T L+ R+ +G T+ F+
Sbjct: 138 ETVMEIAQDLGEVLMLDYHDTTSIQIAYIRVRVRFGITDRLRFFQRIVFDSGETATIRFQ 197
Query: 199 YEKLGVFCHRCGVLGHTDKVCP 220
YE+L C C H CP
Sbjct: 198 YERLRRICSSCFRFTHNRAYCP 219
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.351 0.158 0.526
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,079,564,476
Number of Sequences: 2540612
Number of extensions: 79996161
Number of successful extensions: 310517
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 310344
Number of HSP's gapped (non-prelim): 111
length of query: 1459
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1318
effective length of database: 505,134,102
effective search space: 665766746436
effective search space used: 665766746436
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 82 (36.2 bits)
Medicago: description of AC127020.7