BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127019.10 + phase: 0
(113 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA31965.1| unnamed protein product [Medicago sativa] gi|196... 136 1e-31
emb|CAA97411.1| Hypothetical protein B0035.10 [Caenorhabditis el... 135 3e-31
gb|AAX92719.1| histone H3 - maize [Oryza sativa (japonica cultiv... 135 3e-31
pir||S56707 histone H3 homolog - common tobacco 135 3e-31
gb|AAX92952.1| histone H3 - maize [Oryza sativa (japonica cultiv... 135 3e-31
sp|P08898|H3_CAEEL Histone H3 134 4e-31
gb|AAA32655.1| histone H3 (H3-1.1) 134 4e-31
pir||HSPM3 histone H3 - garden pea (tentative sequence) gi|82610... 134 5e-31
gb|AAV65112.1| histone 3 [Camellia sinensis] 134 7e-31
emb|CAE60211.1| Hypothetical protein CBG03775 [Caenorhabditis br... 134 7e-31
gb|AAN46713.1| histone 3 [Baculini sp. WS22] gi|27923473|gb|AAN4... 133 9e-31
emb|CAB02546.1| histone H3 [Homo sapiens] gi|18202621|sp|Q93081|... 133 1e-30
gb|AAH67493.1| H3 histone family, member F [Homo sapiens] 133 1e-30
sp|P08903|H3_ENCAL Histone H3 gi|70751|pir||HSEAH3 histone H3 - ... 133 1e-30
pdb|1F66|E Chain E, 2.6 A Crystal Structure Of A Nucleosome Core... 133 1e-30
ref|NP_001013074.1| histone 1, H2ai (predicted) [Rattus norvegic... 132 2e-30
ref|XP_545420.1| PREDICTED: similar to HIST1H3I protein [Canis f... 132 2e-30
ref|XP_545397.1| PREDICTED: similar to histone 1, H3g [Canis fam... 132 2e-30
ref|XP_527285.1| PREDICTED: similar to HIST1H3I protein [Pan tro... 132 2e-30
ref|XP_527254.1| PREDICTED: similar to HIST2H3C protein [Pan tro... 132 2e-30
>emb|CAA31965.1| unnamed protein product [Medicago sativa] gi|19607|emb|CAA31964.1|
unnamed protein product [Medicago sativa]
gi|21797|emb|CAA25451.1| unnamed protein product
[Triticum aestivum] gi|55977044|sp|P68429|H31_MEDSA
Histone H3.1 (Major histone H3)
gi|2565419|gb|AAB81995.1| histone H3 [Onobrychis
viciifolia] gi|488565|gb|AAB49545.1| histone H3.1
gi|82609|pir||A26014 histone H3 - wheat
gi|55977045|sp|P68430|H3_ONOVI Histone H3
gi|55977043|sp|P68428|H3_WHEAT Histone H3
gi|55977041|sp|P68427|H3_PEA Histone H3
Length = 136
Score = 136 bits (342), Expect = 1e-31
Identities = 78/116 (67%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAVSA+QE EA V LFEDTN+CAIHAK
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAK 116
>emb|CAA97411.1| Hypothetical protein B0035.10 [Caenorhabditis elegans]
gi|3881585|emb|CAB05834.1| C. elegans HIS-25 protein
(corresponding sequence ZK131.2) [Caenorhabditis
elegans] gi|3881584|emb|CAB05833.1| C. elegans HIS-9
protein (corresponding sequence ZK131.3) [Caenorhabditis
elegans] gi|3881582|emb|CAB05831.1| C. elegans HIS-13
protein (corresponding sequence ZK131.7) [Caenorhabditis
elegans] gi|3879732|emb|CAB07653.1| Hypothetical protein
T10C6.13 [Caenorhabditis elegans]
gi|3877574|emb|CAB05209.1| Hypothetical protein F54E12.1
[Caenorhabditis elegans] gi|3875619|emb|CAB04057.1|
Hypothetical protein F08G2.3 [Caenorhabditis elegans]
gi|3876195|emb|CAA92733.1| Hypothetical protein F22B3.2
[Caenorhabditis elegans] gi|6752|emb|CAA33644.1| Histone
protein [Caenorhabditis elegans]
gi|9755513|gb|AAF98226.1| Histone protein 17
[Caenorhabditis elegans] gi|9755518|gb|AAF98231.1|
Histone protein 27 [Caenorhabditis elegans]
gi|2935373|gb|AAC05102.1| Histone protein 32
[Caenorhabditis elegans] gi|1458312|gb|AAC48033.1|
Histone protein 6 [Caenorhabditis elegans]
gi|1326373|gb|AAB00650.1| Histone protein 59
[Caenorhabditis elegans] gi|15145318|gb|AAK84514.1|
Histone protein 49 [Caenorhabditis elegans]
gi|2144744|pir||HSKW3 histone H3 - Caenorhabditis
elegans gi|17562010|ref|NP_505292.1| histone (his-27)
[Caenorhabditis elegans] gi|17561998|ref|NP_505297.1|
histone (his-17) [Caenorhabditis elegans]
gi|17534753|ref|NP_496890.1| histone (his-13)
[Caenorhabditis elegans] gi|17561992|ref|NP_505199.1|
histone (his-6) [Caenorhabditis elegans]
gi|17540652|ref|NP_501204.1| histone (his-59)
[Caenorhabditis elegans] gi|17540628|ref|NP_502138.1|
predicted CDS, histone (his-55) [Caenorhabditis elegans]
gi|17539966|ref|NP_502153.1| histone (his-63)
[Caenorhabditis elegans] gi|17532993|ref|NP_496899.1|
histone (his-42) [Caenorhabditis elegans]
gi|17559288|ref|NP_505276.1| predicted CDS, histone
(his-49) [Caenorhabditis elegans]
gi|17538228|ref|NP_502134.1| predicted CDS, histone
(his-45) [Caenorhabditis elegans]
gi|17564214|ref|NP_507033.1| histone (his-2)
[Caenorhabditis elegans] gi|17541088|ref|NP_501407.1|
histone (his-32) [Caenorhabditis elegans]
gi|17537813|ref|NP_496895.1| predicted CDS, histone
(his-25) [Caenorhabditis elegans]
gi|17534745|ref|NP_496894.1| histone (15.3 kD) (his-9)
[Caenorhabditis elegans] gi|12276045|gb|AAG50235.1|
histone H3 [Caenorhabditis elegans]
Length = 136
Score = 135 bits (339), Expect = 3e-31
Identities = 77/116 (66%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A+G VKKPH + GTVALREIR YQ+ST
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
+ A FKT LRFQSSAV A+QE EA V LFEDTN+CAIHAK
Sbjct: 61 LLIRRAPFQRLVREIAQDFKTDLRFQSSAVMALQEAAEAYLVGLFEDTNLCAIHAK 116
>gb|AAX92719.1| histone H3 - maize [Oryza sativa (japonica cultivar-group)]
gi|34898300|ref|NP_910496.1| histone H3 [Oryza sativa
(japonica cultivar-group)] gi|34898312|ref|NP_910502.1|
histone H3 [Oryza sativa (japonica cultivar-group)]
gi|34898310|ref|NP_910501.1| histone H3 [Oryza sativa
(japonica cultivar-group)] gi|1531754|emb|CAA57811.1|
Histone H3 [Asparagus officinalis]
gi|20253|emb|CAA31970.1| unnamed protein product [Oryza
sativa] gi|20251|emb|CAA31969.1| unnamed protein product
[Oryza sativa] gi|50931575|ref|XP_475315.1| putative
histone H3 [Oryza sativa (japonica cultivar-group)]
gi|50924191|ref|XP_472456.1| OSJNBb0108J11.17 [Oryza
sativa (japonica cultivar-group)]
gi|34908584|ref|NP_915639.1| putative histone H3 [Oryza
sativa (japonica cultivar-group)]
gi|32488365|emb|CAE02924.1| OSJNBb0108J11.17 [Oryza
sativa (japonica cultivar-group)]
gi|7671464|emb|CAB89404.1| histone H3-like protein
[Arabidopsis thaliana] gi|7671463|emb|CAB89403.1|
histone H3-like protein [Arabidopsis thaliana]
gi|29824185|gb|AAP04053.1| putative histone H3
[Arabidopsis thaliana] gi|22324934|gb|AAM95675.1|
histone H3 [Orobanche cumana] gi|21536571|gb|AAM60903.1|
histone H3-like protein [Arabidopsis thaliana]
gi|7939509|dbj|BAA95712.1| histone H3-like protein
[Arabidopsis thaliana] gi|9759616|dbj|BAB11558.1|
histone H3 [Arabidopsis thaliana]
gi|26449416|dbj|BAC41835.1| putative histone H3
[Arabidopsis thaliana] gi|28973783|gb|AAO64207.1|
putative histone H3 [Arabidopsis thaliana]
gi|27808628|gb|AAO24594.1| At1g09200 [Arabidopsis
thaliana] gi|27764990|gb|AAO23616.1| At5g10400
[Arabidopsis thaliana] gi|19548061|gb|AAL87394.1|
AT5g65360/MNA5_9 [Arabidopsis thaliana]
gi|18655353|gb|AAL76132.1| AT3g27360/K1G2_6 [Arabidopsis
thaliana] gi|7595794|gb|AAF64452.1| histone H3
[Euphorbia esula] gi|18390992|ref|NP_563838.1| histone
H3 [Arabidopsis thaliana] gi|15238433|ref|NP_201339.1|
histone H3 [Arabidopsis thaliana]
gi|18416264|ref|NP_568228.1| histone H3 [Arabidopsis
thaliana] gi|18416261|ref|NP_568227.1| histone H3
[Arabidopsis thaliana] gi|21644654|dbj|BAC01212.1|
histone H3 [Oryza sativa (japonica cultivar-group)]
gi|27529854|dbj|BAC53942.1| H3 histone [Nicotiana
tabacum] gi|14532560|gb|AAK64008.1| AT5g65360/MNA5_9
[Arabidopsis thaliana] gi|14335142|gb|AAK59851.1|
AT3g27360/K1G2_6 [Arabidopsis thaliana]
gi|46981297|gb|AAT07615.1| putative histone H3 [Oryza
sativa (japonica cultivar-group)]
gi|13926211|gb|AAK49583.1| histone H3 [Arabidopsis
thaliana] gi|59799581|sp|P69247|H31_ORYSA Histone H3
gi|59799553|sp|P69248|H3_PETCR Histone H3
gi|59799552|sp|P69246|H3_MAIZE Histone H3
gi|62286642|sp|Q71T45|H3_EUPES Histone H3
gi|27805477|sp|P59226|H3_ARATH Histone H3
gi|3249101|gb|AAC24084.1| Match to histone H3 gene
gb|M17131 and gb|M35387 from A. thaliana. ESTs
gb|H76511 gb|H76255, gb|AA712452, gb|N65260 and
gb|T42306 come from this gene. [Arabidopsis thaliana]
gi|15232146|ref|NP_189372.1| histone H3 [Arabidopsis
thaliana] gi|52076001|dbj|BAD46454.1| histone H3 [Oryza
sativa (japonica cultivar-group)]
gi|52076000|dbj|BAD46453.1| histone H3 [Oryza sativa
(japonica cultivar-group)] gi|52075995|dbj|BAD46448.1|
histone H3 [Oryza sativa (japonica cultivar-group)]
gi|5295940|dbj|BAA81841.1| histone H3 [Oryza sativa
(japonica cultivar-group)] gi|5295939|dbj|BAA81840.1|
histone H3 [Oryza sativa (japonica cultivar-group)]
gi|1314779|gb|AAB67837.1| histone H3 homolog [Brassica
napus] gi|886738|emb|CAA59111.1| histone 3 [Zea mays]
gi|1667592|gb|AAB18816.1| histone 3 [Oryza sativa]
gi|1040764|gb|AAA79889.1| histone H3
gi|168506|gb|AAA66265.1| histone H3
gi|169659|gb|AAA33854.1| histone H3
gi|169657|gb|AAA33853.1| histone H3
gi|169655|gb|AAA33852.1| histone H3
gi|168497|gb|AAA33473.1| histone H3
gi|168495|gb|AAA33472.1| histone H3
gi|168493|gb|AAA33471.1| histone H3 (H3C3)
gi|387567|gb|AAA32809.1| histone H3
gi|387565|gb|AAA32808.1| histone H3
gi|225839|prf||1314298B histone H3
gi|225459|prf||1303352A histone H3
Length = 136
Score = 135 bits (339), Expect = 3e-31
Identities = 77/116 (66%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAV+A+QE EA V LFEDTN+CAIHAK
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAK 116
>pir||S56707 histone H3 homolog - common tobacco
Length = 136
Score = 135 bits (339), Expect = 3e-31
Identities = 77/116 (66%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAV+A+QE EA V LFEDTN+CAIHAK
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAK 116
>gb|AAX92952.1| histone H3 - maize [Oryza sativa (japonica cultivar-group)]
Length = 168
Score = 135 bits (339), Expect = 3e-31
Identities = 77/116 (66%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAV+A+QE EA V LFEDTN+CAIHAK
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAK 116
>sp|P08898|H3_CAEEL Histone H3
Length = 136
Score = 134 bits (338), Expect = 4e-31
Identities = 77/116 (66%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A+G VKKPH + GTVALREIR YQ+ST
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
+ A FKT LRFQSSAV A+QE EA V LFEDTN+CAIHAK
Sbjct: 61 LLIRRAPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAK 116
>gb|AAA32655.1| histone H3 (H3-1.1)
Length = 136
Score = 134 bits (338), Expect = 4e-31
Identities = 77/116 (66%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSS VSA+QE EA V LFEDTN+CAIHAK
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSVVSALQEAAEAYLVGLFEDTNLCAIHAK 116
>pir||HSPM3 histone H3 - garden pea (tentative sequence) gi|82610|pir||S00373
histone H3 - wheat
Length = 135
Score = 134 bits (337), Expect = 5e-31
Identities = 77/115 (66%), Positives = 83/115 (71%), Gaps = 3/115 (2%)
Query: 2 AGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS- 59
A TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTEL 60
Query: 60 -NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAVSA+QE EA V LFEDTN+CAIHAK
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAK 115
>gb|AAV65112.1| histone 3 [Camellia sinensis]
Length = 136
Score = 134 bits (336), Expect = 7e-31
Identities = 76/116 (65%), Positives = 84/116 (71%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAV+A+QE E+ V LFEDTN+CAIHAK
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAESYLVGLFEDTNLCAIHAK 116
>emb|CAE60211.1| Hypothetical protein CBG03775 [Caenorhabditis briggsae]
gi|39593749|emb|CAE62042.1| Hypothetical protein
CBG06058 [Caenorhabditis briggsae]
gi|39593746|emb|CAE62039.1| Hypothetical protein
CBG06055 [Caenorhabditis briggsae]
gi|39593603|emb|CAE61895.1| Hypothetical protein
CBG05886 [Caenorhabditis briggsae]
gi|39593568|emb|CAE61860.1| Hypothetical protein
CBG05838 [Caenorhabditis briggsae]
Length = 136
Score = 134 bits (336), Expect = 7e-31
Identities = 77/116 (66%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA AAG VKKPH + GTVALREIR YQ+ST
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPAAGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAV A+QE EA V LFEDTN+CAIHAK
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQESAEAYLVGLFEDTNLCAIHAK 116
>gb|AAN46713.1| histone 3 [Baculini sp. WS22] gi|27923473|gb|AAN46712.1| histone 3
[Gratidia fritzchei] gi|27923451|gb|AAN46701.1| histone
3 [Oreophoetes peruana]
Length = 118
Score = 133 bits (335), Expect = 9e-31
Identities = 76/115 (66%), Positives = 83/115 (72%), Gaps = 3/115 (2%)
Query: 2 AGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS- 59
AGTKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH + GTVALREIR YQ+ST
Sbjct: 1 AGTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 60 -NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAV A+QE EA V LFEDTN+CAIHAK
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 115
>emb|CAB02546.1| histone H3 [Homo sapiens] gi|18202621|sp|Q93081|H3B_HUMAN Histone
H3/b
Length = 136
Score = 133 bits (334), Expect = 1e-30
Identities = 76/116 (65%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH + GTVALREIR YQ+ST
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAV A+QE EA V LFEDTN+CAIHAK
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEATLVGLFEDTNLCAIHAK 116
>gb|AAH67493.1| H3 histone family, member F [Homo sapiens]
Length = 136
Score = 133 bits (334), Expect = 1e-30
Identities = 77/116 (66%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH + GTVALREIR YQ+ST
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 NKEASVSETC--EGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
+ C FKT LRFQSSAV A+QE EA V LFEDTN+CAIHAK
Sbjct: 61 LLIRKLPFQCLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAK 116
>sp|P08903|H3_ENCAL Histone H3 gi|70751|pir||HSEAH3 histone H3 - Altenstein's bread
tree gi|224865|prf||1202289A histone H3
Length = 135
Score = 133 bits (334), Expect = 1e-30
Identities = 76/115 (66%), Positives = 83/115 (72%), Gaps = 3/115 (2%)
Query: 2 AGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS- 59
A TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRRYQKSTEL 60
Query: 60 -NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAV+A+QE EA V LFEDTN+CAIHAK
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAK 115
>pdb|1F66|E Chain E, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
gi|11513397|pdb|1F66|A Chain A, 2.6 A Crystal Structure
Of A Nucleosome Core Particle Containing The Variant
Histone H2a.Z
Length = 136
Score = 133 bits (334), Expect = 1e-30
Identities = 76/116 (65%), Positives = 84/116 (71%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH + GTVALREIR YQ+ST
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGEVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAV A+QE EA V+LFEDTN+CAIHAK
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAK 116
>ref|NP_001013074.1| histone 1, H2ai (predicted) [Rattus norvegicus]
gi|32880233|ref|NP_038578.2| histone 1, H3a [Mus
musculus] gi|30061345|ref|NP_835514.1| histone 1, H3i
[Mus musculus] gi|30061343|ref|NP_835513.1| histone 1,
H3h [Mus musculus] gi|21489955|ref|NP_659539.1| histone
1, H3g [Mus musculus] gi|18857859|emb|CAD24076.1|
histone 1, H3j [Homo sapiens] gi|3080464|emb|CAB11424.1|
histone 1, H3i [Homo sapiens]
gi|57110493|ref|XP_545429.1| PREDICTED: similar to
histone 1, H3g [Canis familiaris]
gi|57110491|ref|XP_545428.1| PREDICTED: similar to
histone 1, H3g [Canis familiaris]
gi|57110437|ref|XP_545399.1| PREDICTED: similar to
histone 1, H3g [Canis familiaris]
gi|57110411|ref|XP_545385.1| PREDICTED: similar to
histone 1, H3g [Canis familiaris]
gi|10198618|emb|CAC03421.1| HIST1H3G [Homo sapiens]
gi|10198614|emb|CAC03416.1| HIST1H3F [Homo sapiens]
gi|10198612|emb|CAC03413.1| histone 1, H3e [Homo
sapiens] gi|10198611|emb|CAC03412.1| histone 1, H3d
[Homo sapiens] gi|3219592|emb|CAA15670.1| histone 1, H3h
[Homo sapiens] gi|22901762|gb|AAN10060.1| histone H3
[Homo sapiens] gi|22901760|gb|AAN10059.1| histone H3
[Homo sapiens] gi|22901758|gb|AAN10058.1| histone H3
[Homo sapiens] gi|22901756|gb|AAN10057.1| histone H3
[Homo sapiens] gi|22901754|gb|AAN10056.1| histone H3
[Homo sapiens] gi|22901752|gb|AAN10055.1| histone H3
[Homo sapiens] gi|22901750|gb|AAN10054.1| histone H3
[Homo sapiens] gi|22901748|gb|AAN10053.1| histone H3
[Homo sapiens] gi|22901746|gb|AAN10052.1| histone H3
[Homo sapiens] gi|22901744|gb|AAN10051.1| histone H3
[Homo sapiens] gi|2292937|emb|CAA72968.1| Histone H3
[Mus musculus] gi|516241|emb|CAA56571.1| histone H3.1
protein [Mus pahari] gi|515008|emb|CAA56572.1| histone
3.1 protein [Mus pahari] gi|55627898|ref|XP_527604.1|
PREDICTED: similar to histone 1, H3g [Pan troglodytes]
gi|55627890|ref|XP_518888.1| PREDICTED: similar to
histone 1, H3g [Pan troglodytes]
gi|55626272|ref|XP_527286.1| PREDICTED: similar to
histone 1, H3g [Pan troglodytes]
gi|55626054|ref|XP_527264.1| PREDICTED: similar to
histone 1, H3g [Pan troglodytes]
gi|55626036|ref|XP_527253.1| PREDICTED: similar to
histone 1, H3g [Pan troglodytes]
gi|56205276|emb|CAI24887.1| OTTMUSP00000000537 [Mus
musculus] gi|56205269|emb|CAI24113.1| RP23-138F20.14
[Mus musculus] gi|56205262|emb|CAI24105.1| RP23-138F20.6
[Mus musculus] gi|56237856|emb|CAI25837.1| RP23-480B19.7
[Mus musculus] gi|61849172|ref|XP_595303.1| PREDICTED:
similar to histone 1, H3g [Bos taurus]
gi|61835899|ref|XP_591827.1| PREDICTED: similar to
histone 1, H3g [Bos taurus] gi|15082553|gb|AAH12185.1|
H3 histone family, member H [Homo sapiens]
gi|51261313|gb|AAH79835.1| H3 histone family, member H
[Homo sapiens] gi|47481371|gb|AAH69303.1| H3 histone
family, member A [Homo sapiens]
gi|46575763|gb|AAH69133.1| H3 histone family, member L
[Homo sapiens] gi|45768502|gb|AAH67490.1| H3 histone
family, member A [Homo sapiens]
gi|45767728|gb|AAH67492.1| H3 histone family, member I
[Homo sapiens] gi|45767724|gb|AAH67491.1| H3 histone
family, member A [Homo sapiens]
gi|64654173|gb|AAH96134.1| H3 histone family, member L
[Homo sapiens] gi|64654168|gb|AAH96132.1| H3 histone
family, member L [Homo sapiens]
gi|64654162|gb|AAH96129.1| H3 histone family, member K
[Homo sapiens] gi|64653409|gb|AAH96131.1| H3 histone
family, member I [Homo sapiens]
gi|64653057|gb|AAH96133.1| H3 histone family, member L
[Homo sapiens] gi|64653053|gb|AAH96130.1| H3 histone
family, member K [Homo sapiens]
gi|64653048|gb|AAH96128.1| H3 histone family, member K
[Homo sapiens] gi|27372728|gb|AAO06262.1| histone
protein Hist1h3a [Mus musculus]
gi|27372716|gb|AAO06256.1| histone protein Hist1h3g [Mus
musculus] gi|27372714|gb|AAO06255.1| histone protein
Hist1h3i [Mus musculus] gi|27372712|gb|AAO06254.1|
histone protein Hist1h3h [Mus musculus]
gi|47480900|gb|AAH69818.1| H3 histone family, member I
[Homo sapiens] gi|42542799|gb|AAH66246.1| H3 histone
family, member A [Homo sapiens]
gi|42542797|gb|AAH66245.1| H3 histone family, member A
[Homo sapiens] gi|42542576|gb|AAH66247.1| H3 histone
family, member A [Homo sapiens]
gi|31418313|gb|AAH52981.1| H3 histone family, member D
[Homo sapiens] gi|21411168|gb|AAH31333.1| H3 histone
family, member B [Homo sapiens]
gi|21619975|gb|AAH33095.1| H3 histone family, member B
[Homo sapiens] gi|1749800|emb|CAB06032.1| histone H3
[Homo sapiens] gi|1749796|emb|CAB06030.1| histone H3
[Homo sapiens] gi|13960157|gb|AAH07518.1| H3 histone
family, member K [Homo sapiens]
gi|4504289|ref|NP_003524.1| H3 histone family, member F
[Homo sapiens] gi|4504293|ref|NP_003526.1| H3 histone
family, member J [Homo sapiens]
gi|4504287|ref|NP_003523.1| H3 histone family, member D
[Homo sapiens] gi|4504285|ref|NP_003522.1| H3 histone
family, member C [Homo sapiens]
gi|4504281|ref|NP_003520.1| H3 histone family, member A
[Homo sapiens] gi|4504291|ref|NP_003525.1| H3 histone
family, member H [Homo sapiens]
gi|4504297|ref|NP_003528.1| H3 histone family, member L
[Homo sapiens] gi|4504295|ref|NP_003527.1| H3 histone
family, member K [Homo sapiens]
gi|10440560|ref|NP_066298.1| H3 histone family, member I
[Homo sapiens] gi|21071021|ref|NP_003521.2| H3 histone
family, member B [Homo sapiens]
gi|1458136|gb|AAB04765.1| histone H3.1-D [Mus musculus]
gi|1458132|gb|AAB04763.1| histone H3.1-I [Mus musculus]
gi|55977057|sp|P68433|H31_MOUSE Histone H3.1
gi|55977055|sp|P68431|H31_HUMAN Histone H3.1 (H3/a)
(H3/c) (H3/d) (H3/f) (H3/h) (H3/i) (H3/j) (H3/k) (H3/l)
gi|51327|emb|CAA34512.1| unnamed protein product [Mus
musculus] gi|51317|emb|CAA25839.1| unnamed protein
product [Mus musculus] gi|559902|emb|CAA86403.1| histone
H3a [Homo sapiens] gi|32115|emb|CAA24952.1| unnamed
protein product [Homo sapiens]
gi|1894787|emb|CAA58540.1| histone H3 [Homo sapiens]
gi|31982|emb|CAA40407.1| histone H3 [Homo sapiens]
gi|1568563|emb|CAB02548.1| histone H3 [Homo sapiens]
gi|1568561|emb|CAB02547.1| histone H3 [Homo sapiens]
gi|2119009|pir||I57019 H3 histone - rat
gi|2119010|pir||I49398 histone H3.1 protein - shrew
mouse gi|184070|gb|AAA63185.1| histone H3.1
gi|49456981|emb|CAG46811.1| HIST1H3E [Homo sapiens]
gi|49456975|emb|CAG46808.1| HIST1H3F [Homo sapiens]
gi|49456919|emb|CAG46780.1| HIST1H3F [Homo sapiens]
gi|49456671|emb|CAG46656.1| HIST1H3A [Homo sapiens]
gi|12858930|dbj|BAB31493.1| unnamed protein product [Mus
musculus] gi|55977056|sp|P68432|H31_BOVIN Histone H3.1
gi|387198|gb|AAA37813.1| histone H3
gi|387196|gb|AAA37811.1| histone H3
gi|12839978|dbj|BAB24722.1| unnamed protein product [Mus
musculus] gi|310133|gb|AAA19824.1| H3 histone
Length = 136
Score = 132 bits (333), Expect = 2e-30
Identities = 76/116 (65%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH + GTVALREIR YQ+ST
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAV A+QE EA V LFEDTN+CAIHAK
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAK 116
>ref|XP_545420.1| PREDICTED: similar to HIST1H3I protein [Canis familiaris]
Length = 179
Score = 132 bits (333), Expect = 2e-30
Identities = 76/116 (65%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH + GTVALREIR YQ+ST
Sbjct: 44 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 103
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAV A+QE EA V LFEDTN+CAIHAK
Sbjct: 104 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAK 159
>ref|XP_545397.1| PREDICTED: similar to histone 1, H3g [Canis familiaris]
Length = 160
Score = 132 bits (333), Expect = 2e-30
Identities = 76/116 (65%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH + GTVALREIR YQ+ST
Sbjct: 25 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 84
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAV A+QE EA V LFEDTN+CAIHAK
Sbjct: 85 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAK 140
>ref|XP_527285.1| PREDICTED: similar to HIST1H3I protein [Pan troglodytes]
Length = 265
Score = 132 bits (333), Expect = 2e-30
Identities = 76/116 (65%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH + GTVALREIR YQ+ST
Sbjct: 130 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 189
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAV A+QE EA V LFEDTN+CAIHAK
Sbjct: 190 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAK 245
>ref|XP_527254.1| PREDICTED: similar to HIST2H3C protein [Pan troglodytes]
Length = 546
Score = 132 bits (333), Expect = 2e-30
Identities = 76/116 (65%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH + GTVALREIR YQ+ST
Sbjct: 279 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 338
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAV A+QE EA V LFEDTN+CAIHAK
Sbjct: 339 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAK 394
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.125 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,733,543
Number of Sequences: 2540612
Number of extensions: 4701874
Number of successful extensions: 13725
Number of sequences better than 10.0: 889
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 11811
Number of HSP's gapped (non-prelim): 909
length of query: 113
length of database: 863,360,394
effective HSP length: 89
effective length of query: 24
effective length of database: 637,245,926
effective search space: 15293902224
effective search space used: 15293902224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC127019.10