Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126787.10 - phase: 0 
         (306 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB78794.1| putative protein [Arabidopsis thaliana] gi|28946...   207  3e-52
dbj|BAB08909.1| unnamed protein product [Arabidopsis thaliana] g...   163  5e-39
ref|XP_450948.1| RING-H2 zinc finger protein ATL6-like [Oryza sa...   140  4e-32
gb|AAV43794.1| At2g35000 [Arabidopsis thaliana] gi|52627087|gb|A...   140  4e-32
emb|CAD40832.2| OSJNBa0086B14.4 [Oryza sativa (japonica cultivar...   129  1e-28
gb|AAT06451.1| At2g35420 [Arabidopsis thaliana] gi|42569636|ref|...   127  5e-28
gb|AAC36179.1| unknown protein [Arabidopsis thaliana] gi|2540837...   126  7e-28
ref|NP_174766.1| zinc finger (C3HC4-type RING finger) family pro...   126  7e-28
gb|AAO45753.1| RING/C3HC4/PHD zinc finger-like protein [Cucumis ...   126  9e-28
dbj|BAD36097.1| putative RING-H2 zinc finger protein [Oryza sati...   124  3e-27
ref|XP_483020.1| putative RING-H2 zinc finger protein [Oryza sat...   116  7e-25
gb|AAY78717.1| zinc finger (C3HC4-type RING finger) family prote...   116  9e-25
gb|AAF27026.1| putative RING-H2 zinc finger protein ATL6 [Arabid...   115  2e-24
gb|AAL86301.1| putative RING-H2 zinc finger protein ATL6 [Arabid...   115  2e-24
gb|AAW38988.1| At1g72200 [Arabidopsis thaliana] gi|15218389|ref|...   114  5e-24
gb|AAO42269.1| putative RING-H2 zinc finger protein ATL3 [Arabid...   114  5e-24
ref|NP_198094.1| zinc finger (C3HC4-type RING finger) family pro...   112  1e-23
gb|AAM60957.1| RING-H2 zinc finger protein-like [Arabidopsis tha...   112  2e-23
ref|NP_912558.1| Hypothetical protein [Oryza sativa (japonica cu...   108  1e-22
ref|XP_466364.1| putative RING-H2 zinc finger protein ATL6 [Oryz...   105  1e-21

>emb|CAB78794.1| putative protein [Arabidopsis thaliana] gi|2894601|emb|CAA17135.1|
           putative protein [Arabidopsis thaliana]
           gi|15236701|ref|NP_193526.1| zinc finger (C3HC4-type
           RING finger) family protein [Arabidopsis thaliana]
           gi|7459592|pir||T05078 hypothetical protein T6K21.100 -
           Arabidopsis thaliana
          Length = 289

 Score =  207 bits (527), Expect = 3e-52
 Identities = 121/280 (43%), Positives = 149/280 (53%), Gaps = 28/280 (10%)

Query: 6   PKYDTPPAPTYKTPPALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGSLV 65
           P    PP   Y TPP  V  T+ +L+  F+ F  +Y CK         W L     G  V
Sbjct: 8   PLAPQPPQQHYVTPPLTVILTVILLVFFFIGFFTLYFCKCFLDTMVQAWRLHH--GGDTV 65

Query: 66  RLSPDRSPSR-----GLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLR 120
             +P + P       GL+  ++  FPTF YSSVKDLR+EK Y LECAICLLEFD D +LR
Sbjct: 66  SDNPLQQPEAPPVNPGLELRIINSFPTFPYSSVKDLREEK-YGLECAICLLEFDGDHVLR 124

Query: 121 LLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLNVQEGMT 180
           LLT C HVFHQECIDLW ESH+TCPVCR DLD PP                  N +  + 
Sbjct: 125 LLTTCYHVFHQECIDLWFESHRTCPVCRRDLDPPPPPE---------------NTKPTVD 169

Query: 181 SLPCDDIHIDVRGEESDNVGEITRAQVHEGDQHDHHVGMSMQQQEDHRFSRSHSTGHSIV 240
            +  D I      EE D+  + T  Q+           +  +Q    +FSRSHSTGHSIV
Sbjct: 170 EMIIDVIQETSDDEEDDHHRQQTTTQIDTWPSSGQTSSIKKEQNLPEKFSRSHSTGHSIV 229

Query: 241 TIRGEEKDHEKYTLRLPEHV---IRGGHNYTRSCTNYNEM 277
             + EE+D  KYTLRLPEHV   +  GH+ T SC  + E+
Sbjct: 230 RNKPEEED--KYTLRLPEHVKIKVTRGHSQTESCVTFAEL 267


>dbj|BAB08909.1| unnamed protein product [Arabidopsis thaliana]
           gi|15237483|ref|NP_199477.1| zinc finger (C3HC4-type
           RING finger) family protein [Arabidopsis thaliana]
          Length = 289

 Score =  163 bits (413), Expect = 5e-39
 Identities = 100/277 (36%), Positives = 152/277 (54%), Gaps = 36/277 (12%)

Query: 12  PAPTYKTPPALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGSLVRLSPDR 71
           P   Y  PP ++  T+ +L++ F+ F  +Y CK  +      W           ++   +
Sbjct: 16  PPQHYSKPPLVIILTVILLVVFFIGFFAIYFCKCFYHTLTEAWNHHYHNGLPENQIQAQQ 75

Query: 72  SPSR-----GLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDS-MLRLLTIC 125
            P +     GL+  +++ +P F +SSVKDLR++K Y LECAICLLEF+++  +LRLLT C
Sbjct: 76  EPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDK-YGLECAICLLEFEEEHILLRLLTTC 134

Query: 126 CHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLNVQEGMTSLPCD 185
            HVFHQECID WLES+KTCPVCR +LD  PN                 N++E +  +  +
Sbjct: 135 YHVFHQECIDQWLESNKTCPVCRRNLD--PNAPE--------------NIKELIIEVIQE 178

Query: 186 DIHIDVRGEESDNVGEITRAQVHEGDQHDHHVGMSMQQQEDHRFSRSHSTGHSIVTIRGE 245
           + H +   E++    E+  ++   G+         ++   D +FSRS +TGHSIV  + E
Sbjct: 179 NAHENRDQEQTSTSNEVMLSRQSSGNNE-----RKIETLPD-KFSRSKTTGHSIVRNKPE 232

Query: 246 EKDHEKYTLRLPEHV-----IRGGHNYTRSCTNYNEM 277
           E+D  +YTLRLP+HV      R  +N T SC ++ E+
Sbjct: 233 EED--RYTLRLPDHVKIKVTRRHNNNQTESCISFGEL 267


>ref|XP_450948.1| RING-H2 zinc finger protein ATL6-like [Oryza sativa (japonica
           cultivar-group)] gi|47497675|dbj|BAD19742.1| RING-H2
           zinc finger protein ATL6-like [Oryza sativa (japonica
           cultivar-group)]
          Length = 392

 Score =  140 bits (354), Expect = 4e-32
 Identities = 94/278 (33%), Positives = 133/278 (47%), Gaps = 27/278 (9%)

Query: 2   SSSEPKYDTPPAPTYKT---PPALVAFTLTVLILCFVAFSVVYVCKYCFAGF--FHTWAL 56
           ++++P  D PPA  Y T   P   +   + +    F+ F  +YV ++C+ G   + T  L
Sbjct: 25  AAAQPSQDNPPAGYYATNFSPSMAIVIVVLIAAFFFLGFFSIYV-RHCYGGRGDYSTTPL 83

Query: 57  QRTTSGSLVRLSPDRSPSRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDD 116
            R+ +    R        RGLD ++L  FPT  Y+ VK  +  K  +LECA+C+ EFDDD
Sbjct: 84  PRSGAARSRR-------QRGLDQSVLATFPTMAYADVKAHKSVKG-ALECAVCISEFDDD 135

Query: 117 SMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDL----DSP--------PNQMSKHGEG 164
             LRLL  C HVFHQ+CID WL SH TCPVCR +L      P        P   +   EG
Sbjct: 136 ETLRLLPKCSHVFHQDCIDTWLASHATCPVCRANLVDGASEPASDVAAELPTAPAPRPEG 195

Query: 165 NHNNNNNNLNVQEGMTSLPCDDIHIDVRGEESDNVGEITRAQVHEGDQHDHHVGMSMQQQ 224
               +       E   +     + IDV   E + +     A++         +     + 
Sbjct: 196 -ATPSEAAAPGGEAPAAAAAAAVVIDVEETEEERIIREEAAELTRIGSLKRALRSKSGRA 254

Query: 225 EDHRFSRSHSTGHSIVTIRGEEKDHEKYTLRLPEHVIR 262
              RF RSHSTGHS+ +        E++TLRLPEHV+R
Sbjct: 255 PAARFPRSHSTGHSLSSSAAASAGAERFTLRLPEHVLR 292


>gb|AAV43794.1| At2g35000 [Arabidopsis thaliana] gi|52627087|gb|AAU84670.1|
           At2g35000 [Arabidopsis thaliana]
           gi|3033395|gb|AAC12839.1| putative RING zinc finger
           protein [Arabidopsis thaliana]
           gi|66865924|gb|AAY57596.1| RING finger family protein
           [Arabidopsis thaliana] gi|7485807|pir||T00481 probable
           RING zinc finger protein [imported] - Arabidopsis
           thaliana gi|15226874|ref|NP_181045.1| zinc finger
           (C3HC4-type RING finger) family protein [Arabidopsis
           thaliana]
          Length = 378

 Score =  140 bits (354), Expect = 4e-32
 Identities = 89/263 (33%), Positives = 136/263 (50%), Gaps = 28/263 (10%)

Query: 10  TPPAPTYKTP--PALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGS---L 64
           TPP  T   P  P +V  T+  L++ F+ F  ++ C+   A F  +   + T + +   +
Sbjct: 38  TPPGTTKTKPNDPVVVVITVLFLVIFFMVFGSIF-CRRSNAQFSRSSIFRSTDADAESQV 96

Query: 65  VRLSPDRSPSRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTI 124
           VR+   R  +RGLD   +E FPTFLYS VK +R  K   +ECA+CL EF+DD  LRL+  
Sbjct: 97  VRIR--RLTARGLDAEAIETFPTFLYSEVKAVRIGKG-GVECAVCLCEFEDDETLRLMPP 153

Query: 125 CCHVFHQECIDLWLESHKTCPVCRTDL-----DSPPNQMSKHGEGNHNNNNNNLNVQEGM 179
           CCHVFH +C+D+WL  H TCP+CR DL         +    +   +    +++ + + GM
Sbjct: 154 CCHVFHADCVDVWLSEHSTCPLCRADLVLNQQGDDDDSTESYSGTDPGTISSSTDPERGM 213

Query: 180 TSLPCDDIHIDVRGEESDNVGEITRAQVHEGDQHDHHVGMSMQQQEDHRFSRSHSTGHSI 239
                D   +D     + N+   +++            G+S  Q     F RSHSTGHS+
Sbjct: 214 VLESSDAHLLDAVTWSNSNITPRSKS-----------TGLSSWQITGILFPRSHSTGHSL 262

Query: 240 VTIRGEEKDHEKYTLRLPEHVIR 262
           +   G   + +++TLRLP+ V R
Sbjct: 263 IQPAG---NLDRFTLRLPDDVRR 282


>emb|CAD40832.2| OSJNBa0086B14.4 [Oryza sativa (japonica cultivar-group)]
           gi|50924608|ref|XP_472662.1| OSJNBa0086B14.4 [Oryza
           sativa (japonica cultivar-group)]
          Length = 387

 Score =  129 bits (324), Expect = 1e-28
 Identities = 96/274 (35%), Positives = 127/274 (46%), Gaps = 27/274 (9%)

Query: 2   SSSEPKYDTPPAPTYK--TP---PALVAFTLTVLILCFVAFSVVYV--CKYCFAGFFHTW 54
           SS+ P   T  APT +  TP         T+++ +  F+ F   Y+  C+   AG     
Sbjct: 25  SSASPAPATSQAPTVRQQTPFGRTMSTVITVSISVFFFLLFFCAYINQCRLAEAG--DAR 82

Query: 55  ALQRTTSGSLVRLSPDRSPSRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFD 114
           A     +G      P R   RGLD  ++  FP   Y  V   +  KS  LECA+CL  FD
Sbjct: 83  AAAAAAAGGGAGGGPSRRGKRGLDPAVVATFPIVPYREVVKHKIGKSV-LECAVCLTSFD 141

Query: 115 DDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLN 174
           D   LRLL  C H FH ECID WLES  TCP+CR +L+ PP            + +   +
Sbjct: 142 DGDDLRLLPHCSHAFHPECIDPWLESRVTCPLCRANLEKPPPPPPPPPAAAAASPSPERS 201

Query: 175 VQEGMTSLPCDDIH---IDVRGEESDNVGEITRAQVHEGDQHDHHVGMSMQQQEDH--RF 229
            +   +  P    H   I V  EE D+          E D+ +  V + M + E    R 
Sbjct: 202 PRCQPSPPPPPPPHALVIPVEDEEDDS---------DEDDRKEEAVELEMLRSERRAARL 252

Query: 230 SRSHSTGHSIVT---IRGEEKDHEKYTLRLPEHV 260
            RSHSTGHS+V       E  DHE++TLRLP+HV
Sbjct: 253 PRSHSTGHSLVASAAAAAESGDHERFTLRLPQHV 286


>gb|AAT06451.1| At2g35420 [Arabidopsis thaliana] gi|42569636|ref|NP_181085.2| zinc
           finger (C3HC4-type RING finger) family protein
           [Arabidopsis thaliana]
          Length = 254

 Score =  127 bits (318), Expect = 5e-28
 Identities = 90/281 (32%), Positives = 127/281 (45%), Gaps = 56/281 (19%)

Query: 3   SSEPKYDTPPAPTY---KTPPALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRT 59
           SS    D+ PA       + P  V  T  +L + F  F  +++ ++     F TW LQRT
Sbjct: 2   SSTTSIDSIPATAVFPSVSMPVTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQRT 61

Query: 60  TSGSLVRLSPDRSPSRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSML 119
             G L+ ++     + GLD  ++  FP F YSS      +K++  ECAICL EF D+  +
Sbjct: 62  PYGDLIHVATPPE-NTGLDPFIIRSFPVFHYSSAT----KKNHGTECAICLSEFSDEDTV 116

Query: 120 RLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLNVQEGM 179
           RL+T+C H FH  CIDLW E HKTCPVCR +LD  P  +   G G               
Sbjct: 117 RLITVCRHPFHSNCIDLWFELHKTCPVCRCELD--PGMI---GSG--------------- 156

Query: 180 TSLPCDDIHIDVRGEESDNVGEITRAQVHEGDQHDHHVGMSMQ--QQEDHRFSRSHSTGH 237
                       R E   N   IT   ++  +++    G S +  +    RFSRSHSTGH
Sbjct: 157 ------------RLESFHNTVTITIQDINHDEENPPTAGSSKRLIEASAWRFSRSHSTGH 204

Query: 238 SIV-TIRGEEKDHEKYTLRLPEHVIRGGHNYTRSCTNYNEM 277
            +V T     K   +             H  T SC +++E+
Sbjct: 205 FMVKTTDANVKSKRR-------------HYQTGSCVSFDEL 232


>gb|AAC36179.1| unknown protein [Arabidopsis thaliana] gi|25408377|pir||D84768
           hypothetical protein At2g35420 [imported] - Arabidopsis
           thaliana
          Length = 234

 Score =  126 bits (317), Expect = 7e-28
 Identities = 85/261 (32%), Positives = 120/261 (45%), Gaps = 53/261 (20%)

Query: 20  PALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGSLVRLSPDRSPSRGLDN 79
           P  V  T  +L + F  F  +++ ++     F TW LQRT  G L+ ++     + GLD 
Sbjct: 2   PVTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQRTPYGDLIHVATPPE-NTGLDP 60

Query: 80  TLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLE 139
            ++  FP F YSS      +K++  ECAICL EF D+  +RL+T+C H FH  CIDLW E
Sbjct: 61  FIIRSFPVFHYSSAT----KKNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFE 116

Query: 140 SHKTCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLNVQEGMTSLPCDDIHIDVRGEESDNV 199
            HKTCPVCR +LD  P  +   G G                           R E   N 
Sbjct: 117 LHKTCPVCRCELD--PGMI---GSG---------------------------RLESFHNT 144

Query: 200 GEITRAQVHEGDQHDHHVGMSMQ--QQEDHRFSRSHSTGHSIV-TIRGEEKDHEKYTLRL 256
             IT   ++  +++    G S +  +    RFSRSHSTGH +V T     K   +     
Sbjct: 145 VTITIQDINHDEENPPTAGSSKRLIEASAWRFSRSHSTGHFMVKTTDANVKSKRR----- 199

Query: 257 PEHVIRGGHNYTRSCTNYNEM 277
                   H  T SC +++E+
Sbjct: 200 --------HYQTGSCVSFDEL 212


>ref|NP_174766.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis
           thaliana] gi|12322941|gb|AAG51457.1| RING zinc finger
           protein, putative [Arabidopsis thaliana]
           gi|25403229|pir||D86474 probable RING zinc finger
           protein [imported] - Arabidopsis thaliana
          Length = 327

 Score =  126 bits (317), Expect = 7e-28
 Identities = 92/265 (34%), Positives = 127/265 (47%), Gaps = 22/265 (8%)

Query: 5   EPKYDTPPAPTYK---TPPALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTS 61
           +P+   PP    +    P  ++A  +  L+   +A  V Y  KY       T +   T  
Sbjct: 29  QPRTTAPPYIAQRPNQVPAVIIAMLMFTLLFSMLACCVCY--KYTNTSPHGTSS--DTEE 84

Query: 62  GSLVRLSPDRSPSRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRL 121
           G    ++  R  SRGL   ++  FP+FLYS VK L+  K   +ECAICL EF+D+  LRL
Sbjct: 85  GGHGEVAFTRRTSRGLGKDVINSFPSFLYSQVKGLKIGKG-GVECAICLNEFEDEETLRL 143

Query: 122 LTICCHVFHQECIDLWLESHKTCPVCRTDLDSPP----NQMSKHGEGNHNNNNNNLNVQE 177
           +  C H FH  CID+WL S  TCPVCR  L   P    N +      + N + +  NV  
Sbjct: 144 MPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPGSDQNSLYPFIRPHDNQDMDLENVTA 203

Query: 178 GMTSLPCDDIHIDVRGEESDNVGEITRAQVHEGDQHDHHVGMSMQQQEDHRFSRSHSTGH 237
             + L   D+ +  R   S+N G  T              G+S  +  +  F RSHSTGH
Sbjct: 204 RRSVLESPDVRLLDRLSWSNNTGANT-------PPRSRSTGLSNWRITELLFPRSHSTGH 256

Query: 238 SIVTIRGEEKDHEKYTLRLPEHVIR 262
           S+V  R E  D  ++TL+LPE V R
Sbjct: 257 SLVP-RVENLD--RFTLQLPEEVRR 278


>gb|AAO45753.1| RING/C3HC4/PHD zinc finger-like protein [Cucumis melo]
          Length = 379

 Score =  126 bits (316), Expect = 9e-28
 Identities = 91/271 (33%), Positives = 130/271 (47%), Gaps = 47/271 (17%)

Query: 12  PAPTYKTPP--------ALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGS 63
           PAP  ++ P          V   + +  L F+AF  VY+ ++C     +T       +G 
Sbjct: 30  PAPDPRSDPYQYRLSGSMAVIIVILIAALFFMAFFSVYI-RHCNDSPSNTVRPITAAAGR 88

Query: 64  LVRLSPDRSPSRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLT 123
                  R  +RGLD  ++E FPT +YS VK+ +  KS +LECA+CL EF+DD  LRL+ 
Sbjct: 89  ------SRRATRGLDPAVIETFPTLIYSDVKEHKIGKS-ALECAVCLNEFEDDETLRLIP 141

Query: 124 ICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLNVQEGMTSLP 183
            C HVFH ECID WL SH TCPVCR +L   P       +  H  +++N  V        
Sbjct: 142 KCDHVFHPECIDAWLASHSTCPVCRANLSPQPT------DSVHRADDSNAVVNS------ 189

Query: 184 CDDIHIDVRGEESDNVGEITRAQVHEGDQHDHHVGMSMQQQEDHR--------------F 229
            D    D+  + +D V E T     +  Q +  +  +   +  +R              F
Sbjct: 190 -DTDGGDIEAQSNDVVSETTAPPTVQ-IQTESELSTTTSNKALNRTRTRGSRSNRLRWLF 247

Query: 230 SRSHSTGHSIVTIRGEEKDHEKYTLRLPEHV 260
            RSHSTGHS+V      +D E++TLRLP  +
Sbjct: 248 PRSHSTGHSLVQ---PGEDTERFTLRLPVEI 275


>dbj|BAD36097.1| putative RING-H2 zinc finger protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 442

 Score =  124 bits (312), Expect = 3e-27
 Identities = 88/253 (34%), Positives = 123/253 (47%), Gaps = 15/253 (5%)

Query: 13  APTYKTPPALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGSLVRLSPDRS 72
           +P++  P  ++   L +    F+ F  +Y+ + C         +      +L R      
Sbjct: 62  SPSFSAPMVVLLVAL-IAAFFFIGFFSIYI-RRCGGEASTGPTIPAAALAALSRQEQRSR 119

Query: 73  PSRGLDNTLLEKFPTFLYSSVKDLRKE-KSYSLECAICLLEFDDDSMLRLLTICCHVFHQ 131
             RGLD  ++E FPT  Y+  ++LR   K   LECA+CL EFDDD  LRLL  C H FH 
Sbjct: 120 RQRGLDPAVVESFPTMKYAEARELRDGGKDAVLECAVCLSEFDDDEELRLLPKCSHAFHP 179

Query: 132 ECIDLWLESHKTCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLNVQEGMTSLPCDDIHIDV 191
           +CI  WL  H TCPVCR +L   P+  +   E N  +   +   QE    +  D   +D 
Sbjct: 180 DCIGEWLAGHVTCPVCRCNL--APDAAA--AEANVVSGEVDGEQQEEEVVVAID---VDR 232

Query: 192 RGEESDNVGEITRAQVHEGDQ-HDHHVGMSMQQQEDHRFSRSHSTGHSIVTIR-GEEKDH 249
            GEE D   E  R +  E ++       +  +        RSHSTGHS+ T R G+  D 
Sbjct: 233 EGEEED---EERRREAMELERIGSQRRAVRSRSGRPLPLPRSHSTGHSLATTRLGDAGDL 289

Query: 250 EKYTLRLPEHVIR 262
           E++TLRLPEHV R
Sbjct: 290 ERFTLRLPEHVRR 302


>ref|XP_483020.1| putative RING-H2 zinc finger protein [Oryza sativa (japonica
           cultivar-group)] gi|42409391|dbj|BAD10704.1| putative
           RING-H2 zinc finger protein [Oryza sativa (japonica
           cultivar-group)] gi|42408167|dbj|BAD09305.1| putative
           RING-H2 zinc finger protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 413

 Score =  116 bits (291), Expect = 7e-25
 Identities = 89/283 (31%), Positives = 124/283 (43%), Gaps = 47/283 (16%)

Query: 12  PAPTYKTPPALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGSL------- 64
           P P Y  P +       V+++   AF         F GFF  + ++R   G L       
Sbjct: 41  PGPNYFNPKSFNPSMAVVIVVLVTAFF--------FLGFFSIY-IRRCAGGPLGGPGGYG 91

Query: 65  ------------VRLSPDRSPS-RGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLL 111
                          +  RS   RGLD  +L  FPT  Y+ VK  +  K  +LECA+CL 
Sbjct: 92  VGGGGGGRVGGGFTFAAARSRRVRGLDPAVLGAFPTMAYADVKAHKAGKG-ALECAVCLS 150

Query: 112 EFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLD-----SPPNQMSKHGEGNH 166
           EFDDD  LRLL  C H FH +CID WL SH TCPVCR +L       PP     H     
Sbjct: 151 EFDDDETLRLLPRCSHAFHADCIDAWLASHVTCPVCRANLAFDAGVPPPPLAPPHA---- 206

Query: 167 NNNNNNLNVQEGMTSLPCDDIHIDVRGEESDNVGEITRAQVHEGDQHDHHVGMSMQQQED 226
                ++       + P + + +DV   +++   E  R +          V  +++ +  
Sbjct: 207 LTTGQDVAAAPPQPAAP-EQVTVDVVVADAEETEERIRREEAAELMRIGSVKRALRSKSG 265

Query: 227 HR---FSRSHSTGHSIVTIRG----EEKDHEKYTLRLPEHVIR 262
            R   F RSH+TGHS+          +   E+YTLRLP+HV+R
Sbjct: 266 RRPPQFPRSHTTGHSLAAAAAVPATADDAAERYTLRLPDHVLR 308


>gb|AAY78717.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis
           thaliana] gi|3033394|gb|AAC12838.1| putative RING zinc
           finger protein [Arabidopsis thaliana]
           gi|15226873|ref|NP_181044.1| zinc finger (C3HC4-type
           RING finger) family protein [Arabidopsis thaliana]
           gi|7459591|pir||T00480 probable RING zinc finger protein
           At2g34990 [imported] - Arabidopsis thaliana
          Length = 302

 Score =  116 bits (290), Expect = 9e-25
 Identities = 80/241 (33%), Positives = 113/241 (46%), Gaps = 33/241 (13%)

Query: 26  TLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTS---GSLVRLSPDRSPSRGLDNTLL 82
           TL V+ +   A  +V +   CF      +  Q + +    S V      +  RGLD  ++
Sbjct: 14  TLLVITIILFAIFIVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSITAVRGLDEAII 73

Query: 83  EKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHK 142
             FPTFLYS VK+ R+     +ECA+C+ EF+D   LRL+  CCHVFH +C+ +WL  H 
Sbjct: 74  NSFPTFLYSEVKE-RRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHS 132

Query: 143 TCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLNVQEGMTSLPCDDIHIDVRGEESDNVGEI 202
           TCP+CR DL   P      GE ++ N              P  D+         D V   
Sbjct: 133 TCPLCRVDLCLQP------GERSYLN--------------PEPDLVESTNSHLFDGVTWT 172

Query: 203 TRAQVHEGDQHDHHVGMSMQQQEDHRFSRSHSTGHSIVTIRGEEKDH-EKYTLRLPEHVI 261
            R +            +S  +      SRSHSTGHS+V    +  D+ +++TLRLPE V 
Sbjct: 173 NRNR----PSRSWSTRLSQCRVSQILISRSHSTGHSVV----QPLDNLDRFTLRLPEEVR 224

Query: 262 R 262
           R
Sbjct: 225 R 225


>gb|AAF27026.1| putative RING-H2 zinc finger protein ATL6 [Arabidopsis thaliana]
          Length = 392

 Score =  115 bits (288), Expect = 2e-24
 Identities = 92/264 (34%), Positives = 128/264 (47%), Gaps = 34/264 (12%)

Query: 2   SSSEPKYDTPPAPTYKTPPAL-VAFTLTVLILCFVAFSVVYVCKYCF----AGFFHTWAL 56
           S S+P     P    +  PA+ V   + +  L F+ F  +Y  ++C     AG       
Sbjct: 23  SQSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYF-RHCSGVPDAGV------ 75

Query: 57  QRTTSGSLVRLSPDRSPSRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDD 116
             + +G     +   + +RGLD +++E FPTFLYS VK  +  K   LECAICL EF+DD
Sbjct: 76  --SPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKG-ELECAICLNEFEDD 132

Query: 117 SMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLNVQ 176
             LRLL  C HVFH  CID WLE+H TCPVCR +L     +    GE          +V+
Sbjct: 133 ETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANL----AEQVAEGE----------SVE 178

Query: 177 EGMTSLPCDDIHIDVRGEESDNVGEITRAQVHEGDQHDHHVGMSMQQQEDHRFSRSHSTG 236
            G T  P  ++   V   E      +    V          G+ +  +   +FSRSH+TG
Sbjct: 179 PGGTE-PDLELQQVVVNPEPVVTAPVPEQLVTSEVDSRRLPGVPVDLKR-VKFSRSHTTG 236

Query: 237 HSIVTIRGEEKDHEKYTLRLPEHV 260
           HS+V      +  E++TLRLPE V
Sbjct: 237 HSVVQ---PGECTERFTLRLPEDV 257


>gb|AAL86301.1| putative RING-H2 zinc finger protein ATL6 [Arabidopsis thaliana]
          Length = 388

 Score =  115 bits (288), Expect = 2e-24
 Identities = 92/264 (34%), Positives = 128/264 (47%), Gaps = 34/264 (12%)

Query: 2   SSSEPKYDTPPAPTYKTPPAL-VAFTLTVLILCFVAFSVVYVCKYCF----AGFFHTWAL 56
           S S+P     P    +  PA+ V   + +  L F+ F  +Y  ++C     AG       
Sbjct: 29  SQSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYF-RHCSGVPDAGV------ 81

Query: 57  QRTTSGSLVRLSPDRSPSRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDD 116
             + +G     +   + +RGLD +++E FPTFLYS VK  +  K   LECAICL EF+DD
Sbjct: 82  --SPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKG-ELECAICLNEFEDD 138

Query: 117 SMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLNVQ 176
             LRLL  C HVFH  CID WLE+H TCPVCR +L     +    GE          +V+
Sbjct: 139 ETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANL----AEQVAEGE----------SVE 184

Query: 177 EGMTSLPCDDIHIDVRGEESDNVGEITRAQVHEGDQHDHHVGMSMQQQEDHRFSRSHSTG 236
            G T  P  ++   V   E      +    V          G+ +  +   +FSRSH+TG
Sbjct: 185 PGGTE-PDLELQQVVVNPEPVVTAPVPEQLVTSEVDSRRLPGVPVDLKR-VKFSRSHTTG 242

Query: 237 HSIVTIRGEEKDHEKYTLRLPEHV 260
           HS+V      +  E++TLRLPE V
Sbjct: 243 HSVVQ---PGECTERFTLRLPEDV 263


>gb|AAW38988.1| At1g72200 [Arabidopsis thaliana] gi|15218389|ref|NP_177365.1| zinc
           finger (C3HC4-type RING finger) family protein
           [Arabidopsis thaliana] gi|12323662|gb|AAG51795.1|
           RING-H2 zinc finger protein ATL3, putative; 35094-33880
           [Arabidopsis thaliana] gi|25406155|pir||E96745
           hypothetical protein T9N14.11 [imported] - Arabidopsis
           thaliana
          Length = 404

 Score =  114 bits (284), Expect = 5e-24
 Identities = 64/143 (44%), Positives = 82/143 (56%), Gaps = 16/143 (11%)

Query: 25  FTLTVLILCFVAFSVVYVCKYCFAGFFHTW---ALQRTTSGSLVR-------LSPDRSPS 74
           F  T+ IL  V  SV +     F GFF  +    L+R               L+ +R  +
Sbjct: 59  FDPTMAILMIVLVSVFF-----FLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQA 113

Query: 75  RGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECI 134
           RGLD +++E FPTF YS+VK LR  K  +LEC++CL EF+DD  LRL+  CCHVFH  CI
Sbjct: 114 RGLDASIIETFPTFQYSTVKTLRIGKE-ALECSVCLNEFEDDETLRLIPKCCHVFHPGCI 172

Query: 135 DLWLESHKTCPVCRTDLDSPPNQ 157
           D WL SH TCP+CR DL   P +
Sbjct: 173 DAWLRSHTTCPLCRADLIPVPGE 195


>gb|AAO42269.1| putative RING-H2 zinc finger protein ATL3 [Arabidopsis thaliana]
          Length = 404

 Score =  114 bits (284), Expect = 5e-24
 Identities = 64/143 (44%), Positives = 82/143 (56%), Gaps = 16/143 (11%)

Query: 25  FTLTVLILCFVAFSVVYVCKYCFAGFFHTW---ALQRTTSGSLVR-------LSPDRSPS 74
           F  T+ IL  V  SV +     F GFF  +    L+R               L+ +R  +
Sbjct: 59  FDPTMAILMIVLVSVFF-----FLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQA 113

Query: 75  RGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECI 134
           RGLD +++E FPTF YS+VK LR  K  +LEC++CL EF+DD  LRL+  CCHVFH  CI
Sbjct: 114 RGLDASIIETFPTFQYSTVKTLRIGKE-ALECSVCLNEFEDDETLRLIPKCCHVFHPGCI 172

Query: 135 DLWLESHKTCPVCRTDLDSPPNQ 157
           D WL SH TCP+CR DL   P +
Sbjct: 173 DAWLRSHTTCPLCRADLIPVPGE 195


>ref|NP_198094.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis
           thaliana]
          Length = 368

 Score =  112 bits (280), Expect = 1e-23
 Identities = 82/245 (33%), Positives = 114/245 (46%), Gaps = 56/245 (22%)

Query: 18  TPPALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQR--TTSGSLVRLSPDRSPSR 75
           +P   V   + +  L F+ F  VY+ ++C      T A+    T +G   R   + + +R
Sbjct: 42  SPAMAVVVVVVIAALFFMGFFTVYI-RHC------TGAVDGSVTPAGGARRRVTNATVAR 94

Query: 76  GLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECID 135
           GLD   +E FPTF+YS VK  +  K  +LECAICL EF+DD  LRLL  C HVFH  CI 
Sbjct: 95  GLDAETIETFPTFVYSEVKTQKIGKG-ALECAICLNEFEDDETLRLLPKCDHVFHPHCIG 153

Query: 136 LWLESHKTCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLNVQEGMTSLPCDDIHIDVRGEE 195
            WL+ H TCPVCRT+L                            T  P   +  D+    
Sbjct: 154 AWLQGHVTCPVCRTNLAE-------------------------QTPEPEVVVETDLEA-- 186

Query: 196 SDNVGEITRAQVHEGDQHDHHVGMSMQQQEDHRFSRSHSTGHSIVTIRGEEKDHEKYTLR 255
                           Q    V + + +    +F RSH+TGHS+V + GE  D  ++TLR
Sbjct: 187 ----------------QQQSAVPVPVVELPRVKFPRSHTTGHSVV-LPGESTD--RFTLR 227

Query: 256 LPEHV 260
           +PE +
Sbjct: 228 VPEEL 232


>gb|AAM60957.1| RING-H2 zinc finger protein-like [Arabidopsis thaliana]
          Length = 368

 Score =  112 bits (279), Expect = 2e-23
 Identities = 82/245 (33%), Positives = 114/245 (46%), Gaps = 56/245 (22%)

Query: 18  TPPALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQR--TTSGSLVRLSPDRSPSR 75
           +P   V   + +  L F+ F  VY+ ++C      T A+    T +G   R   + + +R
Sbjct: 42  SPAMAVVVVVVIAALFFMGFFTVYI-RHC------TGAVDGSVTPAGGARRRVTNATVAR 94

Query: 76  GLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECID 135
           GLD   +E FPTF+YS VK  +  K  +LECAICL EF+DD  LRLL  C HVFH  CI 
Sbjct: 95  GLDVETIETFPTFVYSEVKTQKIGKG-ALECAICLNEFEDDETLRLLPKCDHVFHPHCIG 153

Query: 136 LWLESHKTCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLNVQEGMTSLPCDDIHIDVRGEE 195
            WL+ H TCPVCRT+L                            T  P   +  D+    
Sbjct: 154 AWLQGHVTCPVCRTNLAE-------------------------QTPEPEVVVETDLEA-- 186

Query: 196 SDNVGEITRAQVHEGDQHDHHVGMSMQQQEDHRFSRSHSTGHSIVTIRGEEKDHEKYTLR 255
                           Q    V + + +    +F RSH+TGHS+V + GE  D  ++TLR
Sbjct: 187 ----------------QQQSAVPVPVVELPRVKFPRSHTTGHSVV-LPGESTD--RFTLR 227

Query: 256 LPEHV 260
           +PE +
Sbjct: 228 VPEEL 232


>ref|NP_912558.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
           gi|24756877|gb|AAN64141.1| Hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 353

 Score =  108 bits (271), Expect = 1e-22
 Identities = 77/248 (31%), Positives = 112/248 (45%), Gaps = 35/248 (14%)

Query: 25  FTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGSLVRLSPDRSP----------S 74
           FT T +++  VA    +V    F+   +  A  R       R +    P          S
Sbjct: 43  FTPTTVVV-LVALITAFVLLTVFSVLINRCAQARAPPRRAFRSTASHQPVGGAAAASRAS 101

Query: 75  RGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECI 134
           RGLD  ++E FPT +Y  VK     KS  LECA+CL EF D   LR+L  CCHVFH +CI
Sbjct: 102 RGLDKEVVEAFPTAVYGDVKARMAAKSGPLECAVCLAEFADSDELRVLPACCHVFHPDCI 161

Query: 135 DLWLESHKTCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLNVQEGMTSLPCDDIHIDVRGE 194
           D WL +  TCP+CR +L +PP  ++          +++L   E             V+ E
Sbjct: 162 DPWLAAAVTCPLCRANLTAPPVSLAA-------AESSDLTAPEEA-----------VQEE 203

Query: 195 ESDNVGEITRAQVHEGDQHDHHVGMSMQQQEDHRFSRSHSTGHSIVTIRGEEKDHEKYTL 254
           ES+ + E +       +       +      DH F R+    H   T    +   +++TL
Sbjct: 204 ESEELDEASLMATFTPES-----VIDFGATHDHEFDRA-GYPHYRRTQSAMDAAPDRHTL 257

Query: 255 RLPEHVIR 262
           RLPEHV++
Sbjct: 258 RLPEHVMK 265


>ref|XP_466364.1| putative RING-H2 zinc finger protein ATL6 [Oryza sativa (japonica
           cultivar-group)] gi|46806007|dbj|BAD17281.1| putative
           RING-H2 zinc finger protein ATL6 [Oryza sativa (japonica
           cultivar-group)]
          Length = 349

 Score =  105 bits (263), Expect = 1e-21
 Identities = 67/193 (34%), Positives = 94/193 (47%), Gaps = 14/193 (7%)

Query: 75  RGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECI 134
           RGLD   +   P   Y+ V+  R     +LECA+CL  FDD   LRLL  C H FH +CI
Sbjct: 92  RGLDPAAVAAIPVVPYAEVRKHRSGGGGALECAVCLTVFDDGDDLRLLPQCSHAFHPDCI 151

Query: 135 DLWLESHKTCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLNVQEGMTSLPCDDIHIDVRGE 194
           D WLE H TCP+CR +L+  P       E + +        +E  T      + ++   E
Sbjct: 152 DPWLEGHVTCPLCRANLEKQPAPSPPAVEFSSSPAAAAAAAEESRTP-EAAAVRVEEVAE 210

Query: 195 ESDNVGEITRAQVHEGDQHDHHVGMSMQQQEDHRFSRSHSTGHSIVTI-------RGEEK 247
            SD   E TR +  E  + +    +    +   R  RS+STGHS+  +        G+  
Sbjct: 211 ASDE--EETRRREEEAVELESLRAV----RRAARMPRSNSTGHSLCALPAPRAPGPGDGG 264

Query: 248 DHEKYTLRLPEHV 260
           DHE++T+RLP HV
Sbjct: 265 DHERFTVRLPPHV 277


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.319    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 575,028,089
Number of Sequences: 2540612
Number of extensions: 25106096
Number of successful extensions: 276410
Number of sequences better than 10.0: 2393
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 939
Number of HSP's that attempted gapping in prelim test: 268125
Number of HSP's gapped (non-prelim): 5087
length of query: 306
length of database: 863,360,394
effective HSP length: 127
effective length of query: 179
effective length of database: 540,702,670
effective search space: 96785777930
effective search space used: 96785777930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)


Medicago: description of AC126787.10