BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126782.2 - phase: 0 /pseudo
         (912 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD43257.1| reverse transcriptase [Beta nana]                      71  2e-10

>emb|CAD43257.1| reverse transcriptase [Beta nana]
          Length = 88

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 43/83 (51%), Positives = 48/83 (57%)

Query: 519 FFMVN*KKQCTCTNLWDLKILKTPIMYAFFANHSMGLNKLLELGVSDLPTTCHLLVFLKA 578
           F   N KKQ TC NLWDLKIL   IM A   + SMGLNKL ELG SDL T   LL  L  
Sbjct: 4   FCTANSKKQFTCINLWDLKILIILIMSAVSRSLSMGLNKLPELGTSDLQTMFPLLASLTV 63

Query: 579 NVITLFSCTRKTLIWHIFYSRLM 601
           ++ TL S T   +I H  +S  M
Sbjct: 64  SLTTLSSFTTMVMILHTSFSTWM 86


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.346    0.153    0.515 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,381,841,107
Number of Sequences: 2540612
Number of extensions: 54209891
Number of successful extensions: 193561
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 193560
Number of HSP's gapped (non-prelim): 1
length of query: 912
length of database: 863,360,394
effective HSP length: 137
effective length of query: 775
effective length of database: 515,296,550
effective search space: 399354826250
effective search space used: 399354826250
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 80 (35.4 bits)