BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126781.9 + phase: 0
(195 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi... 257 1e-67
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 248 5e-65
emb|CAB79159.1| LTR retrotransposon like protein [Arabidopsis th... 248 7e-65
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 247 1e-64
gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|2... 246 2e-64
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 242 4e-63
gb|AAR24647.1| At2g23330 [Arabidopsis thaliana] gi|22655202|gb|A... 242 4e-63
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 236 3e-61
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi... 233 2e-60
pir||E96608 probable retroelement polyprotein F25P12.89 [importe... 226 3e-58
gb|AAC98469.1| putative retroelement pol polyprotein [Arabidopsi... 221 1e-56
dbj|BAD99221.1| polypepetide with reverse transcriptase and RNas... 216 4e-55
gb|AAU89728.1| putative retroelement pol polyprotein-like [Solan... 213 3e-54
gb|AAT40550.1| putative receptor kinase [Solanum demissum] 207 2e-52
gb|AAU89730.1| putative polyprotein [Solanum tuberosum] 205 5e-52
gb|AAC62795.1| contains similarity to retroviral aspartyl protea... 199 3e-50
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi... 198 8e-50
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 196 2e-49
gb|AAD41979.1| putative retroelement pol polyprotein [Arabidopsi... 196 4e-49
emb|CAA72990.1| unnamed protein product [Brassica oleracea] gi|7... 196 4e-49
>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301700|pir||G84542 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1333
Score = 257 bits (657), Expect = 1e-67
Identities = 124/195 (63%), Positives = 151/195 (76%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M +PR +HW AALRVVR+LK +PGQG+F D ++ GWCDSDWA P++RRSVTG+ V
Sbjct: 1139 MQEPREDHWAAALRVVRYLKADPGQGVFLRRSGDFQITGWCDSDWAGDPMSRRSVTGYFV 1198
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
Q GDSPISWKTKKQ TVS+SSAEAEYR+M+ EL WLK +L +LGV H +PMI+ CDS
Sbjct: 1199 QFGDSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQLLFSLGVSHVQPMIMCCDS 1258
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
++AI+IA NPVFHERTKHIE+D HFVR+E +K I P +V T +Q ADIFTK LG+ F
Sbjct: 1259 KSAIYIATNPVFHERTKHIEIDYHFVRDEFVKGVITPRHVGTTSQLADIFTKPLGRDCFS 1318
Query: 181 FLLGKLGIRNLHAPT 195
KLGIRNL+APT
Sbjct: 1319 AFRIKLGIRNLYAPT 1333
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 248 bits (634), Expect = 5e-65
Identities = 120/195 (61%), Positives = 150/195 (76%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M PR +HW AA+RVVR+LK NPGQGI S S L+++GWCDSD+A+CPLTRRS+TG+ V
Sbjct: 915 MQNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFV 974
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
QLGD+PISWKTKKQ TVSRSSAEAEYR+MA T EL WLK +L +LGV H + M I DS
Sbjct: 975 QLGDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDS 1034
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
++AI ++ NPV HERTKH+EVDCHF+R+ +L I +V + Q ADI TKALG+ +
Sbjct: 1035 KSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVR 1094
Query: 181 FLLGKLGIRNLHAPT 195
+ L KLGI ++HAPT
Sbjct: 1095 YFLRKLGILDVHAPT 1109
>emb|CAB79159.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|2961349|emb|CAA18107.1| LTR retrotransposon like
protein [Arabidopsis thaliana] gi|11358464|pir||T49111
hypothetical retrovirus-related pol polyprotein AT4g22040
- Arabidopsis thaliana
Length = 1109
Score = 248 bits (633), Expect = 7e-65
Identities = 119/195 (61%), Positives = 150/195 (76%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M PR +HW AA+RVVR+LK NPGQGI S S L+++GWCDSD+A+CPLTRRS+TG+ V
Sbjct: 915 MQNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFV 974
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
QLGD+PISWKTKKQ T+SRSSAEAEYR+MA T EL WLK +L +LGV H + M I DS
Sbjct: 975 QLGDTPISWKTKKQPTISRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDS 1034
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
++AI ++ NPV HERTKH+EVDCHF+R+ +L I +V + Q ADI TKALG+ +
Sbjct: 1035 KSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVR 1094
Query: 181 FLLGKLGIRNLHAPT 195
+ L KLGI ++HAPT
Sbjct: 1095 YFLRKLGILDVHAPT 1109
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301698|pir||C84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1501
Score = 247 bits (630), Expect = 1e-64
Identities = 118/195 (60%), Positives = 145/195 (73%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M PR H++AALRVVR+LKG+PGQGI + DL L +CDSDW SCPLTRRS++ ++V
Sbjct: 1307 MQNPREAHFDAALRVVRYLKGSPGQGILLNADPDLTLEVYCDSDWQSCPLTRRSISAYVV 1366
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
LG SPISWKTKKQ TVS SSAEAEYR+M+ E+KWL+ +L LG+ P ++CDS
Sbjct: 1367 LLGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKEIKWLRKLLKELGIEQSTPARLYCDS 1426
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
+AAIHIA NPVFHERTKHIE DCH VR+ V I +V T Q AD+FTKALG+ QF
Sbjct: 1427 KAAIHIAANPVFHERTKHIESDCHSVRDAVRDGIITTQHVRTTEQLADVFTKALGRNQFL 1486
Query: 181 FLLGKLGIRNLHAPT 195
+L+ KLG++NLH PT
Sbjct: 1487 YLMSKLGVQNLHTPT 1501
>gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|25301686|pir||F96610
probable polyprotein T8L23.26 [imported] - Arabidopsis
thaliana
Length = 1468
Score = 246 bits (629), Expect = 2e-64
Identities = 119/194 (61%), Positives = 149/194 (76%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M PR +HW AA+RVVR+LK NPGQGI S S L+++GWCDSD+A+CPLTRRS+TG+ V
Sbjct: 1274 MQNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFV 1333
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
QLGD+PISWKTKKQ TVSRSSAEAEYR+MA T EL WLK +L +LGV H + M I DS
Sbjct: 1334 QLGDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDS 1393
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
++AI ++ NPV HERTKH+EVDCHF+R+ +L I +V + Q ADI TKALG+ +
Sbjct: 1394 KSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVR 1453
Query: 181 FLLGKLGIRNLHAP 194
+ L KLGI ++HAP
Sbjct: 1454 YFLRKLGILDVHAP 1467
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|7444418|pir||T00499 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1496
Score = 242 bits (618), Expect = 4e-63
Identities = 118/188 (62%), Positives = 143/188 (75%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M P HWEAALR+VR+LKG+P QGIF S S L ++ +CDSD+ +CPLTRRS++ ++V
Sbjct: 1302 MQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLIINAYCDSDYNACPLTRRSLSAYVV 1361
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
LGDSPISWKTKKQ TVS SSAEAEYR+MA T ELKWLK +L +LGV H PM +HCDS
Sbjct: 1362 YLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWLKALLKDLGVHHSSPMKLHCDS 1421
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
+AAIHIA NPVFHERTKHIE DCH VR+ VL I ++ T +Q AD+ TK+L +P FE
Sbjct: 1422 EAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLITTEHIYTEDQVADLLTKSLPRPTFE 1481
Query: 181 FLLGKLGI 188
LL LG+
Sbjct: 1482 RLLSTLGV 1489
>gb|AAR24647.1| At2g23330 [Arabidopsis thaliana] gi|22655202|gb|AAM98191.1| unknown
protein [Arabidopsis thaliana]
Length = 776
Score = 242 bits (618), Expect = 4e-63
Identities = 118/188 (62%), Positives = 143/188 (75%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M P HWEAALR+VR+LKG+P QGIF S S L ++ +CDSD+ +CPLTRRS++ ++V
Sbjct: 582 MQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLIINAYCDSDYNACPLTRRSLSAYVV 641
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
LGDSPISWKTKKQ TVS SSAEAEYR+MA T ELKWLK +L +LGV H PM +HCDS
Sbjct: 642 YLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWLKALLKDLGVHHSSPMKLHCDS 701
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
+AAIHIA NPVFHERTKHIE DCH VR+ VL I ++ T +Q AD+ TK+L +P FE
Sbjct: 702 EAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLITTEHIYTEDQVADLLTKSLPRPTFE 761
Query: 181 FLLGKLGI 188
LL LG+
Sbjct: 762 RLLSTLGV 769
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 236 bits (602), Expect = 3e-61
Identities = 118/195 (60%), Positives = 142/195 (72%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M PR H EAA+R+VR+LKG+PGQGI S DL L +CDSD+ SCPLTRRS++ ++V
Sbjct: 1297 MQAPREAHLEAAMRIVRYLKGSPGQGILLSSNKDLTLEVYCDSDFQSCPLTRRSLSAYVV 1356
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
LG SPISWKTKKQ TVS SSAEAEYR+M+ E+KWL +L LG+ P + CDS
Sbjct: 1357 LLGGSPISWKTKKQDTVSHSSAEAEYRAMSVALKEIKWLNKLLKELGITLAAPTRLFCDS 1416
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
+AAI IA NPVFHERTKHIE DCH VR+ V I +V T+ Q ADIFTKALG+ QF
Sbjct: 1417 KAAISIAANPVFHERTKHIERDCHSVRDAVRDGIITTHHVRTSEQLADIFTKALGRNQFI 1476
Query: 181 FLLGKLGIRNLHAPT 195
+L+ KLGI+NLH PT
Sbjct: 1477 YLMSKLGIQNLHTPT 1491
>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301695|pir||D84481 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1413
Score = 233 bits (595), Expect = 2e-60
Identities = 116/192 (60%), Positives = 141/192 (73%)
Query: 4 PRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLG 63
PR H EAA+R+VR+LKG+PGQGI + DL L +CDSD+ SCPLTRRS++ ++V LG
Sbjct: 1222 PREAHLEAAMRIVRYLKGSPGQGILLSANKDLTLEVYCDSDFQSCPLTRRSLSAYVVLLG 1281
Query: 64 DSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAA 123
SPISWKTKKQ TVS SSAEAEYR+M+ E+KWL +L LG+ P + CDS+AA
Sbjct: 1282 GSPISWKTKKQDTVSHSSAEAEYRAMSVALKEIKWLNKLLKELGITLAAPTRLFCDSKAA 1341
Query: 124 IHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLL 183
I IA NPVFHERTKHIE DCH VR+ V I +V T+ Q ADIFTKALG+ QF +L+
Sbjct: 1342 ISIAANPVFHERTKHIERDCHSVRDAVRDGIITTHHVRTSEQLADIFTKALGRNQFIYLM 1401
Query: 184 GKLGIRNLHAPT 195
KLGI+NLH PT
Sbjct: 1402 SKLGIQNLHTPT 1413
>pir||E96608 probable retroelement polyprotein F25P12.89 [imported] - Arabidopsis
thaliana gi|9954746|gb|AAG09097.1| Putative retroelement
polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 226 bits (576), Expect = 3e-58
Identities = 106/194 (54%), Positives = 139/194 (71%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M+ P+ HWEAALRVVR+LK +PGQGI + + L L WCDSD+ +CP + RS+TGW +
Sbjct: 1292 MHNPKPAHWEAALRVVRYLKSSPGQGILLRANTPLVLSAWCDSDFGACPHSDRSLTGWFI 1351
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
QLG SP+SWKT+KQ+ VSRSSAEAEYR+MA T E+ W++ +L LG+ P +H DS
Sbjct: 1352 QLGGSPLSWKTQKQNVVSRSSAEAEYRAMAETVSEIIWIRELLPALGIPCTAPTTLHSDS 1411
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
+AI +A NPV+H RTKH+ D HF+R+E++ I +VST +Q ADI TKALG+ +F
Sbjct: 1412 LSAISLAANPVYHARTKHVRRDVHFIRDELVNGTIATKHVSTTSQLADILTKALGRKEFA 1471
Query: 181 FLLGKLGIRNLHAP 194
L KLGI NLH P
Sbjct: 1472 DFLAKLGICNLHIP 1485
>gb|AAC98469.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411253|pir||A84480 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1102
Score = 221 bits (562), Expect = 1e-56
Identities = 111/195 (56%), Positives = 136/195 (68%), Gaps = 4/195 (2%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M P HW A LR+VR+LKG+P QGI S L L +CDSD+ CP TRRS++ +++
Sbjct: 912 MQTPLEAHWHATLRLVRYLKGSPDQGILLRSDRALSLTAYCDSDYNPCPRTRRSLSAYVL 971
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
LGD+PISWKTKKQ TVS SSAEAEYR+MA T E+KWLK +++ LGV H +P+++ CDS
Sbjct: 972 YLGDTPISWKTKKQDTVSSSSAEAEYRAMAYTLKEIKWLKALMTTLGVDHTQPILLFCDS 1031
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
QAAIHIA NPVFHERTKHIE DCH VR+ V I ++ST D+ TKAL +P FE
Sbjct: 1032 QAAIHIAANPVFHERTKHIEKDCHQVRDAVTDKVISTPHIST----TDLLTKALPRPTFE 1087
Query: 181 FLLGKLGIRNLHAPT 195
LL LG N PT
Sbjct: 1088 RLLSTLGTCNYDLPT 1102
>dbj|BAD99221.1| polypepetide with reverse transcriptase and RNaseH domains [Petunia
x hybrida]
Length = 389
Score = 216 bits (549), Expect = 4e-55
Identities = 100/189 (52%), Positives = 136/189 (71%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M PR+ H EAA +R+++ NPG GIF S+ +L G+CD+DWASCP +RRS++G+ +
Sbjct: 192 MQSPRSGHLEAAYHTLRYIRNNPGLGIFLSSEQSFQLTGFCDADWASCPDSRRSISGFFL 251
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
+G P+SWK+KKQ VS SSAEAEYRS+ E+ W+ +L +L V P+ +HCD+
Sbjct: 252 TMGGCPLSWKSKKQQVVSLSSAEAEYRSLRRLVAEIAWIVRLLHDLSVDFSLPVSVHCDN 311
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
Q+AIHIAKNPVFHERTKHIE+DCHFVR ++L I +V +++Q ADIFTK+L P
Sbjct: 312 QSAIHIAKNPVFHERTKHIELDCHFVREKLLDGLISLSFVPSSSQIADIFTKSLTGPLHR 371
Query: 181 FLLGKLGIR 189
L+GKLG+R
Sbjct: 372 SLMGKLGVR 380
>gb|AAU89728.1| putative retroelement pol polyprotein-like [Solanum tuberosum]
Length = 1476
Score = 213 bits (541), Expect = 3e-54
Identities = 96/194 (49%), Positives = 137/194 (70%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M+ P+ H EAA+RVV+++K PG G++ ++ L +CD+DW SC TR+S+TG+++
Sbjct: 1264 MHAPKVSHMEAAIRVVKYVKQAPGLGLYMAVQTADTLQAYCDADWGSCINTRKSITGYMI 1323
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
Q G + +SWK+KKQ T+SRSSAEAEYRS+A+T EL WL G+ L + P+ ++CDS
Sbjct: 1324 QFGSALLSWKSKKQPTISRSSAEAEYRSLASTVAELVWLTGLFKELDMPLSLPVSLYCDS 1383
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
+AAI IA NPVFHERTKHI++DCHF+R +V ++ Y+ T QPADI TK L Q
Sbjct: 1384 KAAIQIAANPVFHERTKHIDIDCHFIREKVQAGLVMIHYLPTQEQPADILTKGLSSAQHS 1443
Query: 181 FLLGKLGIRNLHAP 194
+L+ KLG++N+ P
Sbjct: 1444 YLVSKLGLKNIFIP 1457
>gb|AAT40550.1| putative receptor kinase [Solanum demissum]
Length = 1358
Score = 207 bits (526), Expect = 2e-52
Identities = 95/194 (48%), Positives = 135/194 (68%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M P HWEA +R++R++K PG+G+ F + + G+ D+DWA P RRS +G+ V
Sbjct: 1164 MTSPCDSHWEAVVRILRYIKSAPGKGLLFEDQGHEHIIGYTDADWAGSPSDRRSTSGYCV 1223
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
+G + +SWK+KKQ+ V+RSSAE+EYR+MA TCEL W+K +L L M + CD+
Sbjct: 1224 LVGGNLVSWKSKKQNVVARSSAESEYRAMATATCELVWIKQLLGELKFGKVDKMELVCDN 1283
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
QAA+HIA NPVFHERTKHIE+DCHFVR ++L +I+ +V + +Q ADIFTK+L P+
Sbjct: 1284 QAALHIASNPVFHERTKHIEIDCHFVREKILSGDIVTKFVKSNDQLADIFTKSLTCPRIN 1343
Query: 181 FLLGKLGIRNLHAP 194
++ KLG +L+AP
Sbjct: 1344 YICNKLGTYDLYAP 1357
>gb|AAU89730.1| putative polyprotein [Solanum tuberosum]
Length = 1280
Score = 205 bits (522), Expect = 5e-52
Identities = 102/188 (54%), Positives = 130/188 (68%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M +P H+ AALRV+R+LK +PGQGI S L +CD+DWASC TRRSV+G+ +
Sbjct: 1042 MQRPTVSHFSAALRVLRYLKSDPGQGILLSSYPSFDLLDFCDADWASCKDTRRSVSGFFI 1101
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
LG +PISWK+KKQ +VS SSAEAE RSM T EL WL +L +L V D P+ +H DS
Sbjct: 1102 TLGGAPISWKSKKQASVSLSSAEAEXRSMRRVTAELTWLVRLLEDLSVPPDLPVPVHSDS 1161
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
+AAIHIA+NPVFHERTKH+++DCHFVR + L I +V + Q AD+FTK L +
Sbjct: 1162 KAAIHIARNPVFHERTKHVDLDCHFVRQQFLSGLISLSFVPSEGQLADLFTKPLNGGSHQ 1221
Query: 181 FLLGKLGI 188
LL KLG+
Sbjct: 1222 RLLDKLGV 1229
>gb|AAC62795.1| contains similarity to retroviral aspartyl proteases (Pfam: rvp.hmm,
score: 11.80) [Arabidopsis thaliana]
gi|7487550|pir||T01956 hypothetical protein T2L5.9 -
Arabidopsis thaliana
Length = 1244
Score = 199 bits (507), Expect = 3e-50
Identities = 97/190 (51%), Positives = 130/190 (68%)
Query: 4 PRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLG 63
PRT H +V++++KG GQG+F+ S DL L G+ DSDW +CP TRRS TG + LG
Sbjct: 1053 PRTSHLTTVYKVLQYIKGTVGQGLFYSSDPDLTLKGFADSDWGTCPDTRRSTTGLTMFLG 1112
Query: 64 DSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAA 123
S I+W++KKQ TVSRSSAEAEYR++A +CE+ WL +L +L ++ I+ DS AA
Sbjct: 1113 SSLITWRSKKQPTVSRSSAEAEYRALALASCEMVWLASLLLDLKIITGSVPIVFSDSTAA 1172
Query: 124 IHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLL 183
I+IA NPVFHERTKHIE+DCH VR + K I ++V T +Q ADI TK L QF +L+
Sbjct: 1173 IYIATNPVFHERTKHIEIDCHLVRERLDKGLIRMLHVRTEDQVADILTKPLFPHQFSYLM 1232
Query: 184 GKLGIRNLHA 193
K+ + N+ A
Sbjct: 1233 SKMSLHNIFA 1242
>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301674|pir||D84639 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1156
Score = 198 bits (503), Expect = 8e-50
Identities = 103/195 (52%), Positives = 129/195 (65%), Gaps = 21/195 (10%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M PR H AA+R+VRFLKG+PGQGI + ++L+L +CDSD+ +CP TRRS++ ++V
Sbjct: 954 MQTPREAHLAAAMRIVRFLKGSPGQGILLNADTELQLDVYCDSDFQTCPKTRRSLSAYVV 1013
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
LG SPISWKTKKQ TVS SSAEAEYR+M+ E+KWL+ +L L
Sbjct: 1014 LLGGSPISWKTKKQDTVSHSSAEAEYRAMSVALREIKWLRKLLKELA------------- 1060
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
NPVFHERTKHIE DCH VR+ V I +V T Q ADIFTKALG+ QF
Sbjct: 1061 --------NPVFHERTKHIESDCHSVRDAVRDGIITTHHVRTNEQLADIFTKALGRSQFL 1112
Query: 181 FLLGKLGIRNLHAPT 195
+L+ KLGI++LH PT
Sbjct: 1113 YLMSKLGIQDLHTPT 1127
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301694|pir||E84535 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1454
Score = 196 bits (499), Expect = 2e-49
Identities = 101/188 (53%), Positives = 132/188 (69%), Gaps = 1/188 (0%)
Query: 4 PRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLG 63
PRT H AA RV++++KG GQG+F+ + SDL L G+ DSDWASC +RRS T + + +G
Sbjct: 1263 PRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVG 1322
Query: 64 DSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAA 123
DS ISW++KKQHTVSRSSAEAEYR++A TCE+ WL +L +L P I++ DS AA
Sbjct: 1323 DSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLVSLQASPPVP-ILYSDSTAA 1381
Query: 124 IHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLL 183
I+IA NPVFHERTKHI++DCH VR + + ++V T +Q ADI TK L QFE L
Sbjct: 1382 IYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTEDQVADILTKPLFPYQFEHLK 1441
Query: 184 GKLGIRNL 191
K+ I N+
Sbjct: 1442 SKMSILNI 1449
>gb|AAD41979.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301676|pir||B84534 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1264
Score = 196 bits (497), Expect = 4e-49
Identities = 101/188 (53%), Positives = 132/188 (69%), Gaps = 1/188 (0%)
Query: 4 PRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLG 63
P T H +AA RV++++KG GQG+F+ + SDL L G+ DSDWASCP +R S TG+ + +G
Sbjct: 1073 PTTAHLQAAHRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCPDSRHSTTGFTMFVG 1132
Query: 64 DSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAA 123
DS IS ++KKQH VSRSSAEAEYR++A TCEL WL +L++L P I+ DS AA
Sbjct: 1133 DSLISLRSKKQHVVSRSSAEAEYRALALATCELVWLHTLLASLTAATTIP-ILFSDSTAA 1191
Query: 124 IHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLL 183
I+IA NPVFHERTKHIE+DCH VR ++ + ++V T +Q ADI TK L QFE L
Sbjct: 1192 IYIAINPVFHERTKHIEIDCHTVREKIDDGELKLLHVRTEDQVADIMTKPLFPNQFEHLK 1251
Query: 184 GKLGIRNL 191
K+ I N+
Sbjct: 1252 SKMSILNI 1259
>emb|CAA72990.1| unnamed protein product [Brassica oleracea] gi|7488559|pir||T14518
hypothetical protein 2 - wild cabbage transposon Melmoth
Length = 253
Score = 196 bits (497), Expect = 4e-49
Identities = 98/188 (52%), Positives = 132/188 (70%)
Query: 4 PRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLG 63
PRT H A +V++++KG GQG+F+ + SDL L G+ D+DWA+C +RRS TG+ + +G
Sbjct: 62 PRTSHLGAVYKVLQYIKGTVGQGLFYSAHSDLTLKGFADADWAACVDSRRSTTGFTMFVG 121
Query: 64 DSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAA 123
DS ISW++KKQ TVSRSSAEAEYR++A +CE+ WL +L L V ++ DS AA
Sbjct: 122 DSLISWRSKKQPTVSRSSAEAEYRALALASCEMMWLCILLRELHVASSSVPVLFSDSTAA 181
Query: 124 IHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLL 183
I+IA NPVFHERTKHIE+DCH VR ++ K + ++V T +Q ADI TK L QFE L
Sbjct: 182 IYIATNPVFHERTKHIELDCHTVREKIDKGLLKTLHVRTEDQVADILTKPLFPYQFEHLK 241
Query: 184 GKLGIRNL 191
K+ IRN+
Sbjct: 242 SKMCIRNI 249
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.135 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 343,893,825
Number of Sequences: 2540612
Number of extensions: 13181882
Number of successful extensions: 24737
Number of sequences better than 10.0: 823
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 23421
Number of HSP's gapped (non-prelim): 900
length of query: 195
length of database: 863,360,394
effective HSP length: 121
effective length of query: 74
effective length of database: 555,946,342
effective search space: 41140029308
effective search space used: 41140029308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)
Medicago: description of AC126781.9