BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126018.19 - phase: 0
(686 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB33195.1| RNA polymerase beta' subunit-1 [Lotus corniculat... 1298 0.0
gb|AAL07335.1| rpoC1 [Glycine max] gi|41018057|sp|Q8HVY4|RPOC1_S... 1269 0.0
emb|CAJ00749.1| RNA polymerase beta chain [Cucumis sativus] 1268 0.0
ref|YP_086957.1| RNA polymerase beta I subunit [Panax ginseng] g... 1266 0.0
emb|CAC88035.1| RNA polymerase beta I subunit [Atropa belladonna... 1256 0.0
sp|Q8S8Y0|RPOC1_ATRBE DNA-directed RNA polymerase beta' chain (P... 1256 0.0
emb|CAA77411.1| RNA polymerase beta' subunit [Nicotiana tabacum]... 1251 0.0
dbj|BAA84376.1| RNA polymerase beta' subunit-1 [Arabidopsis thal... 1243 0.0
emb|CAB88716.1| RNA polymerase beta' subunit [Spinacia oleracea]... 1239 0.0
gb|AAV74362.1| RpoC1 [Acorus gramineus] 1238 0.0
emb|CAF28584.1| RNA polymerase beta' subunit-1 [Nymphaea alba] g... 1231 0.0
sp|P12116|RPOC1_TOBAC DNA-directed RNA polymerase beta' chain (P... 1229 0.0
dbj|BAD93458.1| RNA polymerase beta chain [Silene latifolia] 1229 0.0
emb|CAB48413.1| RNA polymerase A beta prime subunit [Sinapis alb... 1227 0.0
emb|CAD28712.1| RNA polymerase beta' subunit-1 [Calycanthus flor... 1224 0.0
emb|CAD45098.1| RNA polymerase beta' subunit-1 [Amborella tricho... 1199 0.0
emb|CAB67152.1| RNA polymerase beta' subunit [Oenothera elata su... 1194 0.0
gb|AAX58143.1| RNA polymerase beta I subunit [Lactuca sativa] 1139 0.0
gb|AAT44686.1| RNA polymerase beta' chain [Saccharum hybrid cult... 1081 0.0
emb|CAA60277.1| RNA polymerase beta' subunit 1 [Zea mays] gi|124... 1076 0.0
>dbj|BAB33195.1| RNA polymerase beta' subunit-1 [Lotus corniculatus var. japonicus]
gi|13518437|ref|NP_084797.1| RNA polymerase beta' chain
[Lotus corniculatus var. japonicus]
gi|23822110|sp|Q9BBS8|RPOC1_LOTJA DNA-directed RNA
polymerase beta' chain (PEP) (Plastid-encoded RNA
polymerase beta' subunit) (RNA polymerase beta' subunit)
Length = 682
Score = 1298 bits (3360), Expect = 0.0
Identities = 636/686 (92%), Positives = 657/686 (95%), Gaps = 4/686 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MIDQYKHQ LRIGSVSP+QISAWA KILPNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDQYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGIC CGNYRVIGDKKD+PKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICTCGNYRVIGDKKDEPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRG FEYEIQSWKYSIPLFFA
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGLFEYEIQSWKYSIPLFFA 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
T GFDTFRNREISSGAGAIREQLVDLDLRI++DSSLVEWKELGEE S NENEWEDRK
Sbjct: 181 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERST--HNENEWEDRK 238
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
VGRRKNFLVRRMEL KHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 239 VGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 298
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPM+DGHNKVYKSF
Sbjct: 299 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMKDGHNKVYKSF 358
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIR LIR
Sbjct: 359 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRSLIR 418
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
KHFASNIGVAKSKIREKEPIVWEILQEVMRGHP+LLNRAPTLHRLGIQAFQPILVEGRAI
Sbjct: 419 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPILLNRAPTLHRLGIQAFQPILVEGRAI 478
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMA+HVPLSLEAQAEARLLMFSHTNLLSPAIGDPI+VPTQDML
Sbjct: 479 CLHPLVCKGFNADFDGDQMAIHVPLSLEAQAEARLLMFSHTNLLSPAIGDPIAVPTQDML 538
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLY+LTSGNRRGICANRYN N +NSKNEKI + KYMKKKEPFF NSYDAIGA+RQK
Sbjct: 539 IGLYILTSGNRRGICANRYNRSNWKNSKNEKI--RDKKYMKKKEPFFSNSYDAIGAFRQK 596
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
+IN DSPFWLRWR+D+CIMSSRE PIEVHYES GTY++IY HYLVIRSIKK+I CIYIRT
Sbjct: 597 KINFDSPFWLRWRLDKCIMSSREAPIEVHYESLGTYHDIYEHYLVIRSIKKQICCIYIRT 656
Query: 661 TVGHISFYREIEEAIQGFSRAYSYGI 686
T+GHISFYREIEEAIQGF R YSYGI
Sbjct: 657 TIGHISFYREIEEAIQGFCRGYSYGI 682
>gb|AAL07335.1| rpoC1 [Glycine max] gi|41018057|sp|Q8HVY4|RPOC1_SOYBN DNA-directed
RNA polymerase beta' chain (PEP) (Plastid-encoded RNA
polymerase beta' subunit) (RNA polymerase beta' subunit)
Length = 682
Score = 1269 bits (3284), Expect = 0.0
Identities = 625/686 (91%), Positives = 645/686 (93%), Gaps = 7/686 (1%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MIDQYKHQ LRIGSVSP+QISAWAKKILPNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDQYKHQQLRIGSVSPQQISAWAKKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVI DKKD PKFCEQCGVEF+DSR+RRYQMGYIKLAC VTHVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIRDKKDDPKFCEQCGVEFIDSRIRRYQMGYIKLACLVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDK LKELE LVYCDFSFARP+ KKPTFLRLRG FEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANLLDKSLKELESLVYCDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFT 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GAGAIREQL DLDLR I+D S EWKELGEEGS NE WEDRK
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRTIIDYSFAEWKELGEEGSTGNE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
VGRRKNFLVRR+EL KHF+RTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 237 VGRRKNFLVRRIELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 297 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR
Sbjct: 357 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
KHFASNIG+AKSKIREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAI
Sbjct: 417 KHFASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML
Sbjct: 477 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNC---RNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAY 597
IGLY+LTSGNRRGI +NRYNP NC RN KNE+I +NN KY KKKEPFFCNSYDAIGAY
Sbjct: 537 IGLYILTSGNRRGIYSNRYNPRNCGNFRNLKNERIRDNNYKYTKKKEPFFCNSYDAIGAY 596
Query: 598 RQKRINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIY 657
+QKRIN DSP WLRWR+DQ I+SSREVPIEVHYES GTY+EIY HYLV+RS KKEIR IY
Sbjct: 597 QQKRINFDSPLWLRWRLDQRIISSREVPIEVHYESLGTYHEIYEHYLVVRSTKKEIRSIY 656
Query: 658 IRTTVGHISFYREIEEAIQGFSRAYS 683
IRT VGHISFYREIEEAIQGF RAYS
Sbjct: 657 IRTNVGHISFYREIEEAIQGFCRAYS 682
>emb|CAJ00749.1| RNA polymerase beta chain [Cucumis sativus]
Length = 687
Score = 1268 bits (3282), Expect = 0.0
Identities = 623/685 (90%), Positives = 647/685 (93%), Gaps = 6/685 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIG VSP+QISAWA K LPNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 8 MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 67
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGDKK+ KFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 68 FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 127
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEGLVYCDFSFARP+ KKPTFLRLRGSFEYEIQSWKYSIPLFF
Sbjct: 128 RLPSYIANLLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 187
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GAGAIREQL DLDLR+I+D SLVEWKELGEEG A NE WEDRK
Sbjct: 188 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNE----WEDRK 243
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
VGRRK+FLVRRMEL KHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 244 VGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 303
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 304 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 363
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR
Sbjct: 364 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 423
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+HFASNIGVAKSKIREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAI
Sbjct: 424 QHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 483
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLS EAQAEARLLMFSH NLLS AIGDPISVPTQDML
Sbjct: 484 CLHPLVCKGFNADFDGDQMAVHVPLSWEAQAEARLLMFSHMNLLSSAIGDPISVPTQDML 543
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLYVLTSGNRRGICANRYNP N +N KNEKI NNN KY KEPFFCNSYDAIGAYRQK
Sbjct: 544 IGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKY--TKEPFFCNSYDAIGAYRQK 601
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RINLDSP WLRWR+DQ +++SRE PIEVHYES GT++EIYG+YL+++SIKKEI CIYIRT
Sbjct: 602 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 661
Query: 661 TVGHISFYREIEEAIQGFSRAYSYG 685
TVGHIS YREIEEAIQGF RA SYG
Sbjct: 662 TVGHISLYREIEEAIQGFCRACSYG 686
>ref|YP_086957.1| RNA polymerase beta I subunit [Panax ginseng]
gi|51235304|gb|AAT98500.1| RNA polymerase beta I subunit
[Panax ginseng]
Length = 689
Score = 1266 bits (3276), Expect = 0.0
Identities = 618/685 (90%), Positives = 647/685 (94%), Gaps = 4/685 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIGSVSP+QIS WA KILPNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 8 MIDRYKHQQLRIGSVSPQQISTWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 67
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIG++K+ PKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 68 FGPIKSGICACGNYRVIGNEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 127
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEGLVYCDFSFARP+ KKPTFLRLRGSFEYEIQSWKYSIPLFF
Sbjct: 128 RLPSYIANLLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 187
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GAGAIREQL DLDLRII+DSSLVEWKELGE+G NE WEDRK
Sbjct: 188 TQGFDTFRNREISTGAGAIREQLADLDLRIIIDSSLVEWKELGEDGPTGNE----WEDRK 243
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
VGRRK+FLVRRMEL KHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 244 VGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 303
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 304 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 363
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 364 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 423
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIGVAKSKIREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAI
Sbjct: 424 QHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAI 483
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLSPAIGDPISVPTQDML
Sbjct: 484 CLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML 543
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLYVLTSGNRRGIC NRYNP N RN +NE+I +NN KY KKKEPFFCNSYDAIGAYRQK
Sbjct: 544 IGLYVLTSGNRRGICVNRYNPCNRRNYQNERIYDNNYKYTKKKEPFFCNSYDAIGAYRQK 603
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RINLDSP WLRWR+DQ ++S++E P+EVHYES GTYYEIYG YL++RSIKKEI IYIRT
Sbjct: 604 RINLDSPLWLRWRLDQRVISAKEAPLEVHYESLGTYYEIYGQYLIVRSIKKEILYIYIRT 663
Query: 661 TVGHISFYREIEEAIQGFSRAYSYG 685
TVGHIS YREIEEAIQGF +A SYG
Sbjct: 664 TVGHISLYREIEEAIQGFCQACSYG 688
>emb|CAC88035.1| RNA polymerase beta I subunit [Atropa belladonna]
gi|28261708|ref|NP_783223.1| RNA polymerase beta' chain
[Atropa belladonna]
Length = 688
Score = 1256 bits (3250), Expect = 0.0
Identities = 614/685 (89%), Positives = 646/685 (93%), Gaps = 5/685 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIGSVSP+QISAWA KILPNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 8 MIDRYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 67
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K+ PKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 68 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 127
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEGLVYCDFSFARP+ KKPTFLRLRG FEYEIQSWKYSIPLFF
Sbjct: 128 RLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFT 187
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GAGAIREQL DLDLRII+++SLVEW+ELGEEG NE WEDRK
Sbjct: 188 TQGFDTFRNREISTGAGAIREQLADLDLRIIIENSLVEWEELGEEGHTGNE----WEDRK 243
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
VGRRK+FLVRR+EL KHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 244 VGRRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 303
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 304 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 363
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 364 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 423
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIGVAKSKIREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAI
Sbjct: 424 QHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAI 483
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSH NLLSPAIGDPISVPTQDML
Sbjct: 484 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGDPISVPTQDML 543
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLYVLTSGNRRGIC NRYNP N RN +N+K S +NS Y KEPFF NSYDAIGAYRQK
Sbjct: 544 IGLYVLTSGNRRGICVNRYNPCNRRNYQNQKRS-DNSYYKYTKEPFFSNSYDAIGAYRQK 602
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RINLDSP WLRWR+DQ +++SRE PIEVHYES GT+YEIYGHYL++RS+KK+I IYIRT
Sbjct: 603 RINLDSPLWLRWRLDQRVIASRETPIEVHYESLGTFYEIYGHYLIVRSLKKQILFIYIRT 662
Query: 661 TVGHISFYREIEEAIQGFSRAYSYG 685
TVGHI+ YREIEEAIQGFSRAYSYG
Sbjct: 663 TVGHIALYREIEEAIQGFSRAYSYG 687
>sp|Q8S8Y0|RPOC1_ATRBE DNA-directed RNA polymerase beta' chain (PEP) (Plastid-encoded RNA
polymerase beta' subunit) (RNA polymerase beta' subunit)
Length = 681
Score = 1256 bits (3250), Expect = 0.0
Identities = 614/685 (89%), Positives = 646/685 (93%), Gaps = 5/685 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIGSVSP+QISAWA KILPNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K+ PKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEGLVYCDFSFARP+ KKPTFLRLRG FEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFT 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GAGAIREQL DLDLRII+++SLVEW+ELGEEG NE WEDRK
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIIIENSLVEWEELGEEGHTGNE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
VGRRK+FLVRR+EL KHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 237 VGRRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 297 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIGVAKSKIREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAI
Sbjct: 417 QHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSH NLLSPAIGDPISVPTQDML
Sbjct: 477 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGDPISVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLYVLTSGNRRGIC NRYNP N RN +N+K S +NS Y KEPFF NSYDAIGAYRQK
Sbjct: 537 IGLYVLTSGNRRGICVNRYNPCNRRNYQNQKRS-DNSYYKYTKEPFFSNSYDAIGAYRQK 595
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RINLDSP WLRWR+DQ +++SRE PIEVHYES GT+YEIYGHYL++RS+KK+I IYIRT
Sbjct: 596 RINLDSPLWLRWRLDQRVIASRETPIEVHYESLGTFYEIYGHYLIVRSLKKQILFIYIRT 655
Query: 661 TVGHISFYREIEEAIQGFSRAYSYG 685
TVGHI+ YREIEEAIQGFSRAYSYG
Sbjct: 656 TVGHIALYREIEEAIQGFSRAYSYG 680
>emb|CAA77411.1| RNA polymerase beta' subunit [Nicotiana tabacum]
gi|11465945|ref|NP_054487.1| RNA polymerase beta' chain
[Nicotiana tabacum]
Length = 688
Score = 1251 bits (3237), Expect = 0.0
Identities = 612/685 (89%), Positives = 644/685 (93%), Gaps = 5/685 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIGSVSP+QISAWA KILPNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 8 MIDRYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 67
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K+ PKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 68 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 127
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEGLVYCDFSFARP+ KKPTFLRLRG FEYEIQSWKYSIPLFF
Sbjct: 128 RLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFT 187
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GAGAIREQL DLDLRII+++SLVEW+ELGEEG NE WEDRK
Sbjct: 188 TQGFDTFRNREISTGAGAIREQLADLDLRIIIENSLVEWEELGEEGHTGNE----WEDRK 243
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
VGRRK+FLVRR+EL KHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 244 VGRRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 303
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 304 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 363
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 364 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 423
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIGVAKSKIREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAI
Sbjct: 424 QHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAI 483
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSH NLLSPAIGDPISVPTQDML
Sbjct: 484 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGDPISVPTQDML 543
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLYVLTSGN RGIC NRYNP N RN +N+K S +NS Y KEPFF NSYDAIGAYRQK
Sbjct: 544 IGLYVLTSGNHRGICVNRYNPCNRRNYQNQKRS-DNSHYKYTKEPFFSNSYDAIGAYRQK 602
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RINLDSP WLRWR+DQ +++SRE PIEVHYES GT+YEIYGHYL++RS+KK+I IYIRT
Sbjct: 603 RINLDSPLWLRWRLDQRVIASRETPIEVHYESLGTFYEIYGHYLIVRSLKKQILFIYIRT 662
Query: 661 TVGHISFYREIEEAIQGFSRAYSYG 685
TVGHI+ YREIEEAIQGFSRAYS G
Sbjct: 663 TVGHIALYREIEEAIQGFSRAYSSG 687
>dbj|BAA84376.1| RNA polymerase beta' subunit-1 [Arabidopsis thaliana]
gi|7525024|ref|NP_051050.1| RNA polymerase beta' chain
[Arabidopsis thaliana] gi|6685904|sp|P56763|RPOC1_ARATH
DNA-directed RNA polymerase beta' chain (PEP)
(Plastid-encoded RNA polymerase beta' subunit) (RNA
polymerase beta' subunit)
Length = 680
Score = 1243 bits (3215), Expect = 0.0
Identities = 605/684 (88%), Positives = 642/684 (93%), Gaps = 6/684 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIG VSP+QISAWA KI+PNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K+ PKFCEQCGVEFVDSR+RRYQMGYIKL CPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEGLVYCDFSFARP+ KKPTFLRLRGSFEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFD FRNREIS+GAGAIREQL DLDLRII+++SLVEWK+LGEEG NE WEDRK
Sbjct: 181 TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
+ RRK+FLVRRMEL KHFIRTNIEPEWMVL LLPVLPPELRPIIQI+GGKLMSSDINELY
Sbjct: 237 IVRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 297 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIGVAKS+IREK+PIVWEILQEVM+GHPVLLNRAPTLHRLGIQ+FQPILVEGR I
Sbjct: 417 QHLASNIGVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLSPAIGDPISVPTQDML
Sbjct: 477 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLYVLTSG RRGICANRYNP N +N +NE+I N KY KEPFFCNSYDAIGAYRQK
Sbjct: 537 IGLYVLTSGTRRGICANRYNPCNRKNYQNERIYETNYKY--TKEPFFCNSYDAIGAYRQK 594
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
+INLDSP WLRW++DQ +++SREVPIEVHYESFG Y+EIY HYL++RS+KKE CIYIRT
Sbjct: 595 KINLDSPLWLRWQLDQRVIASREVPIEVHYESFGNYHEIYAHYLIVRSVKKENFCIYIRT 654
Query: 661 TVGHISFYREIEEAIQGFSRAYSY 684
TVGHISFYREIEEAIQGFS+A SY
Sbjct: 655 TVGHISFYREIEEAIQGFSQACSY 678
>emb|CAB88716.1| RNA polymerase beta' subunit [Spinacia oleracea]
gi|11497515|ref|NP_054923.1| RNA polymerase beta' chain
[Spinacia oleracea] gi|81504|pir||B29959 DNA-directed
RNA polymerase (EC 2.7.7.6) beta' chain - spinach
chloroplast gi|133438|sp|P11705|RPOC1_SPIOL DNA-directed
RNA polymerase beta' chain (PEP) (Plastid-encoded RNA
polymerase beta' subunit) (RNA polymerase beta' subunit)
Length = 677
Score = 1239 bits (3207), Expect = 0.0
Identities = 608/683 (89%), Positives = 639/683 (93%), Gaps = 6/683 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MIDQYKHQ LRIGSVSP+QISAWA KILPNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDQYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K+ PKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+ LDKPLKELEGLVYCDFSFARP+ KKPTFLRLRG FEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANFLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFT 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GAGAIREQL DLDLR I+D S EWKELGEEGS NE WEDRK
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRTIIDYSFAEWKELGEEGSTGNE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
VGRRK+FLVRRMELVKHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 237 VGRRKDFLVRRMELVKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL DLL+TSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 297 RRVIYRNNTLTDLLSTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIGVAK KIREKEPIVW+ILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAI
Sbjct: 417 QHLASNIGVAKRKIREKEPIVWKILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLSPAIGDPISVPTQDML
Sbjct: 477 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLY+LTSGNRRGICANRYNP+N + +NE+I + N K M KEPFFCN YDAIGAYRQK
Sbjct: 537 IGLYILTSGNRRGICANRYNPWNHKTYQNERIDDTNYKSM--KEPFFCNFYDAIGAYRQK 594
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RI+LDSP WLRW++DQ I++S+E PIEVHYES GTY+EIY HYL+IRS+KKEI IYIRT
Sbjct: 595 RIHLDSPLWLRWQLDQRIIASKEAPIEVHYESLGTYHEIYAHYLIIRSVKKEIIDIYIRT 654
Query: 661 TVGHISFYREIEEAIQGFSRAYS 683
TVGHIS YREIEEAIQGF +A S
Sbjct: 655 TVGHISLYREIEEAIQGFYQACS 677
>gb|AAV74362.1| RpoC1 [Acorus gramineus]
Length = 689
Score = 1238 bits (3203), Expect = 0.0
Identities = 599/685 (87%), Positives = 640/685 (92%), Gaps = 4/685 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ L+IGSVSP+QISAWA KILPNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 8 MIDRYKHQQLQIGSVSPQQISAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 67
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIG +K+ PKFCEQCGVEF+DSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 68 FGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFIDSRIRRYQMGYIKLACPVTHVWYLK 127
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEGLVYCDFSFARP+ KKPTFLRLRG FEYEIQSWKYSIPLFF
Sbjct: 128 RLPSYIANLLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFT 187
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GAGAIREQL DLDLRI++D+S VEWKELG+EGS NE WEDRK
Sbjct: 188 TQGFDTFRNREISTGAGAIREQLADLDLRIVIDNSSVEWKELGDEGSTGNE----WEDRK 243
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
+GRRK+FLVRRMEL KHFIRTN+EPE MVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 244 IGRRKDFLVRRMELAKHFIRTNVEPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 303
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL DLL TSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 304 RRVIYRNNTLTDLLKTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 363
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 364 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 423
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIG+AKSKIREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAI
Sbjct: 424 QHLASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAI 483
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLSPAIGDPISVPTQDML
Sbjct: 484 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML 543
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLYVLT GN RGI NRYNP N RN +N+ + NNN K+ K+K+P+F +SYDA+GAY+QK
Sbjct: 544 IGLYVLTMGNHRGIFVNRYNPCNRRNYQNKTVDNNNYKHTKEKKPYFFSSYDALGAYQQK 603
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RINL P WLRWR+DQ ++ SREVPIEV YES GTY EIYGHYL++RS+KKEI CIYIRT
Sbjct: 604 RINLHRPLWLRWRLDQRVIGSREVPIEVQYESLGTYQEIYGHYLIVRSVKKEILCIYIRT 663
Query: 661 TVGHISFYREIEEAIQGFSRAYSYG 685
TVGHISFYREIEE++QGF RAYSYG
Sbjct: 664 TVGHISFYREIEESVQGFCRAYSYG 688
>emb|CAF28584.1| RNA polymerase beta' subunit-1 [Nymphaea alba]
gi|50346773|ref|YP_053146.1| RNA polymerase beta'
subunit-1 [Nymphaea alba]
Length = 691
Score = 1231 bits (3185), Expect = 0.0
Identities = 602/687 (87%), Positives = 642/687 (92%), Gaps = 6/687 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MIDQYKHQ LRIG VSP+QI AWA KILPNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 8 MIDQYKHQQLRIGLVSPKQIRAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 67
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIG +K++PKFCEQCGVE VDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 68 FGPIKSGICACGNYRVIGGEKEEPKFCEQCGVESVDSRIRRYQMGYIKLACPVTHVWYLK 127
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEGLVYCDFSFARP+ KKPTFLRLRGSFEYEIQS KYSIPLFF
Sbjct: 128 RLPSYIANLLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGSFEYEIQSRKYSIPLFFT 187
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GA AIREQL DLDLRII+D SLVEWKELGEEGS N+ WEDRK
Sbjct: 188 TQGFDTFRNREISTGATAIREQLADLDLRIIIDRSLVEWKELGEEGSTGND----WEDRK 243
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
+GRRK+FLVRRMEL KHF+RTN+EPEWMVLSLLPVLPPELRPIIQIDGGK MSSDINELY
Sbjct: 244 IGRRKDFLVRRMELAKHFLRTNVEPEWMVLSLLPVLPPELRPIIQIDGGKSMSSDINELY 303
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 304 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 363
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLH+CGLPREIAIELFQTF+IRGLIR
Sbjct: 364 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIR 423
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIG+AKSKIREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAI
Sbjct: 424 QHLASNIGLAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 483
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML
Sbjct: 484 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 543
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
+GLYVLT GNRRGICANRYNP N RN +NE++ ++N +Y K KEP+FC+SYDA+GAYRQK
Sbjct: 544 MGLYVLTMGNRRGICANRYNPCNPRNHQNERMDHSNYEYRKGKEPYFCSSYDALGAYRQK 603
Query: 601 RINLDSPFWLRWRIDQCIMSS--REVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYI 658
I+L S WLRWR+DQ +++S REVPIEV YES GTY+EIY HY V+RS+KK + CIYI
Sbjct: 604 GIDLYSTLWLRWRLDQRVIASINREVPIEVQYESLGTYHEIYDHYRVVRSVKKGMLCIYI 663
Query: 659 RTTVGHISFYREIEEAIQGFSRAYSYG 685
RTTVGHISFYREIEEAIQGF R+YSYG
Sbjct: 664 RTTVGHISFYREIEEAIQGFCRSYSYG 690
>sp|P12116|RPOC1_TOBAC DNA-directed RNA polymerase beta' chain (PEP) (Plastid-encoded RNA
polymerase beta' subunit) (RNA polymerase beta' subunit)
Length = 680
Score = 1229 bits (3181), Expect = 0.0
Identities = 605/685 (88%), Positives = 638/685 (92%), Gaps = 6/685 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIGSVSP+QISAWA KILPNGEIVGEVTKPYT HYKTNKPEK F +
Sbjct: 1 MIDRYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKMDYFVKN- 59
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K+ PKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 60 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 119
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEGLVYCDFSFARP+ KKPTFLRLRG FEYEIQSWKYSIPLFF
Sbjct: 120 RLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFT 179
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GAGAIREQL DLDLRII+++SLVEW+ELGEEG NE WEDRK
Sbjct: 180 TQGFDTFRNREISTGAGAIREQLADLDLRIIIENSLVEWEELGEEGHTGNE----WEDRK 235
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
VGRRK+FLVRR+EL KHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 236 VGRRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 295
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 296 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 355
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 356 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 415
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIGVAKSKIREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAI
Sbjct: 416 QHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAI 475
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSH NLLSPAIGDPISVPTQDML
Sbjct: 476 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGDPISVPTQDML 535
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLYVLTSGN RGIC NRYNP N RN +N+K S +NS Y KEPFF NSYDAIGAYRQK
Sbjct: 536 IGLYVLTSGNHRGICVNRYNPCNRRNYQNQKRS-DNSHYKYTKEPFFSNSYDAIGAYRQK 594
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RINLDSP WLRWR+DQ +++SRE PIEVHYES GT+YEIYGHYL++RS+KK+I IYIRT
Sbjct: 595 RINLDSPLWLRWRLDQRVIASRETPIEVHYESLGTFYEIYGHYLIVRSLKKQILFIYIRT 654
Query: 661 TVGHISFYREIEEAIQGFSRAYSYG 685
TVGHI+ YREIEEAIQGFSRAYS G
Sbjct: 655 TVGHIALYREIEEAIQGFSRAYSSG 679
>dbj|BAD93458.1| RNA polymerase beta chain [Silene latifolia]
Length = 687
Score = 1229 bits (3180), Expect = 0.0
Identities = 603/688 (87%), Positives = 636/688 (91%), Gaps = 9/688 (1%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MIDQYKHQ LRIG VSP+QISAWA KILPN EIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDQYKHQQLRIGLVSPKQISAWATKILPNREIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVI ++K+ PKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIRNEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCD---FSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPL 177
RLPSYIA+ LDKPLKELEGLVYCD FSFARP+ KKPTFLRLRG FEYEIQSWKYSIPL
Sbjct: 121 RLPSYIANFLDKPLKELEGLVYCDYPNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPL 180
Query: 178 FFATQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWE 237
FF TQGFD FRNREIS+GAGAIREQL DLDLR I+D S EWKELGEE + NEWE
Sbjct: 181 FFTTQGFDAFRNREISTGAGAIREQLADLDLRTIIDYSFAEWKELGEE----DPTGNEWE 236
Query: 238 DRKVGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDIN 297
DRKVGRRK+FLVRRMEL KHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDIN
Sbjct: 237 DRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDIN 296
Query: 298 ELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVY 357
ELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVY
Sbjct: 297 ELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVY 356
Query: 358 KSFSDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRG 417
KSFSD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRG
Sbjct: 357 KSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFIIRG 416
Query: 418 LIRKHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEG 477
LIR+H ASNIGVAKSKIREKEPI+W+ILQEVM+GHP+LLNRAPTLHRLGIQAFQPILVEG
Sbjct: 417 LIRQHLASNIGVAKSKIREKEPIIWKILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEG 476
Query: 478 RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQ 537
RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSH NLLSPAIGDPISVPTQ
Sbjct: 477 RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQ 536
Query: 538 DMLIGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAY 597
DMLIGLY+LTSG RRGICANRYNP+N +N +NE+I + N KYM +EPFFCNSYDAIGAY
Sbjct: 537 DMLIGLYILTSGTRRGICANRYNPWNRKNDQNERIDDKNYKYM--EEPFFCNSYDAIGAY 594
Query: 598 RQKRINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIY 657
QKRINLDSP WLRWR+DQ I++SRE P+EVHYES GTY+EIY HYL+IR+IKKEI +Y
Sbjct: 595 CQKRINLDSPLWLRWRLDQRIIASREAPVEVHYESLGTYHEIYAHYLIIRNIKKEIIFVY 654
Query: 658 IRTTVGHISFYREIEEAIQGFSRAYSYG 685
IRTTVGHI YREIEEAIQGFSRA SYG
Sbjct: 655 IRTTVGHIYLYREIEEAIQGFSRACSYG 682
>emb|CAB48413.1| RNA polymerase A beta prime subunit [Sinapis alba]
gi|12644278|sp|P46819|RPOC1_SINAL DNA-directed RNA
polymerase beta' chain (PEP) (Plastid-encoded RNA
polymerase beta' subunit) (RNA polymerase beta' subunit)
Length = 688
Score = 1227 bits (3174), Expect = 0.0
Identities = 602/692 (86%), Positives = 639/692 (91%), Gaps = 14/692 (2%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIG VSP+QISAWA K +PNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGLVSPQQISAWATKKIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K PKFCEQCGVEFVDSR+RRYQMGYIKL CPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIGDEKGDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCD--------FSFARPVVKKPTFLRLRGSFEYEIQSWK 172
RLPSYIA+LLDKPLKELEGLVYCD FSFARP+ KKPTFLRLRGSFEYEIQSWK
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDVCFDRNPNFSFARPITKKPTFLRLRGSFEYEIQSWK 180
Query: 173 YSIPLFFATQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNEN 232
YSIPLFF TQGF+ FRNREIS+GAGAIREQL DLDLRII+++SLVEWK+LGEEG NE
Sbjct: 181 YSIPLFFTTQGFEIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNE- 239
Query: 233 ENEWEDRKVGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLM 292
WEDRK+ RRK+FLVRRMEL KHFIRTNIEPEWMVL LLPVLPPELRPIIQI+GGKLM
Sbjct: 240 ---WEDRKIVRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLM 296
Query: 293 SSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDG 352
SSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDG
Sbjct: 297 SSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDG 356
Query: 353 HNKVYKSFSDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQT 412
HNKVYKSFSD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQT
Sbjct: 357 HNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQT 416
Query: 413 FLIRGLIRKHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQP 472
F+IRGLIR+H ASNIGVAKS+IREK+PIVWEILQEVM+GHPVLLNRAPTLHRLGIQ+FQP
Sbjct: 417 FVIRGLIRQHLASNIGVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQSFQP 476
Query: 473 ILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPI 532
ILVEGR ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLSPAIGDPI
Sbjct: 477 ILVEGRTICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPI 536
Query: 533 SVPTQDMLIGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYD 592
SVPTQDMLIGLYVLTSG RRGICANRYNP N +N +NE+I N KYM KEPFFCNSYD
Sbjct: 537 SVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNYQNERIYETNYKYM--KEPFFCNSYD 594
Query: 593 AIGAYRQKRINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKE 652
AIGAYRQKRINLDSP WLRW++DQ +++S+EVPIEVHYESFG Y+EIY HYL++RS+KKE
Sbjct: 595 AIGAYRQKRINLDSPLWLRWQLDQRVIASKEVPIEVHYESFGNYHEIYAHYLIVRSVKKE 654
Query: 653 IRCIYIRTTVGHISFYREIEEAIQGFSRAYSY 684
IYIRTTVGHIS YREIEEAIQGFS+A SY
Sbjct: 655 TLYIYIRTTVGHISLYREIEEAIQGFSQACSY 686
>emb|CAD28712.1| RNA polymerase beta' subunit-1 [Calycanthus floridus var. glaucus]
gi|32480834|ref|NP_862745.1| RNA polymerase beta' chain
[Calycanthus floridus var. glaucus]
gi|41017945|sp|Q7YJX9|RPOC1_CALFE DNA-directed RNA
polymerase beta' chain (PEP) (Plastid-encoded RNA
polymerase beta' subunit) (RNA polymerase beta' subunit)
Length = 678
Score = 1224 bits (3166), Expect = 0.0
Identities = 601/683 (87%), Positives = 635/683 (91%), Gaps = 5/683 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIGSVSP+QI AWA K LPNGEI+GEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGSVSPQQIRAWANKTLPNGEIIGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K+ PKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKE EGLVYCDFSFARP+ KKPTFLRLRGSFE EIQS KYSIPLFF
Sbjct: 121 RLPSYIANLLDKPLKEFEGLVYCDFSFARPIAKKPTFLRLRGSFESEIQSRKYSIPLFFT 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GA AIREQL D DLRII D SLVEWKELGEEGS NE WEDRK
Sbjct: 181 TQGFDTFRNREISTGASAIREQLADPDLRIITDHSLVEWKELGEEGSTGNE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
+GRRK+FLVRR+EL KHFIRTN+EPE MVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 237 IGRRKDFLVRRIELAKHFIRTNVEPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL D LTTS STPGE VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 297 RRVIYRNNTLTDPLTTSTSTPGESVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIG+AKSKIREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAI
Sbjct: 417 QHVASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLSP IGDPISVPTQDML
Sbjct: 477 CLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPTIGDPISVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLYVLT GNRRGICANRYNP+N NS+NE++++ N Y KKEP+FC+S DA+GAYRQK
Sbjct: 537 IGLYVLTIGNRRGICANRYNPWNRGNSQNERVNDTNYMY-TKKEPYFCSSSDALGAYRQK 595
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RINLDSP WLRWR+DQ +++SREVPIEV YES GTY+EIYGHYL++RSIKKEI CIYIRT
Sbjct: 596 RINLDSPLWLRWRLDQRVIASREVPIEVQYESLGTYHEIYGHYLIVRSIKKEILCIYIRT 655
Query: 661 TVGHISFYREIEEAIQGFSRAYS 683
TVGHISFYREIEEAIQGF RAYS
Sbjct: 656 TVGHISFYREIEEAIQGFCRAYS 678
>emb|CAD45098.1| RNA polymerase beta' subunit-1 [Amborella trichopoda]
gi|34500905|ref|NP_904090.1| RNA polymerase beta'
subunit-1 [Amborella trichopoda]
gi|41017894|sp|P60287|RPOC1_AMBTC DNA-directed RNA
polymerase beta' chain (PEP) (Plastid-encoded RNA
polymerase beta' subunit) (RNA polymerase beta' subunit)
Length = 680
Score = 1199 bits (3102), Expect = 0.0
Identities = 589/684 (86%), Positives = 630/684 (91%), Gaps = 6/684 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIG VSP+QI+AWA KILPNGE+VGEVTKPYT HYK+NKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGLVSPQQITAWANKILPNGEMVGEVTKPYTFHYKSNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K+ PKFCEQCGVE VDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVESVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+L D+PLKELEGLVYCDFSFARP+ KKPTFLRLRGSFEYEIQS KYSIPLFF
Sbjct: 121 RLPSYIANLSDRPLKELEGLVYCDFSFARPIAKKPTFLRLRGSFEYEIQSRKYSIPLFFT 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQ F+ FRNREIS+GAGAIREQL D DLRII D SLVEWKELGEE SA ENEWED+K
Sbjct: 181 TQCFNLFRNREISTGAGAIREQLADPDLRIITDRSLVEWKELGEERSA----ENEWEDKK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
+ RRK+FLVRRMEL KH +RTN+EPE MVL LLPVLPPELRPIIQIDGGK MSSDINELY
Sbjct: 237 IVRRKDFLVRRMELAKHLLRTNVEPERMVLCLLPVLPPELRPIIQIDGGKPMSSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTLID LTTSRSTPGE VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 297 RRVIYRNNTLIDPLTTSRSTPGESVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIG+AKSKIREKEPIVWEILQ+VM GHPVLLNRAPTLHRLGIQAFQPILVEGRAI
Sbjct: 417 QHVASNIGIAKSKIREKEPIVWEILQKVMEGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLSPAIGDPISVPTQDML
Sbjct: 477 CLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLYVLT GNRRGIC NRYNP N RN +NE + +NN KY K+KEP+FC+SYDA+GAYRQK
Sbjct: 537 IGLYVLTIGNRRGICTNRYNPCNYRNYQNEIVDDNNYKYTKEKEPYFCSSYDALGAYRQK 596
Query: 601 RINLDSPFWLRWRIDQCIMSS--REVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYI 658
RI+L SP WLRWR+DQC+++S REVPIEV YES G Y+EI+ HY +++S+KKEI CIYI
Sbjct: 597 RIDLYSPLWLRWRLDQCVIASINREVPIEVQYESLGIYHEIHEHYRIVKSVKKEIVCIYI 656
Query: 659 RTTVGHISFYREIEEAIQGFSRAY 682
RTTVGHISFYREIEEAIQGF R Y
Sbjct: 657 RTTVGHISFYREIEEAIQGFCRTY 680
>emb|CAB67152.1| RNA polymerase beta' subunit [Oenothera elata subsp. hookeri]
gi|13518328|ref|NP_084687.1| RNA polymerase beta' chain
[Oenothera elata subsp. hookeri]
gi|32699687|sp|Q9MTM4|RPOC1_OENHO DNA-directed RNA
polymerase beta' chain (PEP) (Plastid-encoded RNA
polymerase beta' subunit) (RNA polymerase beta' subunit)
Length = 679
Score = 1194 bits (3089), Expect = 0.0
Identities = 584/684 (85%), Positives = 626/684 (91%), Gaps = 7/684 (1%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIGSVSP+QIS WA KILPNGEIVGEVTKPYT HYKTNKPE+DGLFCERI
Sbjct: 1 MIDRYKHQQLRIGSVSPQQISTWANKILPNGEIVGEVTKPYTFHYKTNKPERDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACG YRVIGDKK+ P FCEQCGVEFVDSR+RRYQMGYIKLACP THVWYLK
Sbjct: 61 FGPIKSGICACGTYRVIGDKKEDPNFCEQCGVEFVDSRIRRYQMGYIKLACPATHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEG VYCDFSFARPV KKPTFLRLRG FEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANLLDKPLKELEGKVYCDFSFARPVAKKPTFLRLRGLFEYEIQSWKYSIPLFFT 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GAGAIREQL LDLR+I+D SLVEWKELGEE S NE WEDRK
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLAGLDLRVIIDYSLVEWKELGEERSTGNE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
+GRRK FLVRR+EL KHFIRTNIEPEWMVL LLPVLPPELRPIIQ+DGGKLMSSDINELY
Sbjct: 237 IGRRKQFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQMDGGKLMSSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNN L DLLTTSRSTPG+LVM QEKLVQEAVDTLLDNGIR +P+RDG NKVYKSF
Sbjct: 297 RRVIYRNNILADLLTTSRSTPGDLVMGQEKLVQEAVDTLLDNGIRSRPVRDGQNKVYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGP+L LHRCGLPREIAIELFQTFLIRGLIR
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPTLPLHRCGLPREIAIELFQTFLIRGLIR 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H AS+I AKS+IREKEPIVWEILQ+VM+GHPVLLNRAPTLHRLGIQAFQP LV+G AI
Sbjct: 417 QHHASDIVGAKSQIREKEPIVWEILQQVMQGHPVLLNRAPTLHRLGIQAFQPFLVKGDAI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSH NLLSPA+GDPISVPTQDML
Sbjct: 477 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAMGDPISVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLY+LTSGN RGIC NRYNP+N N +NE+IS+NN KKKEPFFCNSYDAIGAYRQK
Sbjct: 537 IGLYILTSGNPRGICTNRYNPWNRSNYQNERISDNN---WKKKEPFFCNSYDAIGAYRQK 593
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RI+LDSP WLRWR+DQ +++SREVPIEV YES GTY+EIYGHY+++RS+K EI +YIRT
Sbjct: 594 RIHLDSPLWLRWRLDQRVIASREVPIEVQYESLGTYHEIYGHYIIVRSVKTEILWMYIRT 653
Query: 661 TVGHISFYREIEEAIQGFSRAYSY 684
TVGHIS +RE+EEAIQGF RA Y
Sbjct: 654 TVGHISLFREMEEAIQGFCRARWY 677
>gb|AAX58143.1| RNA polymerase beta I subunit [Lactuca sativa]
Length = 689
Score = 1139 bits (2946), Expect = 0.0
Identities = 555/678 (81%), Positives = 604/678 (88%), Gaps = 7/678 (1%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+Y HQ LRIG VSP+QIS W+KKILPNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYTHQQLRIGLVSPQQISTWSKKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K+ P+FCEQCGVEFVDSR+RRYQMGYIKLA PV HVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIGDEKEDPQFCEQCGVEFVDSRIRRYQMGYIKLAYPVMHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYI +LLDKPL ELE LVYC F FARP+ KKPTFLRLRG EYEIQ WKY IP+FF
Sbjct: 121 RLPSYIVTLLDKPLNELEDLVYCGFYFARPIDKKPTFLRLRGLLEYEIQPWKYRIPIFFT 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
T+ FDTFRNRE+S+G G+IR+QL +LDLRII+D SLVEW+EL EE NEWEDRK
Sbjct: 181 TRSFDTFRNREMSTGGGSIRQQLANLDLRIIIDYSLVEWEELEEE----EPTGNEWEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
VGRRK+FL+RRMEL KHFIRTNIEP+WMVL LLPVLPPELRPI ID KL++SDINE+Y
Sbjct: 237 VGRRKDFLLRRMELAKHFIRTNIEPKWMVLRLLPVLPPELRPIYHIDEDKLVTSDINEIY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RR+IYRNNTL DLLTTS +TP EL++ QEKL+QEAVD LLDNGI GQPMRD HN+VYKS
Sbjct: 297 RRIIYRNNTLTDLLTTSIATPEELIISQEKLLQEAVDALLDNGICGQPMRDDHNRVYKSL 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGR RETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ F+IR LIR
Sbjct: 357 SDVIEGKEGRVRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQAFVIRDLIR 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
KH ASNIGVAKS+IR+K+PIVWEILQE++ HPVLLNRAPTLHRLGIQAF P+LVEGRAI
Sbjct: 417 KHLASNIGVAKSQIRKKKPIVWEILQEILDDHPVLLNRAPTLHRLGIQAFLPVLVEGRAI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLSP IGDPIS PTQDML
Sbjct: 477 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPTIGDPISAPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
GLYVLTSGNRRGIC NRYNP N RN +NE +NN KY KKKEPFFCN YDAIGAYRQK
Sbjct: 537 SGLYVLTSGNRRGICVNRYNPCNRRNYQNE---DNNYKYTKKKEPFFCNPYDAIGAYRQK 593
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RINL SP WLRWR+DQ ++++REVPIE+HYES GTYYEIYGHYL++RSIKKEI IYIRT
Sbjct: 594 RINLGSPLWLRWRLDQRVIAAREVPIEIHYESVGTYYEIYGHYLIVRSIKKEILYIYIRT 653
Query: 661 TVGHISFYREIEEAIQGF 678
T+GHIS YREIEEAIQGF
Sbjct: 654 TLGHISLYREIEEAIQGF 671
>gb|AAT44686.1| RNA polymerase beta' chain [Saccharum hybrid cultivar SP-80-3280]
gi|50812519|ref|YP_054622.1| RNA polymerase beta'
subunit [Saccharum officinarum]
gi|48478764|ref|YP_024372.1| RNA polymerase beta' chain
[Saccharum hybrid cultivar SP-80-3280]
gi|49659503|dbj|BAD27284.1| RNA polymerase beta' subunit
[Saccharum officinarum]
Length = 683
Score = 1081 bits (2796), Expect = 0.0
Identities = 539/689 (78%), Positives = 596/689 (86%), Gaps = 9/689 (1%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MIDQYKH+ L+IG VSP+QI AWAKKILPNGE+VGEVT+P T HYKT+KPEKDGLFCERI
Sbjct: 1 MIDQYKHKQLQIGLVSPQQIKAWAKKILPNGEVVGEVTRPSTFHYKTDKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGN R + + +FC++CGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNSRASVAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
LPSYIA+LLDKPLK+LEGLVY DFSFARP KKPTFLRLRG FE EI S +SI FF+
Sbjct: 121 GLPSYIANLLDKPLKKLEGLVYGDFSFARPSAKKPTFLRLRGLFEDEISSCNHSISPFFS 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
T GF TFRNREI++GAGAIREQL DLDLRII+++SLVEWKEL +EG + +E WEDRK
Sbjct: 181 TPGFATFRNREIATGAGAIREQLADLDLRIIIENSLVEWKELEDEGYSGDE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
RK FL+RRM+L KHFI+TN+EPEWMVL LLPVLPPELRPI+ G K+++SDINELY
Sbjct: 237 RRIRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
+RVI RNN L LL S P +LVMCQEKLVQEAVDTLLD+G RGQPMRDGHNKVYKS
Sbjct: 297 KRVIRRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRGQPMRDGHNKVYKSL 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLH+CGLP EIAI+LFQ F+IR LI
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIAIKLFQLFVIRDLIT 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
K SN+ +AK KI EKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQP LVEGR I
Sbjct: 417 KRATSNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVH+PLSLEAQAEARLLMFSH NLLSPAIGDPI VPTQDML
Sbjct: 477 CLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNS---KYMKKKEPFFCNSYDAIGAY 597
IGLYVLT GNRRGICANRYN +C NS N+KI+ NN+ KY K KEP F +SYDA+GAY
Sbjct: 537 IGLYVLTIGNRRGICANRYN--SCGNSPNKKINYNNNNYYKYTKDKEPHFSSSYDALGAY 594
Query: 598 RQKRINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIY 657
RQKRI L+SP WLRW++DQ I+ SREVPIEV YESFGTY+EIY HYLV+ + KKEIR IY
Sbjct: 595 RQKRIGLNSPLWLRWKLDQRIVGSREVPIEVQYESFGTYHEIYAHYLVVGNRKKEIRSIY 654
Query: 658 IRTTVGHISFYREIEEAIQGFSRAYSYGI 686
IRTT+GHISFYREIEEA+QGFSRAYSY I
Sbjct: 655 IRTTLGHISFYREIEEAVQGFSRAYSYTI 683
>emb|CAA60277.1| RNA polymerase beta' subunit 1 [Zea mays] gi|12481|emb|CAA35196.1|
unnamed protein product [Zea mays]
gi|11467183|ref|NP_043016.1| RNA polymerase beta' chain
[Zea mays] gi|66984|pir||RNZMB1 DNA-directed RNA
polymerase (EC 2.7.7.6) beta'-1 chain - maize
chloroplast gi|133431|sp|P16024|RPOC1_MAIZE DNA-directed
RNA polymerase beta' chain (PEP) (Plastid-encoded RNA
polymerase beta' subunit) (RNA polymerase beta' subunit)
Length = 683
Score = 1076 bits (2783), Expect = 0.0
Identities = 537/689 (77%), Positives = 594/689 (85%), Gaps = 9/689 (1%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MIDQYKH+ L+IG VSP+QI AWAKKILPNGE+VGEVT+P T HYKT+KPEKDGLFCERI
Sbjct: 1 MIDQYKHKQLQIGLVSPQQIKAWAKKILPNGEVVGEVTRPSTFHYKTDKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGN R + + +FC++CGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNSRASVRENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
LPSYIA+LLDKPLK+LEGLVY DFSFARP KKPTFLRLRG FE EI S +SI FF+
Sbjct: 121 GLPSYIANLLDKPLKKLEGLVYGDFSFARPSAKKPTFLRLRGLFEDEISSCNHSISPFFS 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
T GF TFRNREI++GAGAIREQL DLDLRII+++SLVEWKEL +EG + +E WEDRK
Sbjct: 181 TPGFATFRNREIATGAGAIREQLADLDLRIIIENSLVEWKELEDEGYSGDE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
RK FL+RRM+L KHFI+TN+EPEWMVL LLPVLPPELRPI+ G K+++SDINELY
Sbjct: 237 RRIRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
+RVI RNN L LL S P +LVMCQEKLVQEAVDTLLD+G RGQP RDGHNKVYKS
Sbjct: 297 KRVIRRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSL 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLH+CGLP EIAI+LFQ F+IR LI
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIAIKLFQLFVIRDLIT 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
K SN+ +AK KI EKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQP LVEGR I
Sbjct: 417 KRATSNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVH+PLSLEAQAEARLLMFSH NLLSPAIGDPI VPTQDML
Sbjct: 477 CLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNS---KYMKKKEPFFCNSYDAIGAY 597
IGLYVLT GNR GICANRYN +C NS N+K++ NN+ KY K KEP F +SYDA+GAY
Sbjct: 537 IGLYVLTIGNRLGICANRYN--SCGNSPNKKVNYNNNNYYKYTKDKEPHFSSSYDALGAY 594
Query: 598 RQKRINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIY 657
RQKRI L+SP WLRW++DQ I+ SREVPIEV YESFGTY+EIY HYLV+ + KKEIR IY
Sbjct: 595 RQKRIGLNSPLWLRWKLDQRIVGSREVPIEVQYESFGTYHEIYAHYLVVGNRKKEIRSIY 654
Query: 658 IRTTVGHISFYREIEEAIQGFSRAYSYGI 686
IRTT+GHISFYREIEEAIQGFSRAYSY I
Sbjct: 655 IRTTLGHISFYREIEEAIQGFSRAYSYTI 683
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.141 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,232,800,087
Number of Sequences: 2540612
Number of extensions: 55314980
Number of successful extensions: 126263
Number of sequences better than 10.0: 1285
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 122348
Number of HSP's gapped (non-prelim): 1862
length of query: 686
length of database: 863,360,394
effective HSP length: 135
effective length of query: 551
effective length of database: 520,377,774
effective search space: 286728153474
effective search space used: 286728153474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)
Medicago: description of AC126018.19