BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126014.4 + phase: 0
(91 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_912382.1| hypothetical protein [Oryza sativa (japonica cu... 44 0.001
emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultiva... 44 0.001
gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cult... 44 0.001
emb|CAE05716.2| OSJNBb0065J09.12 [Oryza sativa (japonica cultiva... 44 0.001
dbj|BAD31485.1| hypothetical protein [Oryza sativa (japonica cul... 42 0.004
ref|NP_680291.1| expressed protein [Arabidopsis thaliana] 42 0.005
ref|XP_550267.1| hypothetical protein [Oryza sativa (japonica cu... 40 0.015
ref|XP_462700.1| OSJNBa0079F16.5 [Oryza sativa (japonica cultiva... 39 0.033
ref|NP_913187.1| B1015E06.25 [Oryza sativa (japonica cultivar-gr... 37 0.16
dbj|BAD73212.1| hypothetical protein [Oryza sativa (japonica cul... 37 0.16
gb|AAX95405.1| hypothetical protein [Oryza sativa (japonica cult... 37 0.16
emb|CAE05638.2| OSJNBa0038O10.4 [Oryza sativa (japonica cultivar... 36 0.21
ref|XP_483473.1| cyst nematode resistance protein-like [Oryza sa... 36 0.28
ref|XP_479426.1| cyst nematode resistance protein-like protein [... 35 0.62
ref|XP_471041.1| OSJNBb0050O03.4 [Oryza sativa (japonica cultiva... 35 0.62
ref|NP_910231.1| Similar to Arabidopsis thaliana chromosome II B... 35 0.62
dbj|BAD82163.1| cyst nematode resistance protein-like protein [O... 35 0.62
ref|NP_917048.1| similar to phosphatidic acid phosphatase beta [... 34 0.80
dbj|BAD82436.1| hypothetical protein [Oryza sativa (japonica cul... 34 0.80
gb|AAD32866.1| F14N23.4 [Arabidopsis thaliana] 33 1.8
>ref|NP_912382.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|29893670|gb|AAP06924.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1143
Score = 43.9 bits (102), Expect = 0.001
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 11 NLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKA 67
+LA P L+ + VW IWKE N RIF+HK G+LL +K + LW A
Sbjct: 1074 SLANTPGIPKKGLRSLILLVVWEIWKERNRRIFDHKEMATGVLLAKIKEEASLWALA 1130
>emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultivar-group)]
Length = 1189
Score = 43.9 bits (102), Expect = 0.001
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 11 NLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKA 67
+LA P L+ + VW IWKE N RIF+HK G+LL +K + LW A
Sbjct: 1120 SLANTPGIPKKGLRSLILLVVWEIWKERNRRIFDHKEMATGVLLAKIKEEASLWALA 1176
>gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1023
Score = 43.9 bits (102), Expect = 0.001
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 11 NLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKA 67
+LA P L+ + VW IWKE N RIF+HK G+LL +K + LW A
Sbjct: 954 SLANTPGIPKKGLRSLILLVVWEIWKERNRRIFDHKEMATGVLLAKIKEEASLWALA 1010
>emb|CAE05716.2| OSJNBb0065J09.12 [Oryza sativa (japonica cultivar-group)]
Length = 436
Score = 43.5 bits (101), Expect = 0.001
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 11 NLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKA 67
+LA P L+ + VW IWKE N RIF++K VGLLL +K + +W A
Sbjct: 367 SLANTPNIPKKGLRSLILLVVWEIWKERNRRIFDNKEMAVGLLLAKIKEEASVWALA 423
>dbj|BAD31485.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 76
Score = 42.0 bits (97), Expect = 0.004
Identities = 21/55 (38%), Positives = 33/55 (59%), Gaps = 1/55 (1%)
Query: 17 RSTHTFLQVIWHACVWL-IWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANKL 70
RS L+ + CV +WKETN+R+F+++ K VGLL ++K +W +A L
Sbjct: 17 RSRRGSLRYLGSLCVLDDVWKETNARVFHNREKSVGLLFGAIKEEVIIWKEAGVL 71
>ref|NP_680291.1| expressed protein [Arabidopsis thaliana]
Length = 625
Score = 41.6 bits (96), Expect = 0.005
Identities = 18/53 (33%), Positives = 32/53 (59%)
Query: 13 AGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWL 65
A ++ +++I+ ACV+LIW+E NSRI ++ ++ LL ++ T WL
Sbjct: 547 ASTSKNLSLIIKLIFQACVYLIWRERNSRIHSNNSRTPSHLLKEIQQTIRAWL 599
>ref|XP_550267.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|55297516|dbj|BAD68318.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 76
Score = 40.0 bits (92), Expect = 0.015
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 11 NLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKA 67
N+ G P+ L ++ VW IWKE N RI++HK LL +K LW+ A
Sbjct: 10 NMCGVPKKGLRSLILL---VVWEIWKERNRRIYDHKEMATSFLLTKIKEEVGLWVLA 63
>ref|XP_462700.1| OSJNBa0079F16.5 [Oryza sativa (japonica cultivar-group)]
gi|39546257|emb|CAD39830.3| OSJNBa0079F16.5 [Oryza
sativa (japonica cultivar-group)]
Length = 153
Score = 38.9 bits (89), Expect = 0.033
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 32 WLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKA 67
W++WKE N+R+F ++ + G L S+K +W +A
Sbjct: 106 WMVWKERNARVFQNQRRSAGFLFGSIKEEVAIWKEA 141
>ref|NP_913187.1| B1015E06.25 [Oryza sativa (japonica cultivar-group)]
Length = 404
Score = 36.6 bits (83), Expect = 0.16
Identities = 15/40 (37%), Positives = 22/40 (54%)
Query: 32 WLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANKLT 71
W +WKE NSR+F+ V ++L+S+ LW A T
Sbjct: 45 WQLWKERNSRVFDSALSSVSVVLESIHSEGHLWSLAGIAT 84
>dbj|BAD73212.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|56201690|dbj|BAD73168.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 247
Score = 36.6 bits (83), Expect = 0.16
Identities = 15/40 (37%), Positives = 22/40 (54%)
Query: 32 WLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANKLT 71
W +WKE NSR+F+ V ++L+S+ LW A T
Sbjct: 40 WQLWKERNSRVFDSALSSVSVVLESIHSEGHLWSLAGIAT 79
>gb|AAX95405.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 66
Score = 36.6 bits (83), Expect = 0.16
Identities = 16/35 (45%), Positives = 19/35 (53%)
Query: 31 VWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWL 65
VW IWKE N RIF HK L +K + LW+
Sbjct: 17 VWEIWKERNQRIFEHKESTTTYPLAKIKEEARLWM 51
>emb|CAE05638.2| OSJNBa0038O10.4 [Oryza sativa (japonica cultivar-group)]
gi|50926570|ref|XP_473232.1| OSJNBa0038O10.4 [Oryza
sativa (japonica cultivar-group)]
Length = 1045
Score = 36.2 bits (82), Expect = 0.21
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 2 VRDNLHRFGNLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTS 61
V+D +++G P+ L+ + V +WKE N RIF+HK LL +K +
Sbjct: 970 VKDWWEMLASVSGVPKKG---LRTLILLIVLEVWKERNRRIFDHKEAATSYLLSKIKEEA 1026
Query: 62 FLWLKA 67
+W A
Sbjct: 1027 GMWALA 1032
>ref|XP_483473.1| cyst nematode resistance protein-like [Oryza sativa (japonica
cultivar-group)] gi|42407982|dbj|BAD09120.1| cyst
nematode resistance protein-like [Oryza sativa (japonica
cultivar-group)] gi|42407880|dbj|BAD09021.1| cyst
nematode resistance protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 158
Score = 35.8 bits (81), Expect = 0.28
Identities = 14/36 (38%), Positives = 21/36 (57%)
Query: 32 WLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKA 67
W IWKE N+RIF H +K L +++ +W +A
Sbjct: 116 WFIWKERNARIFEHVSKSATQLFWAIREEIIIWREA 151
>ref|XP_479426.1| cyst nematode resistance protein-like protein [Oryza sativa
(japonica cultivar-group)] gi|50510233|dbj|BAD31431.1|
cyst nematode resistance protein-like protein [Oryza
sativa (japonica cultivar-group)]
gi|22296318|dbj|BAC10089.1| cyst nematode resistance
protein-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 210
Score = 34.7 bits (78), Expect = 0.62
Identities = 14/36 (38%), Positives = 21/36 (57%)
Query: 32 WLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKA 67
WLIWKE N+RIF + + L++ +K +W A
Sbjct: 166 WLIWKERNARIFEQRLRSPEQLVEDIKEEINVWRSA 201
>ref|XP_471041.1| OSJNBb0050O03.4 [Oryza sativa (japonica cultivar-group)]
gi|38344107|emb|CAE01714.2| OSJNBb0050O03.4 [Oryza sativa
(japonica cultivar-group)]
Length = 1199
Score = 34.7 bits (78), Expect = 0.62
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 16 PRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKAN 68
P H+ + W +WKE NS++F+ V ++L+S++ LW A+
Sbjct: 1117 PEHLHSGFDSLVLLVSWQLWKERNSKVFDSALASVVVVLESIRSEGQLWSLAS 1169
>ref|NP_910231.1| Similar to Arabidopsis thaliana chromosome II BAC F9O13 genomic
sequence, putative non-LTR retroelement reverse
transcriptase. (AC006248) [Oryza sativa (japonica
cultivar-group)]
Length = 1223
Score = 34.7 bits (78), Expect = 0.62
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 32 WLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKAN 68
W +WKE NSR+F+ V ++++S + LW A+
Sbjct: 1177 WQLWKERNSRVFDSALASVAVVMESTRSEGQLWSLAD 1213
>dbj|BAD82163.1| cyst nematode resistance protein-like protein [Oryza sativa
(japonica cultivar-group)] gi|56784986|dbj|BAD82516.1|
cyst nematode resistance protein-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 165
Score = 34.7 bits (78), Expect = 0.62
Identities = 14/36 (38%), Positives = 20/36 (54%)
Query: 32 WLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKA 67
WL+WKE N+R+F+ K LL +K +W A
Sbjct: 123 WLVWKERNARVFDQKFNTADLLSADIKEEVAVWRAA 158
>ref|NP_917048.1| similar to phosphatidic acid phosphatase beta [Oryza sativa
(japonica cultivar-group)]
Length = 328
Score = 34.3 bits (77), Expect = 0.80
Identities = 19/66 (28%), Positives = 32/66 (47%), Gaps = 3/66 (4%)
Query: 2 VRDNLHRFGNLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTS 61
V+D +++G P+ L ++ VW +WK N RIF++K LL +K +
Sbjct: 253 VKDWWKILASVSGVPKKGLCTLILL---IVWEVWKVRNRRIFDYKEATTSYLLSKIKEEA 309
Query: 62 FLWLKA 67
+W A
Sbjct: 310 GMWALA 315
>dbj|BAD82436.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 63
Score = 34.3 bits (77), Expect = 0.80
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 31 VWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKA 67
VW IWK+ N RIF HK L +K + W A
Sbjct: 14 VWEIWKKRNQRIFQHKEATSSFLFAKIKEEARTWTMA 50
>gb|AAD32866.1| F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 33.1 bits (74), Expect = 1.8
Identities = 13/47 (27%), Positives = 27/47 (56%)
Query: 13 AGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKL 59
A R+ ++++HA V+ IW+E N RI ++ + L++ ++L
Sbjct: 1077 ASRDRNITLITKLLFHASVYFIWRERNLRIHSNSVRPAHLIIKEIQL 1123
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.326 0.137 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,244,290
Number of Sequences: 2540612
Number of extensions: 5076332
Number of successful extensions: 13088
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 13055
Number of HSP's gapped (non-prelim): 40
length of query: 91
length of database: 863,360,394
effective HSP length: 67
effective length of query: 24
effective length of database: 693,139,390
effective search space: 16635345360
effective search space used: 16635345360
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC126014.4