BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126011.4 + phase: 0 /pseudo
(133 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB75932.1| putative protein [Arabidopsis thaliana] gi|11278... 78 4e-14
gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Ar... 68 6e-11
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi... 68 6e-11
gb|AAS48654.1| leucine rich hrp associated protein [Xanthomonas ... 32 2.6
ref|YP_198704.1| HpaF [Xanthomonas oryzae pv. oryzae KACC10331] ... 32 2.6
dbj|BAB63151.1| hrp-associated protein [Xanthomonas oryzae pv. o... 32 2.6
gb|AAP51797.1| putative copia-type polyprotein [Oryza sativa (ja... 32 3.4
gb|AAP46257.1| putative polyprotein [Oryza sativa (japonica cult... 32 3.4
emb|CAB03923.1| Hypothetical protein C25F9.5 [Caenorhabditis ele... 32 3.4
ref|XP_470746.1| putative gag-pol polyprotein [Oryza sativa] gi|... 32 3.4
ref|ZP_00317169.1| COG1291: Flagellar motor component [Microbulb... 31 7.5
emb|CAF93731.1| unnamed protein product [Tetraodon nigroviridis] 31 7.5
dbj|BAB72716.1| WD-repeat containing protein [Nostoc sp. PCC 712... 31 7.5
emb|CAF29774.1| conserved hypothetical protein [Methanococcus ma... 30 9.8
gb|AAN70277.1| conserved hypothetical protein [Pseudomonas putid... 30 9.8
>emb|CAB75932.1| putative protein [Arabidopsis thaliana] gi|11278365|pir||T47841
hypothetical protein T2O9.150 - Arabidopsis thaliana
Length = 1339
Score = 78.2 bits (191), Expect = 4e-14
Identities = 40/79 (50%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 29 NFLRSKEYWSLVDDGVARLGSGG-PLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETI 87
NFLRS+E W LV++G+ + G P++ A++ E LK LKVKN+L AIDR+I+ETI
Sbjct: 28 NFLRSRELWRLVEEGIPAIVVGTTPVSEAQRSAVEEAKLKDLKVKNFLFQAIDREILETI 87
Query: 88 LEKNTLKKIWASMRGKDKG 106
L+K+T K IW SM+ K +G
Sbjct: 88 LDKSTSKAIWESMKKKYQG 106
>gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Arabidopsis
thaliana] gi|25301683|pir||E86451 probable copia-type
polyprotein, 28768-32772 [imported] - Arabidopsis
thaliana
Length = 1334
Score = 67.8 bits (164), Expect = 6e-11
Identities = 33/78 (42%), Positives = 50/78 (63%)
Query: 29 NFLRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETIL 88
N +RSKE+W +++ G+ R LT A++ E +K KVKNYL +ID+ I++TIL
Sbjct: 25 NLIRSKEWWDIIETGIPRPERNVILTGAQRTELAEKTVKDHKVKNYLFASIDKTILKTIL 84
Query: 89 EKNTLKKIWASMRGKDKG 106
+K T K +W SM+ K +G
Sbjct: 85 QKETSKDLWESMKRKYQG 102
>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
thaliana]
Length = 1334
Score = 67.8 bits (164), Expect = 6e-11
Identities = 33/78 (42%), Positives = 50/78 (63%)
Query: 29 NFLRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETIL 88
N +RSKE+W +++ G+ R LT A++ E +K KVKNYL +ID+ I++TIL
Sbjct: 25 NLIRSKEWWDIIETGIPRPERNVILTGAQRTELAEKTVKDHKVKNYLFASIDKTILKTIL 84
Query: 89 EKNTLKKIWASMRGKDKG 106
+K T K +W SM+ K +G
Sbjct: 85 QKETSKDLWESMKRKYQG 102
>gb|AAS48654.1| leucine rich hrp associated protein [Xanthomonas oryzae pv. oryzae]
Length = 646
Score = 32.3 bits (72), Expect = 2.6
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 28 GNFLRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETI 87
G FL +L DG+ ++G GGP + KT + MLK+ ++H D++ +
Sbjct: 490 GQFLNDHTVKTLNMDGMTQVGDGGPRVRGDVKTAFAEMLKH-----NIMHTQDQETALGL 544
Query: 88 LEK 90
L++
Sbjct: 545 LQQ 547
>ref|YP_198704.1| HpaF [Xanthomonas oryzae pv. oryzae KACC10331]
gi|58424282|gb|AAW73319.1| HpaF [Xanthomonas oryzae pv.
oryzae KACC10331]
Length = 679
Score = 32.3 bits (72), Expect = 2.6
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 28 GNFLRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETI 87
G FL +L DG+ ++G GGP + KT + MLK+ ++H D++ +
Sbjct: 523 GQFLNEHTVKTLNMDGMTQVGDGGPRVRGDVKTAFAEMLKH-----NIMHTQDQETALGL 577
Query: 88 LEK 90
L++
Sbjct: 578 LQQ 580
>dbj|BAB63151.1| hrp-associated protein [Xanthomonas oryzae pv. oryzae]
Length = 646
Score = 32.3 bits (72), Expect = 2.6
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 28 GNFLRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETI 87
G FL +L DG+ ++G GGP + KT + MLK+ ++H D++ +
Sbjct: 490 GQFLNEHTVKTLNMDGMTQVGDGGPRVRGDVKTAFAEMLKH-----NIMHTQDQETALGL 544
Query: 88 LEK 90
L++
Sbjct: 545 LQQ 547
>gb|AAP51797.1| putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530416|ref|NP_919510.1| putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18542917|gb|AAL75752.1| Putative
copia-type polyprotein [Oryza sativa]
Length = 1350
Score = 32.0 bits (71), Expect = 3.4
Identities = 18/87 (20%), Positives = 39/87 (44%)
Query: 31 LRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETILEK 90
L S+ W +V++G +G LTA ++K+ E + K + + + I+
Sbjct: 25 LLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSDAKALFLIQQGVAESLFPRIIGA 84
Query: 91 NTLKKIWASMRGKDKGYKSI*GKGLRT 117
K+ W ++ + +G + + L+T
Sbjct: 85 KKSKEAWDKLKEEFQGSQKVLAVKLQT 111
>gb|AAP46257.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50919599|ref|XP_470160.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1335
Score = 32.0 bits (71), Expect = 3.4
Identities = 18/87 (20%), Positives = 39/87 (44%)
Query: 31 LRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETILEK 90
L S+ W +V++G +G LTA ++K+ E + K + + + I+
Sbjct: 25 LLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSDAKALFLIQQGVAESLFPRIIGA 84
Query: 91 NTLKKIWASMRGKDKGYKSI*GKGLRT 117
K+ W ++ + +G + + L+T
Sbjct: 85 KKSKEAWDKLKEEFQGSQKVLAVKLQT 111
>emb|CAB03923.1| Hypothetical protein C25F9.5 [Caenorhabditis elegans]
gi|17558242|ref|NP_507777.1| SNF2 related domain
containing protein family member (5T882) [Caenorhabditis
elegans] gi|7496499|pir||T19464 hypothetical protein
C25F9.5 - Caenorhabditis elegans
Length = 707
Score = 32.0 bits (71), Expect = 3.4
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 38 SLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETILEKNTLKKIW 97
S DD RL +K Y M L ++NY+L ++ K +E + K ++KIW
Sbjct: 617 SFTDDTGGRLLRAWTFAKLCRKKAYAMSHSNLLLRNYILESV--KSMEECINKADIEKIW 674
Query: 98 ASMRGKD 104
+ D
Sbjct: 675 KQLEASD 681
>ref|XP_470746.1| putative gag-pol polyprotein [Oryza sativa]
gi|18071369|gb|AAL58228.1| putative gag-pol polyprotein
[Oryza sativa]
Length = 1167
Score = 32.0 bits (71), Expect = 3.4
Identities = 18/87 (20%), Positives = 39/87 (44%)
Query: 31 LRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETILEK 90
L S+ W +V++G +G LTA ++K+ E + K + + + I+
Sbjct: 25 LLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSDAKALFLIQQGVAESLFPRIIGA 84
Query: 91 NTLKKIWASMRGKDKGYKSI*GKGLRT 117
K+ W ++ + +G + + L+T
Sbjct: 85 KKSKEAWDKLKEEFQGSQKVLAVKLQT 111
>ref|ZP_00317169.1| COG1291: Flagellar motor component [Microbulbifer degradans 2-40]
Length = 246
Score = 30.8 bits (68), Expect = 7.5
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 26 LDGNFLRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYL 75
L GNFL + SLV+ A + GG L AA +TPY + + L + ++
Sbjct: 17 LGGNFLEGGNWTSLVNGPAALVVVGGTLGAAILQTPYSGIKRSLTLFKWI 66
>emb|CAF93731.1| unnamed protein product [Tetraodon nigroviridis]
Length = 936
Score = 30.8 bits (68), Expect = 7.5
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 52 PLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETILE 89
PL Q TPYEM++ ++ K Y L RK++E +LE
Sbjct: 314 PLPIEYQLTPYEMLMDDIRSKRYKL----RKVMELLLE 347
>dbj|BAB72716.1| WD-repeat containing protein [Nostoc sp. PCC 7120]
gi|25532116|pir||AE1901 WD-repeat containing protein
[imported] - Nostoc sp. (strain PCC 7120)
gi|17228254|ref|NP_484802.1| WD-repeat containing
protein [Nostoc sp. PCC 7120]
Length = 1329
Score = 30.8 bits (68), Expect = 7.5
Identities = 14/43 (32%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Query: 62 YEMMLKYLKVKNYLLHAIDRKIIETILEKNTLKKIWASMRGKD 104
+ M KYL V N L + D K++ T ++ K+W +++GK+
Sbjct: 726 HNKMTKYLSVVNNLFFSPDGKVVATTSRRDATTKLW-NLQGKE 767
>emb|CAF29774.1| conserved hypothetical protein [Methanococcus maripaludis S2]
gi|45357781|ref|NP_987338.1| hypothetical protein
MMP0218 [Methanococcus maripaludis S2]
Length = 275
Score = 30.4 bits (67), Expect = 9.8
Identities = 19/62 (30%), Positives = 32/62 (50%), Gaps = 2/62 (3%)
Query: 32 RSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIE--TILE 89
+S +Y+S +D + +GS +T + ++ L Y K ++Y L+A IIE L
Sbjct: 116 KSLKYFSKIDSRIEEIGSKLKVTDSWVDEDFKNALNYAKDRDYTLNASKEDIIEIYEFLS 175
Query: 90 KN 91
KN
Sbjct: 176 KN 177
>gb|AAN70277.1| conserved hypothetical protein [Pseudomonas putida KT2440]
gi|26991388|ref|NP_746813.1| hypothetical protein PP4704
[Pseudomonas putida KT2440]
Length = 978
Score = 30.4 bits (67), Expect = 9.8
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 55 AAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETI 87
A E P++++LK ++++NYL+H DR E +
Sbjct: 358 AKEPSKPWQVLLKDVQLRNYLVHLADRSQKEPV 390
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.333 0.147 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,568,485
Number of Sequences: 2540612
Number of extensions: 7574491
Number of successful extensions: 23994
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 23982
Number of HSP's gapped (non-prelim): 15
length of query: 133
length of database: 863,360,394
effective HSP length: 109
effective length of query: 24
effective length of database: 586,433,686
effective search space: 14074408464
effective search space used: 14074408464
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 67 (30.4 bits)
Medicago: description of AC126011.4