BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126009.3 - phase: 0 /pseudo
(60 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_911351.1| putative blue copper protein precursor [Oryza s... 54 8e-07
ref|XP_469940.1| putative blue copper-binding protein [Oryza sat... 54 1e-06
gb|AAC69948.1| putative uclacyanin I [Arabidopsis thaliana] gi|3... 53 2e-06
ref|XP_467895.1| putative Blue copper protein precursor [Oryza s... 51 9e-06
emb|CAA80963.1| blue copper protein [Pisum sativum] gi|7430875|p... 50 1e-05
emb|CAD41461.2| OSJNBa0079A21.5 [Oryza sativa (japonica cultivar... 49 3e-05
dbj|BAD37230.1| putative blue copper protein [Oryza sativa (japo... 49 3e-05
ref|XP_450958.1| unknown protein [Oryza sativa (japonica cultiva... 49 4e-05
ref|NP_919090.2| blue copper-binding protein-like [Oryza sativa ... 49 4e-05
emb|CAB87864.1| stellacyanin (uclacyanin 3)-like protein [Arabid... 48 6e-05
ref|XP_469939.1| putative blue copper-binding protein [Oryza sat... 47 1e-04
gb|AAM62707.1| blue copper protein, putative [Arabidopsis thaliana] 47 1e-04
gb|AAD10251.1| blue copper-binding protein homolog [Triticum aes... 47 1e-04
gb|AAC32421.1| stellacyanin [Cucumis sativus] gi|7430876|pir||T1... 47 1e-04
emb|CAC39044.1| uclacyanin 3-like protein [Oryza sativa] 47 1e-04
dbj|BAB02059.1| blue copper-binding protein-like [Arabidopsis th... 47 1e-04
ref|XP_467093.1| putative uclacyanin 3 [Oryza sativa (japonica c... 47 2e-04
gb|AAP21370.1| At3g27200 [Arabidopsis thaliana] gi|18252983|gb|A... 47 2e-04
emb|CAE51320.1| blue copper binding protein [Hordeum vulgare sub... 47 2e-04
dbj|BAB02115.1| unnamed protein product [Arabidopsis thaliana] 46 2e-04
>ref|NP_911351.1| putative blue copper protein precursor [Oryza sativa (japonica
cultivar-group)] gi|50509953|dbj|BAD30363.1| putative
blue copper protein precursor [Oryza sativa (japonica
cultivar-group)] gi|22202776|dbj|BAC07432.1| putative
blue copper protein precursor [Oryza sativa (japonica
cultivar-group)]
Length = 168
Score = 54.3 bits (129), Expect = 8e-07
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 1 MASSRVVLILSISMV-LLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
MAS +V+L+ +S V LL ++ ATD+ VGD GWT+++ T WA K F++GD L
Sbjct: 1 MASRQVLLLAIVSAVALLPAMVSATDYTVGDGHGWTLEYPSTNWADGKSFQIGDKL 56
>ref|XP_469940.1| putative blue copper-binding protein [Oryza sativa (japonica
cultivar-group)] gi|28269428|gb|AAO37971.1| putative
blue copper-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 172
Score = 53.5 bits (127), Expect = 1e-06
Identities = 25/59 (42%), Positives = 39/59 (65%), Gaps = 4/59 (6%)
Query: 1 MASSRVVLI----LSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
MAS +++ + ++++++L + A AT+H+VGD GW + FDY WA K FRVGD L
Sbjct: 1 MASKQMLAVAAAAVALAVLLPARGAAATEHMVGDGNGWILGFDYAAWAATKQFRVGDTL 59
>gb|AAC69948.1| putative uclacyanin I [Arabidopsis thaliana]
gi|3399767|gb|AAC32038.1| uclacyanin I [Arabidopsis
thaliana] gi|25408225|pir||D84731 probable uclacyanin I
[imported] - Arabidopsis thaliana
gi|15225223|ref|NP_180789.1| uclacyanin I [Arabidopsis
thaliana]
Length = 261
Score = 52.8 bits (125), Expect = 2e-06
Identities = 23/55 (41%), Positives = 32/55 (57%)
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
MAS +++I+S+ L + +ATDH +G GWTV WA + F VGDNL
Sbjct: 1 MASREMLIIISVLATTLIGLTVATDHTIGGPSGWTVGASLRTWAAGQTFAVGDNL 55
>ref|XP_467895.1| putative Blue copper protein precursor [Oryza sativa (japonica
cultivar-group)] gi|46805696|dbj|BAD17097.1| putative
Blue copper protein precursor [Oryza sativa (japonica
cultivar-group)]
Length = 246
Score = 50.8 bits (120), Expect = 9e-06
Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 10 LSISMVLLS---SVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
L+I+ +LL+ S A AT + VGD GWT+ DYT WA K F+VGD+L
Sbjct: 9 LTIAALLLAACASSAAATSYTVGDASGWTIGVDYTSWAGSKSFKVGDSL 57
>emb|CAA80963.1| blue copper protein [Pisum sativum] gi|7430875|pir||T06555 blue
copper-binding protein II - garden pea
gi|2493318|sp|Q41001|BCP_PEA Blue copper protein
precursor gi|1098264|prf||2115352A blue Cu protein
Length = 189
Score = 50.4 bits (119), Expect = 1e-05
Identities = 21/53 (39%), Positives = 35/53 (65%)
Query: 3 SSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
S+ +VL ++++ ++ ++AT + VGD GW + DY+ WA DK F VGD+L
Sbjct: 4 SNALVLCFLLAIINMALPSLATVYTVGDTSGWVIGGDYSTWASDKTFAVGDSL 56
>emb|CAD41461.2| OSJNBa0079A21.5 [Oryza sativa (japonica cultivar-group)]
gi|50927428|ref|XP_473394.1| OSJNBa0079A21.5 [Oryza
sativa (japonica cultivar-group)]
Length = 181
Score = 49.3 bits (116), Expect = 3e-05
Identities = 19/48 (39%), Positives = 30/48 (61%)
Query: 8 LILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
+++++ + ++ A A D+ VGD GWT DYT WA+ K F +GD L
Sbjct: 8 VLVAVLLAAAAAPASAKDYTVGDSSGWTTGVDYTAWARGKTFNIGDTL 55
>dbj|BAD37230.1| putative blue copper protein [Oryza sativa (japonica
cultivar-group)] gi|51091368|dbj|BAD36102.1| putative
blue copper protein [Oryza sativa (japonica
cultivar-group)]
Length = 198
Score = 49.3 bits (116), Expect = 3e-05
Identities = 26/56 (46%), Positives = 36/56 (63%), Gaps = 3/56 (5%)
Query: 1 MASS-RVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
MASS +V +L +S +++ A AT + VGD GW + DYT WA DK F++GD L
Sbjct: 1 MASSLALVALLLVSCAVVA--AAATKYTVGDTSGWAMGADYTTWASDKKFKMGDTL 54
>ref|XP_450958.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|47848404|dbj|BAD22262.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|47848309|dbj|BAD22173.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 152
Score = 48.9 bits (115), Expect = 4e-05
Identities = 25/55 (45%), Positives = 33/55 (59%), Gaps = 1/55 (1%)
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
MA S VL+ + +V ++VA AT + VGD +GWT +Y WA K FR GD L
Sbjct: 1 MAVSSAVLV-GLLVVSCAAVAAATRYTVGDGEGWTTGVNYNNWANGKFFRQGDEL 54
>ref|NP_919090.2| blue copper-binding protein-like [Oryza sativa (japonica
cultivar-group)] gi|38175738|dbj|BAC22293.2| blue
copper-binding protein-like [Oryza sativa (japonica
cultivar-group)] gi|50508698|dbj|BAD31225.1| blue
copper-binding protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 178
Score = 48.9 bits (115), Expect = 4e-05
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWA-QDKVFRVGD 53
M R++ +L +++ LL + A+AT++ VGD+KGW D DYT W + + F GD
Sbjct: 1 MVCHRMLPLLVVAVALLPAAAVATNYTVGDEKGWNPDVDYTAWVKKHRPFYKGD 54
>emb|CAB87864.1| stellacyanin (uclacyanin 3)-like protein [Arabidopsis thaliana]
gi|15232287|ref|NP_191586.1| uclacyanin, putative
[Arabidopsis thaliana] gi|11250058|pir||T49222
stellacyanin (uclacyanin 3)-like protein - Arabidopsis
thaliana
Length = 187
Score = 48.1 bits (113), Expect = 6e-05
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
M S+ +L + +++ A VGD+ GWT+ +YT W +K FRVGD L
Sbjct: 1 MGSTAATALLLLLLLVAVPAVFAVTFQVGDNDGWTIGVEYTSWVSEKTFRVGDTL 55
>ref|XP_469939.1| putative blue copper-binding protein [Oryza sativa (japonica
cultivar-group)] gi|28269430|gb|AAO37973.1| putative
blue copper-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 135
Score = 47.4 bits (111), Expect = 1e-04
Identities = 24/59 (40%), Positives = 34/59 (56%)
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMF 59
+A+ VV+ +++ L ++ A AT + VGDD GW DY WA K F+VGD L F
Sbjct: 10 LAAVVVVVAAAVAGSLPATTASATAYRVGDDSGWDNGVDYDAWAHGKRFKVGDTLDVEF 68
>gb|AAM62707.1| blue copper protein, putative [Arabidopsis thaliana]
Length = 172
Score = 47.4 bits (111), Expect = 1e-04
Identities = 20/60 (33%), Positives = 33/60 (54%)
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMFS 60
M V++IL S +L A+A H++G +GW D+ W+ D+ F+VGD + +S
Sbjct: 1 MKMQAVLVILVFSGLLSVKTALAAQHVIGGSQGWEQSVDFDSWSSDQSFKVGDQIVFKYS 60
>gb|AAD10251.1| blue copper-binding protein homolog [Triticum aestivum]
Length = 176
Score = 47.4 bits (111), Expect = 1e-04
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMFS 60
MA+ ++ L+ +M L A A + VG+ GWT++ DY+ W K F VGD + +S
Sbjct: 1 MAAMKITLLAVAAMAALLGTASAVTYNVGEQGGWTLNTDYSSWVSGKKFNVGDEIVFKYS 60
>gb|AAC32421.1| stellacyanin [Cucumis sativus] gi|7430876|pir||T10484 blue copper
protein stellacyanin precursor - cucumber
Length = 182
Score = 47.4 bits (111), Expect = 1e-04
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 1 MASSRVVLILSISMVLLSSVAIA--TDHIVGDDKGWTVDFD---YTQWAQDKVFRVGDNL 55
MA+ V +L + V+ A A T HIVGD+ GW+V Y+QWA K FRVGD+L
Sbjct: 1 MAAGSVAFVLGLIAVVFLHPATAQSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSL 60
>emb|CAC39044.1| uclacyanin 3-like protein [Oryza sativa]
Length = 202
Score = 47.0 bits (110), Expect = 1e-04
Identities = 24/62 (38%), Positives = 35/62 (55%), Gaps = 2/62 (3%)
Query: 1 MASSRVVLILSISMVLLSSVA--IATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTM 58
MA + + ++LL++VA A D+ VGD GW+ DY WA+ K F VGD+L
Sbjct: 1 MAGVHGLAAAGLVVLLLAAVAPAFAVDYTVGDTSGWSSGVDYVTWAKSKTFSVGDSLVFQ 60
Query: 59 FS 60
+S
Sbjct: 61 YS 62
>dbj|BAB02059.1| blue copper-binding protein-like [Arabidopsis thaliana]
Length = 129
Score = 47.0 bits (110), Expect = 1e-04
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 3 SSRVVL--ILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
SS ++L I S+S ++L S T+HIVGD GW + +YT W Q + F VGD L
Sbjct: 9 SSLIILYAIFSLSSLMLKSEG--TEHIVGDSNGWELFTNYTNWTQGREFHVGDVL 61
>ref|XP_467093.1| putative uclacyanin 3 [Oryza sativa (japonica cultivar-group)]
gi|49387518|dbj|BAD24983.1| putative uclacyanin 3
[Oryza sativa (japonica cultivar-group)]
Length = 202
Score = 46.6 bits (109), Expect = 2e-04
Identities = 24/62 (38%), Positives = 35/62 (55%), Gaps = 2/62 (3%)
Query: 1 MASSRVVLILSISMVLLSSVA--IATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTM 58
MA + + ++LL++VA A D+ VGD GW+ DY WA+ K F VGD+L
Sbjct: 1 MAGVHGLAAAGLVVLLLAAVAPAFAVDYTVGDTSGWSSGVDYDTWAKSKTFSVGDSLVFQ 60
Query: 59 FS 60
+S
Sbjct: 61 YS 62
>gb|AAP21370.1| At3g27200 [Arabidopsis thaliana] gi|18252983|gb|AAL62418.1| blue
copper protein, putative [Arabidopsis thaliana]
gi|18405269|ref|NP_566810.1| plastocyanin-like
domain-containing protein [Arabidopsis thaliana]
Length = 174
Score = 46.6 bits (109), Expect = 2e-04
Identities = 20/60 (33%), Positives = 33/60 (54%)
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMFS 60
M V++IL S +L A+A H++G +GW D+ W+ D+ F+VGD + +S
Sbjct: 1 MKMQAVLVILVFSGLLSVKTALAARHVIGGSQGWEQSVDFDSWSSDQSFKVGDQIVFKYS 60
>emb|CAE51320.1| blue copper binding protein [Hordeum vulgare subsp. vulgare]
Length = 177
Score = 46.6 bits (109), Expect = 2e-04
Identities = 22/56 (39%), Positives = 32/56 (56%), Gaps = 1/56 (1%)
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKG-WTVDFDYTQWAQDKVFRVGDNL 55
MA+ + L+ +M L A A + VG+ G WT+D DY++W DK F VGD +
Sbjct: 1 MAAMKAALLAVAAMAALLGAASAATYTVGEPGGSWTLDTDYSKWVSDKKFNVGDEI 56
>dbj|BAB02115.1| unnamed protein product [Arabidopsis thaliana]
Length = 169
Score = 46.2 bits (108), Expect = 2e-04
Identities = 19/55 (34%), Positives = 31/55 (55%)
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
M V++IL S +L A+A H++G +GW D+ W+ D+ F+VGD +
Sbjct: 1 MKMQAVLVILVFSGLLSVKTALAARHVIGGSQGWEQSVDFDSWSSDQSFKVGDQI 55
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,375,122
Number of Sequences: 2540612
Number of extensions: 2353094
Number of successful extensions: 8152
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 8070
Number of HSP's gapped (non-prelim): 109
length of query: 60
length of database: 863,360,394
effective HSP length: 36
effective length of query: 24
effective length of database: 771,898,362
effective search space: 18525560688
effective search space used: 18525560688
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 68 (30.8 bits)
Medicago: description of AC126009.3