BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125481.2 + phase: 0 /pseudo
(1546 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 453 e-125
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 357 2e-96
gb|AAK50400.1| Putative retroelement [Oryza sativa] 346 3e-93
gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cult... 342 8e-92
gb|AAT81681.1| putative retrotransposon protein [Oryza sativa (j... 337 2e-90
gb|AAP53628.1| putative retroelement [Oryza sativa (japonica cul... 332 8e-89
emb|CAE03952.2| OSJNBb0085H11.1 [Oryza sativa (japonica cultivar... 325 6e-87
gb|AAT77832.1| putative gag-pol precursor [Oryza sativa (japonic... 322 5e-86
emb|CAE02216.2| OSJNBb0002N06.6 [Oryza sativa (japonica cultivar... 320 2e-85
gb|AAL76007.1| prpol [Zea mays] 319 4e-85
gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19... 319 5e-85
gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprote... 317 2e-84
gb|AAP52932.1| putative retroelement [Oryza sativa (japonica cul... 313 2e-83
ref|NP_914621.1| putative polyprotein [Oryza sativa (japonica cu... 306 4e-81
ref|NP_918456.1| P0697C12.16 [Oryza sativa (japonica cultivar-gr... 306 5e-81
ref|NP_918393.1| putative polyprotein [Oryza sativa (japonica cu... 305 8e-81
ref|NP_917181.1| P0510C12.24 [Oryza sativa (japonica cultivar-gr... 305 1e-80
gb|AAL66756.1| putative prpol [Zea mays] 304 1e-80
emb|CAE04174.2| OSJNBa0029C04.4 [Oryza sativa (japonica cultivar... 304 2e-80
ref|NP_908977.1| putative polyprotein [Oryza sativa (japonica cu... 304 2e-80
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 453 bits (1166), Expect = e-125
Identities = 239/496 (48%), Positives = 320/496 (64%), Gaps = 29/496 (5%)
Query: 331 SPSDASEKISTISFSQEDFRQVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAF 390
+P+ I I+F+ EDF + P DDP+V++ ++ + I +VLVD GSS ++LY++ F
Sbjct: 611 TPTQRRPHIPPITFTDEDFTAIDPSQDDPMVITVEIDKFAIAKVLVDQGSSVDILYWETF 670
Query: 391 SKMGLSEEQLQPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYN 450
KM + E ++QP+ + GF+ +RV +G++ L TTFG K+I IRYL+ NA +SYN
Sbjct: 671 KKMKIPEAEIQPYNEQIVGFSRERVDTKGFIDLYTTFGDDYLSKTINIRYLLVNANTSYN 730
Query: 451 AIIGRPSINLLDAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNV------- 503
++GRPSIN L A VST HL MK+P NG + V D K ARE Y ASLK+
Sbjct: 731 ILLGRPSINRLKAIVSTPHLAMKFPSVNGDIATVHIDQKTARECYVASLKVEPTRRLYTT 790
Query: 504 ---KSSEILG----------------VNLIDLDPREDYQQERIEPVEDLKDIMIGTGPNQ 544
+++E G V L+DLDPR D R+E EDL+ I + +
Sbjct: 791 SAERTTERRGRSTERRSRGRESRRHLVALVDLDPRLD--DPRMEAGEDLQPIFLRDKDRK 848
Query: 545 TIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAINPSVKPVVQKKR 604
T +GTSL+ + + + + L +NADLFAW+ +DMPG+ V H L++ +P+ QKKR
Sbjct: 849 TY-MGTSLKPDDRETIGKTLTKNADLFAWTAADMPGVKSDVITHRLSVYTEARPIAQKKR 907
Query: 605 KMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMACPK 664
K+GEE+RKA EE KL +A FI + Y TWLAN V+VKK++GKWRMCVDYTDLN ACPK
Sbjct: 908 KLGEERRKAAREETDKLIQAGFIQKAHYTTWLANVVMVKKTNGKWRMCVDYTDLNKACPK 967
Query: 665 DPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFG 724
D YPLP ID L+D AAG++ LSF+DAYS YNQ++M D K F T+ N+ YEVM FG
Sbjct: 968 DSYPLPTIDRLVDGAAGHQILSFLDAYSGYNQIQMYHRDREKTAFRTDSDNFFYEVMPFG 1027
Query: 725 LRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMRLN 784
L+NAGAT+QR MD +F IGRN+EVYVDD+VVK+ + QH DLKE+FQ +R+ MRLN
Sbjct: 1028 LKNAGATYQRLMDHVFHDMIGRNVEVYVDDIVVKSDSCEQHVSDLKEVFQALRQYRMRLN 1087
Query: 785 PAKCTFGVHAENFWVF 800
P KC FGV F F
Sbjct: 1088 PEKCAFGVEGGKFLGF 1103
Score = 165 bits (418), Expect = 1e-38
Identities = 90/246 (36%), Positives = 138/246 (55%), Gaps = 38/246 (15%)
Query: 1090 RSDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLAS 1149
+SDS+L+ Q++GEY+ +++ L +Y V+NL F +V RE N RAD L++LA+
Sbjct: 1393 KSDSRLVVGQLTGEYEVRETLLQQYFHFVKNLLNRFKEISFQHVRRENNTRADALSRLAT 1452
Query: 1150 TKRPGNNRTVIQEVVSAPNCEAKEVLSTTQETEGWMAPILKYLT-GSFDPVSEEEKQLVR 1208
K+ G +R+ I ++ P+ +E ++T + WM PI +YLT G DP E+ +L
Sbjct: 1453 LKKKGAHRSAIHVTLAKPSVGTEECMATDTQPN-WMTPIKQYLTDGVCDPHLEKTMKL-- 1509
Query: 1209 KRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVAKLLRAG 1268
+AA++ ++ LY+RG PLL+CLG E+ V+ E+HEG+CG+H R++ AK+LRAG
Sbjct: 1510 -QAARYILIGEDLYRRGYSRPLLKCLGPEQVTYVMTELHEGICGTHSGARTMSAKILRAG 1568
Query: 1269 YYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPWPFHKSGVDIVGPFPPAP*Q 1328
YYWP + DC E+ G+DI+GPF P Q
Sbjct: 1569 YYWPTLQGDCTEY---------------------------------GMDIIGPFTPGKGQ 1595
Query: 1329 LKFLIV 1334
KFL+V
Sbjct: 1596 CKFLLV 1601
Score = 68.6 bits (166), Expect = 2e-09
Identities = 28/64 (43%), Positives = 46/64 (71%)
Query: 1483 VQVLWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWRRENFNEEANEVGIQCTMDMI 1542
++VLW+Y TP STT ETP+++ YG +AM+PVEI P+ RR+ + + N+ + +D+I
Sbjct: 1706 LEVLWAYRCTPQSTTQETPYSLTYGTEAMIPVEIGEPSLRRQTLDLDLNKESLLVGLDLI 1765
Query: 1543 DEIR 1546
+E+R
Sbjct: 1766 NELR 1769
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 357 bits (916), Expect = 2e-96
Identities = 188/456 (41%), Positives = 284/456 (62%), Gaps = 8/456 (1%)
Query: 340 STISFSQEDFRQVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQ 399
+ ISF ED ++ DPLVVS ++ E++RVL+D GSSA+VL+YDAF KM + E++
Sbjct: 756 TVISFGPEDAEGILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDR 815
Query: 400 LQPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPSIN 459
L L GF G +VH G ++L+ FG + +I + V + P YNAI+GR +IN
Sbjct: 816 LTNAGVPLQGFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGRSTIN 875
Query: 460 LLDAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLDPR 519
+ +A + ++ MK P G + VRG+ AR+Y + + GV+++D
Sbjct: 876 IFEAIIHHNYICMKLPGLRGVI-TVRGEQLAARKYELQG------TPSVKGVHVVDQKQG 928
Query: 520 EDYQQERIEPVEDLKDIMIGT-GPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDM 578
E + ++ P K + + P + I IG +LE+ E+ ++++++EN +FAWSP ++
Sbjct: 929 EYIKIQKPIPEGKTKKVQLDEHNPGKFILIGENLEKHIEEEILKVVKENMAVFAWSPDEL 988
Query: 579 PGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLAN 638
G+D + H+LAI KP QK R+M ++++A E+ KL +A+ I E+ +P WLAN
Sbjct: 989 QGVDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIELEKLLKAKVIREVMHPEWLAN 1048
Query: 639 TVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMK 698
VLVKK++GKWRMC+D+TDLN ACPKD +PLP ID L+D AG + +SF+DAYS Y+Q+
Sbjct: 1049 PVLVKKANGKWRMCIDFTDLNKACPKDDFPLPRIDQLVDATAGCELMSFLDAYSGYHQVF 1108
Query: 699 MDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVK 758
M D K F+T Y + M FGL+NAGATF R + + + Q+GRN+E Y+DD+VVK
Sbjct: 1109 MVKEDEEKTSFITPFGTYCFIRMPFGLKNAGATFARLIGKVLAKQLGRNVEAYIDDIVVK 1168
Query: 759 TSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHA 794
+ H +DL+E F+ +RK +++LNP KC FGV A
Sbjct: 1169 SKQAFTHGKDLQETFENLRKCSVKLNPEKCVFGVRA 1204
Score = 181 bits (460), Expect = 1e-43
Identities = 92/245 (37%), Positives = 145/245 (58%), Gaps = 3/245 (1%)
Query: 1090 RSDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLAS 1149
++DS+L+ S ++ K+ ++KYL R F V + RE+N AD LAK A+
Sbjct: 1504 KTDSKLVAGHFSKSFEAKEETMAKYLEEARLNEKHFLGITVKAITREENGEADELAKAAA 1563
Query: 1150 TKRPGNNRTVIQEVVSAPNCEAKEVLSTTQETEGWMAPILKYLTGSFDPVSEEEKQLVRK 1209
T +P N ++++ P+ E KEV +E + W PILKYL + P EEE + ++
Sbjct: 1564 TGQPLENSFF--DIITQPSYEKKEVACIQREGD-WREPILKYLVSAQLPEKEEEAKRIQL 1620
Query: 1210 RAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVAKLLRAGY 1269
+ K+ +V G+LYK G PLL+C+ EE +++E+HEG+CG+H + S+ +K++R G
Sbjct: 1621 MSKKYKVVEGQLYKSGVTAPLLKCVTREEGMKMVVEIHEGLCGAHQAPWSVASKVIRQGI 1680
Query: 1270 YWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPWPFHKSGVDIVGPFPPAP*QL 1329
YWP + +D +++K C CQ+F AP EL + WPF++ G+DIVGP P A L
Sbjct: 1681 YWPTIMKDTEKYIKTCKACQKFGPMTKAPPKELQPIPPVWPFYRWGIDIVGPLPRAKGDL 1740
Query: 1330 KFLIV 1334
+F+IV
Sbjct: 1741 RFVIV 1745
Score = 50.8 bits (120), Expect = 4e-04
Identities = 26/64 (40%), Positives = 40/64 (61%), Gaps = 2/64 (3%)
Query: 1483 VQVLWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWRRENFNEEANEVGIQCTMDMI 1542
+ VLW+ TT +TG TPF +VYG +AM P E+ + R ++ +E G + T++M+
Sbjct: 1851 LSVLWALRTTVVRSTGMTPFRLVYGDEAMTPSEVGAHSPRM--IFDQKDEEGREITLEML 1908
Query: 1543 DEIR 1546
DEIR
Sbjct: 1909 DEIR 1912
>gb|AAK50400.1| Putative retroelement [Oryza sativa]
Length = 1291
Score = 346 bits (888), Expect = 3e-93
Identities = 186/466 (39%), Positives = 280/466 (59%), Gaps = 20/466 (4%)
Query: 342 ISFSQEDFRQVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQLQ 401
ISF ED VI DPLV+S ++ +E++R+LVD GSSA+V++ +A++KMGL + L
Sbjct: 412 ISFGPEDAEGVIFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALT 471
Query: 402 PFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPSINLL 461
P +L GF G+ V V G L FG+ + ++ +I + V + P +YNAI GR ++N
Sbjct: 472 PAPVSLRGFGGEAVQVLGQTLLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKF 531
Query: 462 DAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILG-----VNLIDL 516
+A +L +K P + +V+G L+ + S L V+ ++
Sbjct: 532 EAISHHNYLKLKMPGPTAVI-VVKG------------LQPSATSKGDLAIIHRAVHSVET 578
Query: 517 DPREDYQQ-ERIEPVEDLKDIMIG-TGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWS 574
+P E + + P + + I P + + +G + E ++++++L++N D+FAWS
Sbjct: 579 EPHERLKHMPKPTPHSKMTTVQIDDVDPTKLVSLGGDMGEGELESILEVLKKNIDIFAWS 638
Query: 575 PSDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPT 634
P ++ G+ + HHLA+ P +KP QK RKM ++++A EV+KL A I EI +P
Sbjct: 639 PDEVGGVPANLIMHHLAVKPDIKPRKQKLRKMSADRQEAAKAEVQKLLRAGVIQEINHPE 698
Query: 635 WLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDY 694
WLAN VLV+KS+GKWRMCVD+TDLN ACPKD +PLP ID L+D+ A + +SF+DAYS Y
Sbjct: 699 WLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFPLPRIDQLVDSTARCELMSFLDAYSGY 758
Query: 695 NQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDD 754
+Q+ M+ LD PK F+T + + M FGLRNAGATF + + Q+GRN+E Y+DD
Sbjct: 759 HQIHMNPLDIPKTSFITPFGTFCHLRMPFGLRNAGATFATLVYKVLGKQLGRNVEAYIDD 818
Query: 755 LVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHAENFWVF 800
+VVK+ H+ DL+E F +R A ++LNP KC FGV A N F
Sbjct: 819 IVVKSRKAFDHAIDLQETFDSLRAAGIKLNPEKCVFGVRAGNLLGF 864
>gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532234|ref|NP_920419.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225035|gb|AAL86511.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1722
Score = 342 bits (876), Expect = 8e-92
Identities = 179/453 (39%), Positives = 274/453 (59%), Gaps = 6/453 (1%)
Query: 342 ISFSQEDFRQVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQLQ 401
I F ED V+ DPLV+S ++ +E++R+LVD GSSA+V++ +A++KMGL+ + L
Sbjct: 518 IYFGPEDAEGVMFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLTSQALT 577
Query: 402 PFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPSINLL 461
P +L GF G+ V V G L FG+ + ++ ++ + V + P +YN I GR ++N+
Sbjct: 578 PAPASLRGFGGEAVQVLGQALLLIAFGSGENRREEQVLFDVVDIPYNYNTIFGRATLNMF 637
Query: 462 DAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLDPRED 521
+ +L +K P G + + A + A + V + E+ L R
Sbjct: 638 EVISHHNYLELKMPGPTGVIVVKGLQPSAASKGDLAIINRAVHNVEV------KLHDRPK 691
Query: 522 YQQERIEPVEDLKDIMIGTGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMPGI 581
+ + + +K + P + + +G + + E ++++++ ++N D+FAWSP ++ G+
Sbjct: 692 HAPKPTPHGKIIKVQIDDAVPTKLVSLGGDMGKEEVESILKVPKKNIDIFAWSPDEVGGV 751
Query: 582 DIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVL 641
I + HHLA+ P KP QK RKM ++++A EV+KL A I EI +P WLAN VL
Sbjct: 752 SIVLIMHHLAVKPEAKPRKQKLRKMSADRQEAAKAEVQKLLRAGVIQEIDHPEWLANPVL 811
Query: 642 VKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDL 701
V+KS+GKWRMCVD+TDLN ACPKD +PLP ID L+D+ AG + +SF++AYS Y+Q+ M+
Sbjct: 812 VQKSNGKWRMCVDFTDLNKACPKDDFPLPRIDQLVDSTAGCELMSFLNAYSGYHQIHMNP 871
Query: 702 LDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSA 761
LD PK F+T + + M FGLRNAGATF R + + Q+GRN+E YVDD+VVK
Sbjct: 872 LDIPKTSFITPFDTFCHLRMPFGLRNAGATFARLVYKVLCKQLGRNVEAYVDDIVVKIRK 931
Query: 762 EGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHA 794
H+ DL+E F +R A ++LNP KC FGV A
Sbjct: 932 AFDHAIDLQETFDNLRAAGIKLNPEKCVFGVRA 964
Score = 167 bits (423), Expect = 3e-39
Identities = 87/252 (34%), Positives = 147/252 (57%), Gaps = 8/252 (3%)
Query: 1090 RSDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLAS 1149
R+DS+L+ + ++ K+ + +YL +VR++ F V ++PR QN AD LAK A+
Sbjct: 1217 RTDSKLVAGHVDKSFEAKEEGMKRYLEAVRSMEKCFTGITVEHLPRGQNEEADTLAKSAA 1276
Query: 1150 TKRPGNNRTVIQEVVSAPNC--EAKEVLSTTQETEG-----WMAPILKYLTGSFDPVSEE 1202
P ++ + EV+ AP+ ++ E+++ Q G W P +K+L + P E
Sbjct: 1277 YGGP-HSPGIFFEVLHAPSVPTDSSEIMAIDQVKLGEDPYDWRTPFVKHLETGWLPEDEA 1335
Query: 1203 EKQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVA 1262
E + ++ RA K+ +V+G+LY+ G + PLLR + E + + E+H+G+CG+H + R++ +
Sbjct: 1336 EAKRLQLRATKYKMVSGQLYRSGVLQPLLRYISFAEGEEMAKEIHQGLCGAHQAARTVAS 1395
Query: 1263 KLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPWPFHKSGVDIVGPF 1322
K+ R YWP + + C E +KKC+ CQ +TAP +L + WPF + G+DI+GPF
Sbjct: 1396 KVFRQEVYWPTVLKVCVEQIKKCESCQHHGRSQTAPQYDLQPIAPIWPFARWGLDIIGPF 1455
Query: 1323 PPAP*QLKFLIV 1334
P A KF+IV
Sbjct: 1456 PVARNGYKFVIV 1467
Score = 38.5 bits (88), Expect = 1.8
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1483 VQVLWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWR-RENFNEEANEVGIQ 1536
+ VLW+ T P T +PF ++YG +AM P E+ T + R + EE EV ++
Sbjct: 1573 LSVLWALRTNPTRPTKFSPFMLLYGDEAMTPAELGTNSPRVMFSGGEEGREVSLE 1627
>gb|AAT81681.1| putative retrotransposon protein [Oryza sativa (japonica
cultivar-group)]
Length = 1168
Score = 337 bits (863), Expect = 2e-90
Identities = 178/453 (39%), Positives = 273/453 (59%), Gaps = 13/453 (2%)
Query: 346 QEDFRQVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQLQPFKG 405
QED V DPLV+S ++ +E++R+LVD GSS +V++ +A++KMGL+ + L P
Sbjct: 357 QEDAEGVTFPHQDPLVISAEIAGFEVRRILVDGGSSTDVIFAEAYAKMGLTTQALTPAPT 416
Query: 406 TLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPSINLLDAFV 465
+L GF G+ V V G L FGT + ++ ++ + V + P +YNAI GR ++N +
Sbjct: 417 SLRGFGGEAVQVLGQAQLIVAFGTGENRREEQVLFDVVDIPYNYNAIFGRATLNKFEVIS 476
Query: 466 STKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLDPREDYQQE 525
+L +K +G G++ + + + ++ + V+ ++ +P D +
Sbjct: 477 HHNYLKLKM---SGPAGVI-----VIKGLHPSAASKGDLAIINKAVHNVEAEPH-DRAKH 527
Query: 526 RIEPVEDLKDIMIGTGPNQTIKI----GTSLERAEEKNLIQLLQENADLFAWSPSDMPGI 581
+P K I + IK+ G + E KN++++L++N D+FAW P ++ G+
Sbjct: 528 VPKPAPHGKIIKMQIDDADPIKLVSLGGGDMGEEEAKNILEVLKKNIDIFAWGPDEVGGV 587
Query: 582 DIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVL 641
+ HHLA+ P KP QK KM ++++A EV+KL +A I EI +P WLAN+VL
Sbjct: 588 SADLIMHHLAVKPDAKPRKQKLCKMSADRQEAAKAEVQKLLKAGVIQEIDHPEWLANSVL 647
Query: 642 VKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDL 701
V+KS+GKWRMCVD+TDLN ACPKD +PLP ID L+D+ AG + +SF+DAYS Y+Q++M+
Sbjct: 648 VRKSNGKWRMCVDFTDLNKACPKDDFPLPRIDRLVDSTAGCELMSFLDAYSGYHQIRMNP 707
Query: 702 LDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSA 761
D PK F+T + + M FGLRNAGATF R + + Q+G+N+E YVDD+VVK+
Sbjct: 708 ADIPKTAFITPFGTFCHLRMPFGLRNAGATFARLVYKVLYKQLGQNVEAYVDDIVVKSRK 767
Query: 762 EGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHA 794
H+ DL+E F + A M+LNP KC FGV A
Sbjct: 768 AFDHASDLQETFDNLHAAGMKLNPEKCVFGVRA 800
Score = 47.8 bits (112), Expect = 0.003
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Query: 1090 RSDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLAS 1149
R+DS+L+ + ++ K+ + +YL +VR++ F V ++PR QN +AD LAK A+
Sbjct: 1069 RTDSKLVAGYVDKSFEAKEEGMKRYLDAVRSMEKCFTGITVEHLPRGQNEKADTLAKSAA 1128
Query: 1150 ---TKRPGNNRTVIQEVVSAPN--CEAKEVLS 1176
PG ++ EV+ AP+ ++ EVL+
Sbjct: 1129 CGGLHSPG----ILFEVLYAPSVPMDSLEVLA 1156
>gb|AAP53628.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37534078|ref|NP_921341.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881722|gb|AAM01123.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1292
Score = 332 bits (850), Expect = 8e-89
Identities = 178/451 (39%), Positives = 272/451 (59%), Gaps = 20/451 (4%)
Query: 342 ISFSQEDFRQVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQLQ 401
ISF ED VI DPLV+S ++ +E++R+LVD GSSA+V++ +A++KMGL + L
Sbjct: 345 ISFGPEDAEGVIFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALT 404
Query: 402 PFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPSINLL 461
P +L GF G+ V V G L FG+ + ++ +I + V + P +YNAI GR ++N
Sbjct: 405 PAPVSLRGFGGEAVQVLGQTLLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKF 464
Query: 462 DAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILG-----VNLIDL 516
+A +L +K P + +V+G L+ + S L V+ ++
Sbjct: 465 EAISHHNYLKLKMPGPTAVI-VVKG------------LQPSATSKGDLAIIHRAVHSVET 511
Query: 517 DPREDYQQ-ERIEPVEDLKDIMIG-TGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWS 574
+P E + + P + + I P + + +G + E ++++++L++N D+FAWS
Sbjct: 512 EPHERLKHMPKPTPHSKMTTVQIDDVDPTKLVSLGGDMGEGELESILEVLKKNIDIFAWS 571
Query: 575 PSDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPT 634
P ++ G+ + HHLA+ P +KP QK RKM ++++A EV+KL A I EI +P
Sbjct: 572 PDEVGGVPANLIMHHLAVKPDIKPRKQKLRKMSADRQEAAKAEVQKLLRAGVIQEINHPE 631
Query: 635 WLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDY 694
WLAN VLV+KS+GKWRMCVD+TDLN ACPKD +PLP ID L+D+ A + +SF+DAYS Y
Sbjct: 632 WLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFPLPRIDQLVDSTARCELMSFLDAYSGY 691
Query: 695 NQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDD 754
+Q+ M+ LD PK F+T + + M FGLRNAGATF + + Q+GRN+E Y+DD
Sbjct: 692 HQIHMNPLDIPKTSFITPFGTFCHLRMPFGLRNAGATFATLVYKVLGKQLGRNVEAYIDD 751
Query: 755 LVVKTSAEGQHSEDLKEIFQQVRKANMRLNP 785
+VVK+ H+ DL+E F +R A ++LNP
Sbjct: 752 IVVKSRKAFDHAIDLQETFDSLRAAGIKLNP 782
Score = 69.7 bits (169), Expect = 7e-10
Identities = 42/137 (30%), Positives = 66/137 (47%), Gaps = 40/137 (29%)
Query: 1198 PVSEEEKQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISG 1257
P E E + ++ RA K+ +V+G+LY+ G + PLLRC+ E + + E+H+G+CG+H +
Sbjct: 1064 PRDEAEAKRLQLRATKYKMVSGQLYRSGVLQPLLRCISFAEGEEMAKEIHQGLCGAHQAA 1123
Query: 1258 RSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPWPFHKSGVD 1317
R++ +K + AP WPF + G+D
Sbjct: 1124 RTVASKPI-------------------------------API---------WPFPRWGLD 1143
Query: 1318 IVGPFPPAP*QLKFLIV 1334
I+GPFP A KF IV
Sbjct: 1144 IIGPFPVARNGYKFAIV 1160
Score = 36.2 bits (82), Expect = 9.0
Identities = 13/48 (27%), Positives = 30/48 (62%)
Query: 1090 RSDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQ 1137
R+DS+L+ + ++ K+ ++ +YL +VR++ F V ++PR++
Sbjct: 1020 RTDSKLVAGHVDKSFEAKEERMKRYLEAVRSMEKCFTGITVEHLPRDE 1067
>emb|CAE03952.2| OSJNBb0085H11.1 [Oryza sativa (japonica cultivar-group)]
gi|50923259|ref|XP_471990.1| OSJNBb0085H11.1 [Oryza
sativa (japonica cultivar-group)]
Length = 1605
Score = 325 bits (834), Expect = 6e-87
Identities = 177/453 (39%), Positives = 269/453 (59%), Gaps = 6/453 (1%)
Query: 342 ISFSQEDFRQVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQLQ 401
ISF ED V+ DPLV+S + +E++R+LV GSSA+V++ +A++KMGL + L
Sbjct: 481 ISFGSEDAEGVMFPHQDPLVISAERAGFEVRRILVGRGSSADVIFAEAYAKMGLPTQALT 540
Query: 402 PFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPSINLL 461
P +L GF G+ V V G L G+ + ++ ++ + V + P +YNAI GR ++N
Sbjct: 541 PAPASLRGFGGEAVQVLGQALLLIALGSGENRREEQVLFDVVDIPYNYNAIFGRATLNKF 600
Query: 462 DAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLDPRED 521
+A +L +K P G + +V+G + + L + + E+ V D R
Sbjct: 601 EAISHHNYLKLKMPGLTGVI-VVKG----LQPSAASKGDLAIINREVHNVEAEPYD-RPK 654
Query: 522 YQQERIEPVEDLKDIMIGTGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMPGI 581
+ + + +K + P + + +G + E +++++L++N D+FAWSP ++ G+
Sbjct: 655 HAPKPTPHSKIIKVQIDDANPTKLVSLGDDMGEEEAGSILEVLKKNIDIFAWSPDEVGGV 714
Query: 582 DIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVL 641
+ HHLA+ KP QK RKM ++++AV EV+KL A I EI +P WLAN VL
Sbjct: 715 WTDLIMHHLAVKLDAKPRKQKLRKMSADRQEAVKAEVQKLLRAGVIQEIDHPEWLANPVL 774
Query: 642 VKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDL 701
V+KS+ K RMCVD+TDLN ACPKD +PLP ID L+D+ AG + +SF+DAYS Y+Q+ M+
Sbjct: 775 VRKSTSKKRMCVDFTDLNKACPKDDFPLPRIDQLVDSTAGCELMSFLDAYSGYHQIHMNP 834
Query: 702 LDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSA 761
D PK F+T + + M FGLRN GATF R + + Q+GRN+E YVDD+VVK+
Sbjct: 835 PDIPKTAFITPFGTFCHLRMPFGLRNTGATFARLVYKVLCKQLGRNVEAYVDDIVVKSRK 894
Query: 762 EGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHA 794
H +L+E F +R A ++LNP KC FGV A
Sbjct: 895 AFDHVSNLQETFDNLRAAGIKLNPEKCVFGVRA 927
Score = 72.4 bits (176), Expect = 1e-10
Identities = 41/148 (27%), Positives = 81/148 (54%), Gaps = 8/148 (5%)
Query: 1090 RSDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLAS 1149
R+DS+L+ + ++ K+ + +YL +VR++ F V ++PR +N D LAK A+
Sbjct: 1206 RTDSKLVAGHVDKSFEAKEEGMKRYLEAVRSMEKCFTGITVEHLPRGRNEEGDALAKSAA 1265
Query: 1150 TKRPGNNRTVIQEVVSAPN--CEAKEVLSTTQ-----ETEGWMAPILKYLTGSFDPVSEE 1202
+ P ++ + EV+ AP+ ++ EV++ Q + W P +K+L + P E
Sbjct: 1266 SSGP-HSPGIFFEVLYAPSVPVDSLEVMAIDQVKLSEDPYDWRTPFVKHLETGWLPEDEA 1324
Query: 1203 EKQLVRKRAAKFTIVAGKLYKRGTVTPL 1230
E + ++ RA K+ +V+ + Y+ G + P+
Sbjct: 1325 EAKRLQLRATKYKMVSAQRYRSGPIAPI 1352
>gb|AAT77832.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
Length = 1631
Score = 322 bits (826), Expect = 5e-86
Identities = 174/455 (38%), Positives = 268/455 (58%), Gaps = 26/455 (5%)
Query: 342 ISFSQEDFRQVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQLQ 401
ISF ED V+ DPLV+S ++ +E++R+LVD GSSA+V++ +A++KMGL + L
Sbjct: 534 ISFGPEDAEGVMFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALT 593
Query: 402 PFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPSINLL 461
P +L GF G+ V V G L FG+ + ++ +I + V + P +YNAI GR ++N
Sbjct: 594 PAPASLRGFGGEAVRVLGQALLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKF 653
Query: 462 DAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLDPRED 521
+A +L +K P G G++ + + ++ + + V+ + +P E
Sbjct: 654 EAISHHNYLKLKMP---GPAGVI-----VVKGLQSSAASKSDLAIINRAVHCVQTEPHER 705
Query: 522 YQQE-RIEPVEDLKDIMIGTG-PNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMP 579
+ ++ P + + I P + + +G + E ++++++L++N ++FAWSP +
Sbjct: 706 PKNTPKLTPHGKITKVQIDDADPTKLVSLGDDMGEEEVESMLEVLKKNINIFAWSPDE-- 763
Query: 580 GIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANT 639
P +KP K KM ++++A EV+KL A I EI +P WLAN
Sbjct: 764 --------------PDIKPRKHKLCKMSADRQEAAKAEVQKLLRAGVIQEIDHPEWLANP 809
Query: 640 VLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKM 699
VLV+KS+GKWRMCVD+TDLN ACPKD +PLP ID L+D+ AG + +SF+DAYS Y+Q+ M
Sbjct: 810 VLVRKSNGKWRMCVDFTDLNKACPKDDFPLPRIDQLVDSTAGCELMSFLDAYSGYHQIHM 869
Query: 700 DLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKT 759
+ LD PK F+T + + M FGLRNAG TF R + + Q+GRN+E YVDD+VVK+
Sbjct: 870 NPLDIPKTSFITPFGTFCHLKMPFGLRNAGTTFARLVYKVLGKQLGRNVEAYVDDIVVKS 929
Query: 760 SAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHA 794
H+ DL+E F +R A ++LNP KC FGV A
Sbjct: 930 RKAFDHAIDLQETFDSLRAAGIKLNPEKCVFGVRA 964
Score = 184 bits (467), Expect = 2e-44
Identities = 93/243 (38%), Positives = 148/243 (60%), Gaps = 8/243 (3%)
Query: 1090 RSDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLAS 1149
R+DS+L+ + ++ K+ + KYL +VR++ +F V ++PR QN AD LAK A+
Sbjct: 1187 RTDSKLVAGHVDNSFEAKEEGMKKYLEAVRSMEKYFTGITVEHLPRGQNEEADALAKSAA 1246
Query: 1150 TKRPGNNRTVIQEVVSAPNC--EAKEVLSTTQETEG-----WMAPILKYLTGSFDPVSEE 1202
P ++ + EV+ AP+ ++ EV+ QE G W P +K+L + PV E
Sbjct: 1247 CGGP-HSPGIFFEVLHAPSVPMDSSEVMVIDQEKLGEDPYDWRTPFVKHLQTGWLPVDEA 1305
Query: 1203 EKQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVA 1262
E + ++ RA K+ +V+G+LY+ G + PLLRC+ E + + EVH+G+CGSH + R++V+
Sbjct: 1306 EAKRLQLRATKYKMVSGQLYRSGVLQPLLRCISFAEGEEMAKEVHQGLCGSHQAARTVVS 1365
Query: 1263 KLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPWPFHKSGVDIVGPF 1322
K+ R G YWP + + C E +KKC+ CQR +TAP +L + WPF + G+DI+GPF
Sbjct: 1366 KVFRQGVYWPTVLKVCVEQIKKCESCQRHGRSRTAPQYDLQPIAPIWPFARWGLDIIGPF 1425
Query: 1323 PPA 1325
P A
Sbjct: 1426 PVA 1428
Score = 37.7 bits (86), Expect = 3.1
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 1483 VQVLWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWR-RENFNEEANEVGIQ 1536
+ VLW+ TTP T +PF ++YG +AM P E+ R + EE EV ++
Sbjct: 1527 LSVLWALRTTPTRPTKFSPFMLLYGDEAMTPAELGANLPRVMFSGGEEGREVSLE 1581
>emb|CAE02216.2| OSJNBb0002N06.6 [Oryza sativa (japonica cultivar-group)]
gi|50923345|ref|XP_472033.1| OSJNBb0002N06.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1607
Score = 320 bits (821), Expect = 2e-85
Identities = 176/455 (38%), Positives = 266/455 (57%), Gaps = 21/455 (4%)
Query: 342 ISFSQEDFRQVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQLQ 401
ISF ED V+ DPLV+S ++ +E++R+LVD GSSA+V++ +A++KMGL +
Sbjct: 675 ISFGPEDAEGVMFLHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQAFT 734
Query: 402 PFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPSINLL 461
+L GF G+ V V L FG+ + ++ +I + V + P +YNAI GR ++N
Sbjct: 735 LAPASLRGFGGETVQVLSQALLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKF 794
Query: 462 DAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLDPRE- 520
+A +L +K P G +G++ + + ++ + V+ ++ +P E
Sbjct: 795 EAISHHNYLKLKMP---GPIGVI-----VVKGLQPSAASKGDLAIINRAVHSVETEPHER 846
Query: 521 DYQQERIEPVEDLKDIMI-GTGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMP 579
+ P + + I P + + +G E +++++ SP ++
Sbjct: 847 PKHTPKPTPHGKITKVQIDDADPTKLVSLGGDKGEEEVESILE-----------SPDEVG 895
Query: 580 GIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANT 639
G+ + HHLA+ P +KP QK RKM ++++AV EV+KL A I EI +P WLAN
Sbjct: 896 GVPADLIMHHLAVKPDIKPRKQKLRKMSTDRQEAVKAEVQKLLRAGVIQEIDHPEWLANP 955
Query: 640 VLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKM 699
VLV+KS+GKWRMCVD+TDLN ACPKD +PLP ID L+D+ AG + +SF+DAYS Y+Q+ M
Sbjct: 956 VLVRKSNGKWRMCVDFTDLNKACPKDDFPLPQIDQLVDSTAGCELMSFLDAYSSYHQIHM 1015
Query: 700 DLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKT 759
+LLD PK F+T + + M FGLRNAGATF R + + Q+GRN+E YVDD+VVK+
Sbjct: 1016 NLLDIPKTFFITPFGTFCHLRMPFGLRNAGATFARLVYKVLGKQLGRNVEAYVDDIVVKS 1075
Query: 760 SAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHA 794
+ DL+E F +R A +RLNP KC FGV A
Sbjct: 1076 RKAFNQAIDLQETFDSLRTAGIRLNPEKCVFGVRA 1110
Score = 50.1 bits (118), Expect = 6e-04
Identities = 27/89 (30%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 1090 RSDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLAS 1149
R+DS+L+ + ++ K+ + +YL +VR++ F V ++P++QN AD LAK A+
Sbjct: 1304 RTDSKLVAGHVDKSFEAKEEGMKRYLEAVRSMEKCFTGITVEHLPKDQNEEADALAKSAA 1363
Query: 1150 TKRPGNNRTVIQEVVSAPN--CEAKEVLS 1176
P ++ + EV+ AP+ ++ EV++
Sbjct: 1364 CGGP-HSPGIFFEVLHAPSVPMDSSEVMA 1391
>gb|AAL76007.1| prpol [Zea mays]
Length = 1317
Score = 319 bits (818), Expect = 4e-85
Identities = 174/458 (37%), Positives = 270/458 (57%), Gaps = 8/458 (1%)
Query: 342 ISFSQEDFR-QVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQL 400
I+FSQED + + PH+D +V+S + + + VLVDTGS+A++++ AF +M E+++
Sbjct: 60 ITFSQEDLQLKDYPHND-AMVISCVIKGFLVHNVLVDTGSAADIIFAKAFRQMQEPEDKI 118
Query: 401 QPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPSINL 460
L GF G ++ G +T+ TFG + ++ ++ + + + YNAIIGR ++N
Sbjct: 119 HDATHPLCGFGGRQIVALGKITMSVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGTLNA 178
Query: 461 LDAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLDPRE 520
+A + +L MK P D G + I G + AR S I ++ + +
Sbjct: 179 FEAILHPAYLCMKIPSDQGPIAI-HGSQEAARRAEGNW----TDSKAIHNIDGAEACEQY 233
Query: 521 DYQQERIEPVEDLKDIMIGTG-PNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMP 579
+++E+ + K +++ Q + +G+ L +EK LI+ L N D+FAWS +D+
Sbjct: 234 KFRREKAASADQPKPMLLCEDIAEQKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSANDLC 293
Query: 580 GIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANT 639
G++ V H L ++PS +P Q+ RKM ++K + EV++L A I E+KYP WLANT
Sbjct: 294 GVNRDVIEHSLNVDPSFRPRKQRLRKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLANT 353
Query: 640 VLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKM 699
V+VKK++GKWRMC+D+TDLN ACPKD +PLP ID L+D AA + +S +D YS Y+Q+ M
Sbjct: 354 VMVKKANGKWRMCIDFTDLNKACPKDEFPLPRIDSLVDAAASSELMSLLDCYSGYHQIWM 413
Query: 700 DLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKT 759
D PK F+T Y Y M GL+NAG +F R + +QIGRN+ YVDD++VK+
Sbjct: 414 KKEDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKS 473
Query: 760 SAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHAENF 797
+ + H DL+E F R+A ++LNP KC FGV F
Sbjct: 474 TKQENHIADLQETFASFRQAGLKLNPEKCVFGVKKGKF 511
Score = 176 bits (447), Expect = 4e-42
Identities = 95/249 (38%), Positives = 143/249 (57%), Gaps = 6/249 (2%)
Query: 1090 RSDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLAS 1149
++DSQ+++ I + KD +L KYL VR + A F F V +PR QN ADLLAK A+
Sbjct: 813 KTDSQVVSGHIDKSCKAKDPKLEKYLDMVRRIEASFEGFSVKNIPRGQNEHADLLAKSAA 872
Query: 1150 TKRPGNNRTVIQEVVSAPNCEAKE--VLSTTQE-TEGWMAPILKYLTGSFDPVSEEEKQL 1206
P + V E + AP+ E E VL+ + +E W I+ YL G F E +
Sbjct: 873 QGLPLPS-DVFFETIKAPSVELLERAVLNISPVFSEDWRTEIISYLQGKFLSDDEAYNKR 931
Query: 1207 VRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVAKLLR 1266
+ RA + ++ G+LYK G PLL+CL E ++ E+H G+CGSHI R L+ K+ R
Sbjct: 932 IEARARPYVMIEGELYKHGVCAPLLKCLSRTEGIELMKEIHAGLCGSHIGSRPLLGKVFR 991
Query: 1267 AGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSP-WPFHKSGVDIVGPFPPA 1325
G+YWP+ D E V+KC+ CQ+ + + P++ LT + P WP + G+D++GP PPA
Sbjct: 992 QGFYWPKAASDAAELVQKCEGCQKCARDQKQPSS-LTQLIQPTWPLQRWGLDLLGPLPPA 1050
Query: 1326 P*QLKFLIV 1334
L++++V
Sbjct: 1051 QGNLRYVVV 1059
Score = 39.7 bits (91), Expect = 0.82
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 1483 VQVLWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWRRENFNEEANEVGIQCTMDMI 1542
++V+WS++TT +TG TPF +++G +A+ P + + R E +E D +
Sbjct: 1165 IKVVWSHNTTTSRSTGFTPFKLLFGDEAITPEKAKAGSIRIVASAESDSEAAYSIEKDAL 1224
Query: 1543 DEIR 1546
+ IR
Sbjct: 1225 EGIR 1228
>gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
[Sorghum bicolor]
Length = 1877
Score = 319 bits (817), Expect = 5e-85
Identities = 180/460 (39%), Positives = 263/460 (57%), Gaps = 17/460 (3%)
Query: 342 ISFSQEDFR-QVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQL 400
I+F++ED R + PH D LV++ + W + R+LVD+GSSA++++ F +M LS QL
Sbjct: 620 ITFTEEDLRLESYPHTD-ALVITTNVAGWGVSRILVDSGSSADIIFAGTFDQMKLSRSQL 678
Query: 401 QPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPSINL 460
QP + L GF G ++H G V L +FGT + ++ + + V + YNAI GR +N
Sbjct: 679 QPSESPLIGFGGKQIHALGKVALPVSFGTTENARTEYVTFDVVDLHYPYNAIFGRGFLNK 738
Query: 461 LDAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLDPRE 520
+A +L MK P +G + V G K AR A K +N +D E
Sbjct: 739 FNAAAHMGYLCMKIPALHGVI-TVHGSQKEARNIEKAIYK------SFRNINSVDSTQHE 791
Query: 521 DYQ-------QERIEPVEDLKDIMIGTG-PNQTIKIGTSLERAEEKNLIQLLQENADLFA 572
Q + + E+ K I + P++ + I +L R EE L+ +LQ+N D+FA
Sbjct: 792 ASQPPDMPRGKTNLADQEETKCIPLQEAVPDKKVTISATLSREEELELLDVLQKNQDIFA 851
Query: 573 WSPSDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKY 632
WS +D+ G+ + H L I+P ++P Q++RKM EE+ A EV++L +A+ I E+ Y
Sbjct: 852 WSAADLQGVSRDIIEHSLDIDPRMRPKKQRQRKMSEERTLAAKAEVQRLLDAKVIREVIY 911
Query: 633 PTWLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYS 692
P WLAN VLV K +GK RMC+D+TDLN AC KD +PLP ID +D AAG + S +D +S
Sbjct: 912 PEWLANVVLVPKKNGKMRMCIDFTDLNKACVKDSFPLPRIDTSVDKAAGCQRFSLLDCFS 971
Query: 693 DYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYV 752
Y+Q+ + D K F T Y Y M GL+NAGATF R M + +Q+ RN+ YV
Sbjct: 972 GYHQIWLKKEDEGKASFTTPFGTYCYTRMPEGLKNAGATFSRMMGKVLGSQLQRNIIAYV 1031
Query: 753 DDLVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGV 792
DD+VV + + H +DL+E F +R A ++LNP KC FGV
Sbjct: 1032 DDVVVMSKRKEDHIKDLQETFVNLRSAGLKLNPEKCVFGV 1071
Score = 169 bits (428), Expect = 7e-40
Identities = 94/250 (37%), Positives = 137/250 (54%), Gaps = 8/250 (3%)
Query: 1090 RSDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLAS 1149
++DSQ++ Q+ EY + +L++YL+ VR L F F + Y+PR +N AD LAK A+
Sbjct: 1376 KTDSQVVAGQVEKEYLAHNPELARYLAVVRGLERRFKGFTLQYIPRAENYEADELAKAAA 1435
Query: 1150 TKRPGNNRTVIQEVVSAPNCEA-----KEVLSTTQETEGWMAPILKYLTGSFDPVSEEEK 1204
P T ++V+ P E + VL T E+E W I L G E
Sbjct: 1436 NNTPLPEGT-FHQIVTTPATETLPKAFRSVLLT--ESEDWRQAIADCLKGKTTVDDEATA 1492
Query: 1205 QLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVAKL 1264
+ + RA +T + G LYK+G V PLL+C+ + E + +L E+H G+CGSHI R+L AK
Sbjct: 1493 KRMEARARNYTSIDGILYKKGVVQPLLKCISQSEGRELLREIHSGMCGSHIGPRALSAKA 1552
Query: 1265 LRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPWPFHKSGVDIVGPFPP 1324
LR G+YWP +D E VK C CQ FS ++ P+ + + WP + G+D+VGP P
Sbjct: 1553 LRQGFYWPTHIRDAEEIVKTCKACQTFSPIQSGPSALTQLIPASWPLQRWGMDLVGPMPT 1612
Query: 1325 AP*QLKFLIV 1334
A KF +V
Sbjct: 1613 AQGGNKFAVV 1622
Score = 42.7 bits (99), Expect = 0.096
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 1484 QVLWSYHTTPHSTTGETPFTMVYGADAMLPVEI 1516
+V+WS++TT TG TPF ++YG +AMLP EI
Sbjct: 1729 RVVWSHNTTVSRATGFTPFKLLYGEEAMLPEEI 1761
>gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprotein - maize
retrotransposon Cinful-1
Length = 1317
Score = 317 bits (812), Expect = 2e-84
Identities = 176/460 (38%), Positives = 272/460 (58%), Gaps = 12/460 (2%)
Query: 342 ISFSQEDFR-QVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQL 400
I+FSQED + + PH+D +V+S + + + VLVDTGS+A++++ AF +M E+++
Sbjct: 60 ITFSQEDLQLKDYPHND-AMVISCVIKGFLVHNVLVDTGSAADIIFAKAFRQMQELEDKI 118
Query: 401 QPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPSINL 460
L GF G ++ G +T+ TFG + ++ ++ + + + YNAIIGR ++N
Sbjct: 119 HDATHPLCGFGGRQIVALGKITMSVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGTLNA 178
Query: 461 LDAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLDPRE 520
+A + +L MK P D G + I G + AR + N S+ + N+ + E
Sbjct: 179 FEAILHPAYLCMKMPSDQGPIAI-HGSQEAARR-----AEGNWTDSKAIH-NIDGAEACE 231
Query: 521 DYQ--QERIEPVEDLKDIMIGTG-PNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSD 577
Y+ +E+ + K +++ Q + +G+ L +EK LI+ L N D+FAWS +D
Sbjct: 232 XYKFRREKAASADQPKPMLLCEDIAEQKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSAND 291
Query: 578 MPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLA 637
+ G++ V H L ++PS +P Q+ RKM ++K + EV++L A I E+KYP WLA
Sbjct: 292 LCGVNRDVIEHSLNVDPSFRPRKQRLRKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLA 351
Query: 638 NTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQM 697
NTV+VKK++GKWRMC+D+TDLN ACPKD +PLP ID L+D A + +S +D YS Y+Q+
Sbjct: 352 NTVMVKKANGKWRMCIDFTDLNKACPKDEFPLPRIDSLVDATASSELMSLLDCYSGYHQI 411
Query: 698 KMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVV 757
M D PK F+T Y Y M GL+NAG +F R + +QIGRN+ YVDD++V
Sbjct: 412 WMKREDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIV 471
Query: 758 KTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHAENF 797
K++ + H DL+E F R+A ++LNP KC FGV F
Sbjct: 472 KSTKQENHIADLQETFASFRQAGLKLNPEKCVFGVKKGKF 511
Score = 176 bits (447), Expect = 4e-42
Identities = 95/249 (38%), Positives = 143/249 (57%), Gaps = 6/249 (2%)
Query: 1090 RSDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLAS 1149
++DSQ+++ I + KD +L KYL VR + A F F V +PR QN ADLLAK A+
Sbjct: 813 KTDSQVVSGHIDKSCKAKDPKLEKYLDMVRRVEASFEGFSVKNIPRGQNEHADLLAKSAA 872
Query: 1150 TKRPGNNRTVIQEVVSAPNCEAKE--VLSTTQE-TEGWMAPILKYLTGSFDPVSEEEKQL 1206
P + V E + AP+ E E VL+ + +E W I+ YL G F E +
Sbjct: 873 QGLPLPS-DVFFETIKAPSVELLERAVLNISPVYSEDWRTEIISYLQGKFLSDDEAYNRR 931
Query: 1207 VRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVAKLLR 1266
+ RA + ++ G+LYK G PLL+CL E ++ E+H G+CGSHI R L+ K+ R
Sbjct: 932 IEARARPYVMIEGELYKHGVCAPLLKCLSRTEGIELMKEIHAGLCGSHIGSRPLLGKIFR 991
Query: 1267 AGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSP-WPFHKSGVDIVGPFPPA 1325
G+YWP+ D E V+KC+ CQ+ + + P++ LT + P WP + G+D++GP PPA
Sbjct: 992 QGFYWPKAASDAAELVQKCEGCQKCARDQKQPSS-LTQLIQPIWPLQRWGLDLLGPLPPA 1050
Query: 1326 P*QLKFLIV 1334
L++++V
Sbjct: 1051 QGNLRYVVV 1059
Score = 40.0 bits (92), Expect = 0.62
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 1484 QVLWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWRRENFNEEANEVGIQCTMDMID 1543
+V+WS++TT +TG TPF +++G +A+ P E T + R +E D ++
Sbjct: 1166 KVVWSHNTTTSRSTGFTPFKLLFGDEAITPEEAKTGSIRVVASAASGSEADYSVEKDALE 1225
Query: 1544 EIR 1546
IR
Sbjct: 1226 GIR 1228
>gb|AAP52932.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532686|ref|NP_920645.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22725940|gb|AAN04950.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881715|gb|AAM01116.1| Putative retroelement [Oryza
sativa]
Length = 1111
Score = 313 bits (803), Expect = 2e-83
Identities = 175/453 (38%), Positives = 257/453 (56%), Gaps = 9/453 (1%)
Query: 342 ISFSQEDFRQVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQLQ 401
ISF ED V+ D L VS ++ +E++ +L+D GSSA+V++ ++KMGL L
Sbjct: 554 ISFGLEDTEGVLFPHQDMLFVSAEMAGFEVRCILIDGGSSADVMFAGTYAKMGLPTLALS 613
Query: 402 PFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPSINLL 461
+L GF G+ V V G +K FG+++ ++ +I + + + P +YNAI R ++
Sbjct: 614 QAPTSLRGFGGEAVQVLGQALIKVAFGSQENRREEEILFDIVDIPYNYNAIFCRGTLTKF 673
Query: 462 DAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLDPRED 521
+A +L +K P G + +V+G A V + E+ G P+
Sbjct: 674 EAVSHHNYLKLKMPGPAGVI-VVKGSQPSA--VAATPFDREVHTLEVEGQEKAKSIPKPT 730
Query: 522 YQQERIEPVEDLKDIMIGTGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMPGI 581
+ I+ D D P + I +G L E ++ +L++N D+FAW D+ G+
Sbjct: 731 PHGKVIQRQIDDFD------PAKVISLGGDLSEQEVDGILAVLKKNIDIFAWGLDDVGGV 784
Query: 582 DIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVL 641
+ H+LA+ P K QK RKM ++++A EV KL A I EI +P WLAN V
Sbjct: 785 SPYLIMHYLAVKPEAKTKKQKLRKMSADRQEAAKVEVNKLLRAGVIQEIDHPEWLANPVP 844
Query: 642 VKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDL 701
+KKS+GKWRMCVD+TDLN CPKD +PLP ID L+D+ AG K +SF+DAYS Y+Q+ M+
Sbjct: 845 MKKSNGKWRMCVDFTDLNKMCPKDDFPLPRIDQLVDSTAGCKLISFLDAYSGYHQIHMNP 904
Query: 702 LDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSA 761
D P F+ + + MSFGLRNAG TF R + + Q+GRN+E YVD++VVK+
Sbjct: 905 TDIPMTAFIMPFGTFCHLRMSFGLRNAGVTFTRLVYKVLGLQLGRNVEAYVDEIVVKSCK 964
Query: 762 EGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHA 794
H+ DL+E F +R A M+LNP KC FGVHA
Sbjct: 965 AFDHASDLQETFNNLRTAGMKLNPEKCVFGVHA 997
>ref|NP_914621.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2030
Score = 306 bits (784), Expect = 4e-81
Identities = 181/459 (39%), Positives = 253/459 (54%), Gaps = 32/459 (6%)
Query: 342 ISFSQEDFRQVIPHDDD-PLVVSFQLLNWEIKRVLVDTGSSANVLY---YDAFSKMGLSE 397
++F Q D I +VVS + N ++ RVL+D G++ N+L +DA G+
Sbjct: 594 LTFDQTDHPPCIARGGQVAMVVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVL 653
Query: 398 EQLQPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPS 457
+ QP G G T G++ L TFG ++ ++ + V + YNA++GRP+
Sbjct: 654 QPSQPIIGVTPGHTWPL----GHIDLPVTFGGSANFRTERVNFDVADLSLPYNAVLGRPA 709
Query: 458 INLLDAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLD 517
+ A V +L MK P +G + VRGD K+A L ++
Sbjct: 710 LVKFMAAVHYAYLQMKMPGPSGPIS-VRGDLKVA---------------------LACME 747
Query: 518 PREDYQQERIEPV--EDLKDIMIGTGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSP 575
R D+ +P ++ T P Q I + EE L+ L+ NAD+FAW P
Sbjct: 748 QRADHLAAATKPEGGDERLGASAPTAPRQRIATCDEVPVKEEDALVSFLRANADVFAWRP 807
Query: 576 SDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTW 635
+DMPG+ +V H LA+ P +PV QK R+ E++ + EEV +L EA FI E+ +P W
Sbjct: 808 ADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEW 867
Query: 636 LANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYN 695
LAN V+V K++GK RMC+DYTDLN ACPKDPYPLP ID ++D+ AG L F+DAYS Y+
Sbjct: 868 LANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYH 927
Query: 696 QMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDL 755
Q++M D K F+T Y Y M FGL+NAG TFQR+ +QIGRN+E YVDDL
Sbjct: 928 QIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRATRISLGSQIGRNVEAYVDDL 987
Query: 756 VVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHA 794
VVKT + DL E F+ +R A ++LNP KC FGV A
Sbjct: 988 VVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPA 1026
Score = 147 bits (371), Expect = 3e-33
Identities = 86/265 (32%), Positives = 135/265 (50%), Gaps = 22/265 (8%)
Query: 1092 DSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLASTK 1151
DSQL+ NQ+ EY+ D Q+ Y+ VR + F+ E+ +VPR N+ AD L++LAS++
Sbjct: 1506 DSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNMIADELSRLASSR 1565
Query: 1152 R---PGNNRTVIQEV---------VSAPNCEAKEVLSTTQETEG----------WMAPIL 1189
PG + + AP+ + V EG W++ I
Sbjct: 1566 AQTPPGAFEERLTQPSARPDPLGETDAPDRPPRPVGVQASGPEGSAPSSLRLIAWISEIQ 1625
Query: 1190 KYLTGSFDPVSEEEKQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEG 1249
YLT P E + V++ + ++ +V G LY+R LL+C+ +E+ +L ++HEG
Sbjct: 1626 TYLTDKTLPEDREGSERVQRISKRYVLVEGTLYRRAANGILLKCIPKEQGVELLADIHEG 1685
Query: 1250 VCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPW 1309
CG+H + R+LV K R G+YWP D + V++C CQ + + PA L + W
Sbjct: 1686 ECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQIHQPAQALQIIPLSW 1745
Query: 1310 PFHKSGVDIVGPFPPAP*QLKFLIV 1334
PF G+DI+GPF AP ++L V
Sbjct: 1746 PFAAWGLDILGPFKRAPGGFEYLYV 1770
Score = 52.0 bits (123), Expect = 2e-04
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 1447 CFKQISLPKKKKKFSISYSRLMNGPKIKVFCLK----NS*VQ----VLWSYHTTPHSTTG 1498
CF + P+ + + + ++ G K K F + +S ++ VLW+ TTP TG
Sbjct: 1834 CFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATG 1893
Query: 1499 ETPFTMVYGADAMLPVEIDTPTWRRENFNEEANEVGIQCTMDMIDEIR 1546
ETPF +VYGA+A+LP E+ + R + E + + +D ++E R
Sbjct: 1894 ETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYLEERR 1941
>ref|NP_918456.1| P0697C12.16 [Oryza sativa (japonica cultivar-group)]
Length = 2029
Score = 306 bits (783), Expect = 5e-81
Identities = 182/459 (39%), Positives = 252/459 (54%), Gaps = 32/459 (6%)
Query: 342 ISFSQEDFRQVIPHDDD-PLVVSFQLLNWEIKRVLVDTGSSANVLY---YDAFSKMGLSE 397
++F Q D I +VVS + N ++ RVL+D G+S N+L +DA G+
Sbjct: 593 LTFDQTDHPPCIARGGQVAMVVSPTICNVKLGRVLIDGGASLNILSPAAFDAIKAPGMVL 652
Query: 398 EQLQPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPS 457
+ QP G G T G++ L TFG ++ ++ + V + YNA++GRP+
Sbjct: 653 QPSQPIIGVTPGHTWPL----GHIDLPVTFGGPANFRTERVSFDVADLSLPYNAVLGRPA 708
Query: 458 INLLDAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLD 517
+ A V +L MK P G + VRGD K+A L ++
Sbjct: 709 LVKFMAAVHYAYLQMKMPGPGGPIS-VRGDLKVA---------------------LACME 746
Query: 518 PREDYQQERIEPV--EDLKDIMIGTGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSP 575
R D+ +P ++ T P Q I + EE L+ L+ NAD+FAW P
Sbjct: 747 QRTDHLAAATKPEGGDERLGTSAPTAPRQRIATCDEVPVKEEDALVSFLRANADVFAWRP 806
Query: 576 SDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTW 635
+DMPG+ +V H LA+ P +PV QK R+ E++ + EEV +L EA FI E+ +P W
Sbjct: 807 ADMPGVPREVIEHRLAVRPDARPVRQKVRRQAPERQAFICEEVARLLEAGFIREVIHPEW 866
Query: 636 LANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYN 695
LAN V+V K++GK RMC+DYTDLN ACPKDPYPLP ID ++D+ AG L F+DAYS Y+
Sbjct: 867 LANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYH 926
Query: 696 QMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDL 755
Q++M D K F+T Y Y M FGL+NAG TFQR+ +QIGRN+E YVDDL
Sbjct: 927 QIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDL 986
Query: 756 VVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHA 794
VVKT + DL E F+ +R A ++LNP KC FGV A
Sbjct: 987 VVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPA 1025
Score = 147 bits (372), Expect = 2e-33
Identities = 86/265 (32%), Positives = 135/265 (50%), Gaps = 22/265 (8%)
Query: 1092 DSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLASTK 1151
DSQL+ NQ+ EY+ D Q+ Y+ VR + F+ E+ +VPR N+ AD L++LAS++
Sbjct: 1505 DSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNMDADELSRLASSR 1564
Query: 1152 R---PGNNRTVIQEV---------VSAPNCEAKEVLSTTQETEG----------WMAPIL 1189
PG + + AP+ + V EG W++ I
Sbjct: 1565 AQTPPGAFEERLTQPSARPDPLGETDAPDRPPRPVGVQASGPEGSAPSSLRLIAWISEIQ 1624
Query: 1190 KYLTGSFDPVSEEEKQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEG 1249
YLT P E + V++ + ++ +V G LY+R LL+C+ +E+ +L ++HEG
Sbjct: 1625 TYLTDKTLPEDREGSERVQRISKRYVLVEGTLYRRAANGILLKCIPQEQGVELLADIHEG 1684
Query: 1250 VCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPW 1309
CG+H + R+LV K R G+YWP D + V++C CQ + + PA L + W
Sbjct: 1685 ECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQIHQPAQALQIIPLSW 1744
Query: 1310 PFHKSGVDIVGPFPPAP*QLKFLIV 1334
PF G+DI+GPF AP ++L V
Sbjct: 1745 PFAVWGLDILGPFKRAPGGFEYLYV 1769
Score = 52.0 bits (123), Expect = 2e-04
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 1447 CFKQISLPKKKKKFSISYSRLMNGPKIKVFCLK----NS*VQ----VLWSYHTTPHSTTG 1498
CF + P+ + + + ++ G K K F + +S ++ VLW+ TTP TG
Sbjct: 1833 CFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATG 1892
Query: 1499 ETPFTMVYGADAMLPVEIDTPTWRRENFNEEANEVGIQCTMDMIDEIR 1546
ETPF +VYGA+A+LP E+ + R + E + + +D ++E R
Sbjct: 1893 ETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYLEERR 1940
>ref|NP_918393.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2030
Score = 305 bits (781), Expect = 8e-81
Identities = 184/461 (39%), Positives = 252/461 (53%), Gaps = 36/461 (7%)
Query: 342 ISFSQEDFRQVIPHDDD-PLVVSFQLLNWEIKRVLVDTGSSANVLY---YDAFSKMGLSE 397
++F Q D + +VVS + N ++ RVL+D G++ NVL +DA G+
Sbjct: 594 LTFDQTDHPPCVARGGQIAMVVSPTICNVKLGRVLIDGGAALNVLSPAAFDAIKAPGMVL 653
Query: 398 EQLQPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPS 457
QP G G T G++ L TFG ++ ++ + V + YNA++GRP+
Sbjct: 654 RPSQPIIGVTPGHTWPL----GHIDLPVTFGGSANFRTERVNFDVADLSLPYNAVLGRPA 709
Query: 458 INLLDAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLD 517
+ A V +L MK P G + VRGD L V L ++
Sbjct: 710 LVKFMAAVHYAYLQMKMPGPGGPIS-VRGD---------------------LKVTLACME 747
Query: 518 PREDYQQERIEPVEDLKDIMIGTG----PNQTIKIGTSLERAEEKNLIQLLQENADLFAW 573
R D+ +P + D +GT P Q I + EE L+ L+ NAD+FAW
Sbjct: 748 QRADHLAAATKP--EGGDESLGTSAPIAPRQRIATCDEVPVKEEDALVSFLRANADVFAW 805
Query: 574 SPSDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYP 633
P+DMPG+ KV H LA+ P +PV QK R+ E++ + EEV +L EA FI E+ +P
Sbjct: 806 RPADMPGVPRKVIEHRLAVRPGARPVRQKVRRKAPERQAFIREEVARLLEAGFIREVIHP 865
Query: 634 TWLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSD 693
WLAN V+V K++GK RMC+DYTDLN ACPKDPYPLP ID ++D+ AG L F+DAYS
Sbjct: 866 EWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGSDLLCFLDAYSG 925
Query: 694 YNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVD 753
Y+Q++M D K F+T Y Y M FGL+NAG TFQR+ +QIGRN+E YVD
Sbjct: 926 YHQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVD 985
Query: 754 DLVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHA 794
DLVVKT + DL E F+ +R A ++LNP KC FGV A
Sbjct: 986 DLVVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPA 1026
Score = 148 bits (373), Expect = 2e-33
Identities = 86/265 (32%), Positives = 135/265 (50%), Gaps = 22/265 (8%)
Query: 1092 DSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLASTK 1151
DSQL+ NQ+ EY+ D Q+ Y+ VR + F+ E+ +VPR N+ AD L++LAS++
Sbjct: 1506 DSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNMIADELSRLASSR 1565
Query: 1152 R---PGNNRTVIQEV---------VSAPNCEAKEVLSTTQETEG----------WMAPIL 1189
PG + + AP+ + V EG W++ I
Sbjct: 1566 AQTPPGAFEERLTQPSARPDPLGETDAPDRPPRPVGVQASGPEGSAPSSLRLIAWISEIQ 1625
Query: 1190 KYLTGSFDPVSEEEKQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEG 1249
YLT P E + V++ + ++ +V G LY+R LL+C+ +E+ +L ++HEG
Sbjct: 1626 TYLTDKTLPEDREGSERVQRISKRYVLVEGTLYRRAANGILLKCIPQEQGVELLADIHEG 1685
Query: 1250 VCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPW 1309
CG+H + R+LV K R G+YWP D + V++C CQ + + PA L + W
Sbjct: 1686 ECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQINQPAQALQIIPLSW 1745
Query: 1310 PFHKSGVDIVGPFPPAP*QLKFLIV 1334
PF G+DI+GPF AP ++L V
Sbjct: 1746 PFAVWGLDILGPFKRAPGGFEYLYV 1770
Score = 53.1 bits (126), Expect = 7e-05
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 1447 CFKQISLPKKKKKFSISYSRLMNGPKIKVFCLK----NS*VQ----VLWSYHTTPHSTTG 1498
CF + PK + + + ++ G K K F + +S ++ VLW+ TTP TG
Sbjct: 1834 CFASPAHPKSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATG 1893
Query: 1499 ETPFTMVYGADAMLPVEIDTPTWRRENFNEEANEVGIQCTMDMIDEIR 1546
ETPF +VYGA+A+LP E+ + R + E + + +D ++E R
Sbjct: 1894 ETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYLEERR 1941
>ref|NP_917181.1| P0510C12.24 [Oryza sativa (japonica cultivar-group)]
Length = 2030
Score = 305 bits (780), Expect = 1e-80
Identities = 180/459 (39%), Positives = 251/459 (54%), Gaps = 32/459 (6%)
Query: 342 ISFSQEDFRQVIPHDDD-PLVVSFQLLNWEIKRVLVDTGSSANVLY---YDAFSKMGLSE 397
++F Q D + +VVS + N ++ RVL+D G++ N+L +DA G+
Sbjct: 594 LTFDQTDHPPCVARGGQIAMVVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVL 653
Query: 398 EQLQPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPS 457
QP G G T G++ L TFG ++ ++ + V + YNA++GRP+
Sbjct: 654 RPSQPIIGVTPGHTWPL----GHIDLPVTFGGSANFRTERVNFDVADLSLPYNAVLGRPA 709
Query: 458 INLLDAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLD 517
+ A V +L MK P G + VRGD K+A L ++
Sbjct: 710 LVKFMAAVHYAYLQMKMPGPGGPIS-VRGDLKVA---------------------LACME 747
Query: 518 PREDYQQERIEPV--EDLKDIMIGTGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSP 575
R D+ +P ++ T P Q I + EE L+ L+ NAD+FAW P
Sbjct: 748 QRADHLAAATKPEGGDERLGTSAPTAPRQRIATCDEVPVKEEDALVSFLRANADVFAWRP 807
Query: 576 SDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTW 635
+DMPG+ +V H LA+ P +PV QK R+ E++ + EEV +L EA FI E+ +P W
Sbjct: 808 ADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEW 867
Query: 636 LANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYN 695
LAN V+V K++GK RMC+DYTDLN ACPKDPYPLP ID ++D+ AG L F+DAYS Y+
Sbjct: 868 LANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYH 927
Query: 696 QMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDL 755
Q++M D K F+T Y Y M FGL+NAG TFQR+ +QIGRN+E YVDDL
Sbjct: 928 QIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDL 987
Query: 756 VVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHA 794
VVKT + DL E F+ +R A ++LNP KC FGV A
Sbjct: 988 VVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPA 1026
Score = 147 bits (371), Expect = 3e-33
Identities = 86/265 (32%), Positives = 135/265 (50%), Gaps = 22/265 (8%)
Query: 1092 DSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLASTK 1151
DSQL+ NQ+ EY+ D Q+ Y+ VR + F+ E+ +VPR N+ AD L++LAS++
Sbjct: 1506 DSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNMIADELSRLASSR 1565
Query: 1152 R---PGNNRTVIQEV---------VSAPNCEAKEVLSTTQETEG----------WMAPIL 1189
PG + + AP+ + V EG W++ I
Sbjct: 1566 AQTPPGAFEERLTQPSARPDPLGETDAPDRPPRPVGVQASGPEGSAPSSLRLIAWISEIQ 1625
Query: 1190 KYLTGSFDPVSEEEKQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEG 1249
YLT P E + V++ + ++ +V G LY+R LL+C+ +E+ +L ++HEG
Sbjct: 1626 TYLTDKTLPEDREGSERVQRISKRYVLVEGTLYRRAANGILLKCIPQEQGVELLADIHEG 1685
Query: 1250 VCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPW 1309
CG+H + R+LV K R G+YWP D + V++C CQ + + PA L + W
Sbjct: 1686 ECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQIHQPAQALQIIPLSW 1745
Query: 1310 PFHKSGVDIVGPFPPAP*QLKFLIV 1334
PF G+DI+GPF AP ++L V
Sbjct: 1746 PFAVWGLDILGPFKRAPGGFEYLYV 1770
Score = 52.0 bits (123), Expect = 2e-04
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 1447 CFKQISLPKKKKKFSISYSRLMNGPKIKVFCLK----NS*VQ----VLWSYHTTPHSTTG 1498
CF + P+ + + + ++ G K K F + +S ++ VLW+ TTP TG
Sbjct: 1834 CFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATG 1893
Query: 1499 ETPFTMVYGADAMLPVEIDTPTWRRENFNEEANEVGIQCTMDMIDEIR 1546
ETPF +VYGA+A+LP E+ + R + E + + +D ++E R
Sbjct: 1894 ETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYLEERR 1941
>gb|AAL66756.1| putative prpol [Zea mays]
Length = 969
Score = 304 bits (779), Expect = 1e-80
Identities = 171/458 (37%), Positives = 264/458 (57%), Gaps = 8/458 (1%)
Query: 342 ISFSQEDFR-QVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQL 400
I+FSQED + + PH+D +V+S + + + VLVDTGS+A+++ AF +M E+++
Sbjct: 254 ITFSQEDLQLKDYPHND-AMVISCIIKGFLVHNVLVDTGSAADIIVAKAFRQMQEPEDKI 312
Query: 401 QPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPSINL 460
L GF G ++ + + TFG + ++ ++ + + + YNAIIG ++N
Sbjct: 313 HDSTHPLCGFGGRQIVALDKIMMPVTFGFVNNTRTEQVVFDIVDMEYPYNAIIGHGTLNA 372
Query: 461 LDAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLDPRE 520
+A + +L MK P D G + I G + AR+ S I ++ + +
Sbjct: 373 FEAILHPAYLYMKIPSDQGPIAI-HGSQEAARKAEGNW----TDSKAIHNIDGAEACEQY 427
Query: 521 DYQQERIEPVEDLKDIMIGTG-PNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMP 579
Y++E+ + K +++ Q + +G+ L +EK L + L N D+FAWS +D+
Sbjct: 428 KYRREKAASTDQPKLMLLCEDIAEQKVLLGSQLTEEQEKTLTRFLFNNKDVFAWSANDLC 487
Query: 580 GIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANT 639
G++ V H L ++PS +P Q+ RKM ++K K EV++L A I E+KYP WLANT
Sbjct: 488 GVNRDVNEHSLNVDPSFRPRKQRLRKMSDDKAKGARNEVKRLLSAGVIREVKYPEWLANT 547
Query: 640 VLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKM 699
V+VKK++GKWRMC+D+TDLN ACPKD +PL ID L+D AA + +S +D YS Y+Q+ M
Sbjct: 548 VMVKKANGKWRMCIDFTDLNKACPKDEFPLSRIDSLVDAAASSELMSLLDCYSGYHQIWM 607
Query: 700 DLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKT 759
D PK F+T Y Y M GL+NAG +F R + +QIGRN+ YVDD++VK+
Sbjct: 608 KKEDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLHSQIGRNVLTYVDDIIVKS 667
Query: 760 SAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHAENF 797
+ H DL+E F R+A ++LNP KC FGV F
Sbjct: 668 MKQENHIADLQETFANFRQAVLKLNPEKCVFGVKKGKF 705
>emb|CAE04174.2| OSJNBa0029C04.4 [Oryza sativa (japonica cultivar-group)]
Length = 2027
Score = 304 bits (778), Expect = 2e-80
Identities = 182/459 (39%), Positives = 253/459 (54%), Gaps = 35/459 (7%)
Query: 342 ISFSQEDFRQVIPHDDD-PLVVSFQLLNWEIKRVLVDTGSSANVLY---YDAFSKMGLSE 397
++F Q D I +VVS + N ++ RVL+D G++ N+L +DA G+
Sbjct: 594 LTFDQTDHPPCIARGGQVAMVVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVL 653
Query: 398 EQLQPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPS 457
+ QP G G T G+V L TFG ++ ++ + V + YNA++GRP+
Sbjct: 654 QPSQPIIGVTPGHTWPL----GHVDLPVTFGGPANFRTERVSFDVADLSLPYNAVLGRPA 709
Query: 458 INLLDAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLD 517
+ A V +L MK P G + VRGD K+A L ++
Sbjct: 710 LVKFMAAVHYAYLQMKMPGPGGPIS-VRGDLKVA---------------------LACME 747
Query: 518 PREDYQQERIEPV--EDLKDIMIGTGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSP 575
R D+ +P ++ T P Q I + + A E L+ L+ NAD+FAW P
Sbjct: 748 QRADHLAAATKPEGGDERLGTSAPTAPRQRI---ATCDEAPEDALVSFLRANADVFAWRP 804
Query: 576 SDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTW 635
+DMPG+ +V H LA+ P +PV QK R+ E++ + EEV +L EA FI E+ +P W
Sbjct: 805 ADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEW 864
Query: 636 LANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYN 695
LAN V+V K++GK RMC+DYTDLN ACPKDPYPLP ID ++D+ AG L F+DAYS Y+
Sbjct: 865 LANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYH 924
Query: 696 QMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDL 755
Q++M D K F+T Y Y M FGL+NAG TFQR+ +QIGRN+E YVDDL
Sbjct: 925 QIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDL 984
Query: 756 VVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHA 794
VVKT + DL E F+ +R A ++LNP KC FGV A
Sbjct: 985 VVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPA 1023
Score = 145 bits (366), Expect = 1e-32
Identities = 85/265 (32%), Positives = 134/265 (50%), Gaps = 22/265 (8%)
Query: 1092 DSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLASTK 1151
DSQL+ NQ+ EY+ D Q+ Y+ VR + F+ E+ +VPR N+ AD L++LAS++
Sbjct: 1503 DSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNMIADELSRLASSR 1562
Query: 1152 R---PGNNRTVIQEV---------VSAPNCEAKEVLSTTQETEG----------WMAPIL 1189
PG + + AP+ + V EG W++ I
Sbjct: 1563 AQTPPGAFEERLTQPSARPDPLGETDAPDRPPRPVGVQVSGPEGSAPSSLRLIAWISEIQ 1622
Query: 1190 KYLTGSFDPVSEEEKQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEG 1249
YL P E + V++ + ++ +V G LY+R LL+C+ +E+ +L ++HEG
Sbjct: 1623 TYLADKTLPEDREGSERVQRISKRYVLVEGTLYRRAANGILLKCIPQEQGVELLADIHEG 1682
Query: 1250 VCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPW 1309
CG+H + R+LV K R G+YWP D + V++C CQ + + PA L + W
Sbjct: 1683 ECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQIHQPAQALQIIPLSW 1742
Query: 1310 PFHKSGVDIVGPFPPAP*QLKFLIV 1334
PF G+DI+GPF AP ++L V
Sbjct: 1743 PFAVWGLDILGPFKRAPGGFEYLYV 1767
Score = 52.0 bits (123), Expect = 2e-04
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 1447 CFKQISLPKKKKKFSISYSRLMNGPKIKVFCLK----NS*VQ----VLWSYHTTPHSTTG 1498
CF + P+ + + + ++ G K K F + +S ++ VLW+ TTP TG
Sbjct: 1831 CFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATG 1890
Query: 1499 ETPFTMVYGADAMLPVEIDTPTWRRENFNEEANEVGIQCTMDMIDEIR 1546
ETPF +VYGA+A+LP E+ + R + E + + +D ++E R
Sbjct: 1891 ETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYLEERR 1938
>ref|NP_908977.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2030
Score = 304 bits (778), Expect = 2e-80
Identities = 179/459 (38%), Positives = 251/459 (53%), Gaps = 32/459 (6%)
Query: 342 ISFSQEDFRQVIPHDDD-PLVVSFQLLNWEIKRVLVDTGSSANVLY---YDAFSKMGLSE 397
++F Q D + +VVS + N ++ RVL+D G++ N+L +DA G+
Sbjct: 594 LTFDQTDHPPCVARGGQIAMVVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVL 653
Query: 398 EQLQPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPS 457
+ QP G G T G++ L TFG ++ ++ + V + YNA++GRP+
Sbjct: 654 QPSQPIIGVTPGHTWPL----GHIDLPVTFGGSANFRTERVNFDVADLSLPYNAVLGRPA 709
Query: 458 INLLDAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLD 517
+ A V +L MK P G + I RGD K+A L ++
Sbjct: 710 LVKFMAAVHYAYLQMKMPGPGGPISI-RGDLKVA---------------------LACME 747
Query: 518 PREDYQQERIEPV--EDLKDIMIGTGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSP 575
R D+ +P ++ T P Q I + EE L+ L+ N D+FAW P
Sbjct: 748 QRADHLAAATKPEGGDERLGTSAPTAPRQRIATCDEVPVKEEDALVSFLRANTDVFAWRP 807
Query: 576 SDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTW 635
+DMPG+ +V H LA+ P +PV QK R+ E++ + EEV +L EA FI E+ +P W
Sbjct: 808 ADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEW 867
Query: 636 LANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYN 695
LAN V+V K++GK RMC+DYTDLN ACPKDPYPLP ID ++D+ AG L F+DAYS Y+
Sbjct: 868 LANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYH 927
Query: 696 QMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDL 755
Q++M D K F+T Y Y M FGL+NAG TFQR+ +QIGRN+E YVDDL
Sbjct: 928 QIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDL 987
Query: 756 VVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHA 794
VVKT + DL E F+ +R A ++LNP KC FGV A
Sbjct: 988 VVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPA 1026
Score = 147 bits (371), Expect = 3e-33
Identities = 86/265 (32%), Positives = 135/265 (50%), Gaps = 22/265 (8%)
Query: 1092 DSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLASTK 1151
DSQL+ NQ+ EY+ D Q+ Y+ VR + F+ E+ +VPR N+ AD L++LAS++
Sbjct: 1506 DSQLVVNQVCKEYRCSDPQMDAYVHQVRRMERHFDGIELRHVPRRDNMIADELSRLASSR 1565
Query: 1152 R---PGNNRTVIQEV---------VSAPNCEAKEVLSTTQETEG----------WMAPIL 1189
PG + + AP+ + V EG W++ I
Sbjct: 1566 AQTPPGAFEERLTQPSARPDPLGETDAPDRPPRPVGVLASGPEGSAPSSLRLIAWISEIQ 1625
Query: 1190 KYLTGSFDPVSEEEKQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEG 1249
YLT P E + V++ + ++ +V G LY+R LL+C+ +E+ +L ++HEG
Sbjct: 1626 TYLTDKTLPEDREGSERVQRISKRYVLVEGTLYRRAANGILLKCIPQEQGVELLADIHEG 1685
Query: 1250 VCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPW 1309
CG+H + R+LV K R G+YWP D + V++C CQ + + PA L + W
Sbjct: 1686 ECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQIHQPAQALQIIPLSW 1745
Query: 1310 PFHKSGVDIVGPFPPAP*QLKFLIV 1334
PF G+DI+GPF AP ++L V
Sbjct: 1746 PFAVWGLDILGPFKRAPGGFEYLYV 1770
Score = 52.0 bits (123), Expect = 2e-04
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 1447 CFKQISLPKKKKKFSISYSRLMNGPKIKVFCLK----NS*VQ----VLWSYHTTPHSTTG 1498
CF + P+ + + + ++ G K K F + +S ++ VLW+ TTP TG
Sbjct: 1834 CFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATG 1893
Query: 1499 ETPFTMVYGADAMLPVEIDTPTWRRENFNEEANEVGIQCTMDMIDEIR 1546
ETPF +VYGA+A+LP E+ + R + E + + +D ++E R
Sbjct: 1894 ETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYLEERR 1941
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.339 0.147 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,373,524,267
Number of Sequences: 2540612
Number of extensions: 94245837
Number of successful extensions: 366348
Number of sequences better than 10.0: 34714
Number of HSP's better than 10.0 without gapping: 2011
Number of HSP's successfully gapped in prelim test: 32704
Number of HSP's that attempted gapping in prelim test: 330780
Number of HSP's gapped (non-prelim): 45401
length of query: 1546
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1405
effective length of database: 505,134,102
effective search space: 709713413310
effective search space used: 709713413310
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 82 (36.2 bits)
Medicago: description of AC125481.2