BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125479.3 - phase: 0
(68 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB61981.1| putative protein [Arabidopsis thaliana] gi|42572... 46 3e-04
ref|NP_850668.1| zinc finger (C3HC4-type RING finger) family pro... 46 3e-04
ref|NP_850667.1| zinc finger (C3HC4-type RING finger) family pro... 46 3e-04
ref|NP_909033.1| P0684C01.6 [Oryza sativa (japonica cultivar-gro... 44 0.001
gb|AAT66770.1| putative zinc finger protein [Solanum demissum] 43 0.002
gb|AAT06458.1| At2g01275 [Arabidopsis thaliana] gi|22325409|ref|... 42 0.003
ref|XP_549957.1| unknown protein [Oryza sativa (japonica cultiva... 42 0.004
ref|XP_482577.1| zinc finger protein-like [Oryza sativa (japonic... 40 0.016
ref|XP_466400.1| zinc finger (C3HC4-type RING finger)-like prote... 40 0.016
gb|AAM14274.1| unknown protein [Arabidopsis thaliana] gi|1752910... 39 0.027
gb|AAM98316.1| At5g62460/K19B1_7 [Arabidopsis thaliana] gi|10178... 39 0.027
ref|NP_973407.1| zinc finger (C3HC4-type RING finger) family pro... 39 0.027
ref|XP_475867.1| unknown protein [Oryza sativa (japonica cultiva... 38 0.079
ref|NP_171761.1| zinc finger (C3HC4-type RING finger) family pro... 37 0.18
pir||B86156 hypothetical protein T14P4.10 - Arabidopsis thaliana... 37 0.18
gb|AAM61387.1| nucleoside triphosphatase, putative [Arabidopsis ... 36 0.23
dbj|BAC42747.1| unknown protein [Arabidopsis thaliana] 36 0.23
ref|NP_172878.1| zinc finger (C3HC4-type RING finger) family pro... 36 0.23
gb|AAF43925.1| Contains similarity to PIT1 from Arabidopsis thal... 36 0.23
ref|NP_914113.1| B1146F03.23 [Oryza sativa (japonica cultivar-gr... 36 0.30
>emb|CAB61981.1| putative protein [Arabidopsis thaliana]
gi|42572601|ref|NP_974396.1| zinc finger (C3HC4-type
RING finger) family protein [Arabidopsis thaliana]
gi|15232824|ref|NP_190339.1| zinc finger (C3HC4-type
RING finger) family protein [Arabidopsis thaliana]
gi|11290553|pir||T45715 hypothetical protein F1P2.100 -
Arabidopsis thaliana
Length = 288
Score = 45.8 bits (107), Expect = 3e-04
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 8 TVHQVEIPIEELSAALREQLVIGKMGECRYCHEEEWIYRLEAPCRCDGSLK 58
+V++ E+P E + A E+ ++ + ECR C EE+ LEAPC C+GSLK
Sbjct: 43 SVNETEVPREYYAVADEEEPLLQSV-ECRICQEEDSTKNLEAPCACNGSLK 92
>ref|NP_850668.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis
thaliana] gi|42572599|ref|NP_974395.1| zinc finger
(C3HC4-type RING finger) family protein [Arabidopsis
thaliana]
Length = 249
Score = 45.8 bits (107), Expect = 3e-04
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 8 TVHQVEIPIEELSAALREQLVIGKMGECRYCHEEEWIYRLEAPCRCDGSLK 58
+V++ E+P E + A E+ ++ + ECR C EE+ LEAPC C+GSLK
Sbjct: 43 SVNETEVPREYYAVADEEEPLLQSV-ECRICQEEDSTKNLEAPCACNGSLK 92
>ref|NP_850667.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis
thaliana] gi|42572597|ref|NP_974394.1| zinc finger
(C3HC4-type RING finger) family protein [Arabidopsis
thaliana]
Length = 232
Score = 45.8 bits (107), Expect = 3e-04
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 8 TVHQVEIPIEELSAALREQLVIGKMGECRYCHEEEWIYRLEAPCRCDGSLK 58
+V++ E+P E + A E+ ++ + ECR C EE+ LEAPC C+GSLK
Sbjct: 43 SVNETEVPREYYAVADEEEPLLQSV-ECRICQEEDSTKNLEAPCACNGSLK 92
>ref|NP_909033.1| P0684C01.6 [Oryza sativa (japonica cultivar-group)]
Length = 84
Score = 43.9 bits (102), Expect = 0.001
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 31 KMGECRYCHEEEWIYRLEAPCRCDGSLK 58
KM ECR C EE+W +EAPC C GSLK
Sbjct: 51 KMVECRICQEEDWDTSMEAPCACCGSLK 78
>gb|AAT66770.1| putative zinc finger protein [Solanum demissum]
Length = 284
Score = 42.7 bits (99), Expect = 0.002
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 7 ITVHQVEIPIEELSAALREQLVIGKMGECRYCHEEEWIYRLEAPCRCDGSLK 58
I V + ++ EE E +IG+ ECR C EE+ + +LE+PC C GSLK
Sbjct: 35 IAVDEKKVLEEEEEEGNEEVPLIGR-AECRICQEEDSLDKLESPCACSGSLK 85
>gb|AAT06458.1| At2g01275 [Arabidopsis thaliana] gi|22325409|ref|NP_671763.1|
zinc finger (C3HC4-type RING finger) family protein
[Arabidopsis thaliana]
Length = 259
Score = 42.4 bits (98), Expect = 0.003
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 11 QVEIPIEE---LSAALREQLVIG--KMGECRYCHEEEWIYRLEAPCRCDGSLK 58
Q IP+EE L E L G M ECR CH+E+ +E PC C GS+K
Sbjct: 30 QANIPVEECTILDDKTLEMLRNGDLSMAECRICHDEDLDSNMETPCSCSGSVK 82
>ref|XP_549957.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|53791250|dbj|BAD52455.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 218
Score = 42.0 bits (97), Expect = 0.004
Identities = 17/27 (62%), Positives = 19/27 (69%)
Query: 32 MGECRYCHEEEWIYRLEAPCRCDGSLK 58
M ECR C EE+W +EAPC C GSLK
Sbjct: 1 MVECRICQEEDWDTSMEAPCACCGSLK 27
>ref|XP_482577.1| zinc finger protein-like [Oryza sativa (japonica cultivar-group)]
gi|42408883|dbj|BAD10141.1| zinc finger protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 276
Score = 40.0 bits (92), Expect = 0.016
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 8 TVHQVEIPIEELSAALREQLVIGKMGECRYCHEEEWIYRLEAPCRCDGSLK 58
T H + + + E A E L+ + ECR C EE+ I LE+PC C GSLK
Sbjct: 37 TTHTL-LSVRESMGAEEEPLI--QTVECRICQEEDNISNLESPCACTGSLK 84
>ref|XP_466400.1| zinc finger (C3HC4-type RING finger)-like protein [Oryza sativa
(japonica cultivar-group)] gi|50725251|dbj|BAD34253.1|
zinc finger (C3HC4-type RING finger)-like protein
[Oryza sativa (japonica cultivar-group)]
Length = 250
Score = 40.0 bits (92), Expect = 0.016
Identities = 22/56 (39%), Positives = 28/56 (49%), Gaps = 1/56 (1%)
Query: 3 MGDEITVHQVEIPIEELSAALREQLVIGKMGECRYCHEEEWIYRLEAPCRCDGSLK 58
MGD + V + + +IG M ECR C EE+ LE+PC C GSLK
Sbjct: 1 MGDHVAVDVGGLMASRGAGEEETGALIG-MVECRICQEEDLAKNLESPCACSGSLK 55
>gb|AAM14274.1| unknown protein [Arabidopsis thaliana] gi|17529100|gb|AAL38760.1|
unknown protein [Arabidopsis thaliana]
gi|3461820|gb|AAC32914.1| unknown protein [Arabidopsis
thaliana] gi|42570663|ref|NP_973405.1| zinc finger
(C3HC4-type RING finger) family protein [Arabidopsis
thaliana] gi|42570665|ref|NP_973406.1| zinc finger
(C3HC4-type RING finger) family protein [Arabidopsis
thaliana] gi|30678036|ref|NP_849929.1| zinc finger
(C3HC4-type RING finger) family protein [Arabidopsis
thaliana] gi|15227065|ref|NP_178396.1| zinc finger
(C3HC4-type RING finger) family protein [Arabidopsis
thaliana] gi|25365876|pir||F84442 hypothetical protein
At2g02960 [imported] - Arabidopsis thaliana
Length = 271
Score = 39.3 bits (90), Expect = 0.027
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 25 EQLVIGKMGECRYCHEEEWIYRLEAPCRCDGSLK 58
E L++ GECR C +E + LE+PC C GSLK
Sbjct: 35 EPLIVS--GECRICSDESPVENLESPCACSGSLK 66
>gb|AAM98316.1| At5g62460/K19B1_7 [Arabidopsis thaliana]
gi|10178077|dbj|BAB11496.1| unnamed protein product
[Arabidopsis thaliana] gi|18424590|ref|NP_568953.1| zinc
finger (C3HC4-type RING finger) family protein
[Arabidopsis thaliana] gi|16974607|gb|AAL31206.1|
AT5g62460/K19B1_7 [Arabidopsis thaliana]
Length = 307
Score = 39.3 bits (90), Expect = 0.027
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 34 ECRYCHEEEWIYRLEAPCRCDGSLK 58
ECR C EE+ + LE+PC C GSLK
Sbjct: 77 ECRICQEEDSVKNLESPCSCSGSLK 101
>ref|NP_973407.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis
thaliana]
Length = 275
Score = 39.3 bits (90), Expect = 0.027
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 25 EQLVIGKMGECRYCHEEEWIYRLEAPCRCDGSLK 58
E L++ GECR C +E + LE+PC C GSLK
Sbjct: 35 EPLIVS--GECRICSDESPVENLESPCACSGSLK 66
>ref|XP_475867.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|50878419|gb|AAT85193.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|47900543|gb|AAT39278.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 252
Score = 37.7 bits (86), Expect = 0.079
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 4 GDEITVHQVEIPIEELSAALREQLVI--------------GKMGECRYCHEEEWIYRLEA 49
G +T V+ I+E SAA VI G + ECR C EE+ +E
Sbjct: 10 GRLLTESTVQSAIDEASAAAMPSSVIASEHNDVQDEREKSGVLVECRICQEEDDQTYMET 69
Query: 50 PCRCDGSLK 58
PC C GSLK
Sbjct: 70 PCSCRGSLK 78
>ref|NP_171761.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis
thaliana]
Length = 146
Score = 36.6 bits (83), Expect = 0.18
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 25 EQLVIGKMGECRYCHEEEWIYRLEAPCRCDGSLK 58
E + CR CHEEE EAPC C G++K
Sbjct: 10 ETYLKSSFNRCRICHEEEAESYFEAPCSCSGTIK 43
>pir||B86156 hypothetical protein T14P4.10 - Arabidopsis thaliana
gi|9972376|gb|AAG10626.1| Unknown protein [Arabidopsis
thaliana]
Length = 214
Score = 36.6 bits (83), Expect = 0.18
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 25 EQLVIGKMGECRYCHEEEWIYRLEAPCRCDGSLK 58
E + CR CHEEE EAPC C G++K
Sbjct: 10 ETYLKSSFNRCRICHEEEAESYFEAPCSCSGTIK 43
>gb|AAM61387.1| nucleoside triphosphatase, putative [Arabidopsis thaliana]
Length = 265
Score = 36.2 bits (82), Expect = 0.23
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 34 ECRYCHEEEWIYRLEAPCRCDGSLK 58
ECR C +E I LE+PC C+GSLK
Sbjct: 56 ECRICQDECDIKNLESPCACNGSLK 80
>dbj|BAC42747.1| unknown protein [Arabidopsis thaliana]
Length = 265
Score = 36.2 bits (82), Expect = 0.23
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 34 ECRYCHEEEWIYRLEAPCRCDGSLK 58
ECR C +E I LE+PC C+GSLK
Sbjct: 56 ECRICQDECDIKNLESPCACNGSLK 80
>ref|NP_172878.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis
thaliana] gi|30683688|ref|NP_849660.1| zinc finger
(C3HC4-type RING finger) family protein [Arabidopsis
thaliana] gi|67037436|gb|AAY63562.1| RING domain
protein [Arabidopsis thaliana]
Length = 265
Score = 36.2 bits (82), Expect = 0.23
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 34 ECRYCHEEEWIYRLEAPCRCDGSLK 58
ECR C +E I LE+PC C+GSLK
Sbjct: 56 ECRICQDECDIKNLESPCACNGSLK 80
>gb|AAF43925.1| Contains similarity to PIT1 from Arabidopsis thaliana gb|AF130849
gi|25365878|pir||F86276 F14L17.2 protein - Arabidopsis
thaliana
Length = 274
Score = 36.2 bits (82), Expect = 0.23
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 34 ECRYCHEEEWIYRLEAPCRCDGSLK 58
ECR C +E I LE+PC C+GSLK
Sbjct: 56 ECRICQDECDIKNLESPCACNGSLK 80
>ref|NP_914113.1| B1146F03.23 [Oryza sativa (japonica cultivar-group)]
Length = 266
Score = 35.8 bits (81), Expect = 0.30
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 32 MGECRYCHEEE--WIYRLEAPCRCDGSLK 58
M +CR CHEEE +E+PC C GSLK
Sbjct: 58 MRQCRICHEEEEEGCTAMESPCGCSGSLK 86
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.324 0.140 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,424,542
Number of Sequences: 2540612
Number of extensions: 3706550
Number of successful extensions: 9270
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9240
Number of HSP's gapped (non-prelim): 30
length of query: 68
length of database: 863,360,394
effective HSP length: 44
effective length of query: 24
effective length of database: 751,573,466
effective search space: 18037763184
effective search space used: 18037763184
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 68 (30.8 bits)
Medicago: description of AC125479.3