BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124972.11 - phase: 0 /pseudo
(127 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAT40554.1| hypothetical protein PGEC542.18 [Solanum demissum] 222 1e-57
ref|XP_477670.1| putative adrenal gland protein AD-004 [Oryza sa... 202 1e-51
dbj|BAB10972.1| unnamed protein product [Arabidopsis thaliana] g... 184 5e-46
ref|XP_642399.1| hypothetical protein DDB0230995 [Dictyostelium ... 173 1e-42
ref|NP_200842.1| maoC-like dehydratase domain-containing protein... 167 5e-41
gb|AAH77930.1| MGC80885 protein [Xenopus laevis] 163 8e-40
ref|NP_001017167.1| hypothetical protein LOC549921 [Xenopus trop... 163 8e-40
gb|AAH97802.1| Unknown (protein for MGC:115514) [Xenopus laevis] 162 1e-39
emb|CAG01320.1| unnamed protein product [Tetraodon nigroviridis] 157 7e-38
emb|CAH65026.1| hypothetical protein [Gallus gallus] 156 1e-37
ref|XP_535264.1| PREDICTED: similar to RIKEN cDNA 4921516M08 [Ca... 155 2e-37
emb|CAI48031.1| coilin-interacting nulcear ATPase protein [Homo ... 154 4e-37
gb|AAQ02412.1| TAF9 RNA polymerase II, TATA box binding protein ... 154 4e-37
pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004 154 4e-37
ref|NP_001002118.1| hypothetical protein LOC415208 [Danio rerio]... 153 8e-37
gb|AAW27245.1| unknown [Schistosoma japonicum] 152 1e-36
gb|AAW25029.1| unknown [Schistosoma japonicum] 152 2e-36
ref|NP_081868.1| TAF9 RNA polymerase II, TATA box binding protei... 151 3e-36
ref|NP_001012481.1| TAF9 RNA polymerase II, TATA box binding pro... 151 3e-36
gb|AAY66857.1| TATA box binding protein (TBP)-associated factor... 150 9e-36
>gb|AAT40554.1| hypothetical protein PGEC542.18 [Solanum demissum]
Length = 177
Score = 222 bits (566), Expect = 1e-57
Identities = 102/127 (80%), Positives = 114/127 (89%)
Query: 1 MVKDSIKRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDS 60
M +S RR+PNIL+TGTPGTGKTTTS+ALAEATQL HINIG+LVKEK LHDGWDD LD
Sbjct: 1 MAHNSSSRRRPNILITGTPGTGKTTTSSALAEATQLRHINIGELVKEKKLHDGWDDTLDC 60
Query: 61 YILNEDLVCDELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKE 120
YI+NEDLVCDELED+M+ GGNIVD+HGCDFFPERWFD VVVLQTDNT+LYDRLSRRGY
Sbjct: 61 YIINEDLVCDELEDIMEAGGNIVDHHGCDFFPERWFDRVVVLQTDNTVLYDRLSRRGYTG 120
Query: 121 SKLSNNV 127
KL+NN+
Sbjct: 121 QKLTNNI 127
>ref|XP_477670.1| putative adrenal gland protein AD-004 [Oryza sativa (japonica
cultivar-group)] gi|34395293|dbj|BAC84255.1| putative
adrenal gland protein AD-004 [Oryza sativa (japonica
cultivar-group)]
Length = 180
Score = 202 bits (514), Expect = 1e-51
Identities = 90/121 (74%), Positives = 109/121 (89%)
Query: 7 KRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNED 66
+R +PN+LVTGTPGTGKTTT + LA+A L HINIGDLV+EK+LHDGWD+EL+ +I+NED
Sbjct: 9 RRTRPNVLVTGTPGTGKTTTCSLLADAVDLRHINIGDLVREKSLHDGWDEELECHIINED 68
Query: 67 LVCDELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLSNN 126
LVCDELEDVM+EGG +VDYHGCDFFPERWFD VVVLQTDN+IL+DRL+ RGY +KL+NN
Sbjct: 69 LVCDELEDVMEEGGILVDYHGCDFFPERWFDLVVVLQTDNSILHDRLTSRGYMGAKLTNN 128
Query: 127 V 127
+
Sbjct: 129 I 129
>dbj|BAB10972.1| unnamed protein product [Arabidopsis thaliana]
gi|26450277|dbj|BAC42255.1| unknown protein [Arabidopsis
thaliana] gi|20147317|gb|AAM10372.1| AT5g60340/k9b18_30
[Arabidopsis thaliana] gi|19310480|gb|AAL84974.1|
AT5g60340/k9b18_30 [Arabidopsis thaliana]
Length = 178
Score = 184 bits (466), Expect = 5e-46
Identities = 82/121 (67%), Positives = 104/121 (85%)
Query: 7 KRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNED 66
+R +PN+L+TGTPGTGK+TT++ALAEAT L +I IGDLVKEK + GWD+EL+ + +NED
Sbjct: 10 RRERPNLLITGTPGTGKSTTASALAEATNLRYICIGDLVKEKEFYHGWDNELECHFINED 69
Query: 67 LVCDELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLSNN 126
V DEL+D M EGGNIVDYHGCDFFP+RWFD VVVL+T+N++LYDRL+ RGY +KLSNN
Sbjct: 70 SVIDELDDAMIEGGNIVDYHGCDFFPQRWFDRVVVLRTENSVLYDRLTNRGYSGTKLSNN 129
Query: 127 V 127
+
Sbjct: 130 L 130
>ref|XP_642399.1| hypothetical protein DDB0230995 [Dictyostelium discoideum]
gi|60470439|gb|EAL68419.1| unknown [Dictyostelium
discoideum]
Length = 175
Score = 173 bits (438), Expect = 1e-42
Identities = 76/123 (61%), Positives = 97/123 (78%)
Query: 5 SIKRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILN 64
+IKR KPNIL+TGTPGTGKT+ + +A ++NHI+I VKEK LHDGWD E YIL+
Sbjct: 2 NIKRNKPNILITGTPGTGKTSLAGVIASNNEMNHIDISSAVKEKELHDGWDSEFQCYILD 61
Query: 65 EDLVCDELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLS 124
ED VCDE EDVM +GGN+VD+HGC++FPERWFD V+VL+TD IL DRL +R Y + K++
Sbjct: 62 EDKVCDEFEDVMVKGGNVVDHHGCEWFPERWFDLVIVLRTDIKILNDRLEKRNYNQHKIT 121
Query: 125 NNV 127
NN+
Sbjct: 122 NNL 124
>ref|NP_200842.1| maoC-like dehydratase domain-containing protein [Arabidopsis
thaliana]
Length = 337
Score = 167 bits (423), Expect = 5e-41
Identities = 74/108 (68%), Positives = 94/108 (86%)
Query: 7 KRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNED 66
+R +PN+L+TGTPGTGK+TT++ALAEAT L +I IGDLVKEK + GWD+EL+ + +NED
Sbjct: 10 RRERPNLLITGTPGTGKSTTASALAEATNLRYICIGDLVKEKEFYHGWDNELECHFINED 69
Query: 67 LVCDELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLS 114
V DEL+D M EGGNIVDYHGCDFFP+RWFD VVVL+T+N++LYDRL+
Sbjct: 70 SVIDELDDAMIEGGNIVDYHGCDFFPQRWFDRVVVLRTENSVLYDRLT 117
>gb|AAH77930.1| MGC80885 protein [Xenopus laevis]
Length = 171
Score = 163 bits (413), Expect = 8e-40
Identities = 76/119 (63%), Positives = 92/119 (76%)
Query: 9 RKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNEDLV 68
R PNIL+TGTPG GKTT L+ T L +IN+GDL KE NL++G+D+E D IL+ED V
Sbjct: 2 RSPNILLTGTPGVGKTTLGKELSSRTGLTYINVGDLAKEGNLYEGYDEEYDCPILDEDRV 61
Query: 69 CDELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLSNNV 127
DELED M EGG IVDYHGCDFFPERWF+ V VL++DN +LY+RL RGYKE KL +N+
Sbjct: 62 VDELEDKMSEGGVIVDYHGCDFFPERWFNIVFVLRSDNGLLYERLESRGYKEKKLQDNI 120
>ref|NP_001017167.1| hypothetical protein LOC549921 [Xenopus tropicalis]
Length = 171
Score = 163 bits (413), Expect = 8e-40
Identities = 76/119 (63%), Positives = 92/119 (76%)
Query: 9 RKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNEDLV 68
R PNIL+TGTPG GKTT L+ T L +IN+GDL KE NL++G+D+E D IL+ED V
Sbjct: 2 RSPNILLTGTPGVGKTTLGKELSSRTGLEYINVGDLAKEGNLYEGYDEEYDCPILDEDRV 61
Query: 69 CDELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLSNNV 127
DELED M EGG I+DYHGCDFFPERWF+ V VL+TDN +LY+RL RGYKE KL +N+
Sbjct: 62 VDELEDKMTEGGVILDYHGCDFFPERWFNIVFVLRTDNGLLYERLESRGYKEKKLQDNI 120
>gb|AAH97802.1| Unknown (protein for MGC:115514) [Xenopus laevis]
Length = 171
Score = 162 bits (411), Expect = 1e-39
Identities = 75/119 (63%), Positives = 92/119 (77%)
Query: 9 RKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNEDLV 68
R PNIL+TGTPG GKTT L+ T L +IN+GDL KE NL++G+D+E D IL+ED V
Sbjct: 2 RSPNILLTGTPGVGKTTLGKELSSRTGLTYINVGDLAKEGNLYEGYDEEYDCPILDEDRV 61
Query: 69 CDELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLSNNV 127
DELED M +GG IVDYHGC+FFPERWF+ V VL+TDN++LY RL RGYKE KL +N+
Sbjct: 62 VDELEDKMSDGGVIVDYHGCEFFPERWFNIVFVLRTDNSLLYQRLESRGYKEKKLQDNI 120
>emb|CAG01320.1| unnamed protein product [Tetraodon nigroviridis]
Length = 172
Score = 157 bits (396), Expect = 7e-38
Identities = 75/119 (63%), Positives = 89/119 (74%)
Query: 9 RKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNEDLV 68
+KPNIL+TGTPG GKTT LA+ T L ++N+GDL +E L+DG+DDE IL+ED V
Sbjct: 3 KKPNILLTGTPGVGKTTLGKELAQRTGLVYVNVGDLAQEGQLYDGYDDEYKCPILDEDRV 62
Query: 69 CDELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLSNNV 127
DELED M EGG IVDYHGCDFFP+RWFD V VL+TDNT LY RL RGY KL +N+
Sbjct: 63 VDELEDKMTEGGVIVDYHGCDFFPQRWFDIVFVLRTDNTQLYTRLESRGYTGKKLEHNL 121
>emb|CAH65026.1| hypothetical protein [Gallus gallus]
Length = 171
Score = 156 bits (394), Expect = 1e-37
Identities = 73/119 (61%), Positives = 90/119 (75%)
Query: 9 RKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNEDLV 68
R+PNIL+TGTPG GK+T LA T L +I++GDL KE+ L++G+D+E + IL+ED V
Sbjct: 2 RRPNILLTGTPGVGKSTLGKELASRTGLTYISVGDLAKEEELYEGFDEEYECPILDEDRV 61
Query: 69 CDELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLSNNV 127
DELED M EGG IVDYHGCDFFPE WF V VL+TDN+ LYDRL RGYK KL +N+
Sbjct: 62 IDELEDKMREGGVIVDYHGCDFFPEHWFHIVFVLRTDNSFLYDRLESRGYKGKKLQDNI 120
>ref|XP_535264.1| PREDICTED: similar to RIKEN cDNA 4921516M08 [Canis familiaris]
Length = 172
Score = 155 bits (393), Expect = 2e-37
Identities = 73/117 (62%), Positives = 87/117 (73%)
Query: 11 PNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNEDLVCD 70
PNIL+TGTPG GKTT LA + L +IN+GDL +E L+DG+D+E D IL+ED V D
Sbjct: 4 PNILLTGTPGVGKTTLGKELASRSGLKYINVGDLAQEGQLYDGYDEEYDCPILDEDRVVD 63
Query: 71 ELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLSNNV 127
ELE+ M EGG IVDYHGCDFFPERWF V VLQ DN++LY RL RGY E KL +N+
Sbjct: 64 ELENQMSEGGVIVDYHGCDFFPERWFHIVFVLQADNSVLYKRLETRGYNEKKLKDNI 120
>emb|CAI48031.1| coilin-interacting nulcear ATPase protein [Homo sapiens]
gi|59889712|emb|CAI48030.1| coilin-interacting nuclear
ATPase protein [Homo sapiens] gi|4929743|gb|AAD34132.1|
CGI-137 protein [Homo sapiens]
gi|13938553|gb|AAH07426.1| Adrenal gland protein AD-004
[Homo sapiens] gi|13938420|gb|AAH07349.1| Adrenal gland
protein AD-004 [Homo sapiens]
gi|7706212|ref|NP_057367.1| TAF9 RNA polymerase II
isoform b [Homo sapiens] gi|6523801|gb|AAF14860.1|
adrenal gland protein AD-004 [Homo sapiens]
gi|6831735|sp|Q9Y3D8|KAD6_HUMAN Adenylate kinase
isoenzyme 6 (ATP-AMP transphosphorylase 6)
Length = 172
Score = 154 bits (390), Expect = 4e-37
Identities = 71/117 (60%), Positives = 89/117 (75%)
Query: 11 PNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNEDLVCD 70
PNIL+TGTPG GKTT LA + L +IN+GDL +E+ L+DG+D+E D IL+ED V D
Sbjct: 4 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 63
Query: 71 ELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLSNNV 127
EL++ M EGG IVDYHGCDFFPERWF V VL+TD +LY+RL RGY E KL++N+
Sbjct: 64 ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNI 120
>gb|AAQ02412.1| TAF9 RNA polymerase II, TATA box binding protein [synthetic
construct]
Length = 173
Score = 154 bits (390), Expect = 4e-37
Identities = 71/117 (60%), Positives = 89/117 (75%)
Query: 11 PNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNEDLVCD 70
PNIL+TGTPG GKTT LA + L +IN+GDL +E+ L+DG+D+E D IL+ED V D
Sbjct: 4 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 63
Query: 71 ELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLSNNV 127
EL++ M EGG IVDYHGCDFFPERWF V VL+TD +LY+RL RGY E KL++N+
Sbjct: 64 ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNI 120
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 154 bits (390), Expect = 4e-37
Identities = 71/117 (60%), Positives = 89/117 (75%)
Query: 11 PNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNEDLVCD 70
PNIL+TGTPG GKTT LA + L +IN+GDL +E+ L+DG+D+E D IL+ED V D
Sbjct: 5 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 64
Query: 71 ELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLSNNV 127
EL++ M EGG IVDYHGCDFFPERWF V VL+TD +LY+RL RGY E KL++N+
Sbjct: 65 ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNI 121
>ref|NP_001002118.1| hypothetical protein LOC415208 [Danio rerio]
gi|47939442|gb|AAH71472.1| Zgc:86811 [Danio rerio]
Length = 171
Score = 153 bits (387), Expect = 8e-37
Identities = 72/119 (60%), Positives = 88/119 (73%)
Query: 9 RKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNEDLV 68
++PNIL+TGTPG GKTT LA+ T L ++N+GDL +E L DG+D+E IL+ED V
Sbjct: 2 KRPNILLTGTPGVGKTTLGKELAQRTGLTYVNVGDLAQEAELFDGFDEEYQCPILDEDRV 61
Query: 69 CDELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLSNNV 127
DELED M +GG I+DYHGCDFFPERWF V VL+TDNT LY+RL RGY KL +NV
Sbjct: 62 VDELEDQMGDGGVIIDYHGCDFFPERWFHIVFVLRTDNTNLYNRLESRGYTGKKLQDNV 120
>gb|AAW27245.1| unknown [Schistosoma japonicum]
Length = 174
Score = 152 bits (385), Expect = 1e-36
Identities = 68/115 (59%), Positives = 88/115 (76%)
Query: 11 PNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNEDLVCD 70
PNIL+TGTPGTGKTT S ++E + LN+I+I ++ KE L+DG+D+ + YIL+ED + D
Sbjct: 7 PNILITGTPGTGKTTVSKEVSERSSLNYISINEVAKEGELYDGYDEANECYILDEDRIVD 66
Query: 71 ELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLSN 125
ELED M GG I+DYH C+FFPERWFD V VL+TDNTILY RL+ R Y K+S+
Sbjct: 67 ELEDAMSSGGQIIDYHSCEFFPERWFDAVFVLRTDNTILYPRLTSRDYSSKKVSD 121
>gb|AAW25029.1| unknown [Schistosoma japonicum]
Length = 185
Score = 152 bits (383), Expect = 2e-36
Identities = 74/128 (57%), Positives = 91/128 (70%), Gaps = 4/128 (3%)
Query: 4 DSIKRRK----PNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELD 59
+SI+ R+ PNIL+TGTPG GKTT LA + L ++N+GDL +E L+DG+D+E
Sbjct: 6 NSIRGRRTMKLPNILLTGTPGVGKTTLGKELASRSGLKYVNVGDLAREGQLYDGYDEEYG 65
Query: 60 SYILNEDLVCDELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYK 119
IL+ED V DELE M EGG IVDYHGCDFFPERWF V VL+TDN +LY RL RGY
Sbjct: 66 CPILDEDRVVDELEHQMQEGGVIVDYHGCDFFPERWFHIVFVLRTDNGVLYKRLETRGYN 125
Query: 120 ESKLSNNV 127
E KL +N+
Sbjct: 126 EKKLQDNI 133
>ref|NP_081868.1| TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated
factor isoform 2 [Mus musculus]
gi|18044471|gb|AAH19453.1| TAF9 RNA polymerase II, TATA
box binding protein (TBP)-associated factor, isoform 2
[Mus musculus]
Length = 172
Score = 151 bits (382), Expect = 3e-36
Identities = 71/117 (60%), Positives = 85/117 (71%)
Query: 11 PNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNEDLVCD 70
PNIL+TGTPG GKTT LA + L ++N+GDL +E L+DG+D+E IL+ED V D
Sbjct: 4 PNILLTGTPGVGKTTLGKELASRSGLKYVNVGDLAREGQLYDGYDEEYGCPILDEDRVVD 63
Query: 71 ELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLSNNV 127
ELE M EGG IVDYHGCDFFPERWF V VL+TDN +LY RL RGY E KL +N+
Sbjct: 64 ELEHQMQEGGVIVDYHGCDFFPERWFHIVFVLRTDNGVLYKRLETRGYNEKKLQDNI 120
>ref|NP_001012481.1| TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated
factor a [Rattus norvegicus] gi|59808266|gb|AAH89989.1|
TAF9 RNA polymerase II, TATA box binding protein
(TBP)-associated factor (predicted) [Rattus norvegicus]
Length = 172
Score = 151 bits (382), Expect = 3e-36
Identities = 72/117 (61%), Positives = 86/117 (72%)
Query: 11 PNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNEDLVCD 70
PNIL+TGTPG GKTT LA + L ++N+GDL +E +L+DG+D+E IL+ED V D
Sbjct: 4 PNILLTGTPGVGKTTLGKELASRSGLKYVNVGDLAREGHLYDGYDEEYGCPILDEDRVVD 63
Query: 71 ELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLSNNV 127
ELE M EGG IVDYHGCDFFPERWF V VL+TDN ILY RL RGY E KL +N+
Sbjct: 64 ELEPQMTEGGVIVDYHGCDFFPERWFHIVFVLRTDNGILYKRLETRGYHEKKLQDNI 120
>gb|AAY66857.1| TATA box binding protein (TBP)-associated factor [Ixodes
scapularis]
Length = 176
Score = 150 bits (378), Expect = 9e-36
Identities = 68/123 (55%), Positives = 93/123 (75%), Gaps = 2/123 (1%)
Query: 7 KRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNED 66
+R PNIL+TGTPGTGK+T ++ +A+ + L+ +N+G + KE +L DG+D++ D +L+ED
Sbjct: 3 RRGLPNILITGTPGTGKSTLASEVAQRSGLDWLNVGQVAKENDLFDGYDEKYDCAVLDED 62
Query: 67 LVCDELEDVMDE--GGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKESKLS 124
V DEL+D + + GGN+VDYHGCDFFP+RWFD V VL+TDN +LYDRL RGY KL
Sbjct: 63 RVVDELDDKLSQPSGGNLVDYHGCDFFPKRWFDVVFVLRTDNAVLYDRLRARGYTGKKLE 122
Query: 125 NNV 127
NV
Sbjct: 123 ENV 125
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233,542,123
Number of Sequences: 2540612
Number of extensions: 9626746
Number of successful extensions: 48672
Number of sequences better than 10.0: 884
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 369
Number of HSP's that attempted gapping in prelim test: 47959
Number of HSP's gapped (non-prelim): 1000
length of query: 127
length of database: 863,360,394
effective HSP length: 103
effective length of query: 24
effective length of database: 601,677,358
effective search space: 14440256592
effective search space used: 14440256592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC124972.11