BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124965.10 + phase: 0
(1569 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO23078.1| polyprotein [Glycine max] 1945 0.0
gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsi... 1118 0.0
dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thalia... 1095 0.0
ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sa... 1076 0.0
gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cul... 1034 0.0
ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cu... 1030 0.0
gb|AAL75999.1| putative polyprotein [Zea mays] 1030 0.0
ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|1545160... 1027 0.0
ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cu... 1025 0.0
emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar... 1020 0.0
ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultiv... 1013 0.0
gb|AAL76001.1| putative gag-pol polyprotein [Zea mays] 984 0.0
gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidop... 977 0.0
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultiva... 969 0.0
gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cult... 966 0.0
gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japon... 951 0.0
gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana] 950 0.0
gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cult... 946 0.0
gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japon... 870 0.0
ref|XP_470218.1| Putative retroelement [Oryza sativa] gi|1545160... 853 0.0
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 1945 bits (5038), Expect = 0.0
Identities = 961/1566 (61%), Positives = 1203/1566 (76%), Gaps = 57/1566 (3%)
Query: 1 MADNTRLKELTTELRRQAEAQ-----------EKSNVENKARFDRLEAMQTASDLRFNQL 49
MADNTR+KE+ EL++ A+A E+ N A+ +++E MQ+ +D +F+QL
Sbjct: 1 MADNTRMKEVYAELKKNADAITRVSDDLQNHIERLEATNHAQMEKIEVMQSTNDSQFSQL 60
Query: 50 SATLERFMQQAPQHNVS-HGNTNSGSSSSVISATVVGSQSTFVGHTQSAVVGKQSTSSMS 108
+A + + +Q+ +S HG +NS +Q SS
Sbjct: 61 NAVMSQVLQRLQNIPMSSHGASNSQK--------------------------EQQRSS-- 92
Query: 109 SQPFQVRHIKLEFPRFNGKHVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQM 168
FQVR +KL+FPRF+GK+V+DWIFKAEQ+F YY TPDA+RLIIASVHL+Q+VVPW+QM
Sbjct: 93 ---FQVRSVKLDFPRFDGKNVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDVVPWYQM 149
Query: 169 VNRSRPFQSWNDFTRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRVYGLS 228
+ ++ PF SW FTRALELDFGPS YDCPRA+LFKL Q+ +VNEYY++FTAL NRV GLS
Sbjct: 150 LQKTEPFSSWQAFTRALELDFGPSAYDCPRATLFKLNQSATVNEYYMQFTALVNRVDGLS 209
Query: 229 NDALIDCFVSGLKDELRRDVMLHTPISIVKAVSLAKLFEEKIAANFNPK---QPLKPYTP 285
+A++DCFVSGL++E+ RDV P ++ KAV+LAKLFEEK + K + +T
Sbjct: 210 AEAILDCFVSGLQEEISRDVKAMEPRTLTKAVALAKLFEEKYTSPPKTKTFSNLARNFTS 269
Query: 286 AQPHQHRAPFNPTRNDQNQTIEKAPNLP-LLPTPPTRPMSHLQKNPAIKRISPAEMQLRR 344
+ P +ND + PNLP LLPTP T+P + +N IK+ISPAE+QLRR
Sbjct: 270 NTSATQKYPPTNQKNDNPK-----PNLPPLLPTPSTKPFN--LRNQNIKKISPAEIQLRR 322
Query: 345 EKGLCYFCDDKFSFSHKCPNKQLMLLELDDDLDPPDTPSQTAVTSDTETQEVAEHHLSLN 404
EK LCYFCD+KFS +HKCPN+Q+MLL+L++ D T Q VT + + HHLSLN
Sbjct: 323 EKNLCYFCDEKFSPAHKCPNRQVMLLQLEET-DEDQTDEQVMVTEEANMDDDT-HHLSLN 380
Query: 405 ALKGATGMGVIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNG 464
A++G+ G+G IRF G +G I+V IL+DGGSS++FIQPR+ L LP+E VLVGNG
Sbjct: 381 AMRGSNGVGTIRFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKLPVEPAPNLRVLVGNG 440
Query: 465 QHMKAEGVVRKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFY 524
Q + AEG+V++L L +Q ++ VP YLL ++G+DVILG+ WLA+LGPHVADY+ LKF+
Sbjct: 441 QILSAEGIVQQLPLHIQGQEVKVPVYLLQISGADVILGSTWLATLGPHVADYAALTLKFF 500
Query: 525 MDGKFVTLQGESDNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEP 584
+ KF+TLQGE +++ +QL+HFRRLQ+ +I E F IQ I V ED + +P NI+P
Sbjct: 501 QNDKFITLQGEGNSEATQAQLHHFRRLQNTKSIEECFAIQLIQKEVPEDTLKDLPTNIDP 560
Query: 585 EMATLLHTYREIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDM 644
E+A LLHTY ++F +P LPP RE H I LK+G+ PVKV+PYRYPH+QK+QIEKM+Q+M
Sbjct: 561 ELAILLHTYAQVFAVPASLPPQREQDHAIPLKQGSGPVKVRPYRYPHTQKDQIEKMIQEM 620
Query: 645 LEEGIIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGA 704
L +GIIQPS SPFS PI+LVKKKDG+WR CTDYRALNAIT+KDSFPMPTVDELLDELHGA
Sbjct: 621 LVQGIIQPSNSPFSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLDELHGA 680
Query: 705 QYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQP 764
QYF+KLDLRSGYHQIL++PEDR+KTAFRTH GHYEWLVMPFGLT+APATFQ LMN++FQ
Sbjct: 681 QYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQF 740
Query: 765 LLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVV 824
LRK VLVFFDDIL+YS SW HLKH+E V Q L Q+ L+A+LSKCSFG TEV+YLGH V
Sbjct: 741 ALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKV 800
Query: 825 SGSGVAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAF 884
SG GV+M+ KV AVL+WPTP N+KQLRGFLGLTGYYRRFI+SYA IAGPLT+LL+KD+F
Sbjct: 801 SGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAGPLTDLLQKDSF 860
Query: 885 KWDESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKK 944
W+ AF LK+A+T APVL LPDFSQPF+LETDASG GVGAVL Q GHPIAYFSKK
Sbjct: 861 LWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLGQNGHPIAYFSKK 920
Query: 945 MASRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWL 1004
+A RMQ QSAYTRE AIT AL+KFRHYLLG+KFI+RTDQ+SLKSL+DQSLQTPEQQAWL
Sbjct: 921 LAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWL 980
Query: 1005 HKFIGFDFQIEYKPGKDNQAADALSRVMSLSWSAPEHDFLEQLKKEIGNDSHLQTIVQQC 1064
HKF+G+DF+IEYKPGKDNQAADALSR+ L+WS P FLE+L+ + +D HL+ ++ +
Sbjct: 981 HKFLGYDFKIEYKPGKDNQAADALSRMFMLAWSEPHSIFLEELRARLISDPHLKQLM-ET 1039
Query: 1065 VNNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTAQ 1124
D +Y V+EGLLYWK R+VIP E ++++IL+EYH +PIGGHAG+TRTLAR+ AQ
Sbjct: 1040 YKQGADASHYTVREGLLYWKDRVVIPAEEEIVNKILQEYHSSPIGGHAGITRTLARLKAQ 1099
Query: 1125 FYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFG 1184
FYWP M++ ++ +I+ C+ CQQAKS NT AGLLQPLPIP+QVW+DV MDFITGLP SFG
Sbjct: 1100 FYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQQVWEDVAMDFITGLPNSFG 1159
Query: 1185 FTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFW 1244
+VIMVV+DRL+KYAHF+PLKADY+++ VAEAF++++VKLHG+P+SI+SDRD+VFTS FW
Sbjct: 1160 LSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVSDRDRVFTSTFW 1219
Query: 1245 QHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYNT 1304
QHLF++QGTTL+MS+ YHPQ+DGQSE +NKCLEMYLRCFT+++PK W KAL W E WYNT
Sbjct: 1220 QHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKGWVKALPWAEFWYNT 1279
Query: 1305 FLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVM 1364
H SLGM+PF+ALYGREPP LTR + + DP EV++QL DRD LL +LK NL RAQQVM
Sbjct: 1280 AYHMSLGMTPFRALYGREPPTLTRQACSIDDPAEVREQLTDRDALLAKLKINLTRAQQVM 1339
Query: 1365 KSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYKL 1424
K ADKKR DVSF++GD+VLVKLQPYRQ S LRKN KL MRYFGPF V+AK+G VAYKL
Sbjct: 1340 KRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSMRYFGPFKVLAKIGDVAYKL 1399
Query: 1425 QLPETARIHPVFHVSQLKIFKGLTTEPYFPLPLTTMEEGPVIQPEVILNVRNIIRGDRKV 1484
+LP ARIHPVFHVSQLK F G +PY PLPLT E GPV+QP IL R IIRG ++
Sbjct: 1400 ELPSAARIHPVFHVSQLKPFNGTAQDPYLPLPLTVTEMGPVMQPVKILASRIIIRGHNQI 1459
Query: 1485 EQLLVKWKDMQNSEATWEDKQEMLDSYPNLNLEDKIVLEGEGNVMSVEGPIDKSGANDDM 1544
EQ+LV+W++ EATWED +++ SYP NLEDK+V +GEGNV + +K +
Sbjct: 1460 EQILVQWENGLQDEATWEDIEDIKASYPTFNLEDKVVFKGEGNVTNGMSRGEKVNNTAES 1519
Query: 1545 ANKKGL 1550
++++GL
Sbjct: 1520 SSERGL 1525
>gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 1118 bits (2893), Expect = 0.0
Identities = 611/1476 (41%), Positives = 880/1476 (59%), Gaps = 57/1476 (3%)
Query: 67 HGNTNSGSSSSVISATVVGSQSTFVGHTQSAVVGKQSTSSMSSQPFQVR-----HIKLEF 121
+ +T SSS S G Q+T TQ T S P Q R +++
Sbjct: 182 NASTGLPSSSGFPSNPSTGFQTTPTFQTQ--------TFPPQSAPHQPRFEAAPRRTVDY 233
Query: 122 PRFNGKHVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSRPFQSWNDF 181
P + G + DW+F+ EQ F T + E+L A L V W++ +W +F
Sbjct: 234 PAYEGGNADDWLFRLEQCFLSNRTLEEEKLEKAVSCLTGASVTWWRCSKDREQIYTWREF 293
Query: 182 TRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRVYGLSNDALIDCFVSGLK 241
L F PS L ++Q +V EY F L+ + +++D L F++GL+
Sbjct: 294 QEKFMLRFRPSRGSSAVDHLLNVRQTGTVEEYRERFEELTVDLPHVTSDILESAFLNGLR 353
Query: 242 DELRRDVMLHTPISIVKAVSLAKLFE--EKIAANFNPKQPLKPYTPAQPHQHRAPFNPTR 299
LR V+ P+++ V +AKL E E+ A ++ + Q + APFN
Sbjct: 354 RSLRDQVVRCRPVNLADIVEIAKLIESQERNAVSYQVRN--------QARTNTAPFNNQV 405
Query: 300 NDQNQTIEKAPNLPLLPTPPTRPMSHLQKNPAIKRISPAEMQLRREKGLCYFCDDKFSFS 359
+ ++ +++AP P P+R + + + +P C +C D++
Sbjct: 406 STGSRVVDRAPTRQ--PFIPSRDTTRASGSGEARNSNP-----------CRYCGDRWFQG 452
Query: 360 HKCPNKQLMLLELDDDLD---PPDTPSQTAVTSDTETQEVAEHH--LSLNALKGATGMGV 414
HKC ++L L + ++++ P +T + E AE ++L++L +
Sbjct: 453 HKCKPQKLKGLAITEEVEEESPLIEELNEPLTEEEGDPEPAEGFKVMTLSSLNDESQEQS 512
Query: 415 IRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMKAEGVVR 474
++ +GYIG V +L+D G++ +FI +V + T V VG G+ +K+ G
Sbjct: 513 MKMRGYIGNTKVVLLVDSGATCNFISEALVREKGWLVTQTRSFGVKVGGGRIIKSSGKCV 572
Query: 475 KLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMDGKFVTLQG 534
+ L+VQ I+ YL + D++LG WLA LG A++ ++ + + +V+L G
Sbjct: 573 DIPLEVQGIEFVQDYYLFDLGDLDLVLGFSWLAGLGETRANWRDLRISWQIGRTWVSLYG 632
Query: 535 ESDNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEPEMATLLHTYR 594
+ D + R+ + L + + E + ++P + LL Y+
Sbjct: 633 DPDLCRGQISMRSMERVIKYTGTAYLLELASL----FESKKQEEQTALQPAIQRLLDQYQ 688
Query: 595 EIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQPSL 654
+FQ P+ LPP R H I L+EG+ PV ++PYRY +QK +IEK+V++ML II+PS+
Sbjct: 689 GVFQTPQLLPPVRNREHAITLQEGSSPVNIRPYRYSFAQKNEIEKLVREMLNAQIIRPSV 748
Query: 655 SPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRS 714
SP+SSP++LVKKKDG WR C DYRALN TI D +P+P ++ELLDEL GA F+KLDL+S
Sbjct: 749 SPYSSPVLLVKKKDGGWRFCVDYRALNEATIPDKYPIPVIEELLDELKGATVFSKLDLKS 808
Query: 715 GYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFF 774
GY QI +K D +KTAF+TH+GHYE+LVMPFGLT+AP+TFQ +MN LF+P LRK VLVFF
Sbjct: 809 GYFQIRMKLSDVEKTAFKTHEGHYEFLVMPFGLTNAPSTFQSVMNDLFRPYLRKFVLVFF 868
Query: 775 DDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKI 834
DDILVYSP +HLKH+E V Q+L + YA KC+FG T + YLGH++S GVA D
Sbjct: 869 DDILVYSPDMKTHLKHLETVLQLLHLHQFYANFKKCTFGSTRISYLGHIISEQGVATDPE 928
Query: 835 KVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAFKWDESTAKAF 894
KV A+L+WP P ++ +LRGFLG TGYYRRF+++Y IA PL + LKK++F W+E+ AF
Sbjct: 929 KVEAMLQWPLPKSVTELRGFLGFTGYYRRFVKNYGQIARPLRDQLKKNSFDWNEAATSAF 988
Query: 895 DTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASRMQLQSA 954
LK A++ PVLVLPDF Q F +ETDASG G+GAVLSQ IA+ S+ +S+ +++S
Sbjct: 989 QALKAAVSALPVLVLPDFQQEFTVETDASGMGIGAVLSQNKRLIAFLSQAFSSQGRIRSV 1048
Query: 955 YTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHKFIGFDFQI 1014
Y RE AI A+ K++HYL +FI++TDQ+SL+ LL+Q + QQ W K G ++I
Sbjct: 1049 YERELLAIVKAVTKWKHYLSSKEFIIKTDQRSLRHLLEQKSVSTIQQRWASKLSGLKYRI 1108
Query: 1015 EYKPGKDNQAADALSR------VMSLSWSAPEHDFLEQLKKEIGNDSHLQTIVQQCVNNT 1068
EYKPG DN+ ADALSR + L+ + P L LK EI D L I++
Sbjct: 1109 EYKPGVDNKVADALSRRPPTEALSQLTITGPPTIDLTALKAEIQQDHELSQILKNWAQGD 1168
Query: 1069 MDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTAQFYWP 1128
D ++ V +GL+Y K LVIP+ S I ++L+++H +PIGGH G +T R+T++ YW
Sbjct: 1169 HHDSDFTVADGLIYRKGCLVIPVGSPFIPKMLEKFHTSPIGGHEGALKTFKRLTSEVYWR 1228
Query: 1129 NMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFGFTVI 1188
+R+ + +I+ C CQ+ K + AGLL PLPIP+Q+W DV++DF+ GLP S F I
Sbjct: 1229 GLRKDVVNYIKGCQICQENKYSTLSPAGLLSPLPIPQQIWSDVSLDFVEGLPSSNRFNCI 1288
Query: 1189 MVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQHLF 1248
+VVVDRLSKY+HF+PLK ++ +TV EAF+ VVKLHG P +++SDRD++F S FW LF
Sbjct: 1289 LVVVDRLSKYSHFIPLKHPFTAKTVVEAFIRDVVKLHGFPNTLVSDRDRIFLSGFWSELF 1348
Query: 1249 QMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYNTFLHT 1308
++QGT L ST YHPQTDGQ+E VN+CLE YLRCF + P +WF+ L W E WYNT H+
Sbjct: 1349 KLQGTGLQKSTAYHPQTDGQTEVVNRCLESYLRCFAGRRPTSWFQWLPWAEYWYNTSYHS 1408
Query: 1309 SLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVMKSNA 1368
+ +PF+A+YGREPP+L RY ++ V++ L DRD +LVEL+ENL AQ MK A
Sbjct: 1409 ATKTTPFQAVYGREPPVLLRYGDIPTNNANVEELLKDRDGMLVELRENLEIAQAQMKKAA 1468
Query: 1369 DKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYKLQLPE 1428
DK R+DV+FE+ + V +KL+PYRQSSVA RKN KL RYFGPF V+ ++G VAYKLQLPE
Sbjct: 1469 DKSRRDVAFEIDEWVYLKLRPYRQSSVAHRKNEKLSQRYFGPFKVLHRIGQVAYKLQLPE 1528
Query: 1429 TARIHPVFHVSQLK--IFKGLTTEPYFPLPLTTMEEGPVIQPEVILNVRNIIRGDRKVEQ 1486
+ IHPVFHVSQLK + T + + T+E PE +L++R +
Sbjct: 1529 HSTIHPVFHVSQLKRAVPPSFTPQELPKILSPTLEWN--TGPEKLLDIRQ--SNTNSGPE 1584
Query: 1487 LLVKWKDMQNSEATWEDKQEMLDSYPNLNLEDKIVL 1522
+LV+W + E+TWE ++ YP+ +LEDK+ L
Sbjct: 1585 VLVQWSGLSTLESTWEPLLTLVQQYPDFDLEDKVSL 1620
>dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thaliana]
gi|12322008|gb|AAG51046.1| gypsy/Ty-3 retroelement
polyprotein; 69905-74404 [Arabidopsis thaliana]
Length = 1499
Score = 1095 bits (2832), Expect = 0.0
Identities = 582/1410 (41%), Positives = 843/1410 (59%), Gaps = 40/1410 (2%)
Query: 118 KLEFPRFNGKHVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRS----R 173
K++FPRF+G + +W+FK E++FG +TP+ ++ +A++H + W Q +S
Sbjct: 111 KIDFPRFDGTRLKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLE 170
Query: 174 PFQSWNDFTRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRVYGLSNDALI 233
W + + L+ F D P A L LQ+ + +Y+ +F + RV LS + L+
Sbjct: 171 VLYDWKGYVKLLKERFEDDCDD-PMAELKHLQETDGIIDYHQKFELIKTRV-NLSEEYLV 228
Query: 234 DCFVSGLKDELRRDVMLHTPISIVKAVSLAKLFEEKIAANFNPKQPLKPYTPAQPHQHRA 293
+++GL+ + + V + P ++ + L K +E+ +PK+P
Sbjct: 229 SVYLAGLRTDTQMHVRMFQPQTVRHCLFLGKTYEKA-----HPKKPANTTWSTNRSAPTG 283
Query: 294 PFNPTRNDQNQTIEKAPNLPLLPTPPTRPMSHLQKNPAIKRISPAEMQLRREKGLCYFCD 353
+N + + + N +P K++S EM RR KGLCYFCD
Sbjct: 284 GYNKYQKEGESKTDHYGNKGNFKPVSQQP----------KKMSQQEMSDRRSKGLCYFCD 333
Query: 354 DKFSFSHKCPNKQLMLLELDDDLDPPDTPSQTAVTSDTETQEVAEHHLSLNALKGATGMG 413
+K++ H +K+ L +D D + D + D ++ S+NA+ G G
Sbjct: 334 EKYTPEHYLVHKKTQLFRMDVDEEFEDAREELVNDDDEHMPQI-----SVNAVSGIAGYK 388
Query: 414 VIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMKAEGVV 473
+R KG + IL+D GS+ +F+ P L ++ V V +G+ ++ EG V
Sbjct: 389 TMRVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGKV 448
Query: 474 RKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMDGKFVTLQ 533
S K+Q L+P+ G D++LG WL +LG ++ +++F + + V L
Sbjct: 449 TDFSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLH 508
Query: 534 GESDNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIED----NWEGMPVNIEPEMATL 589
G + + ++LQ + +Q++ + + N + E + +
Sbjct: 509 GLTSGSVREVKAQKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEESVVEEV 568
Query: 590 LHTYREIFQIPKGLPPNREL-SHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEG 648
L+ Y +IF P LPP RE +H+I L EG+ PV +PYRY QK +I+K+V+D+L G
Sbjct: 569 LNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNG 628
Query: 649 IIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFT 708
+Q S SP++SP++LVKKKDGTWR C DYR LN +T+KDSFP+P +++L+DEL GA F+
Sbjct: 629 TVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFS 688
Query: 709 KLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRK 768
K+DLR+GYHQ+ + P+D QKTAF+TH GH+E+LVMPFGLT+APATFQ LMN +F+P LRK
Sbjct: 689 KIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRK 748
Query: 769 CVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSG 828
VLVFFDDILVYS S H +H++ VF+++ N L+AKLSKC+F + +VEYLGH +S G
Sbjct: 749 FVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQG 808
Query: 829 VAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAFKWDE 888
+ D K+ AV EWP PT LKQLRGFLGL GYYRRF+RS+ IAGPL L K DAF+W
Sbjct: 809 IETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDAFEWTA 868
Query: 889 STAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASR 948
+AF+ LK A+ APVL LP F + FV+ETDA G G+GAVL Q GHP+AY S+++ +
Sbjct: 869 VAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAYISRQLKGK 928
Query: 949 MQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHKFI 1008
S Y +E A+ A+ K+RHYLL FI++TDQ+SLK LL+Q L TP QQ WL K +
Sbjct: 929 QLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLL 988
Query: 1009 GFDFQIEYKPGKDNQAADALSR-----VMSLSWSAPEHDFLEQLKKEIGNDSHLQTIVQQ 1063
FD++I+Y+ GK+N ADALSR V+ ++ + E D L+ ++ NDS LQ I+
Sbjct: 989 EFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAGYANDSQLQDIITA 1048
Query: 1064 CVNNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTA 1123
+ + + +L K ++V+P N+ + IL H + +GGH+G T RV
Sbjct: 1049 LQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRVKG 1108
Query: 1124 QFYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSF 1183
FYW M + IQ +I +C TCQQ KS GLLQPLPIP+ +W +V+MDFI GLP+S
Sbjct: 1109 LFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLPVSG 1168
Query: 1184 GFTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKF 1243
G TVIMVVVDRLSK AHF+ L YS TVA A+++ V KLHG P SI+SDRD VFTS+F
Sbjct: 1169 GKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDRDVVFTSEF 1228
Query: 1244 WQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYN 1303
W+ F +QG L +++ YHPQ+DGQ+E VN+CLE YLRC P+ W K L E WYN
Sbjct: 1229 WREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWYN 1288
Query: 1304 TFLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQV 1363
T H+S M+PF+ +YG+ PP+ Y S V + L +R+ +L+ LK +L+RAQ
Sbjct: 1289 TNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHR 1348
Query: 1364 MKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYK 1423
MK AD+ R + FE+GD V VKLQPYRQ SV +R N KL +YFGP+ +I + G VAYK
Sbjct: 1349 MKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAYK 1408
Query: 1424 LQLPETARIHPVFHVSQLKIFKG-LTTEPYFPLPLTTMEEGPVIQPEVILNVRNIIRGDR 1482
L LP +++HPVFHVSQLK+ G ++T + P + M++ PE ++ + + R +
Sbjct: 1409 LALPSYSQVHPVFHVSQLKVLVGNVSTTVHLP---SVMQDVFEKVPEKVVERKMVNRQGK 1465
Query: 1483 KVEQLLVKWKDMQNSEATWEDKQEMLDSYP 1512
V ++LVKW + EATWE ++ ++P
Sbjct: 1466 AVTKVLVKWSNEPLEEATWEFLFDLQKTFP 1495
>ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1495
Score = 1076 bits (2783), Expect = 0.0
Identities = 597/1427 (41%), Positives = 833/1427 (57%), Gaps = 75/1427 (5%)
Query: 118 KLEFPRFNGK-HVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSRPFQ 176
KLEFP ++GK L W+ + E + G TP+ ++ AS+HL + W+ + +
Sbjct: 109 KLEFPTYDGKGDPLPWLNRCETFRGQ-KTPETRKVWYASLHLIGDAQLWYYRIELNSGEP 167
Query: 177 SWNDFTRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRVYGLSNDALIDCF 236
SW F + + FGP + D P L L++ +V Y F AL+ R LS + F
Sbjct: 168 SWRRFVQLVHTRFGPPMTDSPLGELTALRRTGTVENYVNSFLALACRDVELSESQQVQLF 227
Query: 237 VSGLKDELRRDVMLHTPISIVKAVSLAKLFEEKIAANFNPKQPLKPYT-----PAQPHQH 291
+GL + L+ DV L P S+ A+ LA+ +E++ A P P P T P+ P
Sbjct: 228 TAGLVNPLKTDVALCRPRSLDDAIMLARAYEQR--ATLGPTDPSAPRTGRVPRPSLPASS 285
Query: 292 RAPFNPTRNDQNQTIEKAPNL-PLLPTPPTRPMSHLQKNPAIKRISPAEMQLRREKGLCY 350
A + + + A PL+ P KR+SPAEM RR +GLCY
Sbjct: 286 AASASASTTSADVAASTAAGKQPLVSALPR------------KRLSPAEMAQRRSEGLCY 333
Query: 351 FCDDKFSFSHKCPNKQLMLLELDDDLDPPDTPSQTAVTSDTETQEVAEHHLSLNALKG-- 408
CD+K+ H+C K+ ++E+ P DT + T + + E + L+AL G
Sbjct: 334 NCDEKYVAGHRC--KKSFVIEVISF--PEDTGDEEDSTPEAHAITLDEPSIFLHALAGIS 389
Query: 409 ATGMGVIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMK 468
A I+ +G + LLD GS+ +FI I H ++P++ +V V NG +
Sbjct: 390 APKFNTIKVWARLGSQELVALLDSGSTHNFINDAIAHQASVPLQRRPGLSVAVANGDRVP 449
Query: 469 AEGVVRKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMDGK 528
+ G + + + + Y LP+ G D++LGA WL +LGP + D+S L F
Sbjct: 450 SPGRCPPQRVSIGSHEFDIDFYALPLGGYDIVLGAQWLGTLGPTLWDFSRQSLAFGPAHD 509
Query: 529 FVTLQGESDNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEPEMAT 588
VT D PA + + A+ +G P ++ M
Sbjct: 510 RVTWTS-IDAAPAPA----------------------LAAAI-----DGQPGDL---MTD 538
Query: 589 LLHTYREIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEG 648
LL +++F P GLPP R L H I L+ G V V+PYRY H QK+++E+ DML G
Sbjct: 539 LLDVLKDLFTEPHGLPPERHLCHRIRLEAGVSAVAVRPYRYAHIQKDELERQCDDMLRHG 598
Query: 649 IIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFT 708
+I+PS S FSSP +L+KK DG+WR C DYRALN TIKD FP+P +EL DEL GA++FT
Sbjct: 599 VIRPSSSAFSSPALLIKKCDGSWRFCVDYRALNDKTIKDKFPIPVAEELFDELRGAKFFT 658
Query: 709 KLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRK 768
KLD+RSGYHQ+L+ P+D KTAFRTHQG +E+LVMPFGLT+APATFQ LMN + P LR+
Sbjct: 659 KLDMRSGYHQVLMHPDDVHKTAFRTHQGLFEFLVMPFGLTNAPATFQALMNDVLLPFLRR 718
Query: 769 CVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSG 828
VLVFFDDIL+YS SW HL+HV V Q L + L+ K SKC FG+T V YLGHV+SG G
Sbjct: 719 FVLVFFDDILIYSSSWSEHLRHVRTVLQTLQDHCLHLKRSKCEFGLTSVAYLGHVISGDG 778
Query: 829 VAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAFKWDE 888
VAMD+ KV AVL+WP P ++ +RGFLGL GYYRRFIR + IA PLT LL+K+ F+W +
Sbjct: 779 VAMDRSKVQAVLDWPVPKTVRAVRGFLGLAGYYRRFIRDFGAIAAPLTALLRKEGFRWSD 838
Query: 889 STAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASR 948
A AF L+ A+T APVL LPDF++ F++E DASGTG+GAVL QGG P+A+FS +A R
Sbjct: 839 EAAAAFRKLQHALTAAPVLQLPDFNRDFIVECDASGTGLGAVLHQGGGPVAFFSMPIAPR 898
Query: 949 MQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHKFI 1008
+AY RE + A+ +R YL G +FI+RTD SL+ LLDQ L T Q W K +
Sbjct: 899 HAKLAAYERELIGLVKAVRHWRPYLWGRRFIIRTDHYSLRFLLDQRLSTIPQHHWASKLL 958
Query: 1009 GFDFQIEYKPGKDNQAADALSR-----VMSLSWSAPEHDFLEQLKKEIGNDSHLQTIVQQ 1063
GFDF +EYKPG N ADALSR + SAP L+ +++E+ + L ++
Sbjct: 959 GFDFAVEYKPGTANVVADALSRRDEHLAEAFVLSAPHFSLLDDVRREVASTPSLASLRDD 1018
Query: 1064 CVNNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTA 1123
+ + K+GL+ K R+ IP S L+ +L+ H GH G +T+ R+ A
Sbjct: 1019 IIRGAKPP-PWAFKDGLIVLKDRVFIPESSPLLPAVLELAHG---HGHEGTQKTMFRLRA 1074
Query: 1124 QFYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSF 1183
F+ P R +Q F+ AC+TCQ+ K+ + AGLLQ LP+P VW D+ MDF+ GLP
Sbjct: 1075 DFHVPRDRVLVQDFVRACLTCQRNKTEHLQPAGLLQSLPVPSAVWADIAMDFVEGLPRVH 1134
Query: 1184 GFTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKF 1243
G TVI+ VVDR SK+AHF+PL Y+ TVA AF +V+LHG+P SI+SDRD VFTSKF
Sbjct: 1135 GKTVILTVVDRFSKFAHFIPLSHPYTATTVAAAFFGDIVRLHGVPSSIVSDRDPVFTSKF 1194
Query: 1244 WQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYN 1303
W LF++ G L++++ +HPQ+DGQSE NK + MYLRC T P+ W + L W E YN
Sbjct: 1195 WTELFRLAGVQLNLTSAFHPQSDGQSEVTNKIIAMYLRCLTGDRPRQWLRWLPWAEYCYN 1254
Query: 1304 TFLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQV 1363
T SL +PF +YGR PP L Y ++ VQ+ + DRD+ LV +++ L +AQQV
Sbjct: 1255 TSYQASLRTTPFHVVYGRSPPSLRSYEPGSTCLPAVQRSMQDRDQFLVAIRDRLEQAQQV 1314
Query: 1364 MKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYK 1423
K DKK ++++F+VGD V ++L +S+ R KLG +++GP+ ++A +G VAY+
Sbjct: 1315 YKQAYDKKHRELNFDVGDWVWLRLLHRPMASLDTRGRGKLGPKFYGPYQIVACIGSVAYR 1374
Query: 1424 LQLPETARIHPVFHVSQLKIFKGLTTEPYFPLPLTTMEEGPV-IQPEVILNVRNIIRGDR 1482
L+LP AR+H VFHV LK F+G PLP T + G V ++P+ + R + RG
Sbjct: 1375 LRLPPGARLHDVFHVGLLKPFRGEPPSTLPPLPPT--QHGQVCLEPQSVSRSR-LARG-- 1429
Query: 1483 KVEQLLVKWKDMQNSEATWEDKQEMLDSYPNLNLEDKIVLEGEGNVM 1529
V Q+LV+WK+ ++A+W E YP+ LED+++LEG +VM
Sbjct: 1430 -VRQVLVQWKNKPAADASWLSLDEFRALYPDFQLEDELLLEGGRDVM 1475
>gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532578|ref|NP_920591.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|15217201|gb|AAK92545.1| Putative retroelement [Oryza
sativa]
Length = 1476
Score = 1034 bits (2673), Expect = 0.0
Identities = 590/1467 (40%), Positives = 833/1467 (56%), Gaps = 62/1467 (4%)
Query: 74 SSSSVISATVVGSQSTFVGHTQSAVVGKQSTSSMSSQPFQVR---HIKLEFPRFNGK-HV 129
SSS + + + + + K ST S S P R H + EFP+++GK
Sbjct: 21 SSSEATTKAIEDNTQAIAALSVARTTEKASTES-SGTPAPDRPPKHWRPEFPKYDGKTDP 79
Query: 130 LDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSRPFQSWNDFTRALELDF 189
L +I + E +F + AER +AS +L+ W+ V + +W F L L +
Sbjct: 80 LAFINRCESFFIQQHVIPAERTWMASYNLQDGAQLWYMHVQDNEGTPTWERFKELLNLRY 139
Query: 190 GPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRVYGLSNDALIDCFVSGLKDELRRDVM 249
GP + P L ++ +V +Y F AL R L + F GL L V
Sbjct: 140 GPPLRSVPLFELSACRRTSTVEDYQDRFQALLPRAGRLEEAQQVQLFTGGLLPPLSLQVQ 199
Query: 250 LHTPISIVKAVSLAKLFEEKIAANFNPKQPLKPYTPAQPHQHRAPFNPTRNDQNQTIEKA 309
P S+ +A+SLA+ FE ++PY F T + + A
Sbjct: 200 QQKPASLEEAMSLARQFE-----------LMEPYL----------FPATTSARGVLPTPA 238
Query: 310 PNLPLLPTPPTRPMSHLQKNPAIKRISPAEMQLRREKGLCYFCDDKFSFSHKCPNKQLML 369
P P P + + +KR+S A+ + RR GLCY CD+K+S SH K+L
Sbjct: 239 PRPSTGPVVKPAPATVTVEGRPVKRLSQAQQEERRRLGLCYNCDEKYSRSHNKVCKRLFF 298
Query: 370 LELDDDLDPPDTPSQTAVTSDTETQEVAEHHLSLNALKGATGMGVIRFKGYIGPISVSIL 429
+E + DT V DTE V SL+A+ G I + +G S+ L
Sbjct: 299 VEGGAIEEGDDT-----VEDDTEEATVEAPVFSLHAVAGIPLGKPILLQVTLGAASLVAL 353
Query: 430 LDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMKAEGVVRKLSLKVQDIDITVPA 489
+D GS+ +FI LP++ + V NG+ + GV+R+ + +Q + V
Sbjct: 354 VDTGSTHNFIGEDAALRTGLPVQPRPRLTATVANGEKVSCPGVLRRAPITIQGMAFDVDL 413
Query: 490 YLLPVAGSDVILGAPWLASLGPHVA-DYSVSKLKFYMDGKFVTLQGESDNKPA-VSQLNH 547
Y++P+AG D++LG W+A LG +A D + + F G+ V+ Q ++ A V ++
Sbjct: 414 YVMPLAGYDMVLGTQWMAHLGTTIAWDVTTGTVSFQHQGRTVSWQSLPPHQRADVHAVST 473
Query: 548 FRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEPEMATLLHTYREIFQIPKGLPPNR 607
L S +PA+++ LL ++ ++F P+GLPP R
Sbjct: 474 GTSLVAATGSSSSTPAPTTEPALLDG---------------LLGSFDDVFAEPRGLPPPR 518
Query: 608 ELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQPSLSPFSSPIILVKKK 667
H I L GA PV V+PYRYP + K+++E+ M+E+G+I+ S S FSSP++LVKK
Sbjct: 519 GRDHAIHLLPGAPPVAVRPYRYPVAHKDELERQCAVMMEQGLIRRSTSAFSSPVLLVKKA 578
Query: 668 DGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRSGYHQILLKPEDRQ 727
DG+WR C DYRALNAITIKD++P+P VDELLDELHGA++FTKLDLRSGYHQ+ ++ ED
Sbjct: 579 DGSWRFCVDYRALNAITIKDAYPIPVVDELLDELHGAKFFTKLDLRSGYHQVRMRAEDVA 638
Query: 728 KTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFDDILVYSPSWHSH 787
KTAFRTH G YE+LVMPFGL +APATFQ LMN + + LR+ VLVFFDDIL+YS +W H
Sbjct: 639 KTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDILRIYLRRFVLVFFDDILIYSNTWADH 698
Query: 788 LKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIKVIAVLEWPTPTN 847
L+H+ V +L Q+ L+ K SKC+FG++ + YLGH++ +GV+MD KV AV++WP P +
Sbjct: 699 LRHIRAVLLLLRQHRLFVKRSKCAFGVSSISYLGHIIGATGVSMDPAKVQAVVDWPQPRS 758
Query: 848 LKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAFKWDESTAKAFDTLKQAITTAPVL 907
+ +RGFLGL GYYR+F+ Y TIA PLT L KK+ F+W + A AF LK A+TTAPVL
Sbjct: 759 ARTVRGFLGLAGYYRKFVHDYGTIAAPLTALTKKEGFRWSDEVATAFHALKHAVTTAPVL 818
Query: 908 VLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASRMQLQSAYTREFYAITTALA 967
LPDF +PFV+E DAS G GAVL Q HP+A+FS+ +A R + +AY RE + A+
Sbjct: 819 ALPDFVKPFVVECDASTHGFGAVLLQDKHPLAFFSRPVAPRHRALAAYERELIGLVLAIR 878
Query: 968 KFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHKFIGFDFQIEYKPGKDNQAADA 1027
+R YL G F++RTD SLK LLDQ L T Q W+ K +GFDF +EYK G N ADA
Sbjct: 879 HWRPYLWGRAFVVRTDHYSLKYLLDQRLATIPQHHWVGKLLGFDFTVEYKSGASNVVADA 938
Query: 1028 LSRVMS-----LSWSAPEHDFLEQLKKEIGNDSHLQTIVQQCVNNTMDDINYMVKEGLLY 1082
LSR + L+ SAP D++E+L+ + L ++ + + +++G++
Sbjct: 939 LSRRDTDEGAVLALSAPRFDYIERLRAAQTTEPAL-VAIRDAIQAGTRSAPWALRDGMVM 997
Query: 1083 WKHRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTAQFYWPNMRQHIQKFIEACV 1142
+ RL IP S L+H+IL H GH GV RTL R+ F+ P MR+ +Q+F+ AC
Sbjct: 998 FDSRLYIPPSSPLLHEILAAIH---TDGHEGVQRTLHRLRRDFHSPAMRRVVQEFVRACD 1054
Query: 1143 TCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFGFTVIMVVVDRLSKYAHFM 1202
TCQ+ KS + GLL PLP+P VW D+ +DF+ LP G TVI+ VVDR SKY HF+
Sbjct: 1055 TCQRNKSEHLHPGGLLLPLPVPTTVWADIGLDFVEALPRVGGKTVILTVVDRFSKYCHFI 1114
Query: 1203 PLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQHLFQMQGTTLSMSTTYH 1262
PL Y+ +VA+AF +V+LHG+P+S++SDRD VFTS FW+ L ++ GT + M+T H
Sbjct: 1115 PLAHPYTAESVAQAFYADIVRLHGIPQSMVSDRDPVFTSSFWRELMRLTGTKMHMTTAIH 1174
Query: 1263 PQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYNTFLHTSLGMSPFKALYGRE 1322
PQ+DGQ+EA NK + MYLRCFT P+ W + L W E YNT TSL +PF+ +YGR+
Sbjct: 1175 PQSDGQTEAANKVIVMYLRCFTGDRPRQWVRWLPWAEYIYNTAYQTSLRDTPFRVVYGRD 1234
Query: 1323 PPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVMKSNADKKRKDVSFEVGDQ 1382
PP++ Y + V + + DRD+ L +++ L +AQ K DK + VS+EVGD
Sbjct: 1235 PPIIRSYEPGETRVAAVARSMADRDEFLADVRYRLEQAQATHKKYYDKGHRAVSYEVGDL 1294
Query: 1383 VLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYKLQLPETARIHPVFHVSQLK 1442
VL++L+ +S+ KL RYFGP+ V+ + VA +L+LP A++H VFHV LK
Sbjct: 1295 VLLRLRHRAPASLPQVSKGKLKPRYFGPYRVVEVINPVAVRLELPPRAKLHDVFHVGLLK 1354
Query: 1443 IFKGLTTEPYFPLPLTTMEEGPVIQPEVILNVRNIIRGDRKVEQLLVKWKDMQNSEATWE 1502
F G P P L + G I PE R+ R R V Q+LV WK + ATWE
Sbjct: 1355 KFVG--AAPPSPPALPAVHHG-AIDPEPERVTRS--RLARGVRQVLVHWKGESAASATWE 1409
Query: 1503 DKQEMLDSYPNLNLEDKIVLEGEGNVM 1529
D + YP LED++ LE +VM
Sbjct: 1410 DLDTFKERYPAFQLEDELALEEGRDVM 1436
>ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1522
Score = 1030 bits (2662), Expect = 0.0
Identities = 590/1431 (41%), Positives = 830/1431 (57%), Gaps = 61/1431 (4%)
Query: 118 KLEFPRFNGKHVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSRPFQS 177
K++FP+F+G V W+ E YF Y + ++ AS+++ + W+Q + R + +
Sbjct: 130 KMDFPKFDGTDVCVWVDNCETYFALYQITEGFKVSAASLNMIGDAAHWYQAWKQERGWPT 189
Query: 178 WNDFTRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSN--RVYGLSNDAL--I 233
W A+ +F +I L L Q +V+EY +F L R+Y + L +
Sbjct: 190 WEQLREAVLNEFEINIKRAKMEELLLLTQTGTVSEYRSKFLQLVYHIRLYDPATSGLFLV 249
Query: 234 DCFVSGLKDELRRDVMLHTPISIVKAVSLAKLFEEKIAANFNPKQPLKPYTPAQPHQHRA 293
FV GLKDELR V P ++ +A +A FE A N K K +
Sbjct: 250 SRFVMGLKDELRCFVAAQEPETVHQAARVALAFE---GAFCNRKVAFK----------KD 296
Query: 294 PFNPTRNDQNQTIEKAPNLPLLPTPPTRPMSHLQKNPAIKRISPAEMQLRREKGLCYFCD 353
N D+ + P+ L K +K + RR GLC+ C
Sbjct: 297 VGNVKFGDKGKV----------------PVGDLWKAQQLK-------EYRRTHGLCFKCG 333
Query: 354 DKFSFSHKCPNKQLMLLELDDDLDPPDTPSQTAVTSDTETQEVAEHH--LSLNALKGATG 411
+K+S +H C + L+ + D + + T +++ + + LSL A+ G +
Sbjct: 334 EKYSPAHTCGKTEGAQLKTMEVSSSDDVLTDEILDVVTAFEQLPDDNMLLSLQAVAGTSA 393
Query: 412 MGVIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMKAEG 471
++ + G V IL+D GSS SFI + LNL + V V NG+ ++ E
Sbjct: 394 THSLQLRALAGNQVVIILVDSGSSHSFINADLCSKLNLSTDPIPVSTVKVANGETLQCEA 453
Query: 472 VVRKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMDGKFVT 531
V + S +Q +L + G D++LG WL+ P +++ L+F GK V
Sbjct: 454 QVSEFSWWIQGCTFVSSLKVLSMGGHDIVLGMDWLSKFSPMTCNWADRWLEFTYQGKLVK 513
Query: 532 LQG-ESDNKPAVSQLN--HFRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEPEMAT 588
LQG +S +S+++ + Q N I L + + + + +P +I+
Sbjct: 514 LQGIQSHQLQYLSEVSSDQMMKWQVGNDIWALAVVDCLSSPLCDS---AVPASIQD---- 566
Query: 589 LLHTYREIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEG 648
+L Y +FQ GLPP+REL H I L GA PV +PYRY +QK++IEK VQ+MLE G
Sbjct: 567 VLQKYSSVFQPSAGLPPHRELDHSIPLVPGAIPVNSRPYRYSPAQKDEIEKQVQEMLESG 626
Query: 649 IIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFT 708
+I S SPF+SP++LVKKKD TWR C DYR LNAITIK+ FP+P VDELLDEL G ++F+
Sbjct: 627 LISRSCSPFASPVLLVKKKDNTWRFCVDYRRLNAITIKNKFPLPIVDELLDELAGTRFFS 686
Query: 709 KLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRK 768
KLDLRSGYHQI +K D +KTAF+TH GH+++ VMPFGLT+APATFQ LMN +F+P LRK
Sbjct: 687 KLDLRSGYHQIRMKETDEEKTAFKTHHGHFQFRVMPFGLTNAPATFQCLMNSIFEPYLRK 746
Query: 769 CVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSG 828
VLVF DDILVYSPS +H H++ V Q+L Q+ L AKLSKCSF +++EYLGH++S G
Sbjct: 747 FVLVFMDDILVYSPSLETHAIHLDTVLQVLQQHQLSAKLSKCSFAASQLEYLGHIISADG 806
Query: 829 VAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDA-FKWD 887
VA D K + +WP PTN+ +LRGFLGLTGYYR+F+++Y IA PLT LL+K+A F W
Sbjct: 807 VATDPEKTRIMRDWPVPTNVTELRGFLGLTGYYRKFVKNYGVIAKPLTVLLQKNAKFIWT 866
Query: 888 ESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMAS 947
+S AF LK A+ + PVL LPDF++ FVLETDA TG+GAVLSQ GHPIA++SK +
Sbjct: 867 DSANSAFLQLKHAMCSTPVLALPDFTKTFVLETDACATGIGAVLSQEGHPIAFYSKALGM 926
Query: 948 RMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHKF 1007
Q S Y +EF AI A+ K+R YLL F ++TD +SL L DQ L + Q+ + K
Sbjct: 927 ANQKLSIYEKEFLAIMMAIDKWRSYLLRGPFTIKTDHQSLCHLDDQILGSELQRKAMTKL 986
Query: 1008 IGFDFQIEYKPGKDNQAADALSRVMSL--SWSAPEHDFLEQLKKEIGNDSHLQTIVQQCV 1065
IG ++ +YK G DN++ADALSRV L + S P +++++ D+ Q ++ +
Sbjct: 987 IGLQYKFQYKRGVDNKSADALSRVGHLFATVSGPYPKWIQEVVNSYATDADAQQLLTELA 1046
Query: 1066 NNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTAQF 1125
++ +D +M+ GL+ ++ + S L +++ +H +PIGGH+G+ T R+ F
Sbjct: 1047 VSSPNDKGFMLSGGLIKKHDKIWVGANSGLQSKLIAVFHSSPIGGHSGIHATYHRLKKLF 1106
Query: 1126 YWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFGF 1185
W M+Q +++F++ C CQQAK + Y GLLQPLPIPE W D++MDFI GLPLS G
Sbjct: 1107 VWTGMKQAVEEFVQQCGVCQQAKHEHCKYPGLLQPLPIPEGSWQDISMDFIEGLPLSKGA 1166
Query: 1186 TVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQ 1245
I+VVVDR +KYAHF+ LK +S VAE F++ V +L+GMPKSI+SDRD+VFTS FW+
Sbjct: 1167 NTILVVVDRFTKYAHFLSLKHPFSASQVAELFLDRVAQLYGMPKSIVSDRDRVFTSSFWK 1226
Query: 1246 HLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYNTF 1305
LF G L+MST YHPQ+DGQ+E VN+CLEMYLRC P W L + WYNT
Sbjct: 1227 TLFARFGIPLNMSTAYHPQSDGQTERVNQCLEMYLRCAVANTPSKWASWLPLAQFWYNTS 1286
Query: 1306 LHTSLGMSPFKALYGREPP--MLTRYSVNNSDPTEVQQQ----LMDRDKLLVELKENLLR 1359
HTSL SP KALYG +P +L SV SD + + L R L+ +L R
Sbjct: 1287 FHTSLKCSPHKALYGSDPSYGLLPSLSVEASDESSSSKDATALLKARSFYSSTLQHHLAR 1346
Query: 1360 AQQVMKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGV 1419
AQ MK AD KR F+VGD V +KLQPY Q+SV R +KL M+YFGPF ++ +VG
Sbjct: 1347 AQNHMKQVADSKRTLRVFQVGDSVFLKLQPYAQTSVVNRPCHKLAMKYFGPFPILERVGS 1406
Query: 1420 VAYKLQLPETARIHPVFHVSQLKIFKGLTTEPYFPLPLTTMEEGPVIQPEVILNVRNIIR 1479
VAYKLQLP +++H VFHVSQLK Y LP + + P IL+ R + +
Sbjct: 1407 VAYKLQLPPASQVHSVFHVSQLKPSVPSHVPVYTSLPDVVALDVEDLIPTEILDCRMVKK 1466
Query: 1480 GDRKVEQLLVKWKDMQNSEATWEDKQEMLDSYPNLNLEDKIVLEGEGNVMS 1530
G+ + Q+ V+W + ++ ATWED + +P ++ + G V+S
Sbjct: 1467 GNAAIVQVRVRWGSLPDNMATWEDYDVIRTRFPAVSALGQAGSPAGGTVIS 1517
>gb|AAL75999.1| putative polyprotein [Zea mays]
Length = 2749
Score = 1030 bits (2662), Expect = 0.0
Identities = 578/1431 (40%), Positives = 795/1431 (55%), Gaps = 83/1431 (5%)
Query: 115 RHIKLEFPRFNGK-HVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSR 173
R+ K++FP ++G L+W+ + EQ+F T +R +AS HL+ W+ + +
Sbjct: 469 RYYKIDFPTYDGSVDPLNWLNQCEQFFRGQRTLVTDRTWLASYHLKGAAQTWYYALEQDE 528
Query: 174 PFQSWNDFTRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRVYGLSNDALI 233
+W F L FGP + + L +L +V +Y F A+ L
Sbjct: 529 GMPTWGRFKEVCTLRFGPPVRGTRLSELARLPFTSTVQDYADRFNAMLGHTRKLDAQQKA 588
Query: 234 DCFVSGLKDELRRDVMLHTPISIVKAVSLAKLFEEKIAANFNPKQPLKPYTPAQPHQHRA 293
+ FV GL D +R DV + P + A+ LA+ FE++ AA P PA+ +
Sbjct: 589 ELFVGGLPDHIRADVAIRDPQDLQSAMYLARAFEQRAAAQTTPP-------PARGFRQSR 641
Query: 294 PFNPTRNDQNQTIEKAPNLPLL--PTPPTRPMSHLQKNPAIKRISPAEMQLRREKGLCYF 351
P P AP PL PT +P +R++PAE Q RR +GLC+
Sbjct: 642 PGLP-----------APPRPLTAPPTAAAQPAGTAAPARPFRRLTPAEQQERRRQGLCFN 690
Query: 352 CDDKFSFSHKCPNKQLMLLELDDDLD--PPDTPSQTAVTSDTETQEVAEHHL---SLNAL 406
CD+ + H CP +L LE DD +D P + + + + E A + SL+AL
Sbjct: 691 CDEPYVRGHVCP--RLFYLENDDYIDDEPQEEGADLQIALEQEPPSRAAAIIPTVSLHAL 748
Query: 407 KGATGMGVIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQH 466
G + I + L+D GS+ +F+ ++ L LP V V NG +
Sbjct: 749 AGVRTPNAMLLPVSINGHRLVALVDSGSTTNFMSVGLMSRLQLPSTPHPTIKVQVANGDN 808
Query: 467 MKAEGVVRKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMD 526
+ +G+ R + L+V ++ L + DVILG +L LGP + D + F
Sbjct: 809 IPCQGMARSVDLRVGTEQFSIDCIGLTLGTFDVILGFEFLRLLGPILWDCDRLSMSFTKG 868
Query: 527 GKFVTLQGESDNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEPEM 586
G+ + G L + P P +P +
Sbjct: 869 GRHIIWSG-------------------------LGAPGAVPPQPAACVVSSTPT--QPLL 901
Query: 587 ATLLHTYREIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLE 646
LL + +F P+GLPP R H I L GA PV V+PYRYP QK+++E+ ML
Sbjct: 902 DDLLRQFELVFAEPQGLPPARPYDHRIHLLPGAAPVAVRPYRYPQLQKDELERQCSAMLA 961
Query: 647 EGIIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQY 706
+GII+PS SPFS+P++LV+K D +WR C DYRALNA T KD FP+P VDELLDELHGA +
Sbjct: 962 QGIIRPSTSPFSAPVLLVRKPDNSWRFCIDYRALNAKTSKDKFPIPVVDELLDELHGAHF 1021
Query: 707 FTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLL 766
FTKLDLRSGYHQ+ + P D +KTAFRTH+GHYE+LVMPFGL++APATFQ LMN + +P L
Sbjct: 1022 FTKLDLRSGYHQVRMHPADVEKTAFRTHEGHYEFLVMPFGLSNAPATFQALMNDVLRPYL 1081
Query: 767 RKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSG 826
RK VLVFFDDIL+YS +W HL+H+ IV L + L+ K SKCSFG V YLGHV+S
Sbjct: 1082 RKYVLVFFDDILIYSKTWAEHLQHISIVLHALRDHQLHLKRSKCSFGARSVAYLGHVISA 1141
Query: 827 SGVAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAFKW 886
+GVAMD KV AV WP P + + LRGFLGL GYYR+FIR + IA PLT LL++DAF W
Sbjct: 1142 AGVAMDAAKVEAVSSWPAPHSARGLRGFLGLAGYYRKFIRDFGVIAAPLTRLLRRDAFTW 1201
Query: 887 DESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMA 946
D+ T AF LK A+TT PVL +P+F + FV++ DASGTG GAVL QG P+A+FS+
Sbjct: 1202 DDDTQAAFQQLKTALTTGPVLQMPNFEKTFVVDCDASGTGFGAVLHQGAGPVAFFSRPFV 1261
Query: 947 SRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHK 1006
+R +AY RE + A+ +R YL G F +RTD SLK LLDQ L T Q WL K
Sbjct: 1262 TRHLKLAAYERELIGLVQAVRHWRPYLWGRHFAVRTDHYSLKYLLDQRLSTVPQHQWLSK 1321
Query: 1007 FIGFDFQIEYKPGKDNQAADALSR---------------VMSLSWSAPEHDFLEQLKKEI 1051
GFDF++EY+PG+ N AADALSR +L+ S P FL+ +++
Sbjct: 1322 LFGFDFEVEYRPGRLNVAADALSRRDAELLQPSAGELGAAAALALSGPSFAFLDDIRRAT 1381
Query: 1052 GNDSHLQTIVQQCVNNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGH 1111
+ QQ + T+ + +++GLL R+ +P +L HQ + H GH
Sbjct: 1382 ATSPDSSRLCQQLQDGTL-TAPWRLEDGLLLHGSRIYVPNHGDLRHQAILLAHS---AGH 1437
Query: 1112 AGVTRTLARVTAQFYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDV 1171
G+ +TL R+ A+FY P R + ++ C TCQ+ K+ AGLLQPL +P QVW D+
Sbjct: 1438 EGIQKTLHRLRAEFYVPGDRTLVADWVRTCTTCQRNKTETLQPAGLLQPLQVPSQVWADI 1497
Query: 1172 TMDFITGLPLSFGFTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSI 1231
+MDFI GLP G +VI+ VVDR SKYAHF+PL Y+ +VA AF + +V+LHG P SI
Sbjct: 1498 SMDFIEGLPKVGGKSVILTVVDRFSKYAHFIPLGHPYTAASVARAFFDGIVRLHGFPSSI 1557
Query: 1232 ISDRDKVFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTW 1291
+SDRD VFT W+ LF+ G +L MST +HPQTDGQSE VNK + MYLRC T P+ W
Sbjct: 1558 VSDRDPVFTGHVWRDLFKCAGVSLRMSTAFHPQTDGQSEVVNKVIAMYLRCVTGDRPRAW 1617
Query: 1292 FKALTWVELWYNTFLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLV 1351
L+W E YNT HT+L +PF+ +YGR PP + Y ++ ++ L DRD +L
Sbjct: 1618 VDWLSWAEYCYNTSFHTALRATPFEVVYGRPPPPILPYQAGSARTAAAEELLRDRDNILA 1677
Query: 1352 ELKENLLRAQQVMKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPF 1411
E+++ L++AQQ+ K D +D+ GD V ++L S+ R KLG RY GPF
Sbjct: 1678 EVRQRLVQAQQLSKRYYDAGHRDMELADGDWVWLRLLHRPVQSLEPRAKGKLGPRYAGPF 1737
Query: 1412 TVIAKVGVVAYKLQLPETARIHPVFHVSQLKIFKGLTTEPYFPLPLTTMEEGPVIQPEVI 1471
V+ ++G VAY+L+LPE AR+H VFHV LK KG E LP PV ++
Sbjct: 1738 RVLERIGKVAYRLELPEGARLHDVFHVGLLKRHKGEPPEQRAGLP-------PVQNGRLL 1790
Query: 1472 LNVRNIIRGD--RKVEQLLVKWKDMQNSEATWEDKQEMLDSYPNLNLEDKI 1520
++R R +LV+W+ + EATWE + YP+ LED++
Sbjct: 1791 PAPLKVLRAQQRRGTWHILVQWQGLSPEEATWEPLDDFRGLYPDFQLEDEL 1841
>ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|15451607|gb|AAK98731.1|
Putative retroelement [Oryza sativa]
Length = 1461
Score = 1027 bits (2655), Expect = 0.0
Identities = 570/1473 (38%), Positives = 837/1473 (56%), Gaps = 80/1473 (5%)
Query: 67 HGNTNSGSSSSVISATVVGSQSTFVGHTQSAVVGKQSTSSMSSQPFQVRHIKLEFPRFNG 126
H + + ++S +A + + +T T S+ G + +H + +FP ++G
Sbjct: 20 HESIKANAASIAANAKAIAALATT---TSSSTSGARPGFGDQPPDRPPKHWRPDFPHYDG 76
Query: 127 KH-VLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRS-RPFQSWNDFTRA 184
K L +I + E +F E++ +AS +L + W+ V R +W F
Sbjct: 77 KSDPLIFINRCESFFLQQRIMQEEKVWMASHNLLEGAQLWYMQVQEDERGTPTWTRFKEL 136
Query: 185 LELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRVYGLSNDALIDCFVSGLKDEL 244
L L +GP + P L ++ +V +Y F AL R L + + F GL L
Sbjct: 137 LNLRYGPPLRSAPLFELSSCRRTGTVEDYQDRFQALLPRAGRLDEEQRVQLFTGGLLPPL 196
Query: 245 RRDVMLHTPISIVKAVSLAKLFEEKIAANFNPKQPLKPYTPAQPHQHRAPFNPTRNDQNQ 304
V + P S+ A+SLA+ FE ++ YT P + Q
Sbjct: 197 SLQVQMQNPQSLAAAMSLARQFEL-----------IEQYTAVPAKAPGRGVLPAPAPRPQ 245
Query: 305 TIEKAPNLPLLPTPPTRPMSHLQKNPAIKRISPAEMQLRREKGLCYFCDDKFSFSHKCPN 364
AP P PP + N ++R++ AE + RR GLC+ CD+K+S H
Sbjct: 246 LALPAPAGAAKPAPPAATAAD---NRPVRRLNQAEQEERRRLGLCFNCDEKYSRGHNKVC 302
Query: 365 KQLMLLELDDDLDPPDTPSQTAVTSDTETQEVAEHHLSLNALKGATGMGVIRFKGYIGPI 424
K+L ++ +D D + A + + + SL+A+ G I + +G
Sbjct: 303 KRLFFVDSVEDED------EEAPEDEVDAEAPV---FSLHAVAGVAVGHPILLRVQLGAT 353
Query: 425 SVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMKAEGVVRKLSLKVQDID 484
++ L+D GS+ +FI L ++ + V NG+ + GV+R + ++ +
Sbjct: 354 TLVALVDTGSTHNFIGESAAARTGLSVQPRPRMTATVANGEKVACPGVLRHAPITIEGMP 413
Query: 485 ITVPAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMDGKFVTLQGE-SDNKPAVS 543
V Y++P+AG D++LG W+A LG D + L F ++G+ + QG + + PAV
Sbjct: 414 FHVDLYVMPLAGYDIVLGTQWMAKLGRMSWDVTTRALTFDLEGRTICWQGAPNQDGPAVR 473
Query: 544 QLNHFRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEPEMATLLHTYREIFQIPKGL 603
A +D+ G LL ++ ++F P GL
Sbjct: 474 A------------------------ASADDSLLG----------GLLDSFADVFTEPTGL 499
Query: 604 PPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQPSLSPFSSPIIL 663
PP R H I+LK+G PV V+PYRYP + K+++E+ M+ +GI++ S S FSSP++L
Sbjct: 500 PPQRGRDHAIVLKQGTSPVAVRPYRYPAAHKDELERQCAAMISQGIVRRSDSAFSSPVLL 559
Query: 664 VKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRSGYHQILLKP 723
VKK D +WR C DYRALNA+T+KD+FP+P VDELLDELHGA++F+KLDLRSGYHQ+ ++P
Sbjct: 560 VKKADSSWRFCVDYRALNALTVKDAFPIPVVDELLDELHGARFFSKLDLRSGYHQVRMRP 619
Query: 724 EDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFDDILVYSPS 783
ED KTAFRTH G YE+LVMPFGL +APATFQ LMN + + LR+ VLVFFDDIL+YS +
Sbjct: 620 EDIHKTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDVLRSFLRRFVLVFFDDILIYSDT 679
Query: 784 WHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIKVIAVLEWP 843
W HL+H+ V +L ++ L+ K SKC+FG+ V YLGHV+S +GVAMD KV A+ EWP
Sbjct: 680 WADHLRHLRAVLTVLREHKLFIKRSKCAFGVDSVAYLGHVISAAGVAMDPAKVQAIREWP 739
Query: 844 TPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAFKWDESTAKAFDTLKQAITT 903
P + + +RGFLGL GYYR+F+ +Y TIA PLT LLKK+ F W E+ AFD LK A+++
Sbjct: 740 QPRSARAVRGFLGLAGYYRKFVHNYGTIAAPLTALLKKEGFAWTEAATAAFDALKAAVSS 799
Query: 904 APVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASRMQLQSAYTREFYAIT 963
AP+L +PDF++ F +E DAS G GAVL Q GHP+A+FS+ +A R + +AY RE +
Sbjct: 800 APILAMPDFTKAFTVECDASSHGFGAVLIQDGHPLAFFSRPVAPRHRALAAYERELIGLV 859
Query: 964 TALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHKFIGFDFQIEYKPGKDNQ 1023
A+ +R YL G F ++TD SLK LLDQ L T Q W+ K +GFDF +EYKPG N
Sbjct: 860 LAVRHWRPYLWGRHFTVKTDHYSLKYLLDQRLSTIPQHHWVGKLLGFDFTVEYKPGAANT 919
Query: 1024 AADALSR------VMSLSWSAPEHDFLEQLKKEIGNDSHLQTIVQQCVNNTMDDINYMVK 1077
ADALSR L SAP DF+E+L++ D L + + + T + +
Sbjct: 920 VADALSRRDTTEDASVLVLSAPRFDFIERLRQAQDVDPALVALQAEIRSGTRAG-PWSMA 978
Query: 1078 EGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTAQFYWPNMRQHIQKF 1137
+G++ + RL +P S L+ ++L+ H+ GH GV RTL R+ F++PNM+ +Q F
Sbjct: 979 DGMVLFAGRLYLPPASPLLQEVLRAVHEE---GHEGVQRTLHRLRRDFHFPNMKSVVQDF 1035
Query: 1138 IEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFGFTVIMVVVDRLSK 1197
+ C CQ+ K+ + AGLL PLP+P+ VW DV +DF+ LP G +VI+ VVDR SK
Sbjct: 1036 VRTCEVCQRYKAEHLQPAGLLLPLPVPQGVWTDVALDFVEALPRVRGKSVILTVVDRFSK 1095
Query: 1198 YAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQHLFQMQGTTLSM 1257
Y HF+PL YS +VA+ F +V+LHG+P+S++SDRD VFTS FW L ++ GT L M
Sbjct: 1096 YCHFIPLAHPYSAESVAQVFFAEIVRLHGVPQSMVSDRDPVFTSAFWSELMRLVGTKLHM 1155
Query: 1258 STTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYNTFLHTSLGMSPFKA 1317
+T +HPQ+DGQSEA N+ + MYLRC T P+ W + L W E +NT TSL +PF+
Sbjct: 1156 TTAFHPQSDGQSEAANRVIIMYLRCLTGDRPRQWLRWLPWAEFVFNTAYQTSLRDTPFRV 1215
Query: 1318 LYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVMKSNADKKRKDVSF 1377
+YGR+PP + Y ++ V + + +R + L +++ L +AQ + K DK + VSF
Sbjct: 1216 VYGRDPPSIRSYEPGDTRVAAVAKSMEERSEFLEDIRYRLEQAQAIQKKYYDKSHRAVSF 1275
Query: 1378 EVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYKLQLPETARIHPVFH 1437
+VGD VL++L+ +S++L + KL RYFGP+ + + VA +L LP AR+H VFH
Sbjct: 1276 QVGDWVLLRLRQRAPASLSLAVSGKLKPRYFGPYRIAEMINEVAARLALPAGARLHDVFH 1335
Query: 1438 VSQLKIFKGLTTEPYFPLPLTTMEEGPV-IQPEVILNVRNIIRGDRKVEQLLVKWKDMQN 1496
+ LK + G P P PL + G V +PE ++ R + RG V Q+LV+WK
Sbjct: 1336 IGLLKKWHG--APPDAPPPLPNVHHGAVACEPERVIKAR-LARG---VRQVLVQWKGTSA 1389
Query: 1497 SEATWEDKQEMLDSYPNLNLEDKIVLEGEGNVM 1529
+ ATWED++ YP L LED++ L+G G+VM
Sbjct: 1390 ASATWEDREPFFARYPALQLEDELPLDGGGDVM 1422
>ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1382
Score = 1025 bits (2650), Expect = 0.0
Identities = 563/1430 (39%), Positives = 815/1430 (56%), Gaps = 99/1430 (6%)
Query: 119 LEFPRFNGK-HVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSRPFQS 177
++FPR++G L ++ + E YF + E++ +AS +LE W+ +
Sbjct: 1 MDFPRYDGTTDPLIFVNRCESYFHQQRIMEEEKVWMASYNLEDVAQLWYIQLQEDEGTPR 60
Query: 178 WNDFTRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRVYGLSNDALIDCFV 237
WN F L L FGP + P L + ++ +V EY F AL R L L+ F
Sbjct: 61 WNRFKDLLHLRFGPPLRSAPLFELAECRRTGTVKEYQNSFQALLPRAGPLQEAQLVQLFT 120
Query: 238 SGLKDELRRDVMLHTPISIVKAVSLAKLFEEKIAANFNPKQPLKPYTPAQPHQHRAPFNP 297
GL L V +H P S+ A+SLA+ E + P+ PA+P AP
Sbjct: 121 GGLLPPLSHAVRIHNPQSLAAAMSLARQVE---LMELDKPAPV----PARP----AP--- 166
Query: 298 TRNDQNQTIEKAPNLPLLPTPP-TRPMSHLQKNPAIKRISPAEMQLRREKGLCYFCDDKF 356
+ P LP PP + P++ ++ P +KR+S E RR GLCY CD+K+
Sbjct: 167 -----RGLLPALPQRLALPAPPASAPVAKMEAKP-VKRLSQEEQAERRRLGLCYNCDEKY 220
Query: 357 SFSHKCPNKQLMLLELDDDLDPPDTPSQTAVTSDTETQEVAEHHLSLNALKGATGMGVIR 416
S H +++ ++ D D A+ +D + + SL A+ G ++
Sbjct: 221 SRGHNRVCRRIFYIDGVTLTDAEDA----ALDADQDGEAPV---FSLQAVAGVPICDTMQ 273
Query: 417 FKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMKAEGVVRKL 476
+ +G ++++ LLD S+ +FI NL I+ + V NG+ ++ GV+R+
Sbjct: 274 VRVMLGAVTLTALLDTSSTHNFIAEEAARRTNLAIQPKPRLTATVANGEKIQCPGVLRQA 333
Query: 477 SLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMDGKFVTLQGES 536
+ + + V +++P+AG D++LG W+ +LGP D++ + F G
Sbjct: 334 PITIDGEEFHVDLFVMPLAGYDLVLGTQWMVTLGPITWDFTARTMSFSRHG--------- 384
Query: 537 DNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEPEMAT-------- 588
+E W + EP +A
Sbjct: 385 ----------------------------------MEVRWSDVAARPEPTVAVIAASEVLL 410
Query: 589 --LLHTYREIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLE 646
LL ++ +F P GLPP R H I+LK GA PV V+PYRY + K+++E ++E
Sbjct: 411 DGLLASFEGVFAEPSGLPPQRARDHSIVLKPGALPVAVRPYRYLAAHKDELELQCAAIIE 470
Query: 647 EGIIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQY 706
+GI++ S S FSSP++LVKK DG+WR C DYRALNA+T+KD+FP+P +DELLDELHGA++
Sbjct: 471 QGIVRRSDSAFSSPVLLVKKPDGSWRFCVDYRALNALTVKDAFPIPVIDELLDELHGARF 530
Query: 707 FTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLL 766
FTKLDLRSGYHQ+ ++P D KTAF TH G YE+LVMPFGL +AP TFQ LMN + +P L
Sbjct: 531 FTKLDLRSGYHQVRMRPADVHKTAFHTHDGLYEFLVMPFGLCNAPVTFQALMNDVLRPFL 590
Query: 767 RKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSG 826
R+ VLVFFDDIL+YS +W HL+H+ V L ++ L+ K +KC+F V YLGHV+S
Sbjct: 591 RRFVLVFFDDILIYSKTWADHLRHIRAVLSELQRHQLFLKRAKCAFASASVAYLGHVISE 650
Query: 827 SGVAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAFKW 886
+GVAMD KV AV +WP P + + +R FLGL GYYR+F+ +Y IA PLT LLKKD+F W
Sbjct: 651 AGVAMDPAKVQAVRDWPAPRSARAVRSFLGLAGYYRKFVHNYGAIAAPLTALLKKDSFSW 710
Query: 887 DESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMA 946
A AFD LK A+TTAPVL +PDFS+PF++E DAS G GAVL Q HP+A+FS+ +A
Sbjct: 711 SGEAATAFDALKAAVTTAPVLAMPDFSKPFIVECDASSHGFGAVLVQDSHPVAFFSRPVA 770
Query: 947 SRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHK 1006
R + +AY RE A+ +R YL G +F+++TD SLK LLDQ L T Q W+ K
Sbjct: 771 PRHRALAAYERELIGFVHAVRHWRPYLWGRRFVVKTDHYSLKYLLDQRLATIPQHHWVGK 830
Query: 1007 FIGFDFQIEYKPGKDNQAADALSRVMS------LSWSAPEHDFLEQLKKEIGNDSHLQTI 1060
+GFDF +EYKPG N ADALSR + L+ SAP DF+++L+ D L +
Sbjct: 831 LLGFDFTVEYKPGHANAVADALSRRDTPEDGTILALSAPRFDFVDRLRHAQTTDPALVAM 890
Query: 1061 VQQCVNNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLAR 1120
++ + + + + +G++ + RL IP S L+ +++ H+ GH GV RTL R
Sbjct: 891 HEELTSGS-QALPWAAVDGMIQYSGRLYIPPASPLLPELMAAVHEE---GHEGVQRTLHR 946
Query: 1121 VTAQFYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLP 1180
+ F++PNM+Q +Q + AC TCQ+ KS + AGLL PLP+P+ VW D+ +DF+ LP
Sbjct: 947 LRRDFHFPNMKQLVQDLVRACPTCQRYKSEHLHPAGLLLPLPVPQGVWTDIALDFVEALP 1006
Query: 1181 LSFGFTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFT 1240
G +VI+ VVDR SKY HF+PL YS TVA+AF +V+LHGMP+SI+SDRD VFT
Sbjct: 1007 RVRGKSVILTVVDRFSKYCHFIPLSHPYSAETVAQAFFADIVRLHGMPQSIVSDRDTVFT 1066
Query: 1241 SKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVEL 1300
S FW+ L + GT L M+T +HPQ+DGQSE+ N+ + MYLRC T P+ W + L W E
Sbjct: 1067 SHFWRELMWLVGTKLHMTTAFHPQSDGQSESANRVIVMYLRCLTGDRPRQWLQWLPWAEY 1126
Query: 1301 WYNTFLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRA 1360
+NT TSL +PF+ +YGR+PP + Y ++ V + + +RDK L +++ L +A
Sbjct: 1127 VFNTAYQTSLRDTPFRVVYGRDPPSIRSYEPGDTRVAAVAKTMEERDKFLADIRSRLEQA 1186
Query: 1361 QQVMKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVV 1420
Q K + DK + V+++VGD L++L+ SS+ KL R++GP+ + + V
Sbjct: 1187 QATQKRHYDKAHRHVTYQVGDWALLRLRQRAASSLPQTVAGKLRPRFYGPYRITELINDV 1246
Query: 1421 AYKLQLPETARIHPVFHVSQLKIFKGLTTEPYFPLPLTTMEEGPVI-QPEVILNVRNIIR 1479
A +L LP AR+H VFH+ LK F G + P P PL + G V+ +PE + R + R
Sbjct: 1247 AVRLALPPRARLHDVFHIGLLKKFHG--SPPDAPPPLPAVHHGAVVPEPERAVKTR-LAR 1303
Query: 1480 GDRKVEQLLVKWKDMQNSEATWEDKQEMLDSYPNLNLEDKIVLEGEGNVM 1529
G V QLL++WK + ATWED + YP+ L D++ L+ G+VM
Sbjct: 1304 G---VRQLLIQWKGESPASATWEDADAFIAKYPDFQLGDELALDEGGDVM 1350
>emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar-group)]
gi|50930431|ref|XP_474743.1| OSJNBa0059D20.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1463
Score = 1020 bits (2637), Expect = 0.0
Identities = 574/1423 (40%), Positives = 813/1423 (56%), Gaps = 77/1423 (5%)
Query: 118 KLEFPRFNGK-HVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSRPFQ 176
K +FPR++G L ++ K E YF ++ T ER+ +AS HL+ W+ +
Sbjct: 59 KWDFPRYDGTTDPLLFLNKFEAYFRHHRTMAEERVGMASYHLDDVTQTWYTQLLEDEGTP 118
Query: 177 SWNDFTRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRVYGLSNDALIDCF 236
+W F + L FGP + P L + ++ +V EY F AL R L + F
Sbjct: 119 TWGRFKELVNLRFGPPLRSAPLFELSECRRTGTVEEYSNRFQALLPRAGRLDESQRVQLF 178
Query: 237 VSGLKDELRRDVMLHTPISIVKAVSLAKLFEEKIAANFNPKQPLKPYTPAQPHQHRAPFN 296
GL L V +H P ++ A+SLA+ E ++ PA P P
Sbjct: 179 TGGLLPPLSHAVRIHHPETLAAAMSLARQVEL-----------MERDRPAPPPLRAPPRG 227
Query: 297 PTRNDQNQTIEKAPNLPL-LPTPPTR-PMSHLQKNPAIKRISPAEMQLRREKGLCYFCDD 354
+ AP L LP PP P NP +R++P EM R +GLC+ C++
Sbjct: 228 LLPAPAPRLALPAPAQQLALPAPPAAAPQGRDAANP--RRLTPEEMAERCRQGLCFNCNE 285
Query: 355 KFSFSHKCPNKQLMLL---ELDDDLDPPDTPSQTAVTSDTETQEVAEHHLSLNALKGATG 411
KF+ H ++L + E+DD D A DTE SL+A+ G
Sbjct: 286 KFTRGHNRFCRRLFFVDGVEIDDVAIEGDA---AAAAGDTEAPV-----FSLHAVAGVPI 337
Query: 412 MGVIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMKAEG 471
I+ + +G S+ LLDGGS+ SFI LPI+ + + +V NG+ + G
Sbjct: 338 ADTIQLQVTVGDASLLALLDGGSTHSFIGEEAARRAGLPIQSSPRMTAIVANGERVACPG 397
Query: 472 VVRKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMDGKFVT 531
V+R + + +++P+AG DV+LG WL +LGP V D++ + F DG+
Sbjct: 398 VIRDAAFTINGSTFHTDLFVMPLAGFDVVLGTRWLGTLGPIVWDFTSRSMAFQRDGQRFA 457
Query: 532 LQGESDNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEPEMATLLH 591
+G A + H R T+ ++++ LL
Sbjct: 458 WKG-----VASTSTTHLR------------TLAAASGTLLDE---------------LLV 485
Query: 592 TYREIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQ 651
Y ++F P GLPP R H I+LK + PV V+PYRYP + K+++E+ M+E+G+++
Sbjct: 486 AYEDVFGEPTGLPPPRGRDHAIVLKPSSAPVAVRPYRYPAAHKDELERQCAAMIEQGVVR 545
Query: 652 PSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLD 711
S SPFSSP++LVKK DG+WR C DYRALNA+T+KD+FP+P V DELHGA++FTKLD
Sbjct: 546 RSDSPFSSPVLLVKKADGSWRFCVDYRALNALTVKDAFPIPVV----DELHGARFFTKLD 601
Query: 712 LRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVL 771
LRSGYHQ+ ++PED KTAFRTH G YE+LVMPFGL +APATFQ LMN + +P LR+ VL
Sbjct: 602 LRSGYHQVRMRPEDVHKTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDVLRPFLRRFVL 661
Query: 772 VFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAM 831
VFFDDIL+YS +W HL+H+ V +L Q+ L+ K SKC+FG V YLGHV+S +GVAM
Sbjct: 662 VFFDDILIYSETWTDHLRHLRTVLSVLRQHRLFVKRSKCTFGSPSVSYLGHVISEAGVAM 721
Query: 832 DKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAFKWDESTA 891
D KV A+ EW P + + +R FLGL GYYR+F+ +Y TIA PLT L KKD F W E TA
Sbjct: 722 DPAKVQAIHEWLVPRSARAVRSFLGLAGYYRKFVHNYGTIAAPLTALTKKDGFSWTEDTA 781
Query: 892 KAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASRMQL 951
AFD LK A+T+APVL +PDF++PF +E DAS G GAVL Q GHP+A+FS+ + R +
Sbjct: 782 AAFDALKAAVTSAPVLAMPDFAKPFTVEGDASTHGFGAVLVQDGHPVAFFSRPVVLRHRA 841
Query: 952 QSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHKFIGFD 1011
+AY RE + A+ +R YL G +F+++TD SLK LLDQ L T Q W+ K +GFD
Sbjct: 842 LAAYERELIGLVHAVRHWRPYLWGRRFVVKTDHYSLKYLLDQRLATIPQHHWVGKLLGFD 901
Query: 1012 FQIEYKPGKDNQAADALSRVMS-----LSWSAPEHDFLEQLKKEIGNDSHLQTIVQQCVN 1066
F +EYKPG N ADALSR + L+ SAP DF+ +L D L + +
Sbjct: 902 FAVEYKPGAANTVADALSRRDTEEGAILALSAPRFDFISKLHDAQRQDPALTALRDEVSA 961
Query: 1067 NTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTAQFY 1126
T + + + LL + L IP S L +I++ H+ GH GV RT+ R+ +F+
Sbjct: 962 GTRTG-PWALVDDLLQYNSWLYIPPASPLAREIIEATHE---DGHEGVKRTMHRLRREFH 1017
Query: 1127 WPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFGFT 1186
PNM+Q +Q ++ +C CQ+ KS + + AGLL PLP+P+ VW D+ +DFI LP G +
Sbjct: 1018 IPNMKQLVQDWVRSCAVCQRYKSEHLSPAGLLLPLPVPQGVWTDIALDFIEALPRVRGKS 1077
Query: 1187 VIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQH 1246
VI+ VVDR SKY HF+PL YS +VA+AF +V LHG+P+S++SDRD +FTS FW+
Sbjct: 1078 VILTVVDRFSKYCHFIPLAHPYSAESVAQAFFAEIVHLHGVPQSMVSDRDPIFTSTFWRE 1137
Query: 1247 LFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYNTFL 1306
L ++ GT L M+T +HPQ+DGQSEA N+ + MYLRC T P+ W + L W E +NT
Sbjct: 1138 LMRLMGTKLHMTTAFHPQSDGQSEAANRVIIMYLRCLTGDRPRQWLRWLPWAEFIFNTAY 1197
Query: 1307 HTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVMKS 1366
+SL +PF+ +YGR+PP + Y ++ V + + +R + L +++ L +AQ V K
Sbjct: 1198 QSSLRDTPFRVVYGRDPPSIRSYEAGDTRVAAVAKSMEERAEFLFDIRYRLEQAQAVQKL 1257
Query: 1367 NADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYKLQL 1426
+ DK + V+++VGD L++L+ +S+ KL R++GP+ + + VA +L+L
Sbjct: 1258 HYDKHHRHVAYQVGDWALLRLRQRPTTSLPQSGTGKLKPRFYGPYRITELINDVAVRLEL 1317
Query: 1427 PETARIHPVFHVSQLKIFKGLTTEPYFPLPLTTMEEGPVIQPEVILNVRNIIRGDRKVEQ 1486
P AR+H VFH+ LK F G P P L + G I PE VR R R V Q
Sbjct: 1318 PAGARLHDVFHIGLLKKFHG--PPPGAPPALPPLHHG-AIAPEPERAVR--FRLARGVRQ 1372
Query: 1487 LLVKWKDMQNSEATWEDKQEMLDSYPNLNLEDKIVLEGEGNVM 1529
LV+WK + ATWED + + YP L LED++ LE G+VM
Sbjct: 1373 ALVQWKGESPASATWEDIEVLRAKYPALQLEDELSLEEGGDVM 1415
>ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
gi|38347666|emb|CAE05600.2| OSJNBa0054D14.1 [Oryza sativa
(japonica cultivar-group)] gi|38346992|emb|CAD40278.2|
OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
Length = 1629
Score = 1013 bits (2618), Expect = 0.0
Identities = 571/1466 (38%), Positives = 826/1466 (55%), Gaps = 61/1466 (4%)
Query: 118 KLEFPRFNGKHVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSRPFQS 177
KL+FP+F+G DW K E YF NT + +A ++ W + F +
Sbjct: 178 KLDFPKFDGTDPQDWRMKCEHYFDVNNTYPGLWVRVAIIYFSGRAASWLRSTKAHVRFPN 237
Query: 178 WNDFTRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRVYGLSNDALIDC-- 235
W DF AL F ++ + ++Q+ +V EYY +F L N++ L D +++
Sbjct: 238 WEDFCAALSDKFDRDQHELLIRQMDGIRQSGTVWEYYEQFDELMNKL--LVYDPVVNMHY 295
Query: 236 ----FVSGLKDELRRDVMLHTPISIVKAVSLAKLFEEKIAANFNPKQPLKPYTPAQPHQH 291
F GL ++R V+L P + A+++A L EE + A
Sbjct: 296 LTHRFTEGLYRKIRNVVLLQRPRDLESALAVALLQEEVLET-------------ADEVTG 342
Query: 292 RAPFNPTRNDQNQTIEKAPNLPLLPTPPTRP-------MSHLQKNPAIKRISPAEMQL-- 342
+ N +++ LPTPP R S +K ++R S +L
Sbjct: 343 KEVKKSEGNSLGRSVANLRGAYPLPTPPMRSGGINMGIKSEEKKESEVRRSSGTNERLSS 402
Query: 343 ----RREKGLCYFCDDKFSFSHKCPNKQLMLLELDDDLDPPDTPSQTAVTSDTETQEVAE 398
RR +GLCY C +K+S +HKC N + L + + + +++ E
Sbjct: 403 LKAQRRAQGLCYICAEKWSPTHKCSNT-VQLHAVQELFTVLHESVEDGLSTTDHVVEQTL 461
Query: 399 HHLSLNALKGATGMGVIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCN 458
+SL A++G G +R G I + IL+D GSS SFI R+ L +E
Sbjct: 462 MAVSLQAVQGTETGGCMRMLGQIQGKEILILVDSGSSASFISKRVASSLMGVLEQPVHVQ 521
Query: 459 VLVGNGQHMKAEGVVRKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSV 518
V+V G + + +Q +L + D+ILG WL P D++
Sbjct: 522 VMVAGGAKLHCCSEILNCEWTIQGHVFFTNLKVLELNNYDMILGMDWLMQHSPMTVDWTT 581
Query: 519 SKLKFYMDGKFVTLQGESDNKPAVSQLN--HFRRLQHMNAISELFTIQKIDPAVIEDNWE 576
L G + L G + + ++ R L A+S L + ++
Sbjct: 582 KSLIIAYAGTQIQLYGVRSDTEQCAHISSKQLRELNDRTAVSNLVQFCSVFALEYQEQ-- 639
Query: 577 GMPVNIEPEMATLLHTYREIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQ 636
I + T+L + +F PKGLPP R+ H I L GA PV V+PYRY QK +
Sbjct: 640 -----IPEVVQTVLTEFSSVFDEPKGLPPIRQFDHTIPLLPGAGPVNVRPYRYTPIQKNE 694
Query: 637 IEKMVQDMLEEGIIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDE 696
IE VQ+ML +GIIQPS SPFSSP++LVKKKDG+WR C DYR LNAIT+K+ +P+P +DE
Sbjct: 695 IESQVQEMLSKGIIQPSSSPFSSPVLLVKKKDGSWRFCVDYRHLNAITVKNKYPLPVIDE 754
Query: 697 LLDELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQR 756
LLDEL GAQ+F+KLDLRSGYHQI + P+D KTAF+TH GH+E+ V+PFGLTSAPATFQ
Sbjct: 755 LLDELAGAQWFSKLDLRSGYHQIRMHPDDEHKTAFQTHHGHFEFRVLPFGLTSAPATFQG 814
Query: 757 LMNQLFQPLLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITE 816
+MN + LLR+CVLVF DDIL+YS S H++H++ VFQIL ++ L K +KCSF E
Sbjct: 815 VMNSVLATLLRRCVLVFVDDILIYSKSLEEHVQHLKTVFQILLKHQLKVKRTKCSFAQQE 874
Query: 817 VEYLGHVVSGSGVAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLT 876
+ YLGH++ +GV+ D K+ + WP PT++K+LR FLGL+GYYR+F+R+Y ++ PLT
Sbjct: 875 LAYLGHIIQPNGVSTDPEKIQVIQHWPAPTSVKELRSFLGLSGYYRKFVRNYGILSKPLT 934
Query: 877 NLLKK-DAFKWDESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGG 935
NLL+K + W T AF LKQA+ TA VL +PDF PFV+ETDAS G+GAVL Q
Sbjct: 935 NLLRKGQLYIWTAETEDAFQALKQALITALVLAMPDFQTPFVVETDASDKGIGAVLMQNN 994
Query: 936 HPIAYFSKKMASRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSL 995
HP+A+ S+ + R S Y +E AI A+ +R YL +F +RTD +SL L +Q L
Sbjct: 995 HPLAFLSRALGLRHPGLSTYEKESLAIMLAVDHWRPYLQHDEFFIRTDHRSLAFLTEQRL 1054
Query: 996 QTPEQQAWLHKFIGFDFQIEYKPGKDNQAADALSR--------VMSLSWSAPE--HDFLE 1045
TP Q L K +G ++I +K G DN AADALSR + +LS + PE +D +
Sbjct: 1055 TTPWQHKALTKLLGLRYKIIFKKGIDNSAADALSRYPGSDRVELSALSVAVPEWINDIVA 1114
Query: 1046 QLKKEIGNDSHLQTIVQQCVNNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHD 1105
+ S +QT+ C+N+ N+ ++ G+LY+++RL + ++ +IL H
Sbjct: 1115 GYSSDPDACSKVQTL---CINSGAVP-NFSLRNGVLYFQNRLWVGHNVDVQQRILANLHT 1170
Query: 1106 TPIGGHAGVTRTLARVTAQFYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPE 1165
+GGH+G+ T RV F WP +R + ++++AC CQQAKS + Y G+LQPLP+P+
Sbjct: 1171 AAVGGHSGIQVTYQRVKQLFAWPRLRATVVQYVQACSVCQQAKSEHVKYPGMLQPLPVPD 1230
Query: 1166 QVWDDVTMDFITGLPLSFGFTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLH 1225
W V++DF+ GLP S F I+VVVD+ SKY+HF+PL +S VAEA++ ++ +LH
Sbjct: 1231 HAWQIVSLDFVEGLPKSASFNCILVVVDKFSKYSHFVPLTHPFSALDVAEAYMQHIHRLH 1290
Query: 1226 GMPKSIISDRDKVFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTF 1285
G+P+S+ISDRD++FTS W LF++ GT L MS++YHPQTDGQ+E VN+CLE +LRCF
Sbjct: 1291 GLPQSLISDRDRIFTSTLWTTLFRLAGTQLRMSSSYHPQTDGQTERVNQCLETFLRCFVH 1350
Query: 1286 KNPKTWFKALTWVELWYNTFLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMD 1345
P W + L E WYNT H++LG +PF+ LYG +P + ++ + L +
Sbjct: 1351 ACPSQWSRWLALAEYWYNTSFHSALGTTPFEVLYGHKPRYFGLSASAACRSDDLVEWLHE 1410
Query: 1346 RDKLLVELKENLLRAQQVMKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGM 1405
R+K+ ++++LLRAQ MK AD+ R + SF VGD V +KLQP+ Q SV R N KL
Sbjct: 1411 REKMQALIRDHLLRAQTRMKQQADQHRSERSFAVGDWVYLKLQPFVQQSVVTRANRKLSF 1470
Query: 1406 RYFGPFTVIAKVGVVAYKLQLPETARIHPVFHVSQLKIFKGLTTEPYFPLPLTTMEEGPV 1465
R++GPF V+ KVG VAY+L LP ++ IHPV HVSQLK T + + PLP+
Sbjct: 1471 RFYGPFQVLDKVGTVAYRLDLPSSSLIHPVVHVSQLKKALAPTEQVHSPLPVLDPTNATH 1530
Query: 1466 IQPEVILNVRNIIRGDRKVEQLLVKWKDMQNSEATWEDKQEMLDSYPNLNLEDKIVLEGE 1525
+ P IL+ R I +G + VEQ+ V+W + TWE+ QE+ +P + +G
Sbjct: 1531 VCPAQILDRRFIRKGSKLVEQIQVRWTGDAPAATTWENPQELRRRFPTAPAWGQAGTQGG 1590
Query: 1526 GNVMSVEGPIDKSGANDDMANKKGLR 1551
GNVM PI + +D+ ++ +R
Sbjct: 1591 GNVM--PAPIASATIHDEAQPRRSMR 1614
>gb|AAL76001.1| putative gag-pol polyprotein [Zea mays]
Length = 2396
Score = 984 bits (2544), Expect = 0.0
Identities = 564/1438 (39%), Positives = 808/1438 (55%), Gaps = 87/1438 (6%)
Query: 118 KLEFPRFNGKHVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSRPFQS 177
++ FP+F+G + W E YF Y+ + +A++H W Q V R S
Sbjct: 174 RVNFPQFDGDNPQLWKTLCENYFDMYDVEPYMWIRVATMHFIGRAASWLQSVGRRVCMLS 233
Query: 178 WNDFTRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRV--YGLSNDALIDC 235
W++F R L+ FG ++ LF + Q+ +V EY +F+ L + + Y + D L
Sbjct: 234 WSEFCRQLQDRFGREQHESLIRQLFHIHQSGTVAEYVEQFSILVDHLSAYEANADPLYYT 293
Query: 236 --FVSGLKDELRRDVMLHTPISIVKAVSLAKLFEEKIAAN-FNPKQPLKPYT-PAQPHQH 291
F+ GL+D+++ +M+ P ++ A SLA + EE A + +P + P Q
Sbjct: 294 MRFIDGLRDDIKAVIMVQRPSNLDTACSLALVQEEATTARRWRRSEPSSSHAGPKTGVQL 353
Query: 292 RAPFNPTRNDQNQTIEKAPNLPLLPTPPTRPMSHLQKNPAIKRISPAEMQLRREKGLCYF 351
A T N + T+ SH K +++R RR KGLC
Sbjct: 354 SASTKWTSNKDS----------------TQSASHSDKLESLRRF-------RRAKGLCDK 390
Query: 352 CDDKFSFSHKCP-NKQLMLLEL-----------DDDLDPPD-TPSQTAVTSDTETQEVAE 398
C +K++ HKC QL +E + DL PP+ P Q VT
Sbjct: 391 CAEKWNPGHKCAATAQLHAMEEVWSLLVDEEVPESDLSPPEPAPEQLFVT---------- 440
Query: 399 HHLSLNALKGATGMGVIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCN 458
+S +A G+TG ++ G I + IL+D GSS +F+ ++ L
Sbjct: 441 --ISKSAWTGSTGRQTLKLNGSIQNHPLLILIDSGSSHTFLNDQLRPHLQGVTSMASTLQ 498
Query: 459 VLVGNGQHMKAEGVVRKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSV 518
V V NG + + + ++Q+ T LP+ D+++G WL S P D++
Sbjct: 499 VQVANGAMVTCHYKLLQAQWQIQNCSFTSDVSFLPLPYYDMVVGMDWLESFSPMRVDWAQ 558
Query: 519 SKLKFYMDGKFVTLQGESDNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDNWEGM 578
L G V LQG + PA + + L M + S + + PA+
Sbjct: 559 KWLIIPYQGSSVLLQGNTAGVPADTVIE----LLFMESASSVSSSPDSHPAI-------- 606
Query: 579 PVNIEPEMATLLHTYREIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIE 638
LL + +F P+GLPP+R+ H I L EGAQPV V+PYRYP + K++IE
Sbjct: 607 --------QALLQQFSSVFAEPQGLPPSRDCDHAIPLVEGAQPVSVRPYRYPPALKDKIE 658
Query: 639 KMVQDMLEEGIIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELL 698
K VQ+ML +G+IQ S S F+SP++LVKKKD TWR C DYR LNA+T+K +P+P D+L+
Sbjct: 659 KQVQEMLHQGVIQKSNSSFASPVLLVKKKDMTWRFCVDYRYLNALTLKSKYPVPVFDQLI 718
Query: 699 DELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLM 758
DEL +++F+KLDLR+GYHQILLKP + KTAF+TH GHYE+ VM FGLT AP TF M
Sbjct: 719 DELAHSKWFSKLDLRAGYHQILLKPGEEYKTAFQTHVGHYEFRVMAFGLTGAPNTFLSAM 778
Query: 759 NQLFQPLLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVE 818
N+ +P+LRKC LVFFDDIL+YS S+ HL H++ V Q+L + KLSKC F T
Sbjct: 779 NETLKPVLRKCALVFFDDILIYSKSFEEHLLHLQKVLQLLLSDNWKVKLSKCEFAKTNTA 838
Query: 819 YLGHVVSGSGVAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNL 878
YLGH++S GV+ K+ A+ W PT+ K+LR FLGL G+YR+F++ + I+ PL +L
Sbjct: 839 YLGHIISEQGVSTYPSKIQAISSWAVPTSAKELRCFLGLAGFYRKFVKHFGIISRPLFDL 898
Query: 879 LKKDA-FKWDESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHP 937
LKK F W +KAF+ LKQA+ TAPVL LPDFSQPF + TDAS GVGAVL Q GHP
Sbjct: 899 LKKHTLFVWTVDHSKAFEVLKQALVTAPVLALPDFSQPFCIHTDASYYGVGAVLMQSGHP 958
Query: 938 IAYFSKKMASRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQT 997
+A+ SK + + Q S Y +E+ AI A+A++R YL +FI+ TD +SL L +Q L T
Sbjct: 959 LAFLSKALGPKNQGLSTYEKEYMAIILAIAQWRSYLQLAEFIIYTDHRSLAQLNEQRLHT 1018
Query: 998 PEQQAWLHKFIGFDFQIEYKPGKDNQAADALSRVM-------SLSWSAPEHDFLEQLKKE 1050
QQ K G ++I Y+ G DN AADALSR + ++S S P +L+++ +
Sbjct: 1019 IWQQKMYTKLAGLQYKIVYRKGVDNGAADALSRKVQEDSHCCAISHSVP--TWLQEVVEG 1076
Query: 1051 IGNDSHLQTIVQQCVNNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGG 1110
D + ++ Q + N+ D + + +G++ K+R+ + L ++L+ HDT +GG
Sbjct: 1077 YDKDPTSKQLLAQLILNSADKAPFSLHQGIIRHKNRIWLGGNLQLQQKVLQAMHDTAVGG 1136
Query: 1111 HAGVTRTLARVTAQFYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDD 1170
H+G T +V FYWP MR + +++++C CQQ+K Y GLLQPL +P Q W
Sbjct: 1137 HSGAPATYHKVKQMFYWPGMRADVLQYVQSCTVCQQSKPDRAKYPGLLQPLEVPPQAWHT 1196
Query: 1171 VTMDFITGLPLSFGFTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKS 1230
+++DFI GLP S + I+VVVD+ SKY HF+PL ++ VA F++ V KLHG+P +
Sbjct: 1197 ISLDFIEGLPRSAHYNCILVVVDKFSKYGHFLPLLHPFTAAKVARVFLDNVYKLHGLPVN 1256
Query: 1231 IISDRDKVFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKT 1290
IISDRD++FTS FWQ LFQ+ GT LSMS++YHPQ+DGQ+E +N+CLE +LRC+ P
Sbjct: 1257 IISDRDRIFTSSFWQQLFQITGTNLSMSSSYHPQSDGQTERLNQCLETFLRCYVHTCPSR 1316
Query: 1291 WFKALTWVELWYNTFLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLL 1350
W L+ E WYNT +H++LG +PF+ LYG P E++ L +R+ +
Sbjct: 1317 WSAWLSVAEYWYNTTVHSTLGRTPFEVLYGHTPRHFGILVDTVVPQPELETWLKERELMT 1376
Query: 1351 VELKENLLRAQQVMKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGP 1410
+K +L RAQ MK ADK+R + F VGD V +KLQPY QSSVA R N+KL ++FGP
Sbjct: 1377 KVIKLHLHRAQDRMKRQADKQRSERVFSVGDWVYLKLQPYIQSSVATRSNHKLSFKFFGP 1436
Query: 1411 FTVIAKVGVVAYKLQLPETARIHPVFHVSQLKIFKGLTTEPYFPLPLTTMEEGPVIQPEV 1470
F + ++G VAY+L LP ++ IHP+FHVSQLK G LP + GP+ P
Sbjct: 1437 FQITDRLGSVAYRLALPASSSIHPIFHVSQLKRVIGRDQRASPQLP---QDVGPIQVPTR 1493
Query: 1471 ILNVRNIIRGDRKVEQLLVKWKDMQNSEATWEDKQEMLDSYPNLNLEDKIVLEGEGNV 1528
IL R I RG + Q+ V W M ATWED + + +P + D+ G+GNV
Sbjct: 1494 ILQRRFIDRGGELIAQVKVVWSGMTEDLATWEDVEALRARFPKALIWDQAGARGQGNV 1551
>gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana]
gi|25403233|pir||G86474 probable protein gypsy/Ty3
element polyprotein [imported] - Arabidopsis thaliana
Length = 1447
Score = 977 bits (2525), Expect = 0.0
Identities = 563/1515 (37%), Positives = 844/1515 (55%), Gaps = 122/1515 (8%)
Query: 12 TELRRQAEAQEKSNVENKARFDRLEAMQTASDLRFNQLSATLERFMQQAPQHNVSHGNTN 71
T+L Q KS +++ A D + AM + R + L+R + ++
Sbjct: 28 TKLEEMVAEQHKSMLKHMA--DMMSAMSRTTAKRVTEGEKVLDRSVPRS----------- 74
Query: 72 SGSSSSVISATVVGSQSTFVGHTQSAVVGKQSTSSMSSQPFQVRHIKLEFPRFNGKHVLD 131
S+SS+ + V Q F + +V ++ + + R K++FPRF+G + +
Sbjct: 75 --STSSMARSGFVEHQRDFQRDFRPEMVRQEVNNQYGNL---TRLGKIDFPRFDGSRINE 129
Query: 132 WIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSR----PFQSWNDFTRALEL 187
W+FK E++FG TP+ ++ + ++H + W +S F +W ++ + L+
Sbjct: 130 WLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIGLDVFFNWPEYVKLLKD 189
Query: 188 DFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRVYGLSNDALIDCFVSGLKDELRRD 247
F + D P A L KLQ+ + EY+ +F + R+ LS + L+ +++GL+ + +
Sbjct: 190 RFEDACDD-PMAELKKLQETDGIVEYHQQFELIKVRL-NLSEEYLVSVYLAGLRTDTQMH 247
Query: 248 VMLHTPISIVKAVSLAKLFEEKIAANFNPKQPLKPYTPAQPHQHRAPFNPTRNDQNQTIE 307
V + P ++ + L K +E +PK+ + + + + P + + ++
Sbjct: 248 VRMFEPKTVRDCLRLGKYYERA-----HPKKTVSSTWSQKGTRSGGSYRPVKEVEQKS-- 300
Query: 308 KAPNLPLLPTPPTRPMSHLQKNPAIKRISPAEMQLRREKGLCYFCDDKFSFSHKCPNKQL 367
HL GLCYFCD+KF+ H +K+
Sbjct: 301 ----------------DHL--------------------GLCYFCDEKFTPEHYLVHKKT 324
Query: 368 MLLELDDDLDPPDTPSQTAVTSDTETQEVAEHHLSLNALKGATGMGVIRFKGYIGPISVS 427
L +D D + D V SD + ++ +S+NA+ G +G + KG + +
Sbjct: 325 QLFRMDVDEEFEDA---VEVLSDDDHEQKPMPQISVNAVSGISGYKTMGVKGTVDKRDLF 381
Query: 428 ILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMKAEGVVRKLSLKVQDIDITV 487
IL+D GS+ +FI + L +E V V +G+ + +G ++ + K+Q
Sbjct: 382 ILIDSGSTHNFIDSTVAAKLGCHVESAGLTKVAVADGRKLNVDGQIKGFTWKLQSTTFQS 441
Query: 488 PAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMDGKFVTLQGESDNKPAVSQLNH 547
L+P+ G D++LG WL +LG ++ +++F+ + V L G + +
Sbjct: 442 DILLIPLQGVDMVLGVQWLETLGRISWEFKKLEMQFFYKNQRVWLHGIITGSVRDIKAHK 501
Query: 548 FRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNI-------EPEMATLLHTYREIFQIP 600
++ Q + ++++ V ++ E ++ E + ++ + ++F P
Sbjct: 502 LQKTQADQIQLAMVCVREV---VSDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFAEP 558
Query: 601 KGLPPNREL-SHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQPSLSPFSS 659
LPP RE H+I L EGA PV +PYRY QK++I+K+VQDM++ G IQ S SPF+S
Sbjct: 559 TDLPPFREKHDHKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSPFAS 618
Query: 660 PIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRSGYHQI 719
P++LVKKKDGTWR C DY LN +T+KD F +P +++L+DEL G+ F+K+DLR+GYHQ+
Sbjct: 619 PVVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQV 678
Query: 720 LLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFDDILV 779
+ P+D QKTAF+TH GH+E+LVM FGLT+APATFQ LMN +F+ LRK VLVFFDDIL+
Sbjct: 679 RMDPDDIQKTAFKTHNGHFEYLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILI 738
Query: 780 YSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIKVIAV 839
YS S H +H+ +VF+++ + L+AK SK E+LGH +S + D K+ AV
Sbjct: 739 YSSSIEEHKEHLRLVFEVMRLHKLFAKGSK--------EHLGHFISAREIETDPAKIQAV 790
Query: 840 LEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAFKWDESTAKAFDTLKQ 899
EWPTPT +KQ+RGFLG GYYRRF+R++ IAGPL L K D F W AFDTLK
Sbjct: 791 KEWPTPTTVKQVRGFLGFAGYYRRFVRNFGVIAGPLHALTKTDGFCWSLEAQSAFDTLKA 850
Query: 900 AITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASRMQLQSAYTREF 959
+ APVL LP F + F++ETDA G G+ AVL Q GHP+AY S+++ + S Y +E
Sbjct: 851 VLCNAPVLALPVFDKQFMVETDACGQGIRAVLMQKGHPLAYISRQLKGKQLHLSIYEKEL 910
Query: 960 YAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHKFIGFDFQIEYKPG 1019
A A+ K+RHYLL FI++TDQ+SLK LL+Q L TP QQ WL K + FD++I+Y+ G
Sbjct: 911 LAFIFAVRKWRHYLLPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQG 970
Query: 1020 KDNQAADALSR-----VMSLSWSAPEHDFLEQLKKEIGNDSHLQTIVQQCVNNTMDDINY 1074
K+N ADALSR V+ ++ S E DFL++++ +D L+ I+ + +Y
Sbjct: 971 KENLVADALSRVEGSEVLHMALSIVECDFLKEIQVAYESDGVLKDIISALQQHPDAKKHY 1030
Query: 1075 MVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTAQFYWPNMRQHI 1134
+ +L K ++V+P + + +++L+ H + +GG +G + RV + FYW M + I
Sbjct: 1031 SWSQDILRRKSKIVVPNDVEITNKLLQWLHCSGMGGRSGRDASHQRVKSLFYWKGMVKDI 1090
Query: 1135 QKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFGFTVIMVVVDR 1194
Q FI +C TCQQ KS N Y GLLQPLPIP+++W DV+MDFI GLP S G +VIMVVVDR
Sbjct: 1091 QAFIRSCGTCQQCKSDNAAYPGLLQPLPIPDKIWCDVSMDFIEGLPNSGGKSVIMVVVDR 1150
Query: 1195 LSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQHLFQMQGTT 1254
LSK AHF+ L YS TVA+AF++ V K HG P SI+SDRD +FTS FW+ F++QG
Sbjct: 1151 LSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPTSIVSDRDVLFTSDFWKEFFKLQGVE 1210
Query: 1255 LSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYNTFLHTSLGMSP 1314
L MS+ YHPQ+DGQ+E VN+CLE YLRC P W K L E WYNT H+S M+P
Sbjct: 1211 LRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPHLWNKWLPLAEYWYNTNYHSSSQMTP 1270
Query: 1315 FKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVMKSNADKKRKD 1374
F+ +YG+ PP+ Y S V + L +R+ +L+ LK +L+RAQ MK AD+ R +
Sbjct: 1271 FELVYGQAPPIHLPYLPGKSKVAVVARSLQERENMLLFLKFHLMRAQHRMKQFADQHRTE 1330
Query: 1375 VSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYKLQLPETARIHP 1434
+F++GD V VKLQPYRQ SV LR N KL +YFGP+ +I K G V
Sbjct: 1331 RTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKIIEKCGEV-------------- 1376
Query: 1435 VFHVSQLKIFKGLTTEPYFPLPLTTMEEGPVIQPEVILNVRNIIRGDRKVEQLLVKWKDM 1494
+ +TT P L + E PE IL + + R R +LVKW
Sbjct: 1377 --------MVGNVTTSTQLPSVLPDIFEK---APEYILERKLVKRQGRAATMVLVKWIGE 1425
Query: 1495 QNSEATWE---DKQE 1506
EATW+ D+Q+
Sbjct: 1426 PVEEATWKFLFDRQQ 1440
>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultivar-group)]
Length = 1586
Score = 969 bits (2505), Expect = 0.0
Identities = 539/1425 (37%), Positives = 802/1425 (55%), Gaps = 73/1425 (5%)
Query: 118 KLEFPRFNGKHVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSRPFQS 177
+LE P F+G+ +DW+ + E+++ TP + + +A HL+ + + W++ + +
Sbjct: 207 RLEIPLFSGEDPIDWLKQCEKFYEISGTPAEQWVNLAIAHLQGKAMKWYRGIGIPWQLIT 266
Query: 178 WNDFTRALELDFGPSIYDCPRA-SLFK--LQQNKSVNEY---YLEFTALSNRVYG-LSND 230
W + + F S D A LF+ Q N++V +Y + E+ L R + L
Sbjct: 267 WPQWCAMVSTRF--SAADTHEAVELFQNVKQYNQTVEQYIDKFEEYVDLVRREHPYLQEQ 324
Query: 231 ALIDCFVSGLKDELRRDVMLHTPISIVKAVSLAKLFEEKIAANFNPKQPLKPYTPAQPHQ 290
L CF+ GL+ +++ DV H P ++++ K +E A +
Sbjct: 325 YLNSCFIGGLRGDIKHDVCGHKPQGLLESYWYTKNYERA----------------ANARK 368
Query: 291 HRAPFNPTRNDQNQTIEKAPNLPLLPTPPTRPMSHLQKNPAIKRISPAEMQLRREKGLCY 350
+ FN R QNQ +Q + R P E ++E+ C+
Sbjct: 369 NLLNFNRNRF-QNQA------------------GPIQGRNVVNRGQPREQVEKKEERKCW 409
Query: 351 FCDDKFSFSHKCPNKQLMLLELDDDLDPPDTPSQTAVTSDTETQEVAEHH---------- 400
FC + + H+C K+ + L + + D + +T + E ++ +
Sbjct: 410 FCKEPWFPKHQCKVKKALNALLMEGEEGKDEGEEGELTGNQEDCKLEKEEAPPDDENQEE 469
Query: 401 ---LSLNALKGATGMGVIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKC 457
+S NA+ G T I L+D GS+ +F+ + P+ TD
Sbjct: 470 LMFVSHNAVYGTTRPDTFSVIIQINGRRAVGLVDSGSTSTFMDQDYAVRNHCPLVSTDAK 529
Query: 458 NVLVGNGQHMKAEGVVRKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYS 517
V+V G +K+E V +L ++Q + ++P+ G DVILGA W+ P D
Sbjct: 530 KVVVAGGGELKSEVQVPELVYQIQGETFSNKFNIIPLKGYDVILGADWIYKYSPITLDLK 589
Query: 518 VSKLKFYMDGKFVTLQGES-DNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDNWE 576
+L K V +Q + K ++ + LF I ++ E+
Sbjct: 590 KRELGITKGEKTVVIQDFTRPGKHLWVDSKKVDQILRKGGLGCLFQITRVKE---EETSH 646
Query: 577 GMPVNIEPEMATLLHTYREIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQ 636
+P +I+ +L + + + PKGLPP R H I LK GA+P ++PYR PH QKE
Sbjct: 647 EIPEDIKE----ILQEFPAVLKDPKGLPPRRNCDHVITLKSGAEPPNLRPYRVPHYQKEA 702
Query: 637 IEKMVQDMLEEGIIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDE 696
+EK++ +++E IQ S P+SSP ++V+KKDG+WR C DYR LNA T+K+ FPMP +++
Sbjct: 703 MEKIIAELIESKEIQVSDIPYSSPAVMVRKKDGSWRLCVDYRQLNAQTVKNKFPMPIIED 762
Query: 697 LLDELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQR 756
LLDEL+GA+ F+KLDLRSGYHQI + +D KTAFRTH GHYE+ VMPFGLT+AP TFQ
Sbjct: 763 LLDELNGAKVFSKLDLRSGYHQIRMATQDIPKTAFRTHLGHYEYQVMPFGLTNAPTTFQS 822
Query: 757 LMNQLFQPLLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITE 816
LMNQ+ P LRK VLVFFDDIL+YS W H +H+ V ++L +N L KL KC+FG+
Sbjct: 823 LMNQVLAPFLRKYVLVFFDDILIYSKDWAEHKEHIRQVMKVLEENKLVVKLKKCAFGLPS 882
Query: 817 VEYLGHVVSGSGVAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLT 876
V YLGH++S GVA D KV + +PTP ++ LR FLG+TGYYRRFI++Y + PL
Sbjct: 883 VTYLGHIISQDGVATDPKKVEKIATYPTPKSVTDLRKFLGMTGYYRRFIKNYGIVCRPLH 942
Query: 877 NLLKKDAFKWDESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGH 936
++LKK+ F+W+ +AF+TLK + T+PVL LPDF++ FV+E DA G G+GAVL Q G
Sbjct: 943 DMLKKEGFQWEREQTEAFETLKTHMCTSPVLSLPDFTKEFVIEADACGNGIGAVLMQSGR 1002
Query: 937 PIAYFSKKMASRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQ 996
P+AYFSK + + QS Y +E AI AL K+RHY+LG + I++TDQ+SLK +++Q L
Sbjct: 1003 PLAYFSKTLGPKAAAQSIYEKEAMAILEALKKWRHYVLGSRLIIKTDQQSLKFMMNQRLV 1062
Query: 997 TPEQQAWLHKFIGFDFQIEYKPGKDNQAADALSRV------MSLSWSAPEHDFLEQLKKE 1050
Q L K + +D+ IEYK GK+N ADALSR+ +++ PE ++ +++
Sbjct: 1063 EGIQHKLLLKLMEYDYSIEYKAGKENLVADALSRIPPAEQCQAITTVIPE--WVRDIQRS 1120
Query: 1051 IGNDSHLQTIVQQCVNNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGG 1110
D I+ D +Y + GLL +K R+ + + + ++++ YH + GG
Sbjct: 1121 YEGDVQAHKILSLIGTEGDTDGSYSQEAGLLRYKGRIYVGENTEIREELIRSYHSSAFGG 1180
Query: 1111 HAGVTRTLARVTAQFYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDD 1170
H+G+ T R+ + FYWP +++ ++ FI C CQ K+ + GLL PL +P+ W
Sbjct: 1181 HSGMRATYHRIKSLFYWPGLKKAVEGFIRECPICQVTKAEHIHIPGLLDPLEVPDMAWAH 1240
Query: 1171 VTMDFITGLPLSFGFTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKS 1230
+TMDF+ GLP S G VI+VVVDRL+KYAHF+ + Y+ V E F+N + +LHGMP +
Sbjct: 1241 ITMDFVEGLPKSNGKDVILVVVDRLTKYAHFIAMAHPYTVEQVVELFMNNIHRLHGMPMA 1300
Query: 1231 IISDRDKVFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKT 1290
II+DRD++FTS+ +Q +F+ L ST+YHPQTDGQ+E VN+CLE YLR TF+ P
Sbjct: 1301 IITDRDRIFTSQLFQEIFKSMKVRLKFSTSYHPQTDGQTERVNQCLESYLRSMTFQEPTR 1360
Query: 1291 WFKALTWVELWYNTFLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLL 1350
W L E WYNT HTS+ M+PF+ALYG PP + +SV + E + + +D ++
Sbjct: 1361 WHSWLALAEWWYNTTYHTSIQMTPFQALYGYPPPQINEFSVPCNVSEEARVTIEQKDAII 1420
Query: 1351 VELKENLLRAQQVMKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGP 1410
+LK +L AQ+ +K AD+ R + + VGD V +KLQPYRQ++ +R + KL +++GP
Sbjct: 1421 QKLKYSLTEAQRRIKHYADRNRSERTLAVGDMVYLKLQPYRQTAFGIRGSLKLRSKFYGP 1480
Query: 1411 FTVIAKVGVVAYKLQLPETARIHPVFHVSQLKIFKGLTTEPYFPLPLTTMEEGPVIQPEV 1470
F ++ KVG VAYKLQLPE + IHPVFHVSQLK G P LP + +P
Sbjct: 1481 FKIMEKVGRVAYKLQLPEGSNIHPVFHVSQLKKHIGSRAVPMANLPSVGPDGQIKTEPVA 1540
Query: 1471 ILNVRNIIRGDRKVEQLLVKWKDMQNSEATWEDKQEMLDSYPNLN 1515
+L R I RG V Q LV W ++ SEATWED + +P+ N
Sbjct: 1541 VLKRRMIPRGGVAVTQWLVLWHNLSPSEATWEDASMIQSMFPSFN 1585
>gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 966 bits (2496), Expect = 0.0
Identities = 566/1535 (36%), Positives = 822/1535 (52%), Gaps = 107/1535 (6%)
Query: 7 LKELTTELRRQAEAQEKSNVENKARFDRLEAMQTASDLRFNQLSATLERFMQQAPQHNVS 66
+K L EL ++ EA+E+ A+ + A Q D A R + Q Q N+
Sbjct: 21 IKGLLLELCKRKEAEEEEEAAATAKASKAVASQGGGDAAGTSSQAQGVRMLDQ--QRNIY 78
Query: 67 HGNTNSGSSSSVISATVVGSQSTFVGHTQSAVVGKQSTSSMSSQPFQVRHIKLEFPRFNG 126
G G+ + ++ + G +LE P F+G
Sbjct: 79 LGQAGEGNQ-----------------YAEAVLKGP----------------RLEIPLFSG 105
Query: 127 KHVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSRPFQSWNDFTRALE 186
+ +DW+ + E++F TP + + +A HL + WF + +W + +
Sbjct: 106 EDPIDWLKQCEKFFEITGTPLDQWVNLAVAHLNGRALKWFGGIGLPWQVIAWPQWCSMVC 165
Query: 187 LDFGPSIYDCPRASLFKLQQNKSVNEYYLE----FTALSNRVYG-LSNDALIDCFVSGLK 241
F + ++Q + E Y++ + L R + L L CF+ GL+
Sbjct: 166 TRFSAASEHEAIELFQNVKQFGTTVEQYIDKFEDYVDLVKRDHPYLQEQYLTSCFIGGLR 225
Query: 242 DELRRDVMLHTPISIVKAVSLAKLFEEKIAANFNPKQPLKPYTPAQPHQHRAPFNPTRND 301
+++ DV P +++ A K+ NFN + P Q N
Sbjct: 226 ADIKYDVCGQKPQGLLETYWAANA--RKMVGNFNRNRNQNPLGGNQGR------NANHRG 277
Query: 302 QNQTIEKAPNLPLLPTPPTRPMSHLQKNPAIKRISPAEMQLRREKGLCYFCDDKFSFSHK 361
QN+ RRE+ C+FC + + H+
Sbjct: 278 QNRGEGD----------------------------------RREEKKCWFCKEPWFPRHQ 303
Query: 362 CPNKQLM--LLELDDDLDPPDTPS-----------QTAVTSDTETQEVAEHHLSLNALKG 408
C KQ + LLE DD + +T + + + TS+ E+ ++S A++G
Sbjct: 304 CKIKQAIHALLEEDDGQEDKETSNTGGDEEEKKETEESATSENESPTEELMYISQTAVQG 363
Query: 409 ATGMGVIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMK 468
+ I + L+D GS+ +F+ P+++TD V+V G +K
Sbjct: 364 TSRPDTFSVLIKINGRTAVGLVDSGSTTTFMDQDYALRNYYPLKNTDTKKVVVAGGGELK 423
Query: 469 AEGVVRKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMDGK 528
+ +V +S ++Q T LLP+ G D+ILGA W+ + P D L K
Sbjct: 424 TDVMVPDISYEIQGECFTNQFKLLPLKGYDIILGADWIYNYSPISLDLKQRILGITKGNK 483
Query: 529 FVTLQGESDNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEPEMAT 588
+ LQ + KP +RL+ M L + +++ V+ + E I +++
Sbjct: 484 VILLQDFT--KPNKHFQISGKRLEKMLKKGALGMVIQVN--VMSETVEEEGHVIPEDISD 539
Query: 589 LLHTYREIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEG 648
++ + + + PKGLPP RE H I L+ GA P ++PYR PH QKE +E ++ +++E
Sbjct: 540 IIQQFPAVLKEPKGLPPKRECDHVINLQSGAVPPNIRPYRVPHYQKEAMENIINELIESK 599
Query: 649 IIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFT 708
IQ S SP+SSP ++V+KKDG+WR C DYR LNA T+K+ FPMP +++LLDEL+GA+ F+
Sbjct: 600 EIQTSDSPYSSPAVMVRKKDGSWRMCVDYRQLNAQTVKNKFPMPIIEDLLDELNGARIFS 659
Query: 709 KLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRK 768
KLDLRSGYHQI + +D KTAFRTH GHYE+ VMPFGLT+ PATFQ LMN + P LR+
Sbjct: 660 KLDLRSGYHQIRMAEKDVHKTAFRTHLGHYEYQVMPFGLTNDPATFQSLMNHVLAPFLRR 719
Query: 769 CVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSG 828
VLVFFDDIL+YS + HL+HV++V Q L N L KL KC+FG+ V YLGHV+S G
Sbjct: 720 FVLVFFDDILIYSKTRAEHLEHVKLVMQALQDNHLVIKLKKCAFGLASVSYLGHVISQDG 779
Query: 829 VAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAFKWDE 888
VA D KV + WPTP ++ +R FLG+TGYYRRFI+ Y TI P+ ++LKK+ F+W
Sbjct: 780 VATDPKKVGKIKNWPTPKDVTDVRKFLGMTGYYRRFIQGYGTICRPIHDMLKKNGFQWGA 839
Query: 889 STAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASR 948
AF+TLK + T+PVL LPDF Q F +E DA G G+GAVL QGG PIA+FSK + +
Sbjct: 840 DQTTAFETLKHKLRTSPVLALPDFDQAFTIEADACGVGIGAVLMQGGRPIAFFSKALGPK 899
Query: 949 MQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHKFI 1008
QS Y +E AI AL K+RHY+LG K I++TDQ+SLK ++ Q L Q L K +
Sbjct: 900 AAGQSIYEKEAMAILEALKKWRHYVLGSKLIIKTDQQSLKFMMGQRLVEGIQHKLLLKLM 959
Query: 1009 GFDFQIEYKPGKDNQAADALSRVMSLSWSAPE--------HDFLEQLKKEIGNDSHLQTI 1060
+D+ IEYK GK+N ADALSR+ A +++ +++ ND I
Sbjct: 960 EYDYTIEYKSGKENLVADALSRLPQKEAVADRCHPMTVVIPEWIVDIQRSYENDVQAHKI 1019
Query: 1061 VQQCVNNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLAR 1120
+ D Y ++ GLL +K R+ + +++ Q++ YH + GGH+G+ T R
Sbjct: 1020 LSLIGTAADPDREYKLEAGLLKYKGRIYVGEATDIRRQLITTYHSSSFGGHSGMRATHHR 1079
Query: 1121 VTAQFYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLP 1180
+ FYW MR +++FI C TCQ KS + GLL PL IP+ W +TMDFI GLP
Sbjct: 1080 IKMLFYWHGMRGEVERFIRECPTCQITKSEHVHIPGLLNPLEIPDMAWTHITMDFIEGLP 1139
Query: 1181 LSFGFTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFT 1240
S G VI+VVVDRL+KYAHF+ L Y V EAF+N + KLHGMP II+DRD++FT
Sbjct: 1140 KSQGKDVILVVVDRLTKYAHFIALAHPYDVEQVVEAFMNNIHKLHGMPMVIITDRDRIFT 1199
Query: 1241 SKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVEL 1300
S +Q +F+ L ST YHPQ DGQ+E VN+CLE YLR TF+ P W+ L E
Sbjct: 1200 SSLFQEIFKAMKVKLRFSTAYHPQMDGQTERVNQCLESYLRNMTFQEPHKWYSWLALAEW 1259
Query: 1301 WYNTFLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRA 1360
WYNT HT++ M+PFKA+YG PP + +SV + E + + +++ +L +LK +L A
Sbjct: 1260 WYNTTFHTAIQMTPFKAMYGYSPPQINEFSVPCNISEEARVTIEEKEAILNKLKNSLADA 1319
Query: 1361 QQVMKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVV 1420
Q MK ADK R + + EVGD V +KL+PYRQS+ +R + KL +++GPF V+ K+G +
Sbjct: 1320 QHRMKYFADKNRTERNLEVGDMVYLKLKPYRQSAFGIRGSLKLRSKFYGPFKVLQKIGQL 1379
Query: 1421 AYKLQLPETARIHPVFHVSQLKIFKGLTTEPYFPLPLTTMEEGPVIQPEVILNVRNIIRG 1480
AYKLQLP+ A+IHPVFHVSQLK G P LP + +P +L R + R
Sbjct: 1380 AYKLQLPDDAQIHPVFHVSQLKKHLGKHAIPMSNLPSVGPDGQIKTEPLAVLQRRMVPRK 1439
Query: 1481 DRKVEQLLVKWKDMQNSEATWEDKQEMLDSYPNLN 1515
V Q L+ W+++ +EATWED + +P+ N
Sbjct: 1440 GVAVTQWLILWQNLSPAEATWEDASVIQAMFPSFN 1474
>gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37536012|ref|NP_922308.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|10140673|gb|AAG13508.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1608
Score = 951 bits (2459), Expect = 0.0
Identities = 569/1486 (38%), Positives = 813/1486 (54%), Gaps = 70/1486 (4%)
Query: 122 PRFNGKHVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSRPFQSWNDF 181
P+FNG + W E YF Y + IA+++ W Q V +W +
Sbjct: 151 PQFNGDNPQLWKSNCEVYFDIYGIHPQNWVKIATLNFCGNAAFWLQSVRSQLAGATWFEL 210
Query: 182 TRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRV--YGLSNDA--LIDCFV 237
+ F + Q SV +Y F ++ +++ YG SND + FV
Sbjct: 211 CDRVCGRFARDRKQALIRQWIHITQTSSVADYVDRFDSIMHQLMAYGGSNDPAYFVTKFV 270
Query: 238 SGLKDELRRDVMLHTPISIVKAVSLAKLFEEK---IAANFNPKQPLKPYTPAQPHQHRAP 294
GLKD +R VM+ P + A ++A L EE + + N K + +P +
Sbjct: 271 DGLKDHIRVVVMVQRPQDLDSACTVALLQEEALEGVQSVSNKKNETTTFLKTKPSHNLT- 329
Query: 295 FNPTRNDQNQTIEKAPNLPLLPTPPTRPMSHLQKNPAIKRISPAEMQLRREKGLCYFCDD 354
+PT +A ++P R + + ++S A RR KGLC+ C +
Sbjct: 330 -SPTF--------QARSIPFTNIEDKRGVEFSKGRD--DKVS-ALRSYRRSKGLCFVCGE 377
Query: 355 KFSFSHKCPNK-QLMLLELDDDLDPPDTPSQTAVTSDTETQEVAEHHLSLNALKGATGMG 413
K+ HKC QL ++E + D E++E + +S AL G
Sbjct: 378 KWGRDHKCATTVQLHVVEELINALKTDPEENCNSEGAPESEEDSLMAISFQALNGTDSSK 437
Query: 414 VIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMKAEGVV 473
IR +G++ + +L+D GS+ SFI ++ L + V V +G + + +
Sbjct: 438 SIRLRGWVQNTELLMLVDSGSTHSFIDAKLGAQLCGLQKLNQAIKVQVADGSQLFCDSFL 497
Query: 474 RKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMDGKFVTLQ 533
S Q T LLP+ D ILG WL P D+ + F G+ V LQ
Sbjct: 498 PNCSWWSQGHSFTSDFRLLPLGSYDAILGMDWLEQFSPMQVDWVHKWIAFQHHGQAVQLQ 557
Query: 534 GESDNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEPEMAT-LLHT 592
G +++ +LQ M+ + + ++ A E + PE+ +L+
Sbjct: 558 GIHPQLSTCFPISN-DQLQGMSKKGAVMCLVHLNVA------ETLTATTVPEIVQPILNE 610
Query: 593 YREIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQP 652
++EIF P LPP R H I L EGA+PV ++PYRY + K++IE+ V +ML G+IQP
Sbjct: 611 FQEIFSEPTELPPKRNCDHHIPLVEGAKPVNLRPYRYKPALKDEIERQVAEMLRSGVIQP 670
Query: 653 SLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLDL 712
S SPFSSP +LVKKKDGTWR C DYR LN +T+K +P+P +DELLDEL G+++F+KLDL
Sbjct: 671 SSSPFSSPALLVKKKDGTWRLCIDYRQLNDVTVKSKYPVPVIDELLDELAGSKWFSKLDL 730
Query: 713 RSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLV 772
R+GYHQI + D KTAF+TH GHYE+ VM FGLT APATF MN+ P+LRK LV
Sbjct: 731 RAGYHQIRMAEGDEYKTAFQTHSGHYEYKVMSFGLTGAPATFLSAMNETLSPVLRKFALV 790
Query: 773 FFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMD 832
FFDDIL+YSP+ HL+HV V Q+LS + KLSKCSF E+ YLGHV+ +GVA D
Sbjct: 791 FFDDILIYSPTLELHLQHVRTVLQLLSAHQWKVKLSKCSFAQQEISYLGHVIGAAGVATD 850
Query: 833 KIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKD-AFKWDESTA 891
K+ V+ WP PT +K+LRGFLGL GYYR+F+R + I+ PLT LLKK FKW
Sbjct: 851 PAKIQDVVSWPQPTTIKKLRGFLGLAGYYRKFVRHFGLISKPLTQLLKKGIPFKWTPEIE 910
Query: 892 KAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASRMQL 951
AF LKQA+ APVL LPDFS+ F +ETDAS G+GAVLSQ HPIAY S+ + + +
Sbjct: 911 SAFQQLKQALVAAPVLALPDFSKHFTIETDASDVGIGAVLSQEKHPIAYLSRALGPKTRG 970
Query: 952 QSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHKFIGFD 1011
S Y +E+ AI A+ +R YL +FI+ TD SL L +Q L TP QQ K +G
Sbjct: 971 LSTYEKEYMAIILAVEHWRPYLQQGEFIILTDHHSLMHLTEQRLHTPWQQKAFTKLLGLQ 1030
Query: 1012 FQIEYKPGKDNQAADALSR-------VMSLSWSAPEHDFLEQLKKEIGNDSHLQTIVQQC 1064
++I Y+ G N AADALSR V ++S P ++++L + D + ++ +
Sbjct: 1031 YKICYRKGVSNAAADALSRRESPISEVAAISECIP--SWMQELMQGYQLDGQSKQLLAEL 1088
Query: 1065 VNNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTAQ 1124
+ +Y + +G+L +K ++ + + L H+++ E H TP+GGH+G T +V +
Sbjct: 1089 AISPNSRKDYQLCQGILKYKGKIWVGNNTALQHKLVNELHATPLGGHSGFPVTYRKVKSL 1148
Query: 1125 FYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFG 1184
F WP M++ I++ +++C C QAK Y GLLQPLP+P W +++DFI GLP S
Sbjct: 1149 FAWPGMKKLIKEQLQSCQVCLQAKPDRARYPGLLQPLPVPAGAWQTISLDFIEGLPRSSH 1208
Query: 1185 FTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFW 1244
+ I+VVVD+ SKY+HF+PL ++ VA+ F+ + KLHG+P++IISDRDK+FTS+FW
Sbjct: 1209 YNCILVVVDKFSKYSHFIPLSHPFNAGGVAQEFMKNIYKLHGLPRAIISDRDKIFTSQFW 1268
Query: 1245 QHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYNT 1304
LF GT L MS+ YHPQ+DGQ+E VN+CLE+YLRCF P W L E WYNT
Sbjct: 1269 DQLFSKFGTDLHMSSAYHPQSDGQTERVNQCLEIYLRCFVHAAPHKWSSWLYLAEFWYNT 1328
Query: 1305 FLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVM 1364
H++L +PF+ LYG P +++ ++ + +R + L+++L RAQQ M
Sbjct: 1329 SFHSTLNKTPFEVLYGYTPSHF-GIGLDDCQIADLHEWHTERKFMQQLLQQHLNRAQQQM 1387
Query: 1365 KSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYKL 1424
K ADKKR F VGD V +KLQPY Q+ VA R +KL RY+GPF V+++VG VAY +
Sbjct: 1388 KHQADKKRSFRQFAVGDWVYLKLQPYVQTFVAQRACHKLAFRYYGPFQVMSRVGTVAYHI 1447
Query: 1425 QLPETARIHPVFHVSQLKIFKGLTTEPYFPLPLTTMEEGPVIQPEVILNVRNIIRGDRKV 1484
QLP T+ IHPVFHVSQLK G + + LP + G + P L+ R + +G+R V
Sbjct: 1448 QLPATSSIHPVFHVSQLKAAVGFSKKVQDELPTSL---GALQVPFQFLDKRLVKKGNRSV 1504
Query: 1485 EQLLVKWKDMQNSEATWEDKQEMLDSYP------NLNLED-KIVLEGEGNVMSVEGPIDK 1537
QLL W SE+TWED +++ +P + +D IV + + ++ G DK
Sbjct: 1505 LQLLTHWYHSSPSESTWEDMEDLFARFPRALAWGQASFQDWGIVRPSQPSGITTSGRSDK 1564
Query: 1538 SGA------NDDMANKKG------------LRRSYRIKGSHPMWSQ 1565
S DD + G R S R+ G PMW++
Sbjct: 1565 SAVALGVDKEDDELQQGGESGKDLGRGLRAKRPSVRVNG--PMWAK 1608
>gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana]
Length = 1397
Score = 950 bits (2456), Expect = 0.0
Identities = 546/1426 (38%), Positives = 793/1426 (55%), Gaps = 184/1426 (12%)
Query: 119 LEFPRFNGKHVLDWIFKAEQYF--GYYNTPDAERLIIASVHLEQEVVPWFQMVNRSRPFQ 176
+E P F+G + WI + E++F G YN +AE+L + SV + E + W+ F
Sbjct: 130 VEMPMFDGSGIYGWIARVERFFRSGGYN--EAEQLALVSVSVSGEALSWYNWAISRGDFV 187
Query: 177 SWNDFTRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRVYGLSNDALIDCF 236
SW L L FG P SLF ++Q SV EY F LS++V GL + L F
Sbjct: 188 SWLKLKSGLMLRFGNLKLRGPSQSLFCIKQTGSVAEYVQRFEDLSSQVGGLDDQKLEGIF 247
Query: 237 VSGLKDELRRDVMLHTPISIVKAVSLAKLFEEKIAANFNPKQPLKPYTPAQPHQHRAPFN 296
++GL E++ V H H
Sbjct: 248 LNGLTGEMQELV----------------------------------------HMH----- 262
Query: 297 PTRNDQNQTIEKAPNLPLLPTPPTRPMSHLQKNPAIKRISPAEMQLRREKGLCYFCDDKF 356
K NLP + + + + K + ++ +R KG+C+ CD +
Sbjct: 263 -----------KPQNLPEMVAVARSMETSVMRRVVQKELQLVKLDEKRRKGICFRCDGPW 311
Query: 357 SFSHKCPNKQLMLLELDDDLDPPDTPSQTAVTSDTETQEVAEHHLSLNALKGATGMGVIR 416
S HKCPNK+L +L + + + + +V + LS ++ G I+
Sbjct: 312 SKEHKCPNKELRVLTVINGFEM-EVLESNSVEEEFHDSVAQFAELSFSSYMGLPSYTTIK 370
Query: 417 FKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMKAEGVVRKL 476
KG SI F P ++ +G G ++ G+ K+
Sbjct: 371 MKG-------SICKGEWCHTQFYFPNF--------------HIRLGTGITVQGLGLCDKV 409
Query: 477 SLKV-----QDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMDGKFVT 531
++ + Q++++T L + DVILG WL +LG ++ +L F G+ VT
Sbjct: 410 TMTLPVGCGQELELTTHFITLDLGPVDVILGIAWLRTLGDCKVNWERHELSFLYHGRTVT 469
Query: 532 LQGESDNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEPEMATLLH 591
L+G+ + L+ F+ + + S F +Q E+ L+
Sbjct: 470 LRGDPE-------LDTFK--MSLKSFSTKFRLQN------------------KELEVSLN 502
Query: 592 TYREIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQ 651
+++ + KGLPP + H I L G + + V+PYRYPH+ KE +E +V +ML+ GII+
Sbjct: 503 SHQNL----KGLPPIKGNEHAISLLPGTRAISVRPYRYPHAHKEAMEGLVSEMLDNGIIR 558
Query: 652 PSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLD 711
S SPFSSP++LVKKKD +WR C DYRALN TI + FP+P +D+LLDELHGA F+KLD
Sbjct: 559 ASKSPFSSPVLLVKKKDQSWRFCVDYRALNRATIPNKFPIPMIDQLLDELHGAIIFSKLD 618
Query: 712 LRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVL 771
LR+GYHQI +K ED +KT FRTH GH+E+LVMPFGL++APATFQ MN + +P LRK VL
Sbjct: 619 LRAGYHQIRMKVEDIEKTTFRTHDGHFEFLVMPFGLSNAPATFQSSMNDMLRPFLRKFVL 678
Query: 772 VFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAM 831
VFFDDIL+YS + H +H+ +V ++L ++ YA K + IT+ GV+
Sbjct: 679 VFFDDILIYSRNEQEHEEHLAMVLKVLEEHQFYANRKK-PYHITQ-----------GVST 726
Query: 832 DKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAFKWDESTA 891
D K +A+ +W TP ++K+LRGFLGLTGYYRRF++ Y T+A PLT LLKKD+F W ES
Sbjct: 727 DPTKTVAMTKWVTPQSVKELRGFLGLTGYYRRFLKGYGTLARPLTELLKKDSFVWSESAQ 786
Query: 892 KAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASRMQL 951
+AFD LK+A++TAPVL LPDF + L S+ QL
Sbjct: 787 EAFDALKRAMSTAPVLALPDFGKVHGL---------------------------TSKEQL 819
Query: 952 QSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHKFIGFD 1011
+ Y RE AI ++ K++HYL+G +F+L TDQKSLK L +Q + + Q WL K + ++
Sbjct: 820 KPVYERELMAIVLSIQKWKHYLMGRRFVLHTDQKSLKFLQEQREVSMDYQKWLTKLLHYE 879
Query: 1012 FQIEYKPGKDNQAADALSRVMS----------LSWSAPEHDFLEQLKKEIGNDSHLQTIV 1061
F I YK G DN+AAD LSR++ ++++ P L L +EI +++HLQ +V
Sbjct: 880 FDILYKLGVDNKAADGLSRMVQPTGSFSSMLLMAFTVPTVLQLHDLYEEIDSNAHLQHLV 939
Query: 1062 QQCVNNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLARV 1121
++C++ Y VKEG L+ K RL+IP +S + IL EYH +GGH+GV +T+ R+
Sbjct: 940 KECLSAKQGTSAYTVKEGRLWKKQRLIIPKDSKFLPLILAEYHSGLLGGHSGVLKTMKRI 999
Query: 1122 TAQFYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPL 1181
F+W M + IQKF+ C CQ+ K + AGLLQPLPIP QVW+D+++DF+ GLP
Sbjct: 1000 QQSFHWEGMMKDIQKFVAKCEMCQRQKYSTLSPAGLLQPLPIPTQVWEDISLDFVEGLP- 1058
Query: 1182 SFGFTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTS 1241
DRLSKY HF+ LK ++ VA F++ VVKLHG P SI+SDRD F S
Sbjct: 1059 -----------DRLSKYGHFIGLKHPFNAVDVARIFIHEVVKLHGFPASIVSDRDNTFLS 1107
Query: 1242 KFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVELW 1301
FW+ F++ GT L ST +HPQTDGQ+E +N+ LE YLRCF +PKTWF+ L ELW
Sbjct: 1108 SFWKDCFKLSGTKLKYSTAFHPQTDGQTEVLNRTLETYLRCFASAHPKTWFQYLPRAELW 1167
Query: 1302 YNTFLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQ 1361
YN+ HT++ +PFK LYGR+PP + R+ N++ E++ L RD +L ++KE+L+ AQ
Sbjct: 1168 YNSSFHTTIKTTPFKVLYGRDPPPIMRFEANSTKNCELEGLLKQRDLMLADIKEHLVNAQ 1227
Query: 1362 QVMKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVA 1421
Q+MK+N DK R++V F+ ++V +KL+PYRQ+SV R KL +YFGPF ++ ++G VA
Sbjct: 1228 QLMKNNDDKHRREVEFDTRNRVFLKLRPYRQNSVTKRVCQKLAAKYFGPFEIMERIGKVA 1287
Query: 1422 YKLQLPETARIHPVFHVSQLKIFKGLTTEPYFPLP-LTTMEEGPVIQPEVILNVRNIIRG 1480
Y+L+LPE ++IH VFHVSQLK G PLP + T + V+ PE +L R
Sbjct: 1288 YRLKLPEGSKIHLVFHVSQLKQVLG-DHHQVIPLPEVLTADNEFVVVPEAVLETR---YN 1343
Query: 1481 DRKVEQLLVKWKDMQNSEATWEDKQEMLDSYPNLNLEDKIVLEGEG 1526
+ + + LV W+ + E TWE +++ +P L L+DK+ +EG G
Sbjct: 1344 EDGLLEALVHWQGLPVHEDTWEIAKDLKKQFPGLALQDKLHVEGGG 1389
>gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534400|ref|NP_921502.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1611
Score = 946 bits (2445), Expect = 0.0
Identities = 535/1425 (37%), Positives = 799/1425 (55%), Gaps = 76/1425 (5%)
Query: 118 KLEFPRFNGKHVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSRPFQS 177
+LE F G+ +DW+ + E++F TP + + +A HL WF+ V +
Sbjct: 231 RLEISLFTGEDPVDWLKQCEKFFEITGTPVDQWVNLAVAHLYGRAAKWFRGVGLPWQVIT 290
Query: 178 WNDFTRALELDFGPS-IYDCPRASLFKLQQNKSVNEY---YLEFTALSNRVYG-LSNDAL 232
W + + F + ++ Q +V +Y + E+ L R + L
Sbjct: 291 WPQWCAMVCTRFSTANTHEAVELFQNVKQYGMTVEQYIDKFEEYMDLVRRDHPYLQEPYF 350
Query: 233 IDCFVSGLKDELRRDVMLHTPISIVKAVSLAKLFEE-----KIAANFNPKQPLKPYTPAQ 287
CF+SGL+ +++ DV P ++++ AK +E+ K AANFN
Sbjct: 351 TSCFISGLRGDIKHDVCGQKPQGLLESYWYAKNYEKAANSRKAAANFNR----------- 399
Query: 288 PHQHRAPFNPTRNDQNQTIEKAPNLPLLPTPPTRPMSHLQKNPAIKRISPAEMQLRREKG 347
++ + N +N N+ P + ++E+
Sbjct: 400 -NRLQTGGNTGKNVYNKG------------------------------QPRQEGDKKEEK 428
Query: 348 LCYFCDDKFSFSHKCPNKQL---MLLELDDDLD-PPDTPSQTAVTSDTETQEVAEH---- 399
C+FC + + H+C KQ +L+E ++ ++ D+ + + + + +++ E
Sbjct: 429 KCWFCKEPWFPRHQCKVKQAIHALLVENEESVEVEEDSVEEEEIKGEKQGEKLPEQTENV 488
Query: 400 -----HLSLNALKGATGMGVIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHT 454
+S +A+ G T + L+D GS+ +F+ + +E+T
Sbjct: 489 QEELMSISQSAVYGLTRPDTFSVMIKVNGKKAVGLVDSGSTTTFMDSKFAIKSQCTLENT 548
Query: 455 DKCNVLVGNGQHMKAEGVVRKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVA 514
V+V G +K+E +V + ++Q T LL + D+ILGA W+ P
Sbjct: 549 KMRKVIVAGGGELKSELIVPGMEYEIQGESFTNSFNLLSLERYDIILGADWIFKYSPITL 608
Query: 515 DYSVSKLKFYMDGKFVTLQGESDNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDN 574
D ++K G+ + +Q + KP +++ M L + +I+ + N
Sbjct: 609 DLRKREMKITKGGRELEIQDFT--KPGKYFQVSNKKMGKMIKKGALGCVIQINAITDQSN 666
Query: 575 WEGMPVNIEPEMATLLHTYREIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQK 634
E V I ++ +L ++ ++ + PKGLPP R H I LK G++P ++PYR PH QK
Sbjct: 667 VE---VGIPKDIQIVLQSFPKVLKEPKGLPPRRSCDHVINLKVGSEPPNLRPYRVPHFQK 723
Query: 635 EQIEKMVQDMLEEGIIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTV 694
+E ++ ++ I+ S SP+ SP ++V+KKDG+WR C DYR LNA TIK+ FPMP +
Sbjct: 724 GAMEDIITELFRTQEIRISDSPYVSPAVMVRKKDGSWRLCVDYRQLNAQTIKNKFPMPII 783
Query: 695 DELLDELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATF 754
++LLDELHGA+ F+KLDLRSGYHQI + D KTAFRTH GHYE+ VMPFGLT+APATF
Sbjct: 784 EDLLDELHGAKVFSKLDLRSGYHQIRMAEGDIPKTAFRTHLGHYEYNVMPFGLTNAPATF 843
Query: 755 QRLMNQLFQPLLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGI 814
Q LMNQ+ P LRK VLVFF DIL+YS + HL+H+++V Q LS N L +L KC FG+
Sbjct: 844 QALMNQVLAPFLRKFVLVFFADILIYSKTQSEHLEHIKLVMQALSANQLVVRLKKCEFGL 903
Query: 815 TEVEYLGHVVSGSGVAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGP 874
V YLGH++S GV+ D K+ + P N+ ++R FLG+ GYYRRFI+ Y I P
Sbjct: 904 DRVSYLGHIISSEGVSTDPKKISDIKNRKPPKNVTEVREFLGMAGYYRRFIKGYGVICRP 963
Query: 875 LTNLLKKDAFKWDESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQG 934
L +LLKKD FKW ++ +AF+ LK+ + +PVL LPDFSQPFV+ETDA G G+GAVL Q
Sbjct: 964 LHDLLKKDGFKWGDTQQEAFELLKEKMCNSPVLALPDFSQPFVIETDACGIGIGAVLMQK 1023
Query: 935 GHPIAYFSKKMASRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQS 994
G P+AYFSK + + QS Y +E AI AL K+RHY+LG I++TDQ+SLK ++ Q
Sbjct: 1024 GRPLAYFSKALGPKAAAQSVYEKEAIAILEALKKWRHYILGGSLIIKTDQQSLKFMMSQR 1083
Query: 995 LQTPEQQAWLHKFIGFDFQIEYKPGKDNQAADALSRVMSLS------WSAPEHDFLEQLK 1048
L Q L K + FD+ IEYK GK+N ADALSR +L + ++++ +K
Sbjct: 1084 LVEGIQHKLLLKLMEFDYVIEYKSGKENLVADALSRSPNLKEEQCLPITVVVPEWVQDIK 1143
Query: 1049 KEIGNDSHLQTIVQQCVNNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPI 1108
+ D I+ + + +Y ++ GLL +K R+ + + + +L+ YH +
Sbjct: 1144 RSYEEDIFAHKILSLIETDGDPERHYKLESGLLKYKGRIYVGETTEIRMLLLEAYHASYF 1203
Query: 1109 GGHAGVTRTLARVTAQFYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVW 1168
GGH+G+ T R+ FYWP +++ ++ +I C TCQ K+ + GLL PL +P+ W
Sbjct: 1204 GGHSGIRATYHRIKQLFYWPGLKKQVEHYIRECPTCQITKAEHIHIPGLLNPLEVPDMAW 1263
Query: 1169 DDVTMDFITGLPLSFGFTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMP 1228
+TMDFI GLP S G VI+VVVDRL+KYAHF+ L Y+ V + F++ + KLHGMP
Sbjct: 1264 THITMDFIEGLPKSQGKDVILVVVDRLTKYAHFLALSHPYTVEQVVQIFMDNIHKLHGMP 1323
Query: 1229 KSIISDRDKVFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNP 1288
I++DRD+VFTS F+Q +F+ Q L ST +HPQTDGQ+E VN+CLE YLR TF+ P
Sbjct: 1324 MVIVTDRDRVFTSNFFQEIFKTQKVKLRFSTAHHPQTDGQTERVNQCLESYLRSMTFQEP 1383
Query: 1289 KTWFKALTWVELWYNTFLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDK 1348
+ WF L E WYNT HTS+ M+PF+ALYG PP +T +++ + E + L D+
Sbjct: 1384 QKWFSWLALAEWWYNTTYHTSIQMTPFQALYGYPPPQITEFAIPCNMSEEARVTLEDKAL 1443
Query: 1349 LLVELKENLLRAQQVMKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYF 1408
+L +LK ++ AQ+ +K ADK R + + E+GD V +KLQPYRQ ++ +R + KL +Y+
Sbjct: 1444 ILQKLKSSIGEAQRRIKFYADKGRSERTLELGDMVYLKLQPYRQVAMGIRGSLKLRSKYY 1503
Query: 1409 GPFTVIAKVGVVAYKLQLPETARIHPVFHVSQLKIFKGLTTEPYFPLPLTTMEEGPVIQP 1468
GPF VI K+G VAYKLQLP+ A IHPVFHVSQLK G P LP + +P
Sbjct: 1504 GPFKVIEKMGAVAYKLQLPDGAGIHPVFHVSQLKKHLGARAIPMPNLPAIGPDGQIKTEP 1563
Query: 1469 EVILNVRNIIRGDRKVEQLLVKWKDMQNSEATWEDKQEMLDSYPN 1513
+L R I R + V Q L+ W+++ +EATWED + ++PN
Sbjct: 1564 AAVLQRRMIPRHNEPVTQWLILWENLTPAEATWEDASYIQAAFPN 1608
>gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532304|ref|NP_920454.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|20270059|gb|AAM18147.1| Putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|18958673|gb|AAL82656.1| retrotransposon protein,
putative, unclassified [Oryza sativa (japonica
cultivar-group)]
Length = 1338
Score = 870 bits (2249), Expect = 0.0
Identities = 490/1168 (41%), Positives = 674/1168 (56%), Gaps = 84/1168 (7%)
Query: 370 LELDDDLDPPDTPSQTAVTSDTETQEVAEHHLSLNALKGATGMGVIRFKGYIGPISVSIL 429
L D L DT + +A + A +SL+A G + ++G + L
Sbjct: 220 LSEDQQLGEDDTDNDSATD---QADAAATLRISLHAATGVRASDAMHITAHLGDTDLYTL 276
Query: 430 LDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMKAEGVVRKLSLKVQDIDITVPA 489
+D G +F+ + + NV V NG + GV + L++ +
Sbjct: 277 IDSGLMHTFLSQDTAARVGRAPQPRMGLNVTVANGDKVACPGVFPDMPLQIAGEEFATDV 336
Query: 490 YLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMDGKFVTLQGESDNKPAVSQLNHFR 549
Y D++V + F+ VTL G +
Sbjct: 337 Y------------------------DFTVLTMSFWHR---VTLHGLPGH----------- 358
Query: 550 RLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEPEMATLLHTYREIFQIPKGLPPNREL 609
Q A++ PA + D+ LL + ++F P GLPP R+
Sbjct: 359 --QRPRALA-------CAPAALLDS--------------LLEEFADVFTEPTGLPPARDR 395
Query: 610 SHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQPSLSPFSSPIILVKKKDG 669
SH I L G PV V+PYRYP K+++E+ + M E G+I S S FSSP++LVKK DG
Sbjct: 396 SHRIQLLPGTAPVAVRPYRYPVRHKDELERQCRVMEENGLIHRSTSAFSSPVLLVKKADG 455
Query: 670 TWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRSGYHQILLKPEDRQKT 729
+WR C +YRALN T+KD +P+P VDELLDELHGA F+KLDLRSGYHQ+ + P+D KT
Sbjct: 456 SWRFCVNYRALNERTVKDKYPIPVVDELLDELHGAAIFSKLDLRSGYHQVRMHPDDIDKT 515
Query: 730 AFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFDDILVYSPSWHSHLK 789
AFRTH G YE+LV+PFGLT+A ATFQ LMN + +P LR+ VLVFFDDILVYSP+W SHL+
Sbjct: 516 AFRTHDGLYEFLVIPFGLTNALATFQSLMNDVLRPFLRRFVLVFFDDILVYSPTWTSHLQ 575
Query: 790 HVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIKVIAVLEWPTPTNLK 849
H+ VF L L+ K +KCSFG V YLGH++S G AMD K+ AV EWP P + K
Sbjct: 576 HLRTVFTALWAAQLFVKHTKCSFGDPSVAYLGHIISQHGFAMDAAKIQAVAEWPRPRSPK 635
Query: 850 QLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAFKWDESTAKAFDTLKQAITTAPVLVL 909
+LRGFLGL YYR+FI+ + ++A PLT LL+KD+F W +T AF LK A+TT PVL L
Sbjct: 636 ELRGFLGLASYYRKFIQDFGSVAAPLTQLLRKDSFAWAPATDDAFQRLKLALTTTPVLSL 695
Query: 910 PDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASRMQLQSAYTREFYAITTALAKF 969
PDF++PFV+E DASGTG GAVL QG PIAYFS+ +A+R +AY RE ++ A+ +
Sbjct: 696 PDFNRPFVVECDASGTGFGAVLHQGEDPIAYFSRPIATRHHALAAYERELISLVQAVRHW 755
Query: 970 RHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHKFIGFDFQIEYKPGKDNQAADALS 1029
R YL G +FI++TD SLK LLDQ L T Q W+ K +GFDF +EYKPGK N AADALS
Sbjct: 756 RPYLWGRQFIVKTDHYSLKFLLDQRLSTIPQHHWVSKLLGFDFVVEYKPGKQNAAADALS 815
Query: 1030 -----RVMSLSWSAPEHDFLEQLKKEIGNDSHLQTIVQQCVNNTMDDINYMVKEGLLYWK 1084
+ S P D L+ ++ D LQ + + +N+ + V +GL+ +K
Sbjct: 816 CRAAPDSQAFVLSTPTFDLLKDIRTAGDTDPALQALRDE-INSGTRTTPWAVIDGLVTYK 874
Query: 1085 HRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTAQFYWPNMRQHIQKFIEACVTC 1144
R+ IP S + ++ HD GH G+ +TL R+ F+ P+ R+ + I+ C+TC
Sbjct: 875 RRIYIPPGSPWVSVVVAAAHD---DGHEGIQKTLHRLRRDFHTPDDRRVVHDHIQGCLTC 931
Query: 1145 QQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFGFTVIMVVVDRLSKYAHFMPL 1204
Q+ K+ + AGLL PLP+P +W DV MDF+ GLP G +VI+ VVDR SKYAH + L
Sbjct: 932 QRNKTDHLHPAGLLLPLPVPSAIWSDVAMDFVEGLPRVGGKSVILTVVDRFSKYAHLIAL 991
Query: 1205 KADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQHLFQMQGTTLSMSTTYHPQ 1264
Y+ TVA AF +V+LHG+P+SI+SDRD VFTS FW LF T L ST +HPQ
Sbjct: 992 AHSYTAETVARAFFVDIVRLHGVPESIVSDRDPVFTSAFWTALFTATCTKLHRSTAFHPQ 1051
Query: 1265 TDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYNTFLHTSLGMSPFKALYGREPP 1324
+DGQS+AVNK + M LRC T + W + L W E YNT H +L +PFK +YGR+PP
Sbjct: 1052 SDGQSKAVNKAIAMCLRCMTGDRSRQWLRWLPWAEYIYNTSFHAALRDTPFKLVYGRDPP 1111
Query: 1325 MLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVMKSNADKKRKDVSFEVGDQVL 1384
+ Y + V Q + +RD L +++ L +AQQ K D+K ++VSFEVG V
Sbjct: 1112 SIRAYDASELRVAAVAQSIEERDAFLADVRLRLEQAQQYAKRYYDQKHREVSFEVGAWVW 1171
Query: 1385 VKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYKLQLPETARIHPVFHVSQLKIF 1444
++++ +S+ KL R++GP+ V+A + VAY+L LP R+H VFHV LK F
Sbjct: 1172 LRVRHRVPASLPEAVKGKLRPRFYGPYRVVAVINEVAYRLALPPGTRLHDVFHVGLLKPF 1231
Query: 1445 KGLTTEPYFPLPLTTMEEG---PVIQPEVILNVRNIIRGDRKVEQLLVKWKDMQNSEATW 1501
G++ P PL L ++ G PV P +L R + RG V QLLV+W+ + S +W
Sbjct: 1232 VGVS--PSAPLALPPIQHGAAQPV--PRQVLRAR-LARG---VRQLLVQWEGLPASATSW 1283
Query: 1502 EDKQEMLDSYPNLNLEDKIVLEGEGNVM 1529
ED + + YP+ L D++++EG +VM
Sbjct: 1284 EDLDDFRNRYPSFQLADELLIEGGRDVM 1311
Score = 71.6 bits (174), Expect = 2e-10
Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 28/229 (12%)
Query: 6 RLKELT---TELRRQAEAQEKSNVENKARFDRLEAMQTASDLRFNQLSATLERFMQQAPQ 62
RL+EL+ T++ +Q Q + +RLE A RF+ LS +R +
Sbjct: 19 RLEELSGLITDIDQQQRTQTLA-------INRLENGARAPSSRFDDLSDVGDRNGGRFAH 71
Query: 63 HNVSHGNTNSGSSSSVISATVVGSQSTFVGHTQSAVVGKQSTSSMSSQPFQVRHIKLEFP 122
HNV G+ F GH + G + P R+ KL+FP
Sbjct: 72 HNVGRGDRYGRGGDG------------FHGHGRPG--GHRFDGDGDRPP---RYHKLDFP 114
Query: 123 RFNGK-HVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSRPFQSWNDF 181
+F+G+ L ++ + EQ+F TP+ ++ +AS HL W+ + R SW+ F
Sbjct: 115 KFDGRGDPLPFLNRCEQFFRGQRTPEDNKVWLASYHLLDGAQQWYTRLERDHEPPSWHRF 174
Query: 182 TRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRVYGLSND 230
+ L + +GP ++ P L ++ +V++Y F L R LS D
Sbjct: 175 SELLNMRYGPPLHSTPLGELAACRRTTTVDDYAERFLDLLTRTGYLSED 223
>ref|XP_470218.1| Putative retroelement [Oryza sativa] gi|15451608|gb|AAK98732.1|
Putative retroelement [Oryza sativa]
Length = 1923
Score = 853 bits (2205), Expect = 0.0
Identities = 453/997 (45%), Positives = 621/997 (61%), Gaps = 25/997 (2%)
Query: 542 VSQLNHFRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEPEMATLLHTYREIFQIPK 601
+S + L ++ + IQK D + V I + +L ++E+FQ P
Sbjct: 4 ISSGKKIKGLMKTESVMHVLQIQKTD--------QTSDVVIPDSIKHVLDRFQEVFQEPT 55
Query: 602 GLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQPSLSPFSSPI 661
+PP R H+I L EGA PV ++PYR+ + K++IE+ V +ML+ G+IQ S S FSSP
Sbjct: 56 EMPPVRNCDHKIPLMEGASPVNLRPYRHTPALKDEIERQVTEMLQSGVIQNSNSAFSSPA 115
Query: 662 ILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRSGYHQILL 721
+LVKKKDGTWR C DY+ LNAITIK +P+P +DELLDEL GA+YF+KLDLR+GYHQI L
Sbjct: 116 LLVKKKDGTWRLCIDYKHLNAITIKGKYPLPVIDELLDELSGAKYFSKLDLRAGYHQIRL 175
Query: 722 KPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFDDILVYS 781
+P + KTAF+TH GHYE+ VM FGLT APATFQ+ MN +LRK LVFFDDIL+YS
Sbjct: 176 QPGEEHKTAFQTHSGHYEYRVMSFGLTGAPATFQKAMNDTLATVLRKFTLVFFDDILIYS 235
Query: 782 PSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIKVIAVLE 841
P SH++H+E V Q+L KLSKCSF ++ YLGH++ GV D K+ VL
Sbjct: 236 PDLPSHIQHLEQVLQLLQAQQWKVKLSKCSFAQQQLAYLGHIIGKDGVTTDPSKIADVLH 295
Query: 842 WPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDA-FKWDESTAKAFDTLKQA 900
W P ++KQLRGFLGL GYYR+F+R++ TI PLT LLKK FKW +AF+ LKQA
Sbjct: 296 WKIPQSVKQLRGFLGLAGYYRKFVRNFGTINKPLTQLLKKGVPFKWTAQMDEAFNALKQA 355
Query: 901 ITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASRMQLQSAYTREFY 960
+ +APVL LPDFS+ F +ETDA G+GAVLSQ HPIA+ SK + + + S Y +E+
Sbjct: 356 LVSAPVLALPDFSKTFTVETDACDMGIGAVLSQDRHPIAFVSKALGPKTRGLSTYEKEYL 415
Query: 961 AITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHKFIGFDFQIEYKPGK 1020
AI A+ ++R YL +F++ TD +L + DQ L TP Q K +G +++ Y+ G
Sbjct: 416 AILLAVDQWRSYLQHDEFVILTDHHNLMHITDQRLHTPLQHKAFTKLMGLQYKVCYRRGT 475
Query: 1021 DNQAADALSR----VMSLSWSAPEHD--FLEQLKKEIGNDSHLQTIVQQCVNNTMDDINY 1074
N AADALSR W+ E +L + K D Q ++ + + ++
Sbjct: 476 SNAAADALSRRDEETNDQLWAVSECQPLWLTAVVKGYETDEQAQQLLTELALHPTAREHF 535
Query: 1075 MVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTAQFYWPNMRQHI 1134
+ +G+L +K ++ I +L Q++ H +PIGGH+G T RV A F WP M++ I
Sbjct: 536 HLVQGVLRYKGKIWIGHNLSLQQQLVTALHASPIGGHSGFPVTYQRVKALFAWPQMKKMI 595
Query: 1135 QKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFGFTVIMVVVDR 1194
Q++++ C CQQAK Y GLLQPLPIPE W V++DFI GLP S + I+VVVD+
Sbjct: 596 QQWVKNCTICQQAKPDLAKYPGLLQPLPIPEGAWQVVSLDFIEGLPKSERYNCILVVVDK 655
Query: 1195 LSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQHLFQMQGTT 1254
S+YAHF+PL +S VA +++ + KLHGMPK +ISDRDK+FTSK W+ LF G
Sbjct: 656 FSRYAHFVPLSHPFSALDVAVSYMKNIYKLHGMPKVLISDRDKIFTSKLWEFLFLKSGIA 715
Query: 1255 LSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVEL---WYNTFLHTSLG 1311
L +S+ YHPQ+DGQ++ VN+CLEM+LRCFT P FK +TW+ L WYNT H++L
Sbjct: 716 LHLSSAYHPQSDGQTKRVNQCLEMFLRCFTNAAP---FKWVTWLHLAGYWYNTCFHSALN 772
Query: 1312 MSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVMKSNADKK 1371
+PF+ LYG P L ++ ++ L +R + L+++L R QQ MK +ADK
Sbjct: 773 KTPFEVLYGHNPLQL-GVTMETCAIPDLAVWLHERKLMAELLQQHLHRVQQKMKFHADKN 831
Query: 1372 RKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYKLQLPETAR 1431
R F VGD V +KLQPY Q SVA R +KL +++GPF ++A+VG VAYKLQLP+ +
Sbjct: 832 RSFREFAVGDWVFLKLQPYVQKSVASRACHKLAFKFYGPFQILARVGTVAYKLQLPDDST 891
Query: 1432 IHPVFHVSQLKIFKGLTTEPYFPLPLTTMEEGPVIQPEVILNVRNIIRGDRKVEQLLVKW 1491
IHPVFHVSQLK+ G + LP + P IL+ R I +G+R V Q+LV W
Sbjct: 892 IHPVFHVSQLKVAHGFKHQVQSRLPKFLKS---TVYPLQILDQRLIRKGNRTVSQVLVYW 948
Query: 1492 KDMQNSEATWEDKQEMLDSYPNLNLEDKIVLEGEGNV 1528
D +ATWED++++ +P + +GEG V
Sbjct: 949 SDSVAEDATWEDREDLQQRFPMALAWGQATFQGEGVV 985
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,684,803,733
Number of Sequences: 2540612
Number of extensions: 117091076
Number of successful extensions: 468103
Number of sequences better than 10.0: 36629
Number of HSP's better than 10.0 without gapping: 2979
Number of HSP's successfully gapped in prelim test: 33652
Number of HSP's that attempted gapping in prelim test: 340530
Number of HSP's gapped (non-prelim): 81205
length of query: 1569
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1427
effective length of database: 502,593,490
effective search space: 717200910230
effective search space used: 717200910230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)
Medicago: description of AC124965.10