BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124963.10 - phase: 0 /pseudo
(214 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa (japonica cultiva... 50 4e-05
gb|AAX95804.1| retrotransposon protein, putative, unclassified [... 47 3e-04
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 47 4e-04
emb|CAE04095.3| OSJNBa0096F01.4 [Oryza sativa (japonica cultivar... 45 0.001
gb|AAP54995.1| hypothetical protein [Oryza sativa (japonica cult... 44 0.004
gb|AAX96297.1| retrotransposon protein, putative, unclassified [... 43 0.005
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 42 0.012
dbj|BAD81862.1| alpha NAC-like protein [Oryza sativa (japonica c... 41 0.020
gb|AAU89733.1| hypothetical protein [Solanum tuberosum] 41 0.026
ref|XP_471624.1| OSJNBa0029L02.10 [Oryza sativa (japonica cultiv... 40 0.044
ref|XP_475426.1| putative non-LTR retroelement reverse transcrip... 40 0.058
gb|AAP53436.1| putative retroelement [Oryza sativa (japonica cul... 39 0.075
emb|CAI44611.1| P0650D04.15 [Oryza sativa (japonica cultivar-gro... 39 0.075
gb|AAT85026.1| hypothetical protein [Oryza sativa (japonica cult... 39 0.075
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 38 0.17
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 38 0.22
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 37 0.29
ref|NP_913121.1| P0001B06.26 [Oryza sativa (japonica cultivar-gr... 37 0.29
ref|XP_474809.1| OSJNBa0014F04.20 [Oryza sativa (japonica cultiv... 36 0.83
gb|AAV25285.1| hypothetical protein [Oryza sativa (japonica cult... 36 0.83
>emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa (japonica cultivar-group)]
Length = 779
Score = 50.1 bits (118), Expect = 4e-05
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 138 GVEGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDR 197
G GG S GS +W+++ L + W + ++G+G +V FW DVW+GE+ L +
Sbjct: 538 GQGGGFFQSSPEGGSQFWKSL--LEVKNWMKLGSAYNIGNGEAVRFWDDVWLGEVPLKIQ 595
Query: 198 FSRLYELSLLKGKTIA 213
F +Y + KT++
Sbjct: 596 FPYIYSICANPDKTVS 611
>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 849
Score = 47.4 bits (111), Expect = 3e-04
Identities = 24/76 (31%), Positives = 38/76 (49%), Gaps = 3/76 (3%)
Query: 139 VEGGNLCSGGRDG-SAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDR 197
+ GG +G S +WR + + + W LGDGS+ FW DVW+G+ L +
Sbjct: 609 MNGGGFFQSSTEGCSQFWRGLHEV--KHWLKLGSCYDLGDGSATRFWDDVWLGDTPLKIK 666
Query: 198 FSRLYELSLLKGKTIA 213
F +Y + GKT++
Sbjct: 667 FPYIYSIVADPGKTVS 682
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 47.0 bits (110), Expect = 4e-04
Identities = 21/73 (28%), Positives = 37/73 (49%), Gaps = 2/73 (2%)
Query: 141 GGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSR 200
GG S + S +W+ + + W S +G+G + FW+DVW+GE L ++
Sbjct: 431 GGFFQSKAEESSQFWKGLHEVKK--WMDLGSSYKVGNGKATNFWSDVWIGETPLKTQYPN 488
Query: 201 LYELSLLKGKTIA 213
+Y + K KT++
Sbjct: 489 IYRMCADKEKTVS 501
>emb|CAE04095.3| OSJNBa0096F01.4 [Oryza sativa (japonica cultivar-group)]
Length = 633
Score = 45.1 bits (105), Expect = 0.001
Identities = 22/65 (33%), Positives = 31/65 (46%), Gaps = 2/65 (3%)
Query: 140 EGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFS 199
EGG +GS +W+ + L + W +GDG +LFW DVWV L F
Sbjct: 414 EGGVFQCRAEEGSQFWKGV--LSTRDWVKLGTEWLVGDGRHILFWKDVWVHPCPLKTSFP 471
Query: 200 RLYEL 204
L+E+
Sbjct: 472 LLFEI 476
>gb|AAP54995.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37536812|ref|NP_922708.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
gi|18873843|gb|AAL79789.1| hypothetical protein [Oryza
sativa]
Length = 137
Score = 43.5 bits (101), Expect = 0.004
Identities = 18/42 (42%), Positives = 27/42 (63%)
Query: 171 VSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYELSLLKGKTI 212
+ + +GDG+ LFW DVW G+ L ++ LY +SL GKT+
Sbjct: 1 MEKKVGDGNYTLFWEDVWYGQTPLRVQYPGLYGVSLQCGKTV 42
>gb|AAX96297.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 281
Score = 43.1 bits (100), Expect = 0.005
Identities = 17/42 (40%), Positives = 27/42 (63%)
Query: 172 SRSLGDGSSVLFWTDVWVGELSLHDRFSRLYELSLLKGKTIA 213
S+ +G+G LFW D W+G L+++F LY ++L K T+A
Sbjct: 34 SKVIGNGEKTLFWEDSWIGGKPLNEQFPNLYNITLTKHITVA 75
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 42.0 bits (97), Expect = 0.012
Identities = 25/85 (29%), Positives = 40/85 (46%), Gaps = 16/85 (18%)
Query: 121 VLVDRDSLWFRVLAAR---NGVEGGNLCSGGRDGSAWWRNIAA------LPSEGWFHNNV 171
++ DR SLW RVL ++ G+ + R+ S+ WR+I + +P W
Sbjct: 121 LMKDRTSLWARVLRSKYRIGGLRDTTWINTKRNASSTWRSIKSGLREVVIPGMNWV---- 176
Query: 172 SRSLGDGSSVLFWTDVWVGELSLHD 196
+GDG + FW D W+ E + D
Sbjct: 177 ---VGDGKDICFWDDKWLVEDPIRD 198
>dbj|BAD81862.1| alpha NAC-like protein [Oryza sativa (japonica cultivar-group)]
Length = 516
Score = 41.2 bits (95), Expect = 0.020
Identities = 25/81 (30%), Positives = 36/81 (43%), Gaps = 2/81 (2%)
Query: 124 DRDSLWFRVLAARNGVEGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLF 183
D SL +L + V GG G + S +WR + L + W LG+G S+ F
Sbjct: 33 DDKSLCIELLRRKYLVHGGFFQHKGGNVSQFWRGL--LNIKRWMSFGSEWVLGNGESISF 90
Query: 184 WTDVWVGELSLHDRFSRLYEL 204
W DVW G L F ++ +
Sbjct: 91 WQDVWWGTCPLKTLFPAIFRI 111
>gb|AAU89733.1| hypothetical protein [Solanum tuberosum]
Length = 327
Score = 40.8 bits (94), Expect = 0.026
Identities = 26/91 (28%), Positives = 45/91 (48%), Gaps = 10/91 (10%)
Query: 128 LWFRVLAARNGVEGGNLCSGGRD---GSAWWRNIAALPSEGW--FHNNVSRSLGDGSSVL 182
LW V+ A+ G + + CS G+ WR+I L W F + S +G+G +
Sbjct: 165 LWKEVIQAKYGSDS-HWCSNKVSTSYGTGVWRDIRKL----WEIFFGDASLMVGNGEHIQ 219
Query: 183 FWTDVWVGELSLHDRFSRLYELSLLKGKTIA 213
FW D+W+G+ L + F ++ ++ TI+
Sbjct: 220 FWKDIWLGDTPLMNVFPSIFLIASHPDSTIS 250
>ref|XP_471624.1| OSJNBa0029L02.10 [Oryza sativa (japonica cultivar-group)]
gi|39546220|emb|CAE04469.3| OSJNBa0029L02.10 [Oryza
sativa (japonica cultivar-group)]
Length = 389
Score = 40.0 bits (92), Expect = 0.044
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 167 FHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYELSLLKGKTIA 213
F+ + +G+G + LFW D W+G L ++F LY ++L K T+A
Sbjct: 7 FYKFCTNVVGNGRNTLFWEDNWIGGKPLAEQFRDLYNITLTKKITVA 53
>ref|XP_475426.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|46576009|gb|AAT01370.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1614
Score = 39.7 bits (91), Expect = 0.058
Identities = 23/77 (29%), Positives = 34/77 (43%), Gaps = 2/77 (2%)
Query: 126 DSLWFRVLAARNGVEGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWT 185
DSL +L + +GG R S +W+ + L W +GDGS + FW
Sbjct: 1503 DSLCIELLRRKYLQDGGFFQCKERYASQFWKGL--LNIRRWLSLGSVWQVGDGSHISFWR 1560
Query: 186 DVWVGELSLHDRFSRLY 202
DVW G+ L F ++
Sbjct: 1561 DVWWGQCPLRTLFPAIF 1577
>gb|AAP53436.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533694|ref|NP_921149.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19920114|gb|AAM08546.1| Putative retroelement [Oryza
sativa]
Length = 586
Score = 39.3 bits (90), Expect = 0.075
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 152 SAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYELSLLK 208
S +W+ + + + F+ S+ LGDG LFW D W+G L +F L+ ++ K
Sbjct: 385 SHFWQGLMEIKNS--FYKFCSKKLGDGKQTLFWEDNWIGGRPLALQFPTLFNITTTK 439
>emb|CAI44611.1| P0650D04.15 [Oryza sativa (japonica cultivar-group)]
Length = 1579
Score = 39.3 bits (90), Expect = 0.075
Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 2/53 (3%)
Query: 152 SAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYEL 204
S +WR + L GW S+G+G SV FW D W G L F +Y +
Sbjct: 1274 SQFWRGL--LNIRGWMMLGAEWSIGNGLSVKFWKDTWFGNCPLMTLFPAIYRV 1324
>gb|AAT85026.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 352
Score = 39.3 bits (90), Expect = 0.075
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 151 GSAWWRNIAALPSEGWFHNNVSRS-LGDGSSVLFWTDVWVGELSLHDRFSRLYELSLLKG 209
GS WW++I L + +SR LG+GSS FW D+W L RL+ ++ K
Sbjct: 219 GSFWWKDICKLMD---IYRGISRCILGNGSSCSFWDDIWSDGPPLSLHMPRLHSFAINKN 275
Query: 210 KTI 212
++
Sbjct: 276 VSV 278
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 38.1 bits (87), Expect = 0.17
Identities = 34/127 (26%), Positives = 55/127 (42%), Gaps = 20/127 (15%)
Query: 75 FFWGRGERRPQENYLG*LEFCL--SESG-GWRFEGKENKRI*FSIIREVVLVDRDSLWFR 131
F WG + +++ L + C +E G G R NK + + + +L D++SLW R
Sbjct: 688 FLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKAL-VAKVGWRLLQDKESLWAR 746
Query: 132 VLAARNGVEGGNLCSGGRDGSAW---WRNIAA------LPSEGWFHNNVSRSLGDGSSVL 182
V+ + V G S + W WR++A + GW GDG ++
Sbjct: 747 VVRKKYKVGGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVP-------GDGCTIR 799
Query: 183 FWTDVWV 189
FW D W+
Sbjct: 800 FWLDRWL 806
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 37.7 bits (86), Expect = 0.22
Identities = 19/62 (30%), Positives = 33/62 (52%), Gaps = 2/62 (3%)
Query: 152 SAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYELSLLKGKT 211
S +W+ + + + F + ++ +G+G LFW D W+G L +F LY + + K T
Sbjct: 710 SHFWQGVMEVKDD--FFSFCTKIVGNGEKTLFWEDSWLGGKPLAIQFPSLYGIVITKRIT 767
Query: 212 IA 213
IA
Sbjct: 768 IA 769
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana] gi|25411313|pir||C84487 hypothetical protein
At2g07650 [imported] - Arabidopsis thaliana
Length = 732
Score = 37.4 bits (85), Expect = 0.29
Identities = 32/137 (23%), Positives = 55/137 (39%), Gaps = 30/137 (21%)
Query: 75 FFWGRGERRPQENYLG*LEFCL--SESGGWRFEGKENKRI*FSIIREVVLVDRDSLWFRV 132
F WG + +++ + C SE G + ++ + S + ++ D SLW R+
Sbjct: 350 FLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARI 409
Query: 133 LAARNGVEGGNLCSGGRDG---------SAWWRNIA------ALPSEGWFHNNVSRSLGD 177
+ V+ RDG S+ WR++A +P W +GD
Sbjct: 410 MRCNYRVQDV------RDGAWTKVRSVCSSTWRSVALGMREVVIPGLSWV-------IGD 456
Query: 178 GSSVLFWTDVWVGELSL 194
G +LFW D W+ + L
Sbjct: 457 GREILFWMDKWLTNIPL 473
>ref|NP_913121.1| P0001B06.26 [Oryza sativa (japonica cultivar-group)]
Length = 298
Score = 37.4 bits (85), Expect = 0.29
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 2/72 (2%)
Query: 141 GGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSR 200
GG S GS +W+ + + + W + +G G SV FW D+W+GE L +
Sbjct: 34 GGFFQSSTDGGSQFWKGLHEV--KRWMKFGSAYKIGCGDSVQFWDDIWLGESPLKIQCPY 91
Query: 201 LYELSLLKGKTI 212
++ + KT+
Sbjct: 92 IHSVCSDPDKTV 103
>ref|XP_474809.1| OSJNBa0014F04.20 [Oryza sativa (japonica cultivar-group)]
gi|32488041|emb|CAE02854.1| OSJNBa0014F04.20 [Oryza
sativa (japonica cultivar-group)]
Length = 723
Score = 35.8 bits (81), Expect = 0.83
Identities = 17/62 (27%), Positives = 31/62 (49%), Gaps = 3/62 (4%)
Query: 151 GSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYELSLLKGK 210
GS WWR+I +L F ++ G++ LFW D+W + + L+ ++L K
Sbjct: 582 GSFWWRDITSLSDI--FRGIAKCTIQSGATALFWNDLWNDDFKC-TSYPNLFSVTLYKND 638
Query: 211 TI 212
++
Sbjct: 639 SV 640
>gb|AAV25285.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 720
Score = 35.8 bits (81), Expect = 0.83
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 151 GSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLY 202
GS WW++I L F S ++G G SVLFW D W +L L + F L+
Sbjct: 604 GSFWWKDIFRLIP--MFRALSSVTVGSGDSVLFWKDNWNNQL-LENEFPVLF 652
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.339 0.152 0.545
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 377,372,714
Number of Sequences: 2540612
Number of extensions: 15901133
Number of successful extensions: 50829
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 50796
Number of HSP's gapped (non-prelim): 42
length of query: 214
length of database: 863,360,394
effective HSP length: 123
effective length of query: 91
effective length of database: 550,865,118
effective search space: 50128725738
effective search space used: 50128725738
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 72 (32.3 bits)
Medicago: description of AC124963.10