BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124953.9 - phase: 0
(95 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG51263.1| unknown protein [Arabidopsis thaliana] gi|2540312... 87 1e-16
ref|NP_174433.2| shoot gravitropism 2 (SGR2) [Arabidopsis thalia... 87 1e-16
ref|XP_479736.1| putative shoot gravitropism 2 [Oryza sativa (ja... 77 1e-13
gb|AAK17065.1| fibronectin binding autolysin [Staphylococcus cap... 33 2.3
ref|YP_033682.1| Lipoprotein releasing system transmembrane prot... 32 3.0
dbj|BAC24335.1| gltJ [Wigglesworthia glossinidia endosymbiont of... 32 3.0
sp|Q8NGC5|OR6J2_HUMAN Olfactory receptor 6J2 gi|21929046|dbj|BAC... 31 8.8
emb|CAF26073.1| Lipoprotein releasing system transmembrane prote... 31 8.8
>gb|AAG51263.1| unknown protein [Arabidopsis thaliana] gi|25403120|pir||H86440
unknown protein [imported] - Arabidopsis thaliana
Length = 869
Score = 86.7 bits (213), Expect = 1e-16
Identities = 40/52 (76%), Positives = 42/52 (79%)
Query: 12 PDLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDVRWYFCKTSLAHN 63
PDLLKNTPSNIARL+DV+EQ RQKYLA T S SDG DVRWYFCK LA N
Sbjct: 18 PDLLKNTPSNIARLEDVIEQCHGRQKYLAQTRSPSDGSDVRWYFCKVPLAEN 69
>ref|NP_174433.2| shoot gravitropism 2 (SGR2) [Arabidopsis thaliana]
gi|16904659|dbj|BAB71959.1| shoot gravitropism 2
[Arabidopsis thaliana]
Length = 933
Score = 86.7 bits (213), Expect = 1e-16
Identities = 40/52 (76%), Positives = 42/52 (79%)
Query: 12 PDLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDVRWYFCKTSLAHN 63
PDLLKNTPSNIARL+DV+EQ RQKYLA T S SDG DVRWYFCK LA N
Sbjct: 18 PDLLKNTPSNIARLEDVIEQCHGRQKYLAQTRSPSDGSDVRWYFCKVPLAEN 69
>ref|XP_479736.1| putative shoot gravitropism 2 [Oryza sativa (japonica
cultivar-group)] gi|51964620|ref|XP_507094.1| PREDICTED
P0007D08.37 gene product [Oryza sativa (japonica
cultivar-group)] gi|42408390|dbj|BAD09541.1| putative
shoot gravitropism 2 [Oryza sativa (japonica
cultivar-group)]
Length = 937
Score = 76.6 bits (187), Expect = 1e-13
Identities = 35/54 (64%), Positives = 40/54 (73%)
Query: 12 PDLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDVRWYFCKTSLAHNGM 65
PD L+NTPSNIARL+D +E AR+KYLA T S SDG DVRWYFCK LA +
Sbjct: 33 PDSLRNTPSNIARLEDAIEHCAARRKYLARTKSPSDGEDVRWYFCKLPLADKAL 86
>gb|AAK17065.1| fibronectin binding autolysin [Staphylococcus caprae]
Length = 1395
Score = 32.7 bits (73), Expect = 2.3
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 3 EGSNTPVLLPDLLKNTPSNIARLKDVVEQSKARQ 36
EG+NT VLL D +NTP +KDV Q+ Q
Sbjct: 973 EGNNTYVLLQDSTRNTPLGWVNVKDVTSQNIGNQ 1006
>ref|YP_033682.1| Lipoprotein releasing system transmembrane protein lolC [Bartonella
henselae str. Houston-1] gi|49238448|emb|CAF27676.1|
Lipoprotein releasing system transmembrane protein lolC
[Bartonella henselae str. Houston-1]
Length = 422
Score = 32.3 bits (72), Expect = 3.0
Identities = 17/69 (24%), Positives = 34/69 (48%), Gaps = 5/69 (7%)
Query: 13 DLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDVRWYFCKTSLAHNGMYYVLSSI 72
+L N P ++ R+K ++E+ +Q YL + + +F + N M+++LS I
Sbjct: 233 ELFLNDPDSVDRIKPILEKLIDQQVYLIDWRTRNQA-----FFSALQIERNVMFFILSLI 287
Query: 73 CSFCCINLI 81
+N+I
Sbjct: 288 VLVAALNII 296
>dbj|BAC24335.1| gltJ [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis] gi|32490938|ref|NP_871192.1| hypothetical
protein WGLp189 [Wigglesworthia glossinidia endosymbiont
of Glossina brevipalpis]
Length = 240
Score = 32.3 bits (72), Expect = 3.0
Identities = 14/39 (35%), Positives = 22/39 (55%)
Query: 53 WYFCKTSLAHNGMYYVLSSICSFCCINLILYYFTTLLVC 91
WYF + N + ++SS SF + I+Y FT+ L+C
Sbjct: 79 WYFSVWNKVSNSIISIISSSPSFTIFSNIIYLFTSELIC 117
>sp|Q8NGC5|OR6J2_HUMAN Olfactory receptor 6J2 gi|21929046|dbj|BAC06108.1| seven
transmembrane helix receptor [Homo sapiens]
Length = 347
Score = 30.8 bits (68), Expect = 8.8
Identities = 15/46 (32%), Positives = 25/46 (53%)
Query: 47 DGGDVRWYFCKTSLAHNGMYYVLSSICSFCCINLILYYFTTLLVCI 92
D G + C + A M ++LSS+ CCI L+ Y +T +++ I
Sbjct: 179 DSGPLLALACADTTAIELMDFMLSSMVILCCIVLVAYSYTYIILTI 224
>emb|CAF26073.1| Lipoprotein releasing system transmembrane protein lolC [Bartonella
quintana str. Toulouse] gi|49474194|ref|YP_032236.1|
Lipoprotein releasing system transmembrane protein lolC
[Bartonella quintana str. Toulouse]
Length = 422
Score = 30.8 bits (68), Expect = 8.8
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 13 DLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDVRWYFCKTSLAHNGMYYVLSSI 72
+L N P + ++K +VE++ +Q YL + +F + N M+++LS I
Sbjct: 233 ELFLNDPDAVDQIKPIVEKAIDQQVYLIDWRMRNQA-----FFSALQIERNVMFFILSLI 287
Query: 73 CSFCCINLI 81
+N++
Sbjct: 288 VLVAALNIV 296
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,867,327
Number of Sequences: 2540612
Number of extensions: 5688693
Number of successful extensions: 17836
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17828
Number of HSP's gapped (non-prelim): 8
length of query: 95
length of database: 863,360,394
effective HSP length: 71
effective length of query: 24
effective length of database: 682,976,942
effective search space: 16391446608
effective search space used: 16391446608
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 68 (30.8 bits)
Medicago: description of AC124953.9