BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124953.2 + phase: 0
(53 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB91581.1| putative protein [Arabidopsis thaliana] gi|15228... 52 6e-06
gb|AAG52315.1| hypothetical protein, 5' partial; 93859-91015 [Ar... 51 9e-06
ref|NP_174828.1| AT hook motif-containing protein-related [Arabi... 51 9e-06
dbj|BAB10788.1| replication protein A1-like [Arabidopsis thalian... 49 3e-05
ref|NP_198346.1| hypothetical protein [Arabidopsis thaliana] 49 3e-05
ref|NP_189741.1| hypothetical protein [Arabidopsis thaliana] 49 4e-05
gb|AAM15435.1| unknown protein [Arabidopsis thaliana] gi|2019761... 49 5e-05
gb|AAD32757.1| putative helicase [Arabidopsis thaliana] gi|25353... 48 6e-05
dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana] 48 6e-05
ref|NP_187933.1| hypothetical protein [Arabidopsis thaliana] 48 6e-05
emb|CAE04650.2| OSJNBa0061G20.6 [Oryza sativa (japonica cultivar... 48 8e-05
gb|AAF06079.1| F28J9.3 [Arabidopsis thaliana] gi|25403499|pir||F... 47 1e-04
dbj|BAB01023.1| helicase-like protein [Arabidopsis thaliana] 44 9e-04
ref|NP_189677.1| hypothetical protein [Arabidopsis thaliana] 44 9e-04
emb|CAD40309.2| OSJNBb0013O03.4 [Oryza sativa (japonica cultivar... 44 0.001
emb|CAB77854.1| hypothetical protein [Arabidopsis thaliana] gi|4... 42 0.004
ref|NP_913627.1| putative helicase [Oryza sativa (japonica culti... 42 0.006
ref|XP_481695.1| helicase-like protein [Oryza sativa (japonica c... 42 0.006
ref|XP_479365.1| helicase-like protein [Oryza sativa (japonica c... 42 0.006
dbj|BAD81603.1| helicase-like protein [Oryza sativa (japonica cu... 42 0.006
>emb|CAB91581.1| putative protein [Arabidopsis thaliana] gi|15228453|ref|NP_189796.1|
AT hook motif-containing protein-related [Arabidopsis
thaliana] gi|11357786|pir||T48965 hypothetical protein
F4M19.60 - Arabidopsis thaliana
Length = 1752
Score = 51.6 bits (122), Expect = 6e-06
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
RVTS+KGLKILI D++G+ TTNVV+KEVFQN+
Sbjct: 1717 RVTSKKGLKILILDKDGNMQKQTTNVVFKEVFQNI 1751
>gb|AAG52315.1| hypothetical protein, 5' partial; 93859-91015 [Arabidopsis
thaliana]
Length = 729
Score = 50.8 bits (120), Expect = 9e-06
Identities = 24/35 (68%), Positives = 29/35 (82%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
RVTS+KGLKILI D++G TTNVV+KEVFQN+
Sbjct: 694 RVTSKKGLKILILDKDGKLQKQTTNVVFKEVFQNI 728
>ref|NP_174828.1| AT hook motif-containing protein-related [Arabidopsis thaliana]
gi|25511694|pir||D86481 189.6K hypothetical protein
F10O5.11 - Arabidopsis thaliana
gi|12322087|gb|AAG51081.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1678
Score = 50.8 bits (120), Expect = 9e-06
Identities = 24/35 (68%), Positives = 29/35 (82%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
RVTS+KGLKILI D++G TTNVV+KEVFQN+
Sbjct: 1643 RVTSKKGLKILILDKDGKLQKQTTNVVFKEVFQNI 1677
>dbj|BAB10788.1| replication protein A1-like [Arabidopsis thaliana]
gi|3695387|gb|AAC62789.1| contains similarity to
replication protein A1 [Arabidopsis thaliana]
gi|7487549|pir||T01955 hypothetical protein T2L5.8 -
Arabidopsis thaliana
Length = 1073
Score = 49.3 bits (116), Expect = 3e-05
Identities = 23/35 (65%), Positives = 28/35 (79%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
RVTS+KGLK LI D++G TTNVV+KEVFQN+
Sbjct: 1038 RVTSKKGLKFLILDKDGKLQKQTTNVVFKEVFQNI 1072
>ref|NP_198346.1| hypothetical protein [Arabidopsis thaliana]
Length = 1033
Score = 49.3 bits (116), Expect = 3e-05
Identities = 23/35 (65%), Positives = 28/35 (79%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
RVTS+KGLK LI D++G TTNVV+KEVFQN+
Sbjct: 998 RVTSKKGLKFLILDKDGKLQKQTTNVVFKEVFQNI 1032
>ref|NP_189741.1| hypothetical protein [Arabidopsis thaliana]
Length = 1099
Score = 48.9 bits (115), Expect = 4e-05
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
RVTS+KGLK+LI D+ G+ T NVV+KE+FQN+
Sbjct: 1063 RVTSKKGLKVLIVDKEGNTQSQTMNVVFKEIFQNI 1097
>gb|AAM15435.1| unknown protein [Arabidopsis thaliana] gi|20197614|gb|AAM15154.1|
unknown protein [Arabidopsis thaliana]
Length = 1308
Score = 48.5 bits (114), Expect = 5e-05
Identities = 24/35 (68%), Positives = 28/35 (79%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
RV SR+GLKILI DE G+ TTNVV+KEVFQN+
Sbjct: 1267 RVKSRRGLKILIIDEEGNRGKTTTNVVFKEVFQNL 1301
>gb|AAD32757.1| putative helicase [Arabidopsis thaliana] gi|25353663|pir||H84486
probable helicase [imported] - Arabidopsis thaliana
Length = 1241
Score = 48.1 bits (113), Expect = 6e-05
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
RVTS+KGLK+LI D+ G+ T NVV+KE+FQN+
Sbjct: 1205 RVTSKKGLKVLIVDKEGNTQSQTMNVVFKEIFQNL 1239
>dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana]
Length = 1428
Score = 48.1 bits (113), Expect = 6e-05
Identities = 23/35 (65%), Positives = 27/35 (76%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
RVTS+ GLKILI D+ G TTNVV+KEVFQN+
Sbjct: 1394 RVTSKTGLKILILDKEGKIQKQTTNVVFKEVFQNI 1428
>ref|NP_187933.1| hypothetical protein [Arabidopsis thaliana]
Length = 1419
Score = 48.1 bits (113), Expect = 6e-05
Identities = 23/35 (65%), Positives = 27/35 (76%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
RVTS+ GLKILI D+ G TTNVV+KEVFQN+
Sbjct: 1385 RVTSKTGLKILILDKEGKIQKQTTNVVFKEVFQNI 1419
>emb|CAE04650.2| OSJNBa0061G20.6 [Oryza sativa (japonica cultivar-group)]
gi|50923469|ref|XP_472095.1| OSJNBa0061G20.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1410
Score = 47.8 bits (112), Expect = 8e-05
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
R TSRKGLKILI D++G+C T NVVY E+ Q +
Sbjct: 595 RATSRKGLKILIVDDDGNCSSETRNVVYHEILQAI 629
>gb|AAF06079.1| F28J9.3 [Arabidopsis thaliana] gi|25403499|pir||F86486 protein
F28J9.3 [imported] - Arabidopsis thaliana
Length = 436
Score = 47.0 bits (110), Expect = 1e-04
Identities = 22/35 (62%), Positives = 28/35 (79%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
RVT++KGLKILI D+ G TTNVV+K+VFQN+
Sbjct: 401 RVTAKKGLKILILDKYGKLHKQTTNVVFKKVFQNI 435
>dbj|BAB01023.1| helicase-like protein [Arabidopsis thaliana]
Length = 1669
Score = 44.3 bits (103), Expect = 9e-04
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
RV S+ GLK+LITD G + TTNVV+KE+F+N+
Sbjct: 1635 RVKSKGGLKVLITDSKGKQKNETTNVVFKEIFRNL 1669
>ref|NP_189677.1| hypothetical protein [Arabidopsis thaliana]
Length = 1473
Score = 44.3 bits (103), Expect = 9e-04
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
RV S+ GLK+LITD G + TTNVV+KE+F+N+
Sbjct: 1439 RVKSKGGLKVLITDSKGKQKNETTNVVFKEIFRNL 1473
>emb|CAD40309.2| OSJNBb0013O03.4 [Oryza sativa (japonica cultivar-group)]
Length = 2052
Score = 43.9 bits (102), Expect = 0.001
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
R TSR GLKILI D+N C T+NVVY E+ +++
Sbjct: 1384 RATSRSGLKILIEDDNESCASETSNVVYHEILRSL 1418
>emb|CAB77854.1| hypothetical protein [Arabidopsis thaliana]
gi|4263056|gb|AAD15325.1| hypothetical protein
[Arabidopsis thaliana] gi|25407229|pir||G85046
hypothetical protein AT4g03690 [imported] - Arabidopsis
thaliana gi|15236364|ref|NP_192278.1| hypothetical
protein [Arabidopsis thaliana]
Length = 570
Score = 42.0 bits (97), Expect = 0.004
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
RV S+ LK+LITD G TTNV++KE+FQN+
Sbjct: 535 RVKSKARLKVLITDSKGKQKKETTNVIFKEIFQNL 569
>ref|NP_913627.1| putative helicase [Oryza sativa (japonica cultivar-group)]
Length = 1453
Score = 41.6 bits (96), Expect = 0.006
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
R TSR GL+ILI D++G C T NVVY EV + V
Sbjct: 1407 RSTSRDGLRILIKDDDGACSSKTRNVVYHEVLEAV 1441
>ref|XP_481695.1| helicase-like protein [Oryza sativa (japonica cultivar-group)]
gi|38424032|dbj|BAD01692.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
gi|38637630|dbj|BAD03910.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 1430
Score = 41.6 bits (96), Expect = 0.006
Identities = 19/31 (61%), Positives = 23/31 (73%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEV 49
RVTSR GLKILI +++G C T N+VY EV
Sbjct: 1357 RVTSRSGLKILIENDDGSCGTQTKNIVYSEV 1387
>ref|XP_479365.1| helicase-like protein [Oryza sativa (japonica cultivar-group)]
gi|50509840|dbj|BAD32013.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
gi|34394334|dbj|BAC84865.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 1516
Score = 41.6 bits (96), Expect = 0.006
Identities = 19/31 (61%), Positives = 23/31 (73%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEV 49
RVTSR GLKILI +++G C T N+VY EV
Sbjct: 1443 RVTSRSGLKILIENDDGSCGTQTKNIVYSEV 1473
>dbj|BAD81603.1| helicase-like protein [Oryza sativa (japonica cultivar-group)]
Length = 1652
Score = 41.6 bits (96), Expect = 0.006
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
R TSR GL+ILI D++G C T NVVY EV + V
Sbjct: 1606 RSTSRDGLRILIKDDDGACSSKTRNVVYHEVLEAV 1640
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.327 0.140 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,705,129
Number of Sequences: 2540612
Number of extensions: 2141969
Number of successful extensions: 6825
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6787
Number of HSP's gapped (non-prelim): 38
length of query: 53
length of database: 863,360,394
effective HSP length: 29
effective length of query: 24
effective length of database: 789,682,646
effective search space: 18952383504
effective search space used: 18952383504
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 69 (31.2 bits)
Medicago: description of AC124953.2