BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124953.18 + phase: 0
(391 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_493879.1| putative RING-H2 finger protein [Oryza sativa] ... 305 2e-81
gb|AAU44196.1| putative ring-H2 finger protein [Oryza sativa (ja... 280 4e-74
dbj|BAA97489.1| unnamed protein product [Arabidopsis thaliana] 280 5e-74
gb|AAL36069.1| AT5g59550/f2o15_210 [Arabidopsis thaliana] gi|184... 280 5e-74
gb|AAM67317.1| unknown [Arabidopsis thaliana] gi|20334832|gb|AAM... 279 9e-74
gb|AAP68298.1| At3g46620 [Arabidopsis thaliana] gi|6523065|emb|C... 276 6e-73
ref|NP_912399.1| unknown protein [Oryza sativa (japonica cultiva... 236 1e-60
dbj|BAD87366.1| RING-H2 finger protein-like [Oryza sativa (japon... 191 4e-47
ref|NP_914351.1| putative RING-H2 finger protein RHC2a [Oryza sa... 177 4e-43
ref|NP_915831.1| P0003D09.21 [Oryza sativa (japonica cultivar-gr... 141 3e-32
dbj|BAD68141.1| putative ring finger protein 126 isoform 1 [Oryz... 141 3e-32
gb|AAM20263.1| unknown protein [Arabidopsis thaliana] gi|1502836... 129 2e-28
gb|AAP42739.1| At2g40830 [Arabidopsis thaliana] gi|22655078|gb|A... 128 3e-28
gb|AAN18152.1| At3g19950/MPN9_19 [Arabidopsis thaliana] gi|20465... 124 4e-27
dbj|BAB01310.1| unnamed protein product [Arabidopsis thaliana] 124 4e-27
gb|AAP54362.1| putative zinc finger protein [Oryza sativa (japon... 110 6e-23
gb|AAT77283.1| hypothetical protein [Oryza sativa (japonica cult... 107 8e-22
dbj|BAD67937.1| putative ring finger protein 126 isoform 1 [Oryz... 105 2e-21
ref|XP_467971.1| zinc finger -like [Oryza sativa (japonica culti... 105 2e-21
dbj|BAD35703.1| zinc finger-like [Oryza sativa (japonica cultiva... 103 9e-21
>ref|XP_493879.1| putative RING-H2 finger protein [Oryza sativa]
gi|14719329|gb|AAK73147.1| putative RING-H2 finger
protein [Oryza sativa]
Length = 386
Score = 305 bits (781), Expect = 2e-81
Identities = 177/391 (45%), Positives = 229/391 (58%), Gaps = 42/391 (10%)
Query: 2 SSHWCYRCNKFVRVWRL---GMPICPDCDSGFLEDVEQSTHSANTVGGRRMRFPMAAAMY 58
SS+WCY C++FVR CPDC GFLE+ M P A Y
Sbjct: 19 SSYWCYSCDRFVRAPAPHDDSAVACPDCGGGFLEE---------------MSAPPPRAAY 63
Query: 59 MIGHRNNNYNQNTFRRHRRNNVNG--GDISPFNPIIMIRGGGGSSEGTSREREENNEFEL 116
+ R ++ N RR RR GD SPFNP+I++R ++ G FEL
Sbjct: 64 LRRPRAHHANDLRLRRTRRAAAAAAAGDRSPFNPVIVLRRSPAAA-GDDDSLAAATSFEL 122
Query: 117 FYEDGAGSGLRALPPRMSELILGSGFERVMEQLSHVEANRSGNEGHNQQHLPALKSAVEL 176
FY+DGAGSGLR LP MS+ ++GSGFER+++QL+ +EA G +++ PA K++VE
Sbjct: 123 FYDDGAGSGLRPLPETMSDFLMGSGFERLLDQLTQIEA---GGLARARENPPASKASVES 179
Query: 177 LPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQNSCPVCRHE 236
+PT+ I SH+ +SHCAVCKEPFELG AREMPC HIYH +CILPWLA++NSCPVCRHE
Sbjct: 180 MPTVTIAASHVGADSHCAVCKEPFELGDEAREMPCSHIYHQDCILPWLALRNSCPVCRHE 239
Query: 237 LPCES--PQINNEISNSNEDENVGLTIWRLPGGGFAVGRFSGDGGGGENRMEHPIVYTEV 294
+P ++ P+ +N E+E VGLTIWRLPGGGFAVGRF+ GG E P+VYTE+
Sbjct: 240 MPTDAARPRPSNA---GTEEETVGLTIWRLPGGGFAVGRFA--GGRRPEERELPVVYTEM 294
Query: 295 DGAFNNVGEPRRISWSLTSSRGGIGRSRGGAFRRMLSNLFGCL-RGGGVRNQHSPFTTRE 353
DG FNN G PRRISW SR + A RR+ N+F C R +Q S +R
Sbjct: 295 DGGFNNGGAPRRISWGSRQSRS----TERSAIRRIFRNVFSCFGRSHSSNSQASSSHSRP 350
Query: 354 FPQPMTMRNNSASHTNENPSLRSRRT-WSMD 383
+ R+ SH + RSR T W ++
Sbjct: 351 ELNDASDRSAVFSHGS-----RSRSTSWRLE 376
>gb|AAU44196.1| putative ring-H2 finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 333
Score = 280 bits (717), Expect = 4e-74
Identities = 160/341 (46%), Positives = 208/341 (60%), Gaps = 24/341 (7%)
Query: 49 MRFPMAAAMYMIGHRNNNYNQNTFRRHRRNNVNG--GDISPFNPIIMIRGGGGSSEGTSR 106
M P A Y+ R ++ N RR RR GD SPFNP+I++R ++ G
Sbjct: 1 MSAPPPRAAYLRRPRAHHANDLRLRRTRRAAAAAAAGDRSPFNPVIVLRRSPAAA-GDDD 59
Query: 107 EREENNEFELFYEDGAGSGLRALPPRMSELILGSGFERVMEQLSHVEANRSGNEGHNQQH 166
FELFY+DGAGSGLR LP MS+ ++GSGFER+++QL+ +EA G +++
Sbjct: 60 SLAAATSFELFYDDGAGSGLRPLPETMSDFLMGSGFERLLDQLTQIEA---GGLARAREN 116
Query: 167 LPALKSAVELLPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAI 226
PA K++VE +PT+ I SH+ +SHCAVCKEPFELG AREMPC HIYH +CILPWLA+
Sbjct: 117 PPASKASVESMPTVTIAASHVGADSHCAVCKEPFELGDEAREMPCSHIYHQDCILPWLAL 176
Query: 227 QNSCPVCRHELPCES--PQINNEISNSNEDENVGLTIWRLPGGGFAVGRFSGDGGGGENR 284
+NSCPVCRHE+P ++ P+ +N E+E VGLTIWRLPGGGFAVGRF+ GG
Sbjct: 177 RNSCPVCRHEMPTDAARPRPSNA---GTEEETVGLTIWRLPGGGFAVGRFA--GGRRPEE 231
Query: 285 MEHPIVYTEVDGAFNNVGEPRRISWSLTSSRGGIGRSRGGAFRRMLSNLFGCL-RGGGVR 343
E P+VYTE+DG FNN G PRRISW SR + A RR+ N+F C R
Sbjct: 232 RELPVVYTEMDGGFNNGGAPRRISWGSRQSRS----TERSAIRRIFRNVFSCFGRSHSSN 287
Query: 344 NQHSPFTTREFPQPMTMRNNSASHTNENPSLRSRRT-WSMD 383
+Q S +R + R+ SH + RSR T W ++
Sbjct: 288 SQASSSHSRPELNDASDRSAVFSHGS-----RSRSTSWRLE 323
>dbj|BAA97489.1| unnamed protein product [Arabidopsis thaliana]
Length = 512
Score = 280 bits (716), Expect = 5e-74
Identities = 161/367 (43%), Positives = 216/367 (57%), Gaps = 64/367 (17%)
Query: 2 SSHWCYRCNKFVRVWR------LGMPICPDCDSGFLEDVEQSTHSANTVGGRRMRFPMAA 55
+S+WCY C +FV VW +G CP CD GF+E + S+ +A + P +
Sbjct: 121 ASYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQINDSSSAAT-----ELTIPAST 175
Query: 56 AMYMIGHRNNNYNQNTFRRHRRNNVNGGDISPFNPIIMIRGGGGSSEGTSREREENNE-- 113
+ I NN ++ RR R G FNP+I+++GG G EREE E
Sbjct: 176 EVRSI----NNNRRSVIRRRR-----SGRRPSFNPVIVLQGGAG-------EREEGEEGD 219
Query: 114 -------FELFYEDGAGSGLRALPPRMSELILGSGFERVMEQLSHVEAN-----RSGNEG 161
FE +Y+DG+GSGLR LP +SE+++GSGFER++EQLS +EA+ RSGN
Sbjct: 220 AARDRRAFEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASATGIGRSGNP- 278
Query: 162 HNQQHLPALKSAVELLPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECIL 221
PA KSA+E LP +EI++ H+ E++CAVC E FE AREMPCKH++H++CI+
Sbjct: 279 ------PASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIV 332
Query: 222 PWLAIQNSCPVCRHELPCESPQINNEISNSNEDEN-VGLTIWRLPGGGFAVGRFSGDGGG 280
PWL+I+NSCPVCR ELP E N SN+NE++N VG+TIWRLPGGGFAVGRF+
Sbjct: 333 PWLSIRNSCPVCRFELPSEP----NRRSNNNEEDNAVGMTIWRLPGGGFAVGRFNAAMRD 388
Query: 281 GENRMEHPIVYTEVDGA--FNNVGEPRRISW-------SLTSSRGGIGRSRGGAFRRMLS 331
GE + P+V TE+DG N+ PRRISW S+ G G GG RRM+
Sbjct: 389 GERVL--PVVLTEMDGGGIGNSQDGPRRISWVRSHGTLESDSNGTGSGSGSGGRLRRMVR 446
Query: 332 NLFGCLR 338
+ +R
Sbjct: 447 GMVSLMR 453
>gb|AAL36069.1| AT5g59550/f2o15_210 [Arabidopsis thaliana]
gi|18424254|ref|NP_568910.1| zinc finger (C3HC4-type
RING finger) family protein [Arabidopsis thaliana]
gi|15450687|gb|AAK96615.1| AT5g59550/f2o15_210
[Arabidopsis thaliana]
Length = 407
Score = 280 bits (716), Expect = 5e-74
Identities = 161/367 (43%), Positives = 216/367 (57%), Gaps = 64/367 (17%)
Query: 2 SSHWCYRCNKFVRVWR------LGMPICPDCDSGFLEDVEQSTHSANTVGGRRMRFPMAA 55
+S+WCY C +FV VW +G CP CD GF+E + S+ +A + P +
Sbjct: 16 ASYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQINDSSSAAT-----ELTIPAST 70
Query: 56 AMYMIGHRNNNYNQNTFRRHRRNNVNGGDISPFNPIIMIRGGGGSSEGTSREREENNE-- 113
+ I NN ++ RR R G FNP+I+++GG G EREE E
Sbjct: 71 EVRSI----NNNRRSVIRRRR-----SGRRPSFNPVIVLQGGAG-------EREEGEEGD 114
Query: 114 -------FELFYEDGAGSGLRALPPRMSELILGSGFERVMEQLSHVEAN-----RSGNEG 161
FE +Y+DG+GSGLR LP +SE+++GSGFER++EQLS +EA+ RSGN
Sbjct: 115 AARDRRAFEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASATGIGRSGNP- 173
Query: 162 HNQQHLPALKSAVELLPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECIL 221
PA KSA+E LP +EI++ H+ E++CAVC E FE AREMPCKH++H++CI+
Sbjct: 174 ------PASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIV 227
Query: 222 PWLAIQNSCPVCRHELPCESPQINNEISNSNEDEN-VGLTIWRLPGGGFAVGRFSGDGGG 280
PWL+I+NSCPVCR ELP E N SN+NE++N VG+TIWRLPGGGFAVGRF+
Sbjct: 228 PWLSIRNSCPVCRFELPSEP----NRRSNNNEEDNAVGMTIWRLPGGGFAVGRFNAAMRD 283
Query: 281 GENRMEHPIVYTEVDGA--FNNVGEPRRISW-------SLTSSRGGIGRSRGGAFRRMLS 331
GE + P+V TE+DG N+ PRRISW S+ G G GG RRM+
Sbjct: 284 GERVL--PVVLTEMDGGGIGNSQDGPRRISWVRSHGTLESDSNGTGSGSGSGGRLRRMVR 341
Query: 332 NLFGCLR 338
+ +R
Sbjct: 342 GMVSLMR 348
>gb|AAM67317.1| unknown [Arabidopsis thaliana] gi|20334832|gb|AAM16172.1|
At2g39720/T5I7.2 [Arabidopsis thaliana]
gi|2642154|gb|AAB87121.1| expressed protein [Arabidopsis
thaliana] gi|18377864|gb|AAL67118.1| At2g39720/T5I7.2
[Arabidopsis thaliana] gi|3790595|gb|AAC69860.1| RING-H2
finger protein RHC2a [Arabidopsis thaliana]
gi|7487694|pir||T01001 hypothetical protein At2g39720
[imported] - Arabidopsis thaliana
gi|18405141|ref|NP_030517.1| zinc finger (C3HC4-type
RING finger) family protein [Arabidopsis thaliana]
Length = 401
Score = 279 bits (714), Expect = 9e-74
Identities = 171/407 (42%), Positives = 224/407 (55%), Gaps = 41/407 (10%)
Query: 3 SHWCYRCNKFVRVWRLGMPICPDCDSGFLEDVEQS---------THSANTVGGRRMRFPM 53
S+WCY C++FV W CPDCD GFLE +++ T + T RFP
Sbjct: 5 SYWCYSCSRFV--WVSDSISCPDCDGGFLELIQEPLDFTPSDSFTTTTTTQHRSPTRFPP 62
Query: 54 AAAMYMIG----HRNNNYNQNTFRRHRRNNVNGGDISPFNPIIMIRGGGGS-SEGTSRER 108
++ H +N+ R R N SP NP+I++RG + S E
Sbjct: 63 PSSSSSTPSASMHADNSPTPTIVTRTRSNR------SP-NPVIVLRGSAAAPSSDVVSEG 115
Query: 109 EENNEFELFYEDGAGSGLRALPPRMSELILGSGFERVMEQLSHVEANRSGNEGHNQQHLP 168
+ + F+++Y+DG SGLR LPP M+E +LGSGF+R+++Q+S +E N + N + +H P
Sbjct: 116 LDRSAFQMYYDDGTDSGLRPLPPSMTEFLLGSGFDRLLDQISQIELNTNRNL-RSCEHPP 174
Query: 169 ALKSAVELLPTIEINESHM--NVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAI 226
A KSA+E LP IEI+ +H+ + +SHCAVCKE F L SAREMPC HIYH +CILPWLAI
Sbjct: 175 ASKSAIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAI 234
Query: 227 QNSCPVCRHELPCE--------SPQINNEISNSNEDENVGLTIWRLPGGGFAVGRFSGDG 278
+NSCPVCRHELP E + + ED GLTIWRLPGGGFAVGR G
Sbjct: 235 RNSCPVCRHELPAEDLTDGTGAALTAVTATAEEEEDSAAGLTIWRLPGGGFAVGRIPGGW 294
Query: 279 GGGENRMEHPIVYTEVDGA-FNNVGEPRRISW-SLTSSR-GGIGRSRGGAFRRMLSNLFG 335
GG+ M P+VYTEVDG + PRR++W S R GG R RGG F + LFG
Sbjct: 295 RGGDRMM--PVVYTEVDGGRLGDERLPRRVAWGSRRGGRDGGGSRERGGGFAGRIMRLFG 352
Query: 336 CLRG--GGVRNQHSPFTTREFPQPMTMRNNSASHTNENPSLRSRRTW 380
C G G + + + +T R S S + S RR W
Sbjct: 353 CFSGSSGSIAAAAAASSGSGSRIRVTRRTRSFSMFSTASSSSRRRNW 399
>gb|AAP68298.1| At3g46620 [Arabidopsis thaliana] gi|6523065|emb|CAB62332.1|
putative protein [Arabidopsis thaliana]
gi|20260608|gb|AAM13202.1| putative protein [Arabidopsis
thaliana] gi|11357352|pir||T45599 hypothetical protein
F12A12.140 - Arabidopsis thaliana
gi|15232595|ref|NP_190246.1| zinc finger (C3HC4-type
RING finger) family protein [Arabidopsis thaliana]
Length = 395
Score = 276 bits (707), Expect = 6e-73
Identities = 155/355 (43%), Positives = 211/355 (58%), Gaps = 42/355 (11%)
Query: 2 SSHWCYRCNKFVRVWR-----LGMPICPDCDSGFLEDVEQSTHSANTVGGRRMRFPMAAA 56
+S+WCY C +F+ VW G+ +CP C+ GF+E++E S++S TV P +
Sbjct: 29 TSYWCYSCTRFISVWEDQDANAGV-LCPYCNGGFIEEIEDSSNS--TVAAIPASTPEVRS 85
Query: 57 MYMIGHRNNNYNQNTFRRHRRNNVNGGDISPFNPIIMIRGGGGSSEGTSREREENN---- 112
+ +++ RR R N FNP+I++ GGGG G E EE +
Sbjct: 86 V-------EETHRSIIRRRRSNRRTS-----FNPVIVLHGGGGGGAGERVENEEGDGATR 133
Query: 113 ---EFELFYEDGAGSGLRALPPRMSELILGSGFERVMEQLSHVEANRSGNEGHNQQHLPA 169
+E +Y+DG+GSGLR LP +SE+++GSGFER++EQLS +EA SGN + PA
Sbjct: 134 ERRAYEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEA--SGNGIGRSGNPPA 191
Query: 170 LKSAVELLPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQNS 229
KSA+E LP +EI++ H E++CAVC E FE GI REMPCKHI+H +CI+PWL+I+NS
Sbjct: 192 SKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNS 251
Query: 230 CPVCRHELPCESPQINNEISNSNEDENVGLTIWRLPGGGFAVGRFSGDGGGGENRMEHPI 289
CPVCR ELP + Q +NE E+ VG+TIWRLPGGGFAVGRF+ GE + P+
Sbjct: 252 CPVCRFELPSDPIQRSNE-----EEHAVGMTIWRLPGGGFAVGRFNAGVREGERIL--PV 304
Query: 290 VYTEVDGAFNNVGE-PRRISW-----SLTSSRGGIGRSRGGAFRRMLSNLFGCLR 338
V TE+DG E PRRISW + SR G GG RR + + +R
Sbjct: 305 VLTEMDGGGLGSNEGPRRISWVRAHETPEMSRNGGRSGNGGRLRRAVRGMVSFMR 359
>ref|NP_912399.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|29893617|gb|AAP06871.1| unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 279
Score = 236 bits (601), Expect = 1e-60
Identities = 137/336 (40%), Positives = 178/336 (52%), Gaps = 82/336 (24%)
Query: 3 SHWCYRCNKFVRVWRLGMPICPDCDSGFLEDVEQSTHSANTVGGRRMRFPMAAAMYMIGH 62
S+WCY C++FVRV +CP+CD GFLE Q GRR
Sbjct: 7 SYWCYHCSRFVRV-SPSTVVCPECDGGFLEQFPQPPPRGGGGSGRR-------------- 51
Query: 63 RNNNYNQNTFRRHRRNNVNGGDISPFNPIIMIRGGGGSSEGTSREREENNEFELFYEDGA 122
NP+I++RGG S FEL+Y+DG+
Sbjct: 52 -----------------------GAMNPVIVLRGGSLSG------------FELYYDDGS 76
Query: 123 GSGLRALPPRMSELILGSGFERVMEQLSHVEANRSGNEGHNQQHLPALKSAVELLPTIEI 182
G GLR LP +S L++GSGF R+++Q S +EA PA K+AVE +P++ +
Sbjct: 77 GDGLRPLPGDVSHLLMGSGFHRLLDQFSRLEAAAP--------RPPASKAAVESMPSVTV 128
Query: 183 NESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQNSCPVCRHELPCESP 242
S +HCAVC+E FE G SAREMPCKH+YH +CILPWL+++NSCPVCR ELP +
Sbjct: 129 AGSG----AHCAVCQEAFEPGASAREMPCKHVYHQDCILPWLSLRNSCPVCRRELPAAAA 184
Query: 243 QINNEISNSNEDENVGLTIWRLPGGGFAVGRFSGDGGGGENRMEHPIVYTEVDGAFNNVG 302
+ + GLTIWRLP GGFAVGRF+G R + P+VYTE+DG F+N
Sbjct: 185 P--------ESEADAGLTIWRLPRGGFAVGRFAGGP-----REQLPVVYTELDGGFSNGV 231
Query: 303 EPRRISWSLTSSR--GGIGRSRGGAFRRMLSNLFGC 336
PRR++W GG GR RR+ NLFGC
Sbjct: 232 GPRRVTWPEGDGHVDGGEGR-----IRRVFRNLFGC 262
>dbj|BAD87366.1| RING-H2 finger protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 334
Score = 191 bits (484), Expect = 4e-47
Identities = 112/268 (41%), Positives = 147/268 (54%), Gaps = 44/268 (16%)
Query: 84 DISPFNP-IIMIRGGGGSSEGTSREREENNEFELFYEDGAGSGLRALPPRMSELILGSGF 142
D SPFNP +I++R + T+ F+L Y+DGA S LR L F
Sbjct: 50 DHSPFNPPVIVLRRSASPDDATT--------FDLLYDDGASSALRPL------------F 89
Query: 143 ERVMEQLSHVEANRSGNEGHNQQHLPALKSAVELLPTIEINESHMNVESHCAVCKEPFEL 202
+R++ ++ N + PA K+AV+ +PTI I H+ +SHCAVCKEPF L
Sbjct: 90 DRLLLRIPSASDNPNP---------PASKAAVDSMPTILIGACHLAADSHCAVCKEPFHL 140
Query: 203 GISAREMPCKHIYHNECILPWLAIQNSCPVCRHELPCESPQINNEIS------NSNED-E 255
AREMPC HIYH+ CILPWLA+ NSCPVCRH +P + N + +S+ED
Sbjct: 141 AAEAREMPCAHIYHHNCILPWLALHNSCPVCRHRMPTDDHDSTNAAAAQAAAGSSDEDAT 200
Query: 256 NVG-LTIWRLPGGGFAVGRFSGDGGGGENRMEHPIVYTEV-DGAFN---NVGEPRRISWS 310
VG LTIWRLPGGG+AVGRF+ GG E P++YT++ DG FN G P I WS
Sbjct: 201 TVGTLTIWRLPGGGYAVGRFAAAGGTRAGERELPVLYTQMDDGGFNGGGGSGSPTMIGWS 260
Query: 311 LTSSRGGIGRSRGGAFRRMLSNLFGCLR 338
SR + + R+ N+F C R
Sbjct: 261 SRGSRS--SQRQRSIIPRLFRNMFACFR 286
>ref|NP_914351.1| putative RING-H2 finger protein RHC2a [Oryza sativa (japonica
cultivar-group)]
Length = 279
Score = 177 bits (450), Expect = 4e-43
Identities = 101/229 (44%), Positives = 132/229 (57%), Gaps = 39/229 (17%)
Query: 84 DISPFNP-IIMIRGGGGSSEGTSREREENNEFELFYEDGAGSGLRALPPRMSELILGSGF 142
D SPFNP +I++R + T+ F+L Y+DGA S LR L F
Sbjct: 50 DHSPFNPPVIVLRRSASPDDATT--------FDLLYDDGASSALRPL------------F 89
Query: 143 ERVMEQLSHVEANRSGNEGHNQQHLPALKSAVELLPTIEINESHMNVESHCAVCKEPFEL 202
+R++ ++ N + PA K+AV+ +PTI I H+ +SHCAVCKEPF L
Sbjct: 90 DRLLLRIPSASDNPNP---------PASKAAVDSMPTILIGACHLAADSHCAVCKEPFHL 140
Query: 203 GISAREMPCKHIYHNECILPWLAIQNSCPVCRHELPCESPQINNEIS------NSNED-E 255
AREMPC HIYH+ CILPWLA+ NSCPVCRH +P + N + +S+ED
Sbjct: 141 AAEAREMPCAHIYHHNCILPWLALHNSCPVCRHRMPTDDHDSTNAAAAQAAAGSSDEDAT 200
Query: 256 NVG-LTIWRLPGGGFAVGRFSGDGGGGENRMEHPIVYTEV-DGAFNNVG 302
VG LTIWRLPGGG+AVGRF+ GG E P++YT++ DG FN G
Sbjct: 201 TVGTLTIWRLPGGGYAVGRFAAAGGTRAGERELPVLYTQMDDGGFNGGG 249
>ref|NP_915831.1| P0003D09.21 [Oryza sativa (japonica cultivar-group)]
Length = 423
Score = 141 bits (356), Expect = 3e-32
Identities = 89/263 (33%), Positives = 130/263 (48%), Gaps = 30/263 (11%)
Query: 2 SSHWCYRCNKFVRVWRLGMPI-CPDCDSGFLEDVEQSTHSANTVG--------GRRMRFP 52
++HWCY C + +RV G I CP+C+ GF++++ + S NT G R F
Sbjct: 99 ATHWCYACRRPIRV--SGQDITCPNCNDGFIQEISEIGGSLNTYGIFDPSFDERRDRSFG 156
Query: 53 MAAAMY-MIGHRNNNYNQNT---FRRHRRNNVNGGDISPFNPIIMIRGGGGSSEGTSRER 108
M AM ++ R +N F R + + G P+++ S R
Sbjct: 157 MVEAMSDLMRQRMAEMGRNRVLDFHGTRGASSHQGRQPTVRPMLIF-----GSNAPDRVS 211
Query: 109 EENNEFELFYEDGAGSGLRALPPRMSELILGSGFERVMEQLSHVEANRSGNEGHNQQHLP 168
+ E ++ G G A P S ++G E + EQL + NR G P
Sbjct: 212 SSSEEADILLRQGRRIG--ADRPNFSRFLVGPSLEALFEQLL-LHNNRQGPP-------P 261
Query: 169 ALKSAVELLPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQN 228
A +SA++ +P ++IN H+ + HC VC + FE+G AREMPCKH+YH ECI+PWL N
Sbjct: 262 APQSAIDSMPVVKINLRHLRDDPHCPVCTDKFEVGTEAREMPCKHLYHAECIIPWLVQHN 321
Query: 229 SCPVCRHELPCESPQINNEISNS 251
SCPVCRH LP S + + S+S
Sbjct: 322 SCPVCRHPLPSSSHRSGSTRSSS 344
>dbj|BAD68141.1| putative ring finger protein 126 isoform 1 [Oryza sativa (japonica
cultivar-group)]
Length = 329
Score = 141 bits (356), Expect = 3e-32
Identities = 89/263 (33%), Positives = 130/263 (48%), Gaps = 30/263 (11%)
Query: 2 SSHWCYRCNKFVRVWRLGMPI-CPDCDSGFLEDVEQSTHSANTVG--------GRRMRFP 52
++HWCY C + +RV G I CP+C+ GF++++ + S NT G R F
Sbjct: 5 ATHWCYACRRPIRV--SGQDITCPNCNDGFIQEISEIGGSLNTYGIFDPSFDERRDRSFG 62
Query: 53 MAAAMY-MIGHRNNNYNQNT---FRRHRRNNVNGGDISPFNPIIMIRGGGGSSEGTSRER 108
M AM ++ R +N F R + + G P+++ S R
Sbjct: 63 MVEAMSDLMRQRMAEMGRNRVLDFHGTRGASSHQGRQPTVRPMLIF-----GSNAPDRVS 117
Query: 109 EENNEFELFYEDGAGSGLRALPPRMSELILGSGFERVMEQLSHVEANRSGNEGHNQQHLP 168
+ E ++ G G A P S ++G E + EQL + NR G P
Sbjct: 118 SSSEEADILLRQGRRIG--ADRPNFSRFLVGPSLEALFEQLL-LHNNRQGPP-------P 167
Query: 169 ALKSAVELLPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQN 228
A +SA++ +P ++IN H+ + HC VC + FE+G AREMPCKH+YH ECI+PWL N
Sbjct: 168 APQSAIDSMPVVKINLRHLRDDPHCPVCTDKFEVGTEAREMPCKHLYHAECIIPWLVQHN 227
Query: 229 SCPVCRHELPCESPQINNEISNS 251
SCPVCRH LP S + + S+S
Sbjct: 228 SCPVCRHPLPSSSHRSGSTRSSS 250
>gb|AAM20263.1| unknown protein [Arabidopsis thaliana] gi|15028361|gb|AAK76657.1|
unknown protein [Arabidopsis thaliana]
gi|66865932|gb|AAY57600.1| RING finger family protein
[Arabidopsis thaliana] gi|42572705|ref|NP_974448.1| zinc
finger (C3HC4-type RING finger) family protein
[Arabidopsis thaliana] gi|18410530|ref|NP_567039.1| zinc
finger (C3HC4-type RING finger) family protein
[Arabidopsis thaliana]
Length = 320
Score = 129 bits (323), Expect = 2e-28
Identities = 83/258 (32%), Positives = 129/258 (49%), Gaps = 18/258 (6%)
Query: 2 SSHWCYRCNKFVRVW-RLGMPICPDCDSGFLEDVEQSTHSANTVGGRRMRFPMAAAMYMI 60
++HWC+RC + VW R +C C GF+E+++ A+ R F + A
Sbjct: 6 NTHWCHRCQR--AVWLRARDAVCSYCGGGFVEEIDIGPSRAHRDVERDPTFDLMEAFSAF 63
Query: 61 GHRNNNYNQNTFRRHRRNNVNGGDISPFNPIIMIRGGGGSSEGTSREREENNEFELFYED 120
+ + ++ R + F+ + + GG + +N+ E F +
Sbjct: 64 --MRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQAP-FRLAGGDNSSVEAFV-N 119
Query: 121 GAGSGLR-ALPPRMSELILGSGFERVMEQLSHVEANRSGNEGHNQQHLPALKSAVELLPT 179
GA G+ A + G G E ++EQLS SG H++ PA KS+++ LPT
Sbjct: 120 GAAPGIGIARGTNAGDYFFGPGLEELIEQLS------SGT--HHRGPPPAPKSSIDALPT 171
Query: 180 IEINESHM-NVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQNSCPVCRHELP 238
I+I + H+ + +SHC VCK+ FEL A++MPC HIYH++CI+PWL NSCPVCR ELP
Sbjct: 172 IKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELP 231
Query: 239 CESPQINNEISNSNEDEN 256
+ + S+ N N
Sbjct: 232 SRGSSSSTQ-SSQNRSTN 248
>gb|AAP42739.1| At2g40830 [Arabidopsis thaliana] gi|22655078|gb|AAM98130.1|
expressed protein [Arabidopsis thaliana]
gi|2623297|gb|AAB86443.1| expressed protein [Arabidopsis
thaliana] gi|3790583|gb|AAC69854.1| RING-H2 finger
protein RHC1a [Arabidopsis thaliana]
gi|7487241|pir||T00747 RING-H2 finger protein RHC1a
[imported] - Arabidopsis thaliana
gi|42571155|ref|NP_973651.1| zinc finger (C3HC4-type
RING finger) family protein [Arabidopsis thaliana]
gi|42571157|ref|NP_973652.1| zinc finger (C3HC4-type
RING finger) family protein [Arabidopsis thaliana]
gi|18405518|ref|NP_565942.1| zinc finger (C3HC4-type
RING finger) family protein [Arabidopsis thaliana]
Length = 328
Score = 128 bits (322), Expect = 3e-28
Identities = 92/307 (29%), Positives = 137/307 (43%), Gaps = 45/307 (14%)
Query: 2 SSHWCYRCNKFVRVWRLGMPICPDCDSGFLEDVEQST-------HSANTVGGRRMRFPMA 54
++HWC+RC + VR+ P+C C GF+E+++ + S V R F +
Sbjct: 6 NTHWCHRCQRAVRLHGQE-PVCFYCGGGFVEELDMAQASPFDMFRSHRGVVERDQTFDLM 64
Query: 55 AAMYMIGHRNNNYNQNTFRRHRRNNVNGGDIS-PFNPIIMIRGGGGSSEGTSREREENNE 113
A + + RN ++ R R ++ G + P ++I GG T +N
Sbjct: 65 DA-FSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTG-----DNA 118
Query: 114 FELFYEDGAGSGLRALPPRMSELILGSGFERVMEQLSHVEANRSGNEGHNQQHLPALKSA 173
E + +G G+ + G G E + EQLS R PA +SA
Sbjct: 119 VEALF-NGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPP--------PAPRSA 169
Query: 174 VELLPTIEINESHM-NVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQNSCPV 232
++ LPTI+I + H+ + +S+C VCK+ FELG A++MPC HIYH++CI+PWL NSCPV
Sbjct: 170 IDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPV 229
Query: 233 CRHELP--------------------CESPQINNEISNSNEDENVGLTIWRLPGGGFAVG 272
CR ELP S +N N NE N + W G +
Sbjct: 230 CRQELPSASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSS 289
Query: 273 RFSGDGG 279
GG
Sbjct: 290 STQNRGG 296
>gb|AAN18152.1| At3g19950/MPN9_19 [Arabidopsis thaliana] gi|20465263|gb|AAM19951.1|
AT3g19950/MPN9_19 [Arabidopsis thaliana]
gi|15231003|ref|NP_188629.1| zinc finger (C3HC4-type
RING finger) family protein [Arabidopsis thaliana]
Length = 328
Score = 124 bits (312), Expect = 4e-27
Identities = 76/266 (28%), Positives = 118/266 (43%), Gaps = 32/266 (12%)
Query: 5 WCYRCNKFVRVWRLGM--PICPDCDSGFLEDVEQSTHSAN---TVGGRRMRFPMA----- 54
+CY+CN+ V + P CP C+ GFLE+ E + + FPMA
Sbjct: 22 FCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFST 81
Query: 55 --------AAMYMIGHRNNNYNQNTFRRHRRNNVNGGDISPFNPIIMIRGGGGSSEGTSR 106
+A G + + + R+ F+P ++
Sbjct: 82 LLPLIFGSSAAAPSGMDFMSLFGPSMQPQARSTQQNPQSDAFDPFTFLQNH------LQT 135
Query: 107 EREENNEFELFYEDGAGSGLRALPPRMSELILGSGFERVMEQLSHVEANRSGNEGHNQQH 166
R FE E+ +P + G G E++++QL+ + NR G
Sbjct: 136 LRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTP------ 189
Query: 167 LPALKSAVELLPTIEINESHMNVE-SHCAVCKEPFELGISAREMPCKHIYHNECILPWLA 225
PA KSA++ LPT+++ + + E + CAVC + FE G ++MPCKH++H +C+LPWL
Sbjct: 190 -PASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLE 248
Query: 226 IQNSCPVCRHELPCESPQINNEISNS 251
+ NSCPVCR ELP + P N S
Sbjct: 249 LHNSCPVCRFELPTDDPDYENRSQGS 274
>dbj|BAB01310.1| unnamed protein product [Arabidopsis thaliana]
Length = 386
Score = 124 bits (312), Expect = 4e-27
Identities = 76/266 (28%), Positives = 118/266 (43%), Gaps = 32/266 (12%)
Query: 5 WCYRCNKFVRVWRLGM--PICPDCDSGFLEDVEQSTHSAN---TVGGRRMRFPMA----- 54
+CY+CN+ V + P CP C+ GFLE+ E + + FPMA
Sbjct: 80 FCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFST 139
Query: 55 --------AAMYMIGHRNNNYNQNTFRRHRRNNVNGGDISPFNPIIMIRGGGGSSEGTSR 106
+A G + + + R+ F+P ++
Sbjct: 140 LLPLIFGSSAAAPSGMDFMSLFGPSMQPQARSTQQNPQSDAFDPFTFLQNH------LQT 193
Query: 107 EREENNEFELFYEDGAGSGLRALPPRMSELILGSGFERVMEQLSHVEANRSGNEGHNQQH 166
R FE E+ +P + G G E++++QL+ + NR G
Sbjct: 194 LRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTP------ 247
Query: 167 LPALKSAVELLPTIEINESHMNVE-SHCAVCKEPFELGISAREMPCKHIYHNECILPWLA 225
PA KSA++ LPT+++ + + E + CAVC + FE G ++MPCKH++H +C+LPWL
Sbjct: 248 -PASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLE 306
Query: 226 IQNSCPVCRHELPCESPQINNEISNS 251
+ NSCPVCR ELP + P N S
Sbjct: 307 LHNSCPVCRFELPTDDPDYENRSQGS 332
>gb|AAP54362.1| putative zinc finger protein [Oryza sativa (japonica
cultivar-group)] gi|37535546|ref|NP_922075.1| putative
zinc finger protein [Oryza sativa (japonica
cultivar-group)] gi|18087865|gb|AAL59019.1| putative
zinc finger protein [Oryza sativa]
Length = 370
Score = 110 bits (276), Expect = 6e-23
Identities = 90/341 (26%), Positives = 139/341 (40%), Gaps = 70/341 (20%)
Query: 4 HWCYRCNKFVRV----WRLGMPICPDCDSGFLEDVEQSTHSANTVGGRRMRFPMAAAMYM 59
++CY+CN+ V + G CP+C F+E+V N + FP A M
Sbjct: 16 YFCYQCNRTVLLPASAAAAGALSCPECRGDFIEEV-------NVPAPAIIPFPFAFPPMM 68
Query: 60 IGHRNNNYNQNTFRRHRRNNVNGGDISPFNPIIMIRG---------------GGGSSEGT 104
+ + +++ + SP + + G S+ GT
Sbjct: 69 PTATSASAAAAAAASPTQSSSSSAATSPSSDLSAFLNSMLGPLNLRTDERMPGTTSAAGT 128
Query: 105 SREREENNEFEL--FYE-----------------DGAGSGL-----RALPPRMSELILGS 140
+ +E + F+ F++ D A GL R + +G
Sbjct: 129 ATPEDEPDGFDAVTFFQNYLQNLMDGGANIQVLLDDASVGLAPGIGRVGGASFGDYFVGP 188
Query: 141 GFERVMEQLSHVEANRSGNEGHNQQHLPALKSAVELLPTIEINESHMNVE--SHCAVCKE 198
G E+++EQL+ + NR G PA KSA+ LP + + ++ + + CAVCKE
Sbjct: 189 GLEQLIEQLTENDPNRYGTP-------PAAKSALSTLPDVVVTDAMVAAADGAECAVCKE 241
Query: 199 PFELGISAREMPCKHIYHNECILPWLAIQNSCPVCRHELPCESPQINNEISNSNEDENVG 258
F G A++MPCKHIYH +CI+PWL + NSCP+CR ELP + P ++ +
Sbjct: 242 DFSPGEGAKQMPCKHIYHADCIMPWLDLHNSCPICRFELPTDDPDYEGRKKSNPQ----- 296
Query: 259 LTIWRLPGGGFAVGRFSGDGGGGENRMEHPIVYTEVDGAFN 299
P G G SG E R E V+ FN
Sbjct: 297 ------PTAGVDAGAASGSSTAAEEREESGESARLVERRFN 331
>gb|AAT77283.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 323
Score = 107 bits (266), Expect = 8e-22
Identities = 78/288 (27%), Positives = 123/288 (42%), Gaps = 63/288 (21%)
Query: 1 MSSHWCYRCNKFVRVWRLGMPICPDCDSGFLEDVEQSTHSANTVGGRRMRFPMAAAMYMI 60
++ +WC+ C + + + CP C GF+E++ T R P + I
Sbjct: 6 ITRYWCHECEQAIEEAMVDEIKCPSCGGGFVEEMTDEEIERLT---NRQPEPGFSQWNPI 62
Query: 61 GHRNNNYNQNT------------FRRHRRNNV-------------------NGGDISPFN 89
H + + RRHRR + + I+ FN
Sbjct: 63 EHPGETMDSDDEDNDLGREFEGFIRRHRRASTLRRVLDSIHDDLADDQERDSSILINAFN 122
Query: 90 PIIMIRGGG-GSSEGTSREREENNEFELFYEDGAGSGLRALPPRMSELILGSGFERVMEQ 148
+ ++G EG + N+ DG + E +LG+G +++
Sbjct: 123 QALALQGSVLDPDEGQGDQGGSTND------DGL----------LEEYVLGAGLSLLLQH 166
Query: 149 LSHVEANRSGNEGHNQQHLPALKSAVELLPTIEINESHMNVESHCAVCKEPFELGISARE 208
L+ + +R+G PA K AVE LPT++I E C+VC + E+G A++
Sbjct: 167 LAESDPSRNGTP-------PAKKEAVEALPTVKIEEV-----VSCSVCLDDLEVGSQAKQ 214
Query: 209 MPCKHIYHNECILPWLAIQNSCPVCRHELPCESPQINNEISNSNEDEN 256
MPC+H +H+ CILPWL + +SCPVCR ELP E + NE SN E+
Sbjct: 215 MPCEHKFHSSCILPWLELHSSCPVCRFELPSEETKDLNEPSNIGRVED 262
>dbj|BAD67937.1| putative ring finger protein 126 isoform 1 [Oryza sativa (japonica
cultivar-group)] gi|55296657|dbj|BAD69377.1| putative
ring finger protein 126 isoform 1 [Oryza sativa
(japonica cultivar-group)]
Length = 338
Score = 105 bits (263), Expect = 2e-21
Identities = 47/112 (41%), Positives = 72/112 (63%), Gaps = 9/112 (8%)
Query: 133 MSELILGSGFERVMEQLSHVEANRSGNEGHNQQHLPALKSAVELLPTIEINESHMNVE-- 190
+ + +GSG E++++QL+ + NR G PA KSAV LP + ++ M +
Sbjct: 147 LGDYFVGSGLEQLIQQLAENDPNRYGTP-------PAAKSAVAALPDVAVSADMMAADGG 199
Query: 191 SHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQNSCPVCRHELPCESP 242
+ CAVC + F LG +A+++PCKH++H +CILPWL + +SCPVCR ELP + P
Sbjct: 200 AQCAVCMDDFHLGAAAKQLPCKHVFHKDCILPWLDLHSSCPVCRFELPTDDP 251
>ref|XP_467971.1| zinc finger -like [Oryza sativa (japonica cultivar-group)]
gi|46806079|dbj|BAD17327.1| zinc finger -like [Oryza
sativa (japonica cultivar-group)]
gi|46805440|dbj|BAD16922.1| zinc finger -like [Oryza
sativa (japonica cultivar-group)]
Length = 340
Score = 105 bits (262), Expect = 2e-21
Identities = 52/117 (44%), Positives = 74/117 (62%), Gaps = 16/117 (13%)
Query: 168 PALKSAVELLPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQ 227
PA SA++ LPT++I +H++ S C VCKE FELG +AR+MPCKH+YH++CI+PWL +
Sbjct: 174 PAPSSAIDSLPTVQITGAHLSDGSQCPVCKEDFELGEAARQMPCKHVYHSDCIVPWLRLH 233
Query: 228 NSCPVCRHELPCESPQINNEISNSNEDENVGLTIWRLPGGGFAVGRFSGDGGGGENR 284
NSCPVCR++L +++ + SN + R G G G GGGG+ R
Sbjct: 234 NSCPVCRYQL------LSSAAAGSNANS-------RARRGSANNG---GGGGGGDGR 274
>dbj|BAD35703.1| zinc finger-like [Oryza sativa (japonica cultivar-group)]
Length = 331
Score = 103 bits (257), Expect = 9e-21
Identities = 79/252 (31%), Positives = 114/252 (44%), Gaps = 55/252 (21%)
Query: 4 HWCYRCNKFVRVW---RLGMPICPDCDSGFLEDVEQSTHSANTVGGRRMRFPMAAAMYMI 60
+WCY C + +RV CP C FL +++ + P A
Sbjct: 20 YWCYVCRRALRVVVPSATSDVYCPRCFGRFLHEIDLPVPRVS---------PPA------ 64
Query: 61 GHRNNNYNQNTFRRHRRNNVNGGDISPFNPIIMIRGGGGSSEG----TSREREENNEFEL 116
+ + Q F + P ++ GGGG G T+R R +
Sbjct: 65 ---EDQFFQPPFLPYD---------GPRRWVLYTGGGGGGDYGGADVTARRRRLPSPPPA 112
Query: 117 ---FYEDGAGSG-----LRALPPRMSELILGSGFERVMEQLSHVEANRSGNEGHNQQHLP 168
+DGAG G A+ P E G +++ L+ + +R G P
Sbjct: 113 PGTRRQDGAGDGDPPPPAPAIDP--GEYFAGPDLNALIDALT--QDDRPGPP-------P 161
Query: 169 ALKSAVELLPTIEINESHMNVE--SHCAVCKEPFELGISAREMPCKHIYHNECILPWLAI 226
A +SA+E LPT+ I+ H+ + S C VCKE FELG +ARE+PCKH YH++CI+PWL +
Sbjct: 162 APESAIESLPTVHISPDHLPADGGSECPVCKEEFELGEAARELPCKHAYHSDCIVPWLRL 221
Query: 227 QNSCPVCRHELP 238
NSCPVCR E+P
Sbjct: 222 HNSCPVCRQEVP 233
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 770,745,378
Number of Sequences: 2540612
Number of extensions: 37220516
Number of successful extensions: 174608
Number of sequences better than 10.0: 2017
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 654
Number of HSP's that attempted gapping in prelim test: 172114
Number of HSP's gapped (non-prelim): 2550
length of query: 391
length of database: 863,360,394
effective HSP length: 130
effective length of query: 261
effective length of database: 533,080,834
effective search space: 139134097674
effective search space used: 139134097674
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)
Medicago: description of AC124953.18