BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124217.9 + phase: 0 /pseudo
         (145 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF79637.1| F5O11.18 [Arabidopsis thaliana] gi|25373001|pir||...    34  0.64
gb|AAH78291.1| Transmembrane 9 superfamily member 1 [Danio rerio...    34  0.84
gb|AAL08832.1| unknown [Cowdria ruminantium]                           32  3.2
emb|CAI28181.1| Hypothetical protein [Ehrlichia ruminantium str....    31  7.1
ref|YP_180565.1| putative integral membrane protein [Ehrlichia r...    30  9.3

>gb|AAF79637.1| F5O11.18 [Arabidopsis thaliana] gi|25373001|pir||H86258 protein
           F5O11.18 [imported] - Arabidopsis thaliana
          Length = 110

 Score = 34.3 bits (77), Expect = 0.64
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 57  QLSFSHLVCSHFGGCLSVCVMRLLLSKGACLSSSLTCLRRTYRY-LWRTFLFWVSPLIIV 115
           Q+ F  +VC  F G +S  V+ LL      L + +  L   Y+Y LW  F+    PL+  
Sbjct: 38  QIKFD-IVCELFIGSISFLVLMLLFGMVLILQNGVLFLYFAYKYQLWLRFILLFDPLVFF 96

Query: 116 YI 117
           Y+
Sbjct: 97  YV 98


>gb|AAH78291.1| Transmembrane 9 superfamily member 1 [Danio rerio]
           gi|57525905|ref|NP_001003550.1| transmembrane 9
           superfamily member 1 [Danio rerio]
          Length = 609

 Score = 33.9 bits (76), Expect = 0.84
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 74  VCVMRLLLSKGACLSSSLTCL---RRTYRYLWRTFLFWVSPLIIVYI 117
           +CV  +LLS GAC+S +LT        YR+ WR+ L   S  I +++
Sbjct: 505 LCVFAILLSVGACISVALTYFLLSGEDYRWWWRSVLSTGSTGIFIFV 551


>gb|AAL08832.1| unknown [Cowdria ruminantium]
          Length = 741

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 59  SFSHLVCSHFGGCLSVCVMRLLLSKGACLSSSLTCLRRTYRYLWRTFLFWVSP 111
           ++  +  + +  CLS+C  + L+S  A LS  + C  RT+  L  T  F V P
Sbjct: 24  AYKDIFYAMYQDCLSICSPKYLMS--ASLSQDINCTMRTFENLQTTSTFQVIP 74


>emb|CAI28181.1| Hypothetical protein [Ehrlichia ruminantium str. Gardel]
           gi|58617456|ref|YP_196655.1| hypothetical protein
           ERGA_CDS_07290 [Ehrlichia ruminantium str. Gardel]
          Length = 989

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 17/53 (32%), Positives = 26/53 (48%), Gaps = 2/53 (3%)

Query: 59  SFSHLVCSHFGGCLSVCVMRLLLSKGACLSSSLTCLRRTYRYLWRTFLFWVSP 111
           ++  +  + +  CLS+C    L+S  A LS  + C  RT+  L  T  F V P
Sbjct: 274 AYKDIFYAMYQDCLSICNPEYLMS--ASLSQDINCTMRTFENLQTTSTFQVIP 324


>ref|YP_180565.1| putative integral membrane protein [Ehrlichia ruminantium str.
           Welgevonden] gi|58418027|emb|CAI27231.1| Hypothetical
           protein [Ehrlichia ruminantium str. Welgevonden]
           gi|57161508|emb|CAH58434.1| putative integral membrane
           protein [Ehrlichia ruminantium str. Welgevonden]
           gi|58579401|ref|YP_197613.1| hypothetical protein
           ERWE_CDS_07370 [Ehrlichia ruminantium str. Welgevonden]
          Length = 987

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 16/53 (30%), Positives = 26/53 (48%), Gaps = 2/53 (3%)

Query: 59  SFSHLVCSHFGGCLSVCVMRLLLSKGACLSSSLTCLRRTYRYLWRTFLFWVSP 111
           ++  +  + +  CLS+C    L+S  A LS  + C  RT+  L  T  F + P
Sbjct: 274 AYQDIFYAMYQDCLSICNPEYLMS--ASLSQDINCTMRTFENLQTTSTFQIIP 324


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.349    0.155    0.577 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 237,203,255
Number of Sequences: 2540612
Number of extensions: 8253531
Number of successful extensions: 24244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 24243
Number of HSP's gapped (non-prelim): 5
length of query: 145
length of database: 863,360,394
effective HSP length: 121
effective length of query: 24
effective length of database: 555,946,342
effective search space: 13342712208
effective search space used: 13342712208
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 67 (30.4 bits)