BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124215.1 + phase: 0
(45 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB39155.1| SCARECROW [Pisum sativum] 100 1e-20
emb|CAI30893.1| SCARECROW [Cucumis sativus] gi|56605382|emb|CAI3... 80 1e-14
gb|AAG13663.1| SCARECROW [Zea mays] 70 2e-11
dbj|BAD22576.1| SCARECROW [Oryza sativa (japonica cultivar-group)] 70 2e-11
gb|AAB06318.1| SCARECROW [Arabidopsis thaliana] gi|11291689|pir|... 64 8e-10
emb|CAB70996.1| SCARECROW1 [Arabidopsis thaliana] gi|21281201|gb... 64 8e-10
ref|NP_911255.1| putative SCARECROW protein [Oryza sativa (japon... 57 1e-07
ref|XP_478748.1| SCARECROW protein-like protein [Oryza sativa (j... 57 1e-07
gb|AAR15507.1| scarecrow-like 23 [Zea mays] 56 3e-07
dbj|BAB08425.1| SCARECROW gene regulator-like protein [Arabidops... 55 4e-07
gb|AAP13049.1| MONOCULM 1 [Oryza sativa (japonica cultivar-group... 38 0.085
dbj|BAD35485.1| Protein MONOCULM 1 [Oryza sativa (japonica culti... 38 0.085
gb|AAG51190.1| scarecrow-like protein [Arabidopsis thaliana] gi|... 37 0.11
gb|AAN41283.1| putative scarecrow protein [Arabidopsis thaliana]... 37 0.11
gb|AAK59436.2| putative scarecrow protein [Arabidopsis thaliana] 37 0.11
gb|AAD24405.1| scarecrow-like 5 [Arabidopsis thaliana] gi|113588... 37 0.11
gb|AAK62666.1| F17J6.12/F17J6.12 [Arabidopsis thaliana] 37 0.11
gb|AAX33298.1| DELLA protein [Brassica rapa] 36 0.25
gb|AAQ96164.1| gibberellic acid insensitive phloem [Cucurbita ma... 35 0.55
gb|AAQ65090.1| At2g01570/F2I9.19 [Arabidopsis thaliana] gi|37859... 35 0.72
>dbj|BAB39155.1| SCARECROW [Pisum sativum]
Length = 819
Score = 100 bits (248), Expect = 1e-20
Identities = 43/45 (95%), Positives = 44/45 (97%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNIIPHHN 45
MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPP+HTN IIPHHN
Sbjct: 775 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPYHTNTIIPHHN 819
>emb|CAI30893.1| SCARECROW [Cucumis sativus] gi|56605382|emb|CAI30892.1| SCARECROW
[Cucumis sativus]
Length = 858
Score = 80.5 bits (197), Expect = 1e-14
Identities = 38/55 (69%), Positives = 41/55 (74%), Gaps = 11/55 (20%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFH-----------TNNIIPHH 44
MFPS+GYTLVEDNG LKLGWKDLCLLTASAW+PPFH TNN IP +
Sbjct: 804 MFPSDGYTLVEDNGTLKLGWKDLCLLTASAWKPPFHHHAAAAAAAAVTNNHIPRY 858
>gb|AAG13663.1| SCARECROW [Zea mays]
Length = 668
Score = 70.1 bits (170), Expect = 2e-11
Identities = 30/33 (90%), Positives = 32/33 (96%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
MFPS+GYTLVE+NG LKLGWKDLCLLTASAWRP
Sbjct: 629 MFPSDGYTLVEENGALKLGWKDLCLLTASAWRP 661
>dbj|BAD22576.1| SCARECROW [Oryza sativa (japonica cultivar-group)]
Length = 660
Score = 69.7 bits (169), Expect = 2e-11
Identities = 29/33 (87%), Positives = 32/33 (96%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
MFPS+GYTL+E+NG LKLGWKDLCLLTASAWRP
Sbjct: 622 MFPSDGYTLIEENGALKLGWKDLCLLTASAWRP 654
>gb|AAB06318.1| SCARECROW [Arabidopsis thaliana] gi|11291689|pir||T51244 SCARECROW
protein [imported] - Arabidopsis thaliana
Length = 653
Score = 64.3 bits (155), Expect = 8e-10
Identities = 28/33 (84%), Positives = 30/33 (90%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
MFPS+GYTLV+DNG LKLGWKDL LLTASAW P
Sbjct: 619 MFPSDGYTLVDDNGTLKLGWKDLSLLTASAWTP 651
>emb|CAB70996.1| SCARECROW1 [Arabidopsis thaliana] gi|21281201|gb|AAM45039.1|
putative SCARECROW1 protein [Arabidopsis thaliana]
gi|19423878|gb|AAL87315.1| putative SCARECROW1 protein
[Arabidopsis thaliana] gi|15810553|gb|AAL07164.1|
putative SCARECROW1 protein [Arabidopsis thaliana]
gi|15232451|ref|NP_190990.1| scarecrow transcription
factor, putative [Arabidopsis thaliana]
gi|11291687|pir||T47581 SCARECROW1 - Arabidopsis
thaliana
Length = 653
Score = 64.3 bits (155), Expect = 8e-10
Identities = 28/33 (84%), Positives = 30/33 (90%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
MFPS+GYTLV+DNG LKLGWKDL LLTASAW P
Sbjct: 619 MFPSDGYTLVDDNGTLKLGWKDLSLLTASAWTP 651
>ref|NP_911255.1| putative SCARECROW protein [Oryza sativa (japonica cultivar-group)]
Length = 441
Score = 57.0 bits (136), Expect = 1e-07
Identities = 24/33 (72%), Positives = 29/33 (87%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
M+P +GYTLVE++G LKLGWKDL LLTAS+W P
Sbjct: 387 MYPWKGYTLVEEDGCLKLGWKDLSLLTASSWEP 419
>ref|XP_478748.1| SCARECROW protein-like protein [Oryza sativa (japonica
cultivar-group)] gi|34393287|dbj|BAC83201.1| SCARECROW
protein-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 306
Score = 57.0 bits (136), Expect = 1e-07
Identities = 24/33 (72%), Positives = 29/33 (87%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
M+P +GYTLVE++G LKLGWKDL LLTAS+W P
Sbjct: 252 MYPWKGYTLVEEDGCLKLGWKDLSLLTASSWEP 284
>gb|AAR15507.1| scarecrow-like 23 [Zea mays]
Length = 313
Score = 55.8 bits (133), Expect = 3e-07
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
M+P +GYTLVE++ LKLGWKDL LLTASAW P
Sbjct: 270 MYPWKGYTLVEEDACLKLGWKDLSLLTASAWEP 302
>dbj|BAB08425.1| SCARECROW gene regulator-like protein [Arabidopsis thaliana]
gi|15238234|ref|NP_199007.1| scarecrow transcription
factor family protein [Arabidopsis thaliana]
Length = 405
Score = 55.5 bits (132), Expect = 4e-07
Identities = 24/32 (75%), Positives = 27/32 (84%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 32
M P GYTLVE+NG L+LGWKDL LLTASAW+
Sbjct: 369 MLPWNGYTLVEENGTLRLGWKDLSLLTASAWK 400
>gb|AAP13049.1| MONOCULM 1 [Oryza sativa (japonica cultivar-group)]
gi|47605766|sp|Q84MM9|MOC_ORYSA Protein MONOCULM 1
Length = 441
Score = 37.7 bits (86), Expect = 0.085
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 2 FPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
+PSEGY + E G LGW+ LL+ SAW+P
Sbjct: 407 YPSEGYLVQEARGACFLGWQTRPLLSVSAWQP 438
>dbj|BAD35485.1| Protein MONOCULM 1 [Oryza sativa (japonica cultivar-group)]
Length = 507
Score = 37.7 bits (86), Expect = 0.085
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 2 FPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
+PSEGY + E G LGW+ LL+ SAW+P
Sbjct: 473 YPSEGYLVQEARGACFLGWQTRPLLSVSAWQP 504
>gb|AAG51190.1| scarecrow-like protein [Arabidopsis thaliana]
gi|25405382|pir||E96542 scarecrow-like protein
[imported] - Arabidopsis thaliana
gi|9454552|gb|AAF87875.1| Putative transcription factor
[Arabidopsis thaliana]
Length = 526
Score = 37.4 bits (85), Expect = 0.11
Identities = 17/29 (58%), Positives = 21/29 (71%)
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
SE YTL E +G L LGWK+ L+T+ AWR
Sbjct: 498 SEKYTLEERDGALYLGWKNQPLITSCAWR 526
>gb|AAN41283.1| putative scarecrow protein [Arabidopsis thaliana]
gi|30694805|ref|NP_175475.2| scarecrow-like
transcription factor 5 (SCL5) [Arabidopsis thaliana]
Length = 597
Score = 37.4 bits (85), Expect = 0.11
Identities = 17/29 (58%), Positives = 21/29 (71%)
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
SE YTL E +G L LGWK+ L+T+ AWR
Sbjct: 569 SEKYTLEERDGALYLGWKNQPLITSCAWR 597
>gb|AAK59436.2| putative scarecrow protein [Arabidopsis thaliana]
Length = 587
Score = 37.4 bits (85), Expect = 0.11
Identities = 17/29 (58%), Positives = 21/29 (71%)
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
SE YTL E +G L LGWK+ L+T+ AWR
Sbjct: 559 SEKYTLEERDGALYLGWKNQPLITSCAWR 587
>gb|AAD24405.1| scarecrow-like 5 [Arabidopsis thaliana] gi|11358827|pir||T51236
scarecrow-like protein 5 [imported] - Arabidopsis
thaliana (fragment)
Length = 306
Score = 37.4 bits (85), Expect = 0.11
Identities = 17/29 (58%), Positives = 21/29 (71%)
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
SE YTL E +G L LGWK+ L+T+ AWR
Sbjct: 278 SEKYTLEERDGALYLGWKNQPLITSCAWR 306
>gb|AAK62666.1| F17J6.12/F17J6.12 [Arabidopsis thaliana]
Length = 526
Score = 37.4 bits (85), Expect = 0.11
Identities = 17/29 (58%), Positives = 21/29 (71%)
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
SE YTL E +G L LGWK+ L+T+ AWR
Sbjct: 498 SEKYTLEERDGALYLGWKNQPLITSCAWR 526
>gb|AAX33298.1| DELLA protein [Brassica rapa]
Length = 579
Score = 36.2 bits (82), Expect = 0.25
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWR 32
EGY + E+NG L LGW L+T SAW+
Sbjct: 547 EGYRVEENNGCLMLGWHTRPLITTSAWK 574
>gb|AAQ96164.1| gibberellic acid insensitive phloem [Cucurbita maxima]
Length = 579
Score = 35.0 bits (79), Expect = 0.55
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNIIPH 43
EGY + E+ G L LGW L+ SAW+P N ++ H
Sbjct: 543 EGYRVEENEGSLMLGWHTRPLIATSAWKP--GNNPVVAH 579
>gb|AAQ65090.1| At2g01570/F2I9.19 [Arabidopsis thaliana] gi|3785986|gb|AAC67333.1|
putative RGA1, giberellin repsonse modulation protein
[Arabidopsis thaliana] gi|15809786|gb|AAL06821.1|
At2g01570/F2I9.19 [Arabidopsis thaliana]
gi|15226311|ref|NP_178266.1| gibberellin response
modulator (RGA1) / gibberellin-responsive modulator
[Arabidopsis thaliana] gi|25366587|pir||D84426
hypothetical protein At2g01570 [imported] - Arabidopsis
thaliana
Length = 587
Score = 34.7 bits (78), Expect = 0.72
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWR 32
+GY + E NG L LGW L+T SAW+
Sbjct: 554 QGYRVEESNGCLMLGWHTRPLITTSAWK 581
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.141 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,217,805
Number of Sequences: 2540612
Number of extensions: 2472814
Number of successful extensions: 3597
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3541
Number of HSP's gapped (non-prelim): 60
length of query: 45
length of database: 863,360,394
effective HSP length: 21
effective length of query: 24
effective length of database: 810,007,542
effective search space: 19440181008
effective search space used: 19440181008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)
Medicago: description of AC124215.1