BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124214.11 + phase: 0 /pseudo
(240 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC32828.1| symbiotic ammonium transporter; nodulin [Glycine ... 96 1e-18
gb|AAM10937.1| putative bHLH transcription factor [Arabidopsis t... 66 1e-09
ref|NP_195498.3| basic helix-loop-helix (bHLH) family protein [A... 66 1e-09
emb|CAB80450.1| putative protein [Arabidopsis thaliana] gi|44907... 65 2e-09
gb|AAM15235.1| putative bHLH transcription factor [Arabidopsis t... 63 6e-09
gb|AAM15234.1| putative bHLH transcription factor [Arabidopsis t... 63 6e-09
gb|AAD11428.1| transporter homolog [Mesembryanthemum crystallinum] 62 2e-08
gb|AAM10936.1| putative bHLH transcription factor [Arabidopsis t... 61 2e-08
gb|AAC63588.1| putative bHLH transcription factor [Arabidopsis t... 61 2e-08
ref|NP_850031.1| basic helix-loop-helix (bHLH) family protein [A... 61 2e-08
dbj|BAD44011.1| putative bHLH transcription factor (bHLH020) [Ar... 61 2e-08
gb|AAM10935.1| putative bHLH transcription factor [Arabidopsis t... 60 7e-08
ref|NP_179861.2| basic helix-loop-helix (bHLH) family protein [A... 60 7e-08
gb|AAT77090.1| putative transcription factor [Oryza sativa (japo... 59 9e-08
gb|AAM10934.1| putative bHLH transcription factor [Arabidopsis t... 59 1e-07
ref|XP_469225.1| putative ammonium transporter [Oryza sativa (ja... 47 4e-04
gb|AAP51779.1| putative bHLH transcription factor [Oryza sativa ... 45 0.001
gb|AAT85298.1| hypothetical protein [Oryza sativa (japonica cult... 44 0.003
gb|AAP03375.1| putative ammonium transporter [Oryza sativa (japo... 44 0.004
ref|XP_470603.1| Putative bHLH transcription factor [Oryza sativ... 44 0.005
>gb|AAC32828.1| symbiotic ammonium transporter; nodulin [Glycine max]
gi|7488716|pir||T06329 symbiotic ammonium transport
protein SAT1 - soybean
Length = 347
Score = 95.5 bits (236), Expect = 1e-18
Identities = 48/65 (73%), Positives = 55/65 (83%)
Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
LPEIEARF +RNVLIR+HCEK KGV+EKTI +IEKL+LKV NSS +TFGS LDITIIAQ
Sbjct: 264 LPEIEARFWERNVLIRIHCEKNKGVIEKTISEIEKLHLKVINSSALTFGSFILDITIIAQ 323
Query: 228 PTLSF 232
+ F
Sbjct: 324 MDMEF 328
>gb|AAM10937.1| putative bHLH transcription factor [Arabidopsis thaliana]
Length = 304
Score = 65.9 bits (159), Expect = 1e-09
Identities = 35/65 (53%), Positives = 46/65 (69%), Gaps = 1/65 (1%)
Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
LPEIE RF D +VLI++ CEK KG + K + +IEKL++ +TNSS + FG LDITIIA+
Sbjct: 222 LPEIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILITNSSVLNFGP-TLDITIIAK 280
Query: 228 PTLSF 232
F
Sbjct: 281 KESDF 285
>ref|NP_195498.3| basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana]
Length = 328
Score = 65.9 bits (159), Expect = 1e-09
Identities = 35/65 (53%), Positives = 46/65 (69%), Gaps = 1/65 (1%)
Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
LPEIE RF D +VLI++ CEK KG + K + +IEKL++ +TNSS + FG LDITIIA+
Sbjct: 246 LPEIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILITNSSVLNFGP-TLDITIIAK 304
Query: 228 PTLSF 232
F
Sbjct: 305 KESDF 309
>emb|CAB80450.1| putative protein [Arabidopsis thaliana] gi|4490730|emb|CAB38933.1|
putative protein [Arabidopsis thaliana]
gi|7487499|pir||T06032 hypothetical protein T28I19.130 -
Arabidopsis thaliana
Length = 314
Score = 65.1 bits (157), Expect = 2e-09
Identities = 34/60 (56%), Positives = 45/60 (74%), Gaps = 1/60 (1%)
Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
LPEIE RF D +VLI++ CEK KG + K + +IEKL++ +TNSS + FG LDITIIA+
Sbjct: 222 LPEIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILITNSSVLNFGP-TLDITIIAK 280
>gb|AAM15235.1| putative bHLH transcription factor [Arabidopsis thaliana]
gi|3738090|gb|AAC63587.1| putative bHLH transcription
factor [Arabidopsis thaliana] gi|25412136|pir||E84616
probable bHLH transcription factor [imported] -
Arabidopsis thaliana
Length = 284
Score = 63.2 bits (152), Expect = 6e-09
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
LPEIEA+ ++LIR+ CEK KG + ++ IE L++ NS + FG LDIT++AQ
Sbjct: 214 LPEIEAKISQNDILIRILCEKSKGCMINILNTIENFQLRIENSIVLPFGDSTLDITVLAQ 273
Query: 228 PTLSFYVF 235
++ Y++
Sbjct: 274 VIINNYIY 281
>gb|AAM15234.1| putative bHLH transcription factor [Arabidopsis thaliana]
gi|3738089|gb|AAC63586.1| putative bHLH transcription
factor [Arabidopsis thaliana] gi|25412135|pir||D84616
probable bHLH transcription factor [imported] -
Arabidopsis thaliana
Length = 288
Score = 63.2 bits (152), Expect = 6e-09
Identities = 34/67 (50%), Positives = 46/67 (67%), Gaps = 1/67 (1%)
Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
LPEIE R ++VLI++ CEK KG V K + +IEKL L +TNS+ + FG DI+IIAQ
Sbjct: 223 LPEIEVRVSGKDVLIKILCEKQKGNVIKIMGEIEKLGLSITNSNVLPFGP-TFDISIIAQ 281
Query: 228 PTLSFYV 234
T+ F +
Sbjct: 282 VTIYFLI 288
>gb|AAD11428.1| transporter homolog [Mesembryanthemum crystallinum]
Length = 300
Score = 61.6 bits (148), Expect = 2e-08
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
L EIEA C+ NVLIR+H +K + +V K +++IE L+L N + + FG A+DITI+AQ
Sbjct: 215 LLEIEAGACNNNVLIRIHAQKDQDLVRKVLNEIENLHLTTLNFNTIPFGGYAMDITIVAQ 274
Query: 228 P------TLSFYVFHLR 238
T+ V HLR
Sbjct: 275 MDDDFELTIKDVVMHLR 291
>gb|AAM10936.1| putative bHLH transcription factor [Arabidopsis thaliana]
Length = 320
Score = 61.2 bits (147), Expect = 2e-08
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
+P IEAR DR++LIRVHCEK KG + K + +EK L+V NS + FG+ L ITI+ +
Sbjct: 239 MPMIEARVSDRDLLIRVHCEKNKGCMIKILSSLEKFRLEVVNSFTLPFGNSTLVITILTK 298
>gb|AAC63588.1| putative bHLH transcription factor [Arabidopsis thaliana]
gi|25412138|pir||F84616 probable bHLH transcription
factor [imported] - Arabidopsis thaliana
Length = 322
Score = 61.2 bits (147), Expect = 2e-08
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
+P IEAR DR++LIRVHCEK KG + K + +EK L+V NS + FG+ L ITI+ +
Sbjct: 239 MPMIEARVSDRDLLIRVHCEKNKGCMIKILSSLEKFRLEVVNSFTLPFGNSTLVITILTK 298
>ref|NP_850031.1| basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana]
Length = 314
Score = 61.2 bits (147), Expect = 2e-08
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
+P IEAR DR++LIRVHCEK KG + K + +EK L+V NS + FG+ L ITI+ +
Sbjct: 233 MPMIEARVSDRDLLIRVHCEKNKGCMIKILSSLEKFRLEVVNSFTLPFGNSTLVITILTK 292
>dbj|BAD44011.1| putative bHLH transcription factor (bHLH020) [Arabidopsis thaliana]
Length = 320
Score = 61.2 bits (147), Expect = 2e-08
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
+P IEAR DR++LIRVHCEK KG + K + +EK L+V NS + FG+ L ITI+ +
Sbjct: 239 MPMIEARVSDRDLLIRVHCEKNKGCMIKILSSLEKFRLEVVNSFTLPFGNSTLVITILTK 298
>gb|AAM10935.1| putative bHLH transcription factor [Arabidopsis thaliana]
Length = 295
Score = 59.7 bits (143), Expect = 7e-08
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
LPEIEA+ ++LIR+ CEK KG + ++ IE L++ NS + FG LDIT++AQ
Sbjct: 214 LPEIEAKISQNDILIRILCEKSKGCMINILNTIENFQLRIENSIVLPFGDSTLDITVLAQ 273
Query: 228 PTLSF 232
F
Sbjct: 274 MDKDF 278
>ref|NP_179861.2| basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana]
Length = 295
Score = 59.7 bits (143), Expect = 7e-08
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
LPEIEA+ ++LIR+ CEK KG + ++ IE L++ NS + FG LDIT++AQ
Sbjct: 214 LPEIEAKISQNDILIRILCEKSKGCMINILNTIENFQLRIENSIVLPFGDSTLDITVLAQ 273
Query: 228 PTLSF 232
F
Sbjct: 274 MDKDF 278
>gb|AAT77090.1| putative transcription factor [Oryza sativa (japonica
cultivar-group)] gi|41469283|gb|AAS07165.1| putative
symbiotic ammonium transport protein [Oryza sativa
(japonica cultivar-group)]
Length = 359
Score = 59.3 bits (142), Expect = 9e-08
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIA 226
LPEIEAR +R VL+++HCE KG + + ++E + L + N++ + F S +LDITI+A
Sbjct: 276 LPEIEARVSERTVLVKIHCENRKGALITALSEVETIGLTIMNTNVLPFTSSSLDITIMA 334
>gb|AAM10934.1| putative bHLH transcription factor [Arabidopsis thaliana]
gi|30681807|ref|NP_179860.2| basic helix-loop-helix
(bHLH) family protein [Arabidopsis thaliana]
Length = 304
Score = 58.9 bits (141), Expect = 1e-07
Identities = 32/60 (53%), Positives = 42/60 (69%), Gaps = 1/60 (1%)
Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
LPEIE R ++VLI++ CEK KG V K + +IEKL L +TNS+ + FG DI+IIAQ
Sbjct: 223 LPEIEVRVSGKDVLIKILCEKQKGNVIKIMGEIEKLGLSITNSNVLPFGP-TFDISIIAQ 281
>ref|XP_469225.1| putative ammonium transporter [Oryza sativa (japonica
cultivar-group)] gi|29788848|gb|AAP03394.1| putative
ammonium transporter [Oryza sativa (japonica
cultivar-group)]
Length = 353
Score = 47.4 bits (111), Expect = 4e-04
Identities = 24/61 (39%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 168 LPEIEARFCDRNVLIRVHCEKI-KGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIA 226
LPEIEA+ NV++R+H E KG + + + +E L+L +T+++ M F +C ITI+A
Sbjct: 292 LPEIEAKISHGNVMVRIHGENNGKGSLVRLLAAVEGLHLGITHTNVMPFSACTAIITIMA 351
Query: 227 Q 227
+
Sbjct: 352 K 352
>gb|AAP51779.1| putative bHLH transcription factor [Oryza sativa (japonica
cultivar-group)] gi|37530380|ref|NP_919492.1| putative
bHLH transcription factor [Oryza sativa (japonica
cultivar-group)] gi|18542931|gb|AAK00421.2| Putative
bHLH transcription factor [Oryza sativa]
Length = 361
Score = 45.4 bits (106), Expect = 0.001
Identities = 23/58 (39%), Positives = 36/58 (61%)
Query: 170 EIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
++EA VL+RV C + KGV+ K + ++EKL L N++ + F +L+ITI AQ
Sbjct: 282 KVEANLQGTTVLLRVVCPEKKGVLIKLLTELEKLGLSTMNTNVVPFADSSLNITITAQ 339
>gb|AAT85298.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 269
Score = 44.3 bits (103), Expect = 0.003
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 169 PEIEARFCDRN--VLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTF--GSCALDITI 224
PEIE R N V++R+HCE +GV+ + + ++E+++L++ N++ M F + ITI
Sbjct: 200 PEIEVRCSPTNNVVMVRIHCENGEGVIVRILAEVEEIHLRIINANVMPFLDQGATMIITI 259
Query: 225 IAQPTLS 231
A+ + S
Sbjct: 260 AAKASSS 266
>gb|AAP03375.1| putative ammonium transporter [Oryza sativa (japonica
cultivar-group)]
Length = 301
Score = 43.9 bits (102), Expect = 0.004
Identities = 22/67 (32%), Positives = 42/67 (61%), Gaps = 4/67 (5%)
Query: 169 PEIEARFCDRN--VLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTF--GSCALDITI 224
PEIE R N V++R+HCE +GV+ + + ++E+++L++ N++ M F + ITI
Sbjct: 211 PEIEVRCSPTNNVVMVRIHCENGEGVIVRILAEVEEIHLRIINANVMPFLDQGATMIITI 270
Query: 225 IAQPTLS 231
A+ ++
Sbjct: 271 AAKAKIN 277
>ref|XP_470603.1| Putative bHLH transcription factor [Oryza sativa (japonica
cultivar-group)] gi|20532320|gb|AAM27466.1| Putative
bHLH transcription factor [Oryza sativa (japonica
cultivar-group)]
Length = 451
Score = 43.5 bits (101), Expect = 0.005
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 169 PEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQP 228
P +EA VL+++ C++ +G++ + ++EK L + N+S + F L+ITI A+
Sbjct: 383 PTVEASIHGNTVLLKICCKERRGLLVMILSELEKQGLSIINTSVVPFTDSCLNITITAKA 442
Query: 229 TLSFYVFH 236
L+ V++
Sbjct: 443 RLALPVYY 450
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.364 0.163 0.551
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 289,447,565
Number of Sequences: 2540612
Number of extensions: 8937579
Number of successful extensions: 57105
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 57081
Number of HSP's gapped (non-prelim): 25
length of query: 240
length of database: 863,360,394
effective HSP length: 124
effective length of query: 116
effective length of database: 548,324,506
effective search space: 63605642696
effective search space used: 63605642696
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 73 (32.7 bits)
Medicago: description of AC124214.11