BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC123975.11 - phase: 0
(206 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63355.1| RNA polymerase I, II and III 24.3 kDa subunit [Ar... 323 2e-87
dbj|BAD68174.1| putative DNA-directed RNA polymerase II 23K chai... 291 6e-78
emb|CAD41325.2| OJ991113_30.8 [Oryza sativa (japonica cultivar-g... 276 3e-73
gb|AAW26085.1| unknown [Schistosoma japonicum] 229 5e-59
gb|AAF39906.1| Hypothetical protein H27M09.2 [Caenorhabditis ele... 228 1e-58
emb|CAE67293.1| Hypothetical protein CBG12745 [Caenorhabditis br... 226 4e-58
ref|XP_396561.1| PREDICTED: similar to ENSANGP00000006082 [Apis ... 225 5e-58
emb|CAG04853.1| unnamed protein product [Tetraodon nigroviridis] 225 7e-58
ref|NP_001003564.1| zgc:101098 [Danio rerio] gi|50417194|gb|AAH7... 224 1e-57
ref|XP_319221.1| ENSANGP00000006082 [Anopheles gambiae str. PEST... 223 2e-57
gb|AAH45521.1| Polr2e protein [Mus musculus] gi|54036414|sp|Q80U... 223 3e-57
dbj|BAA07406.1| RPB5 [Homo sapiens] 223 3e-57
gb|AAH60467.1| MGC68604 protein [Xenopus laevis] gi|62858213|ref... 223 3e-57
gb|AAH04441.1| DNA directed RNA polymerase II polypeptide E [Hom... 222 4e-57
gb|AAH34144.1| DNA directed RNA polymerase II polypeptide E [Hom... 222 6e-57
emb|CAH93079.1| hypothetical protein [Pongo pygmaeus] 221 1e-56
gb|AAC03238.1| RPB5_Human [Homo sapiens] 220 2e-56
gb|AAF58728.1| CG11979-PA [Drosophila melanogaster] gi|19922004|... 220 2e-56
ref|XP_216839.3| PREDICTED: similar to Polr2e protein [Rattus no... 216 2e-55
ref|XP_512960.1| PREDICTED: similar to DNA-directed RNA polymera... 203 3e-51
>gb|AAM63355.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
II and III 24.3 kDa subunit [Arabidopsis thaliana]
gi|15724322|gb|AAL06554.1| AT3g22320/MCB17_5
[Arabidopsis thaliana] gi|25083949|gb|AAN72141.1| RNA
polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana] gi|13899113|gb|AAK48978.1| RNA polymerase I,
II and III 24.3 kDa subunit [Arabidopsis thaliana]
gi|3372233|gb|AAC28253.1| RNA polymerase I, II and III
24.3 kDa subunit [Arabidopsis thaliana]
gi|15228724|ref|NP_188871.1| DNA-directed RNA
polymerase, putative [Arabidopsis thaliana]
gi|25288348|pir||T51950 DNA-directed RNA polymerase (EC
2.7.7.6) 23K chain [imported] - Arabidopsis thaliana
Length = 205
Score = 323 bits (828), Expect = 2e-87
Identities = 157/205 (76%), Positives = 182/205 (88%)
Query: 2 VFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKK 61
+ +EEE+ RLYRI+KT+MQML+DR Y + D EL M+K F K+G+NMKREDLV K K+
Sbjct: 1 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60
Query: 62 DKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASKF 121
+ SDQ+Y+FFP+EAKVGVKTMK YTNRM SENV+RAILV Q +LTPFA+TC+SEI+SKF
Sbjct: 61 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGL 181
HLEVFQEAE+LVNIKEHVLVPEHQ+L EKKTLLERYTVKETQLPRIQVTDP+ARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180
Query: 182 KRGQVVKIIRPSETAGRYVTYRFVV 206
KRGQVVKIIRPSETAGRYVTYR+VV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205
>dbj|BAD68174.1| putative DNA-directed RNA polymerase II 23K chain [Oryza sativa
(japonica cultivar-group)]
Length = 210
Score = 291 bits (746), Expect = 6e-78
Identities = 143/206 (69%), Positives = 171/206 (82%)
Query: 1 MVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTK 60
+V E + RL RIR+TVMQML+DR YLV + EL M + DF KYGE+ REDL+INK K
Sbjct: 5 LVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYK 64
Query: 61 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASK 120
K+ PSDQIYVFFP + KVG+K +K Y M +ENV RA+LV Q +LTPFA++ + E+ K
Sbjct: 65 KNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPK 124
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
HLE+FQEAELL+NIKEHVLVPEHQ+LN+ EKKTLLERYT+KETQLPRIQ+TDP+ARYYG
Sbjct: 125 IHLEIFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIARYYG 184
Query: 181 LKRGQVVKIIRPSETAGRYVTYRFVV 206
L+RGQVVKIIRPSETAGRYVTYR+VV
Sbjct: 185 LRRGQVVKIIRPSETAGRYVTYRYVV 210
>emb|CAD41325.2| OJ991113_30.8 [Oryza sativa (japonica cultivar-group)]
gi|50925339|ref|XP_472957.1| OJ991113_30.8 [Oryza sativa
(japonica cultivar-group)]
Length = 205
Score = 276 bits (706), Expect = 3e-73
Identities = 131/203 (64%), Positives = 170/203 (83%)
Query: 4 SEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKKDK 63
SEEE +RL+RIR+TVMQML+DR YLV + ++++ + DF ++G+ + R+ LV ++ KKD
Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62
Query: 64 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASKFHL 123
+DQIYVFFP++AK GVKT+++Y RM E+V+ ILV Q +L+ FA++ V E++ KFHL
Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122
Query: 124 EVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKR 183
EVFQEAELLVNIK+H LVPEH++L +KKTLLERYTVKETQLPRIQ+TDP+ARYYG+KR
Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQLPRIQITDPIARYYGMKR 182
Query: 184 GQVVKIIRPSETAGRYVTYRFVV 206
GQVVKIIR SETAGRYVTYR+VV
Sbjct: 183 GQVVKIIRASETAGRYVTYRYVV 205
>gb|AAW26085.1| unknown [Schistosoma japonicum]
Length = 206
Score = 229 bits (583), Expect = 5e-59
Identities = 113/206 (54%), Positives = 150/206 (71%), Gaps = 1/206 (0%)
Query: 2 VFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKK 61
+ + E +L+RIRKT+++M KDR YLV EL S DFK G+ R+DL++ +
Sbjct: 1 MLDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPARKDLLMVVNHE 60
Query: 62 DKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTS-LTPFAKTCVSEIASK 120
+ P+D +YVFFPEE KV +KT++ Y N+M ++ YRAILV Q LTP AKT ++E++ K
Sbjct: 61 EDPADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCK 120
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
+ LE F E EL+VNI EH LVP+H +L EKK LLERY +KE QLP++Q +DPVARYYG
Sbjct: 121 YTLECFFENELMVNITEHQLVPQHDVLTQEEKKELLERYRLKENQLPKMQASDPVARYYG 180
Query: 181 LKRGQVVKIIRPSETAGRYVTYRFVV 206
L+RGQVV+I RPSETAGRY+TYR V+
Sbjct: 181 LRRGQVVRITRPSETAGRYITYRIVL 206
>gb|AAF39906.1| Hypothetical protein H27M09.2 [Caenorhabditis elegans]
gi|54036433|sp|Q9N5K2|RPB5_CAEEL DNA-directed RNA
polymerases II 24 kDa polypeptide (RNA polymerase II
subunit 5) gi|17507947|ref|NP_491961.1| dna directed rna
polymerase ii polypeptide e (24.3 kD) (1H427)
[Caenorhabditis elegans]
Length = 211
Score = 228 bits (580), Expect = 1e-58
Identities = 117/211 (55%), Positives = 148/211 (69%), Gaps = 5/211 (2%)
Query: 1 MVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMK-----REDLV 55
M E E RL+RIRKTV+QM+ DR YLV EL+ FK +YG+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60
Query: 56 INKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVS 115
I D P+DQ++VFFPE+AK+G+KT+K +M +N+ RAI+V QT +TP AK +
Sbjct: 61 ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 116 EIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPV 175
++A K+ LE F EAEL+VNI EH LVPEH ++ EK LL RY +K++QLPRIQ DPV
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPV 180
Query: 176 ARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206
ARY+GL+RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 181 ARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211
>emb|CAE67293.1| Hypothetical protein CBG12745 [Caenorhabditis briggsae]
Length = 211
Score = 226 bits (575), Expect = 4e-58
Identities = 115/211 (54%), Positives = 147/211 (69%), Gaps = 5/211 (2%)
Query: 1 MVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMK-----REDLV 55
M E E RL+RIRKTV+QM+ DR YLV EL+ FK+ +G+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLT 60
Query: 56 INKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVS 115
I D P+DQ++VFFPE+ K+G+KT+K +M +N+ RAI+V QT +TP AK +
Sbjct: 61 ILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 116 EIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPV 175
++A K+ LE F EAEL+VNI EH LVPEH ++ EK LL RY +K++QLPRIQ DPV
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPV 180
Query: 176 ARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206
ARY+GL+RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 181 ARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211
>ref|XP_396561.1| PREDICTED: similar to ENSANGP00000006082 [Apis mellifera]
Length = 210
Score = 225 bits (574), Expect = 5e-58
Identities = 113/206 (54%), Positives = 147/206 (70%), Gaps = 5/206 (2%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMK-----REDLVINKT 59
E E +L+RIRKTVMQ+ DR YLV EL+ + FK+++G+ R DL++
Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
Query: 60 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
D P+DQ++VFFP+E K+G+KT+KTY RM E ++RAI+V Q +TP AK + ++A
Sbjct: 64 HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYY 179
K+ LE F E+ELL+NI EH LVPEH +L EK+ LL RY +KE QL RIQ DPVARY+
Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQAGDPVARYF 183
Query: 180 GLKRGQVVKIIRPSETAGRYVTYRFV 205
GLKRGQVVKIIRPSETAGRY++YR V
Sbjct: 184 GLKRGQVVKIIRPSETAGRYISYRLV 209
>emb|CAG04853.1| unnamed protein product [Tetraodon nigroviridis]
Length = 210
Score = 225 bits (573), Expect = 7e-58
Identities = 114/206 (55%), Positives = 146/206 (70%), Gaps = 5/206 (2%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENM-----KREDLVINKT 59
EEE RL++IRKT+MQ+ DR YLV EL+ + +FK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+V Q +TP AK + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYY 179
K+ LE F + ELL+NI EH LVPEH ++ E LL RY +KE+QLPRIQ DPVARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVARYF 183
Query: 180 GLKRGQVVKIIRPSETAGRYVTYRFV 205
GLKRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GLKRGQVVKIIRPSETAGRYITYRLV 209
>ref|NP_001003564.1| zgc:101098 [Danio rerio] gi|50417194|gb|AAH77151.1| Zgc:101098
[Danio rerio]
Length = 210
Score = 224 bits (571), Expect = 1e-57
Identities = 113/206 (54%), Positives = 146/206 (70%), Gaps = 5/206 (2%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENM-----KREDLVINKT 59
EEE RL++IRKT+MQ+ DR YLV EL+ + +F+ ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVA 63
Query: 60 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+V Q +TP AK + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYY 179
K+ LE F + ELL+NI EH LVPEH ++ E LL RY +KE+QLPRIQ DPVARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVARYF 183
Query: 180 GLKRGQVVKIIRPSETAGRYVTYRFV 205
GLKRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GLKRGQVVKIIRPSETAGRYITYRLV 209
>ref|XP_319221.1| ENSANGP00000006082 [Anopheles gambiae str. PEST]
gi|30174740|gb|EAA43596.1| ENSANGP00000006082 [Anopheles
gambiae str. PEST]
Length = 210
Score = 223 bits (569), Expect = 2e-57
Identities = 111/206 (53%), Positives = 147/206 (70%), Gaps = 5/206 (2%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMK-----REDLVINKT 59
+ E +L+RIRKTVMQ+ DR YLV EL+ + FK+++G+ R DL++
Sbjct: 4 DAETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
Query: 60 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
D P+DQ++VFFP+E K+G+KT+KTY RM EN++RAI+V Q +TP AK + ++A
Sbjct: 64 HNDDPTDQMFVFFPDEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYY 179
K+ LE F E+ELL+NI EH LVPEH ++ EK+ LL RY +KE L RIQ DPVARY+
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLARYKLKENMLMRIQAGDPVARYF 183
Query: 180 GLKRGQVVKIIRPSETAGRYVTYRFV 205
GLKRGQVVKIIRPSETAGRY++YR V
Sbjct: 184 GLKRGQVVKIIRPSETAGRYISYRLV 209
>gb|AAH45521.1| Polr2e protein [Mus musculus] gi|54036414|sp|Q80UW8|RPB5_MOUSE
DNA-directed RNA polymerase II 23 kDa polypeptide
(RPB25) (RPB5) (RPABC1) gi|28497750|ref|XP_282920.1|
PREDICTED: polymerase (RNA) II (DNA directed)
polypeptide E [Mus musculus]
Length = 210
Score = 223 bits (567), Expect = 3e-57
Identities = 111/206 (53%), Positives = 146/206 (69%), Gaps = 5/206 (2%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENM-----KREDLVINKT 59
EEE RL++IRKT+MQ+ DR YLV EL+ + +FK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP AK + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYY 179
K+ LE F + ELL+NI EH LVPEH ++ E LL RY ++E+QLPRIQ DPVARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183
Query: 180 GLKRGQVVKIIRPSETAGRYVTYRFV 205
G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209
>dbj|BAA07406.1| RPB5 [Homo sapiens]
Length = 210
Score = 223 bits (567), Expect = 3e-57
Identities = 111/206 (53%), Positives = 145/206 (69%), Gaps = 5/206 (2%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENM-----KREDLVINKT 59
EEE RL++IRKT+MQ+ DR YLV EL+ + +FK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP AK + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYY 179
K+ LE F E ELL+NI EH LVPEH ++ E LL RY ++E QLPRIQ DPVARY+
Sbjct: 124 KYILEQFLEQELLINITEHELVPEHVVMTKEEVSELLARYKLRENQLPRIQAGDPVARYF 183
Query: 180 GLKRGQVVKIIRPSETAGRYVTYRFV 205
G++RGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIRRGQVVKIIRPSETAGRYITYRLV 209
>gb|AAH60467.1| MGC68604 protein [Xenopus laevis] gi|62858213|ref|NP_001016473.1|
hypothetical protein LOC549227 [Xenopus tropicalis]
Length = 210
Score = 223 bits (567), Expect = 3e-57
Identities = 112/206 (54%), Positives = 146/206 (70%), Gaps = 5/206 (2%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENM-----KREDLVINKT 59
EEE RL++IRKT+MQ+ DR YLV EL+ + +FK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP AK + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYY 179
K+ LE F + ELL+NI EH LVPEH ++ E LL RY ++E+QLPRIQ DPVARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKLRESQLPRIQAGDPVARYF 183
Query: 180 GLKRGQVVKIIRPSETAGRYVTYRFV 205
GLKRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GLKRGQVVKIIRPSETAGRYITYRLV 209
>gb|AAH04441.1| DNA directed RNA polymerase II polypeptide E [Homo sapiens]
gi|54042064|sp|P19388|RPB5_HUMAN DNA-directed RNA
polymerase II 23 kDa polypeptide (RPB25) (RPB5) (RPABC1)
(XAP4) gi|678549|gb|AAA62401.1| RNA polymerase II 23kD
subunit gi|14589951|ref|NP_002686.2| DNA directed RNA
polymerase II polypeptide E [Homo sapiens]
Length = 210
Score = 222 bits (566), Expect = 4e-57
Identities = 111/206 (53%), Positives = 145/206 (69%), Gaps = 5/206 (2%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENM-----KREDLVINKT 59
EEE RL++IRKT+MQ+ DR YLV EL+ + +FK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP AK + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYY 179
K+ LE F + ELL+NI EH LVPEH ++ E LL RY ++E QLPRIQ DPVARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF 183
Query: 180 GLKRGQVVKIIRPSETAGRYVTYRFV 205
G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209
>gb|AAH34144.1| DNA directed RNA polymerase II polypeptide E [Homo sapiens]
Length = 210
Score = 222 bits (565), Expect = 6e-57
Identities = 111/206 (53%), Positives = 145/206 (69%), Gaps = 5/206 (2%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENM-----KREDLVINKT 59
EEE RL++IRKT+MQ+ DR YLV EL+ + +FK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP AK + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYY 179
K+ LE F + ELL+NI EH LVPEH ++ E LL RY ++E QLPRIQ DPVARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF 183
Query: 180 GLKRGQVVKIIRPSETAGRYVTYRFV 205
G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GVKRGQVVKIIRPSETAGRYITYRLV 209
>emb|CAH93079.1| hypothetical protein [Pongo pygmaeus]
Length = 210
Score = 221 bits (563), Expect = 1e-56
Identities = 110/206 (53%), Positives = 145/206 (69%), Gaps = 5/206 (2%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENM-----KREDLVINKT 59
EEE RL++IRKT+MQ+ DR YLV EL+ + +F+ ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP AK + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYY 179
K+ LE F + ELL+NI EH LVPEH ++ E LL RY ++E QLPRIQ DPVARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF 183
Query: 180 GLKRGQVVKIIRPSETAGRYVTYRFV 205
G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209
>gb|AAC03238.1| RPB5_Human [Homo sapiens]
Length = 210
Score = 220 bits (561), Expect = 2e-56
Identities = 111/206 (53%), Positives = 144/206 (69%), Gaps = 5/206 (2%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENM-----KREDLVINKT 59
EEE RL++IRKT+MQ+ DR YLV EL+ + +FK + G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63
Query: 60 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP AK + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYY 179
K+ LE F + ELL+NI EH LVPEH ++ E LL RY ++E QLPRIQ DPVARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF 183
Query: 180 GLKRGQVVKIIRPSETAGRYVTYRFV 205
G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209
>gb|AAF58728.1| CG11979-PA [Drosophila melanogaster] gi|19922004|ref|NP_610630.1|
CG11979-PA [Drosophila melanogaster]
gi|17945808|gb|AAL48951.1| RE34924p [Drosophila
melanogaster]
Length = 210
Score = 220 bits (561), Expect = 2e-56
Identities = 111/206 (53%), Positives = 145/206 (69%), Gaps = 5/206 (2%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMK-----REDLVINKT 59
E E +L+RIRKT+MQ+ DR YLV EL+ + FK+ +G+ R DL++
Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVA 63
Query: 60 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
D P+DQ++VFFPEE K+G+KT+KTY RM EN++RAI+V Q +TP AK + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYY 179
K+ LE F E+ELL+NI EH LVPEH ++ EK+ LL RY +KE L RIQ DPVARY+
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQAGDPVARYF 183
Query: 180 GLKRGQVVKIIRPSETAGRYVTYRFV 205
GLKRGQVVKIIR SETAGRY++YR V
Sbjct: 184 GLKRGQVVKIIRSSETAGRYISYRLV 209
>ref|XP_216839.3| PREDICTED: similar to Polr2e protein [Rattus norvegicus]
Length = 221
Score = 216 bits (551), Expect = 2e-55
Identities = 112/217 (51%), Positives = 147/217 (67%), Gaps = 16/217 (7%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENM-----KREDLVINKT 59
EEE RL++IRKT+MQ+ DR YLV EL+ + +FK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP AK + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYT-----------VKETQLPR 168
K+ LE F + ELL+NI EH LVPEH ++ E LL RYT ++E+QLPR
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYTAFQRFLDCSSKLRESQLPR 183
Query: 169 IQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFV 205
IQ DPVARY+G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 IQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 220
>ref|XP_512960.1| PREDICTED: similar to DNA-directed RNA polymerase II 23 kDa
polypeptide (RPB25) (RPB5) (RPABC1) (XAP4) [Pan
troglodytes]
Length = 221
Score = 203 bits (516), Expect = 3e-51
Identities = 101/192 (52%), Positives = 133/192 (68%), Gaps = 5/192 (2%)
Query: 19 MQMLKDRNYLVGDFELNMSKHDFKDKYGENM-----KREDLVINKTKKDKPSDQIYVFFP 73
+Q+ DR YLV EL+ + +FK ++G+ +R DL + D P+DQ++VFFP
Sbjct: 29 LQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 88
Query: 74 EEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASKFHLEVFQEAELLV 133
EE KVG+KT+K Y RM EN+ RA++V Q +TP AK + ++A K+ LE F + ELL+
Sbjct: 89 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 148
Query: 134 NIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPS 193
NI EH LVPEH ++ E LL RY ++E QLPRIQ DPVARY+G+KRGQVVKIIRPS
Sbjct: 149 NITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPS 208
Query: 194 ETAGRYVTYRFV 205
ETAGRY+TYR V
Sbjct: 209 ETAGRYITYRLV 220
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.135 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 322,123,902
Number of Sequences: 2540612
Number of extensions: 12710648
Number of successful extensions: 33944
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 33733
Number of HSP's gapped (non-prelim): 171
length of query: 206
length of database: 863,360,394
effective HSP length: 122
effective length of query: 84
effective length of database: 553,405,730
effective search space: 46486081320
effective search space used: 46486081320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)
Medicago: description of AC123975.11