BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC123899.6 + phase: 0 /pseudo
(513 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA09199.1| RNA helicase [Arabidopsis thaliana] gi|11267537|... 707 0.0
gb|AAM45033.1| putative RNA helicase [Arabidopsis thaliana] gi|1... 706 0.0
ref|XP_466991.1| putative RNA helicase [Oryza sativa (japonica c... 684 0.0
emb|CAB80875.1| putative RNA helicase [Arabidopsis thaliana] gi|... 677 0.0
gb|AAC28543.1| putative ATP-dependent RNA helicase [Arabidopsis ... 666 0.0
ref|XP_466992.1| putative RNA helicase [Oryza sativa (japonica c... 665 0.0
emb|CAE04571.1| OSJNBb0039L24.10 [Oryza sativa (japonica cultiva... 664 0.0
gb|AAO11625.1| At2g45810/F4I18.21 [Arabidopsis thaliana] gi|1453... 664 0.0
gb|AAP54500.1| putative RNA helicase [Oryza sativa (japonica cul... 659 0.0
emb|CAB71054.1| DEAD box RNA helicase RH12 [Arabidopsis thaliana... 647 0.0
emb|CAA09203.1| RNA helicase [Arabidopsis thaliana] gi|11267538|... 640 0.0
gb|AAX95709.1| DEAD/DEAH box helicase, putative [Oryza sativa (j... 565 e-159
ref|XP_629938.1| hypothetical protein DDB0184074 [Dictyostelium ... 509 e-143
emb|CAH79576.1| ATP-dependent RNA helicase, putative [Plasmodium... 501 e-140
ref|NP_473317.1| ATP-dependent RNA helicase, putative [Plasmodiu... 497 e-139
gb|EAA21264.1| ATP-dependent RNA Helicase [Plasmodium yoelii yoe... 495 e-138
gb|EAK84197.1| hypothetical protein UM03329.1 [Ustilago maydis 5... 494 e-138
gb|EAL93020.1| ATP dependent RNA helicase (Dhh1), putative [Aspe... 493 e-138
emb|CAG78499.1| YlDHH1 [Yarrowia lipolytica CLIB99] gi|50556564|... 491 e-137
emb|CAA22882.1| ste13 [Schizosaccharomyces pombe] gi|19113116|re... 486 e-136
>emb|CAA09199.1| RNA helicase [Arabidopsis thaliana] gi|11267537|pir||T51741 RNA
helicase RH8 [imported] - Arabidopsis thaliana
Length = 505
Score = 707 bits (1826), Expect = 0.0
Identities = 384/528 (72%), Positives = 410/528 (76%), Gaps = 43/528 (8%)
Query: 4 NNRGRYPPGIGLGRGGSGGGGGGLTSNSNTGFQQRPHHQYQQQQQYVQR-HMMQNQHQQH 62
NNRGRYPPGIG GRG N N +Q R +Q QYVQR + QN QQ
Sbjct: 2 NNRGRYPPGIGAGRGAF---------NPNPNYQSRSGYQQHPPPQYVQRGNYAQNHQQQF 52
Query: 63 YQNQQQNQQQNQQQQQQQQWLRRNQL-GGGTDTNVVEEVEKTVQSEANDSSSQDWKARLK 121
Q Q Q QQQQQQQQWLRR Q+ GG ++ + V EVEKTVQSE D +S+DWKARLK
Sbjct: 53 QQAPSQPHQYQQQQQQQQQWLRRGQIPGGNSNGDAVVEVEKTVQSEVIDPNSEDWKARLK 112
Query: 122 LPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDIL 181
LP DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTG DIL
Sbjct: 113 LPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDIL 172
Query: 182 ARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMV 241
ARAKNGTGKTAAF IP LEKIDQDNN+IQ VI+VPTRELALQTSQVCKELGKHL+IQVMV
Sbjct: 173 ARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMV 232
Query: 242 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQP 301
TTGGTSLKDDIMRLYQPVHLLVGTPGRILDL KKGVCVLKDCS+LVMDEADKLLS EFQP
Sbjct: 233 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQP 292
Query: 302 SIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEE 361
S+E LI FLP +RQILMFSATFPVTVKDFKDR+L PY+INLMDELTLKGITQFYAFVEE
Sbjct: 293 SVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGITQFYAFVEE 352
Query: 362 RQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSCKDVARPP**SFP 421
RQK+HCLNTLFSK LQ +S C N RV + ++ S
Sbjct: 353 RQKIHCLNTLFSK---------LQINQSI-IFC--NSVNRVELLAKKITELGY----SCS 396
Query: 422 RLPQWCMQESR--------------LYC--LFTRGIDIQAVNVVINFDFPKNSETYLHRV 465
+ +Q+ R L C LFTRGIDIQAVNVVINFDFPKN+ETYLHRV
Sbjct: 397 YIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRV 456
Query: 466 GRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC 513
GRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPP IDQAIYC
Sbjct: 457 GRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYC 504
>gb|AAM45033.1| putative RNA helicase [Arabidopsis thaliana]
gi|19423939|gb|AAL87312.1| putative RNA helicase
[Arabidopsis thaliana] gi|22328183|ref|NP_191975.2|
DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
gi|30678703|ref|NP_849535.1| DEAD/DEAH box helicase,
putative [Arabidopsis thaliana]
Length = 505
Score = 706 bits (1823), Expect = 0.0
Identities = 381/517 (73%), Positives = 406/517 (77%), Gaps = 21/517 (4%)
Query: 4 NNRGRYPPGIGLGRGGSGGGGGGLTSNSNTGFQQRPHHQYQQQQQYVQR-HMMQNQHQQH 62
NNRGRYPPGIG GRG N N +Q R +Q QYVQR + QN QQ
Sbjct: 2 NNRGRYPPGIGAGRGAF---------NPNPNYQSRSGYQQHPPPQYVQRGNYAQNHQQQF 52
Query: 63 YQNQQQNQQQNQQQQQQQQWLRRNQL-GGGTDTNVVEEVEKTVQSEANDSSSQDWKARLK 121
Q Q Q QQQQQQQQWLRR Q+ GG ++ + V EVEKTVQSE D +S+DWKARLK
Sbjct: 53 QQAPSQPHQYQQQQQQQQQWLRRGQIPGGNSNGDAVVEVEKTVQSEVIDPNSEDWKARLK 112
Query: 122 LPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDIL 181
LP DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTG DIL
Sbjct: 113 LPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDIL 172
Query: 182 ARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMV 241
ARAKNGTGKTAAF IP LEKIDQDNN+IQ VI+VPTRELALQTSQVCKELGKHL+IQVMV
Sbjct: 173 ARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMV 232
Query: 242 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQP 301
TTGGTSLKDDIMRLYQPVHLLVGTPGRILDL KKGVCVLKDCS+LVMDEADKLLS EFQP
Sbjct: 233 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQP 292
Query: 302 SIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEE 361
S+E LI FLP +RQILMFSATFPVTVKDFKDR+L PY+INLMDELTLKGITQFYAFVEE
Sbjct: 293 SVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGITQFYAFVEE 352
Query: 362 RQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSC-----KDVARPP 416
RQK+HCLNTLFSK I+ + F S E ++ YSC K +
Sbjct: 353 RQKIHCLNTLFSKL---QINQSIIFCNS--VNRVELLAKKITELGYSCFYIHAKMLQDHR 407
Query: 417 **SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGL 476
F + LFTRGIDIQAVNVVINFDFPKN+ETYLHRVGRSGRFGHLGL
Sbjct: 408 NRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGL 467
Query: 477 AVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC 513
AVNLITYEDRFNLYRIEQELGTEIKQIPP IDQAIYC
Sbjct: 468 AVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYC 504
>ref|XP_466991.1| putative RNA helicase [Oryza sativa (japonica cultivar-group)]
gi|49388093|dbj|BAD25226.1| putative RNA helicase [Oryza
sativa (japonica cultivar-group)]
Length = 508
Score = 684 bits (1765), Expect = 0.0
Identities = 377/525 (71%), Positives = 405/525 (76%), Gaps = 38/525 (7%)
Query: 6 RGRYPPGIGLGRGGSGGGGGGLTSNSNTGFQQRPHHQYQQQ------QQYVQRHMMQNQH 59
R RYPPGIG GRGG+ N QQ+ +H QQQ QQYVQR Q+ H
Sbjct: 4 RARYPPGIGNGRGGNPN-----YYNRGPPLQQQHNHHQQQQTSAPHHQQYVQRQPQQHHH 58
Query: 60 QQHYQNQQQNQQQNQQQQQQQQWLRRNQLG---GGTDTNVVEEVEKTVQSEAND---SSS 113
H+Q Q QQQQQQWLRRNQ+ GTD N E + QS A D SSS
Sbjct: 59 HNHHQ---------QHQQQQQQWLRRNQIAREAAGTDRN--SEPKAVAQSPAVDGIDSSS 107
Query: 114 QDWKARLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPI 173
QDWKA+LKLPP DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPI
Sbjct: 108 QDWKAQLKLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPI 167
Query: 174 ALTGSDILARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGK 233
ALTGSDILARAKNGTGKTAAF IPALEKIDQ+ N IQVVILVPTRELALQTSQVCKELGK
Sbjct: 168 ALTGSDILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGK 227
Query: 234 HLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADK 293
HL+IQVMVTTGGTSLKDDI+RLYQPVHLLVGTPGRILDL KKG+C+LKDCSML+MDEADK
Sbjct: 228 HLKIQVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRILDLTKKGICILKDCSMLIMDEADK 287
Query: 294 LLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGIT 353
LLSPEFQPS+EQLI++LP +RQILMFSATFPVTVK+FKD+YL KPY+INLMDELTLKGIT
Sbjct: 288 LLSPEFQPSVEQLIRYLPASRQILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGIT 347
Query: 354 QFYAFVEERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSC---- 409
QFYAFVEERQKVHCLNTLFSK I+ + F S E ++ YSC
Sbjct: 348 QFYAFVEERQKVHCLNTLFSKL---QINQSIIFCNS--VNRVELLAKKITELGYSCFYIH 402
Query: 410 -KDVARPP**SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRS 468
K + F + LFTRGIDIQAVNVVINFDFPK +ETYLHRVGRS
Sbjct: 403 AKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRS 462
Query: 469 GRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC 513
GRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK IPP IDQAIYC
Sbjct: 463 GRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKPIPPQIDQAIYC 507
>emb|CAB80875.1| putative RNA helicase [Arabidopsis thaliana]
gi|3047117|gb|AAC13628.1| similar to ATP-dependent RNA
helicases [Arabidopsis thaliana] gi|7436453|pir||T01230
probable RNA helicase (EC 3.6.1.-) F6N23.6 - Arabidopsis
thaliana
Length = 499
Score = 677 bits (1747), Expect = 0.0
Identities = 370/517 (71%), Positives = 396/517 (76%), Gaps = 27/517 (5%)
Query: 4 NNRGRYPPGIGLGRGGSGGGGGGLTSNSNTGFQQRPHHQYQQQQQYVQR-HMMQNQHQQH 62
NNRGRYPPGIG GRG N N +Q R +Q QYVQR + QN QQ
Sbjct: 2 NNRGRYPPGIGAGRGAF---------NPNPNYQSRSGYQQHPPPQYVQRGNYAQNHQQQF 52
Query: 63 YQNQQQNQQQNQQQQQQQQWLRRNQL-GGGTDTNVVEEVEKTVQSEANDSSSQDWKARLK 121
Q Q Q QQQQQQQQWLRR Q+ GG ++ + V EVEKTVQSE D +S+DWKARLK
Sbjct: 53 QQAPSQPHQYQQQQQQQQQWLRRGQIPGGNSNGDAVVEVEKTVQSEVIDPNSEDWKARLK 112
Query: 122 LPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDIL 181
LP DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTG DIL
Sbjct: 113 LPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDIL 172
Query: 182 ARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMV 241
ARAKNGTGKTAAF IP LEKIDQDNN+IQ ++ TSQVCKELGKHL+IQVMV
Sbjct: 173 ARAKNGTGKTAAFCIPVLEKIDQDNNVIQGNCVLD------HTSQVCKELGKHLKIQVMV 226
Query: 242 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQP 301
TTGGTSLKDDIMRLYQPVHLLVGTPGRILDL KKGVCVLKDCS+LVMDEADKLLS EFQP
Sbjct: 227 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQP 286
Query: 302 SIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEE 361
S+E LI FLP +RQILMFSATFPVTVKDFKDR+L PY+INLMDELTLKGITQFYAFVEE
Sbjct: 287 SVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGITQFYAFVEE 346
Query: 362 RQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSC-----KDVARPP 416
RQK+HCLNTLFSK I+ + F S E ++ YSC K +
Sbjct: 347 RQKIHCLNTLFSKL---QINQSIIFCNS--VNRVELLAKKITELGYSCFYIHAKMLQDHR 401
Query: 417 **SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGL 476
F + LFTRGIDIQAVNVVINFDFPKN+ETYLHRVGRSGRFGHLGL
Sbjct: 402 NRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGL 461
Query: 477 AVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC 513
AVNLITYEDRFNLYRIEQELGTEIKQIPP IDQAIYC
Sbjct: 462 AVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYC 498
>gb|AAC28543.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|15225898|ref|NP_182105.1| DEAD/DEAH box helicase,
putative [Arabidopsis thaliana] gi|7436454|pir||T02466
probable ATP-dependent RNA helicase [imported] -
Arabidopsis thaliana
Length = 528
Score = 666 bits (1718), Expect = 0.0
Identities = 365/531 (68%), Positives = 406/531 (75%), Gaps = 26/531 (4%)
Query: 2 NNNNRGRYPPGIGLGRGGSGGGGGGLTSN---------SNTGFQQRPHHQ---YQQQQQY 49
NNNNRGR+PPGIG G N S T F Q+P Q Y Q Q
Sbjct: 4 NNNNRGRFPPGIGAAGPGPDPNFQSRNPNPPQPQQYLQSRTPFPQQPQPQPPQYLQSQSD 63
Query: 50 VQRHMMQNQHQQHYQNQQ-QNQQQNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEA 108
Q+++ + QQ Q QQ Q QQQ QQQQQ+QQW RR QL G D + ++EVEKTVQSEA
Sbjct: 64 AQQYVQRGYPQQIQQQQQLQQQQQQQQQQQEQQWSRRAQLPG--DPSYIDEVEKTVQSEA 121
Query: 109 -NDSSSQDWKARLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQ 167
+DS+++DWKA LKLPP D RY+TEDVTATKGNEFEDYFLKR+LL GIYEKGFE+PSPIQ
Sbjct: 122 ISDSNNEDWKATLKLPPRDNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQ 181
Query: 168 EESIPIALTGSDILARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQV 227
EESIPIALTGSDILARAKNGTGKT AF IP LEKID +NN+IQ VILVPTRELALQTSQV
Sbjct: 182 EESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQV 241
Query: 228 CKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLV 287
CKEL K+L+I+VMVTTGGTSL+DDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDC+MLV
Sbjct: 242 CKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLV 301
Query: 288 MDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDEL 347
MDEADKLLS EFQPSIE+LIQFLP +RQILMFSATFPVTVK FKDRYL+KPYIINLMD+L
Sbjct: 302 MDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINLMDQL 361
Query: 348 TLKGITQFYAFVEERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLY 407
TL G+TQ+YAFVEERQKVHCLNTLFSK I+ + F S E ++ Y
Sbjct: 362 TLMGVTQYYAFVEERQKVHCLNTLFSKL---QINQSIIFCNS--VNRVELLAKKITELGY 416
Query: 408 SC-----KDVARPP**SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYL 462
SC K V F + LFTRGIDIQAVNVVINFDFP+ SE+YL
Sbjct: 417 SCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYL 476
Query: 463 HRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC 513
HRVGRSGRFGHLGLAVNL+TYEDRF +Y+ EQELGTEIK IP ID+AIYC
Sbjct: 477 HRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSLIDKAIYC 527
>ref|XP_466992.1| putative RNA helicase [Oryza sativa (japonica cultivar-group)]
gi|49388094|dbj|BAD25227.1| putative RNA helicase [Oryza
sativa (japonica cultivar-group)]
Length = 483
Score = 665 bits (1715), Expect = 0.0
Identities = 369/519 (71%), Positives = 395/519 (76%), Gaps = 51/519 (9%)
Query: 6 RGRYPPGIGLGRGGSGGGGGGLTSNSNTGFQQRPHHQYQQQQQYVQRHMMQNQHQQHYQN 65
R RYPPGIG GRGG N N Y + +Q+H N HQQH
Sbjct: 4 RARYPPGIGNGRGG----------NPN----------YYNRGPPLQQHHHHNHHQQH--- 40
Query: 66 QQQNQQQNQQQQQQQQWLRRNQLG---GGTDTNVVEEVEKTVQSEAND---SSSQDWKAR 119
QQQQQQWLRRNQ+ GTD N E + QS A D SSSQDWKA+
Sbjct: 41 ----------QQQQQQWLRRNQIAREAAGTDRN--SEPKAVAQSPAVDGIDSSSQDWKAQ 88
Query: 120 LKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSD 179
LKLPP DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSD
Sbjct: 89 LKLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSD 148
Query: 180 ILARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQV 239
ILARAKNGTGKTAAF IPALEKIDQ+ N IQVVILVPTRELALQTSQVCKELGKHL+IQV
Sbjct: 149 ILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGKHLKIQV 208
Query: 240 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEF 299
MVTTGGTSLKDDI+RLYQPVHLLVGTPGRILDL KKG+C+LKDCSML+MDEADKLLSPEF
Sbjct: 209 MVTTGGTSLKDDIIRLYQPVHLLVGTPGRILDLTKKGICILKDCSMLIMDEADKLLSPEF 268
Query: 300 QPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFV 359
QPS+EQLI++LP +RQILMFSATFPVTVK+FKD+YL KPY+INLMDELTLKGITQFYAFV
Sbjct: 269 QPSVEQLIRYLPASRQILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFV 328
Query: 360 EERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSC-----KDVAR 414
EERQKVHCLNTLFSK I+ + F S E ++ YSC K +
Sbjct: 329 EERQKVHCLNTLFSKL---QINQSIIFCNS--VNRVELLAKKITELGYSCFYIHAKMLQD 383
Query: 415 PP**SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHL 474
F + LFTRGIDIQAVNVVINFDFPK +ETYLHRVGRSGRFGHL
Sbjct: 384 HRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHL 443
Query: 475 GLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC 513
GLAVNLITYEDRFNLYRIEQELGTEIK IPP IDQAIYC
Sbjct: 444 GLAVNLITYEDRFNLYRIEQELGTEIKPIPPQIDQAIYC 482
>emb|CAE04571.1| OSJNBb0039L24.10 [Oryza sativa (japonica cultivar-group)]
gi|50926692|ref|XP_473293.1| OSJNBb0039L24.10 [Oryza
sativa (japonica cultivar-group)]
Length = 498
Score = 664 bits (1713), Expect = 0.0
Identities = 363/513 (70%), Positives = 392/513 (75%), Gaps = 24/513 (4%)
Query: 6 RGRYPPGIGLGRGGSGGGGGGLTSNSNTGFQQRPHHQYQQQQQYVQRHMMQNQHQQHYQN 65
R RYPPGIG GRGG N N + P Q+QQ Q Q + H Y
Sbjct: 4 RARYPPGIGNGRGG----------NPNYYGRGPPPSQHQQHQH--QHQQPPHPHHHQYVQ 51
Query: 66 QQQNQQQNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEANDSSSQDWKARLKLPPA 125
+Q QQ Q QQWLRRNQ+ + E + ++ DSSSQDWKA+LKLPP
Sbjct: 52 RQPQPQQTPHNSQHQQWLRRNQIAA--EAAGASEQKAPPVADGIDSSSQDWKAQLKLPPQ 109
Query: 126 DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAK 185
DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAK
Sbjct: 110 DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAK 169
Query: 186 NGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGG 245
NGTGKTAAF IPALEKIDQD N IQVVILVPTRELALQTSQVCKELGKHL+IQVMVTTGG
Sbjct: 170 NGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGG 229
Query: 246 TSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQ 305
TSLKDDI+RLYQPVHLLVGTPGRILDL KKGVCVLK+CSMLVMDEADKLLSPEFQPSI++
Sbjct: 230 TSLKDDIVRLYQPVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLLSPEFQPSIQE 289
Query: 306 LIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEERQKV 365
LI++LP RQILMFSATFPVTVK+FKD+YL KPY+INLMDELTLKGITQFYAFVEERQKV
Sbjct: 290 LIRYLPSNRQILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKV 349
Query: 366 HCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSC-----KDVARPP**SF 420
HCLNTLFSK I+ + F S E ++ YSC K + F
Sbjct: 350 HCLNTLFSKL---QINQSIIFCNS--VNRVELLAKKITELGYSCFYIHAKMLQDHRNRVF 404
Query: 421 PRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNL 480
+ LFTRGIDIQAVNVVINFDFPK++ETYLHRVGRSGRFGHLGLAVNL
Sbjct: 405 HDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNL 464
Query: 481 ITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC 513
ITYEDRFNLYRIEQELGTEIK IPP ID+AIYC
Sbjct: 465 ITYEDRFNLYRIEQELGTEIKPIPPQIDRAIYC 497
>gb|AAO11625.1| At2g45810/F4I18.21 [Arabidopsis thaliana]
gi|14532476|gb|AAK63966.1| At2g45810/F4I18.21
[Arabidopsis thaliana]
Length = 528
Score = 664 bits (1712), Expect = 0.0
Identities = 364/531 (68%), Positives = 405/531 (75%), Gaps = 26/531 (4%)
Query: 2 NNNNRGRYPPGIGLGRGGSGGGGGGLTSN---------SNTGFQQRPHHQ---YQQQQQY 49
NNNNRGR+PPGIG G N S T F Q+P Q Y Q Q
Sbjct: 4 NNNNRGRFPPGIGAAGPGPDPNFQSRNPNPPQPQQYLQSRTPFPQQPQPQPPQYLQSQSD 63
Query: 50 VQRHMMQNQHQQHYQNQQ-QNQQQNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEA 108
Q+++ + QQ Q QQ Q QQQ QQQQQ+QQW RR QL G D + ++EVEKTVQSEA
Sbjct: 64 AQQYVQRGYPQQIQQQQQLQQQQQQQQQQQEQQWSRRAQLPG--DPSYIDEVEKTVQSEA 121
Query: 109 -NDSSSQDWKARLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQ 167
+DS+++DWKA LKLPP D RY+TEDVTATKGNEFEDY LKR+LL GIYEKGFE+PSPIQ
Sbjct: 122 ISDSNNEDWKATLKLPPRDNRYQTEDVTATKGNEFEDYLLKRDLLRGIYEKGFEKPSPIQ 181
Query: 168 EESIPIALTGSDILARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQV 227
EESIPIALTGSDILARAKNGTGKT AF IP LEKID +NN+IQ VILVPTRELALQTSQV
Sbjct: 182 EESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQV 241
Query: 228 CKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLV 287
CKEL K+L+I+VMVTTGGTSL+DDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDC+MLV
Sbjct: 242 CKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLV 301
Query: 288 MDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDEL 347
MDEADKLLS EFQPSIE+LIQFLP +RQILMFSATFPVTVK FKDRYL+KPYIINLMD+L
Sbjct: 302 MDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINLMDQL 361
Query: 348 TLKGITQFYAFVEERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLY 407
TL G+TQ+YAFVEERQKVHCLNTLFSK I+ + F S E ++ Y
Sbjct: 362 TLMGVTQYYAFVEERQKVHCLNTLFSKL---QINQSIIFCNS--VNRVELLAKKITELGY 416
Query: 408 SC-----KDVARPP**SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYL 462
SC K V F + LFTRGIDIQAVNVVINFDFP+ SE+YL
Sbjct: 417 SCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYL 476
Query: 463 HRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC 513
HRVGRSGRFGHLGLAVNL+TYEDRF +Y+ EQELGTEIK IP ID+AIYC
Sbjct: 477 HRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSLIDKAIYC 527
>gb|AAP54500.1| putative RNA helicase [Oryza sativa (japonica cultivar-group)]
gi|37535822|ref|NP_922213.1| putative RNA helicase
[Oryza sativa (japonica cultivar-group)]
gi|10140782|gb|AAG13612.1| putative RNA helicase [Oryza
sativa (japonica cultivar-group)]
Length = 521
Score = 659 bits (1701), Expect = 0.0
Identities = 365/527 (69%), Positives = 392/527 (74%), Gaps = 30/527 (5%)
Query: 6 RGRYPPGI--------------GLGRGGSGGGGGGLTSNSNTGFQQRPHHQYQQQQQYVQ 51
R RYPPG G G GG G GGGG N G+ R QQQ Y
Sbjct: 5 RARYPPGYTSGGGGGGGGGGGGGRGNGGGGFGGGGGGGGGNHGYYGRGPQPQPQQQHY-- 62
Query: 52 RHMMQNQHQQHYQNQQQNQQQNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEANDS 111
H Q HQ +Q QQQ+ Q+N QQQQ WLRR+Q + V Q EA DS
Sbjct: 63 HHQAQQLHQ--HQQQQQHAQRNSSSQQQQ-WLRRDQATAAAASGEVA-ARTAAQLEAVDS 118
Query: 112 SSQDWKARLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESI 171
SS+DWKA+L LP DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESI
Sbjct: 119 SSEDWKAQLNLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESI 178
Query: 172 PIALTGSDILARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKEL 231
PIALTGSDILARAKNGTGKTAAF IPALEKID + N IQVVILVPTRELALQTSQVCKEL
Sbjct: 179 PIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKEL 238
Query: 232 GKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEA 291
GK+L IQVMV+TGGTSLKDDIMRLYQPVHLLVGTPGRILDL +KG+CVLKDCSMLVMDEA
Sbjct: 239 GKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEA 298
Query: 292 DKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKG 351
DKLL+PEFQPSIEQLI FLP RQ+LMFSATFPVTVKDFK++YL +PY+INLMDELTLKG
Sbjct: 299 DKLLAPEFQPSIEQLIHFLPANRQLLMFSATFPVTVKDFKEKYLPRPYVINLMDELTLKG 358
Query: 352 ITQFYAFVEERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSC-- 409
ITQ+YAFVEERQKVHCLNTLFSK I+ + F S E ++ YSC
Sbjct: 359 ITQYYAFVEERQKVHCLNTLFSKL---QINQSIIFCNS--VNRVELLAKKITELGYSCFY 413
Query: 410 ---KDVARPP**SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVG 466
K + F + LFTRGIDIQAVNVVINFDFPK SETYLHRVG
Sbjct: 414 IHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVG 473
Query: 467 RSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC 513
RSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK IPP ID A+YC
Sbjct: 474 RSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKTIPPQIDLAVYC 520
>emb|CAB71054.1| DEAD box RNA helicase RH12 [Arabidopsis thaliana]
gi|23197660|gb|AAN15357.1| DEAD box RNA helicase RH12
[Arabidopsis thaliana] gi|21539435|gb|AAM53270.1| DEAD
box RNA helicase RH12 [Arabidopsis thaliana]
gi|42572753|ref|NP_974472.1| DEAD/DEAH box helicase,
putative (RH12) [Arabidopsis thaliana]
gi|15233064|ref|NP_191683.1| DEAD/DEAH box helicase,
putative (RH12) [Arabidopsis thaliana]
gi|11267540|pir||T47916 DEAD box RNA helicase RH12 -
Arabidopsis thaliana
Length = 498
Score = 647 bits (1668), Expect = 0.0
Identities = 354/518 (68%), Positives = 391/518 (75%), Gaps = 29/518 (5%)
Query: 3 NNNRGRYPPGIGLGRGGSGGGGGGLTSNSNTGFQQRPHHQYQ-QQQQYVQRHMMQNQHQQ 61
N NRGRYPPG+G GRG N + Q Q Q QQYVQR QN Q
Sbjct: 2 NTNRGRYPPGVGTGRGAP----------PNPDYHQSYRQQQPPQDQQYVQRGYSQNPQQM 51
Query: 62 HYQNQQQNQQQNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEAN-DSSSQDWKARL 120
Q QQQ+QQQQQQQQW RR QL G +N E V++T Q EA+ D++ QDWKA L
Sbjct: 52 ------QLQQQHQQQQQQQQWSRRPQLPGNA-SNANEVVQQTTQPEASSDANGQDWKATL 104
Query: 121 KLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDI 180
+LPP DTRY+T DVTATKGNEFEDYFLKR+LL GIYEKGFE+PSPIQEESIPIALTGSDI
Sbjct: 105 RLPPPDTRYQTADVTATKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDI 164
Query: 181 LARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVM 240
LARAKNGTGKT AF IP LEKID +NN+IQ +ILVPTRELALQTSQVCKEL K+L IQVM
Sbjct: 165 LARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVM 224
Query: 241 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQ 300
VTTGGTSL+DDIMRL+QPVHLLVGTPGRILDL KKGVCVLKDC+MLVMDEADKLLS EFQ
Sbjct: 225 VTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQ 284
Query: 301 PSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVE 360
PS+E+LIQFLP RQ LMFSATFPVTVK FKDR+LRKPY+INLMD+LTL G+TQ+YAFVE
Sbjct: 285 PSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYAFVE 344
Query: 361 ERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSC-----KDVARP 415
ERQKVHCLNTLFSK I+ + F S E ++ YSC K V
Sbjct: 345 ERQKVHCLNTLFSKL---QINQSIIFCNS--VNRVELLAKKITELGYSCFYIHAKMVQDH 399
Query: 416 P**SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLG 475
F + LFTRGIDIQAVNVVINFDFP+ SE+YLHRVGRSGRFGHLG
Sbjct: 400 RNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLG 459
Query: 476 LAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC 513
LAVNL+TYEDRF +Y+ EQELGTEIK IP IDQAIYC
Sbjct: 460 LAVNLVTYEDRFKMYQTEQELGTEIKPIPSNIDQAIYC 497
>emb|CAA09203.1| RNA helicase [Arabidopsis thaliana] gi|11267538|pir||T51743 RNA
helicase RH12 [imported] - Arabidopsis thaliana
Length = 498
Score = 640 bits (1651), Expect = 0.0
Identities = 350/517 (67%), Positives = 393/517 (75%), Gaps = 27/517 (5%)
Query: 3 NNNRGRYPPGIGLGRGGSGGGGGGLTSNSNTGFQQRPHHQYQQQQQYVQRHMMQNQHQQH 62
N NRGRYPPG+G GRG N + ++Q+ Q Q QQYVQR QN Q
Sbjct: 2 NTNRGRYPPGVGTGRGAPPN------PNYHQSYRQQ---QPPQDQQYVQRGYSQNPQQM- 51
Query: 63 YQNQQQNQQQNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEAN-DSSSQDWKARLK 121
Q QQQ+QQQQQQQQW +R QL +N E V++T Q EA+ D++ Q+WKA L+
Sbjct: 52 -----QLQQQHQQQQQQQQWSKRPQLPENA-SNANEVVQQTTQPEASSDANGQNWKATLR 105
Query: 122 LPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDIL 181
LPP DTRY+T DVTATKGNEFE+YFLKR+LL GIYEKGFE+PSPIQEESIPIALTGSDIL
Sbjct: 106 LPPPDTRYQTADVTATKGNEFENYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDIL 165
Query: 182 ARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMV 241
ARAKNGTGKT AF IP LEKID +NN+IQ +ILVPTRELALQTSQVCKEL K+L IQVMV
Sbjct: 166 ARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMV 225
Query: 242 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQP 301
TTGGTSL+DDIMRL+QPVHLLVGTPGRILDL KKGVCVLKDC+MLVMDEADKLLS EFQP
Sbjct: 226 TTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQP 285
Query: 302 SIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEE 361
S+E+LIQFLP RQ LMFSATFPVTVK FKDR+LRKPY+INLMD+LTL G+TQ+YAFVEE
Sbjct: 286 SLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYAFVEE 345
Query: 362 RQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSC-----KDVARPP 416
RQKVHCLNTLFSK I+ + F S E ++ YSC K V
Sbjct: 346 RQKVHCLNTLFSKL---QINQSIIFCNS--VNRVELLAKKITELGYSCFYIHAKMVQDHR 400
Query: 417 **SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGL 476
F + LFTRGIDIQAVNVVINFDFP+ SE+YLHRVGRSGRFGHLGL
Sbjct: 401 NRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGL 460
Query: 477 AVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC 513
AVNL+TYEDRF +Y+ EQELGTEIK IP IDQAIYC
Sbjct: 461 AVNLVTYEDRFKMYQTEQELGTEIKPIPSNIDQAIYC 497
>gb|AAX95709.1| DEAD/DEAH box helicase, putative [Oryza sativa (japonica
cultivar-group)]
Length = 532
Score = 565 bits (1456), Expect = e-159
Identities = 318/479 (66%), Positives = 345/479 (71%), Gaps = 30/479 (6%)
Query: 6 RGRYPPGI--------------GLGRGGSGGGGGGLTSNSNTGFQQRPHHQYQQQQQYVQ 51
R RYPPG G G GG G GGGG N G+ R QQQ Y
Sbjct: 5 RARYPPGYTSGGGGGGGGGGGGGRGNGGGGFGGGGGGGGGNHGYYGRGPQPQPQQQHY-- 62
Query: 52 RHMMQNQHQQHYQNQQQNQQQNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEANDS 111
H Q HQ +Q QQQ+ Q+N QQQQ WLRR+Q + V Q EA DS
Sbjct: 63 HHQAQQLHQ--HQQQQQHAQRNSSSQQQQ-WLRRDQATAAAASGEVA-ARTAAQLEAVDS 118
Query: 112 SSQDWKARLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESI 171
SS+DWKA+L LP DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESI
Sbjct: 119 SSEDWKAQLNLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESI 178
Query: 172 PIALTGSDILARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKEL 231
PIALTGSDILARAKNGTGKTAAF IPALEKID + N IQVVILVPTRELALQTSQVCKEL
Sbjct: 179 PIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKEL 238
Query: 232 GKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEA 291
GK+L IQVMV+TGGTSLKDDIMRLYQPVHLLVGTPGRILDL +KG+CVLKDCSMLVMDEA
Sbjct: 239 GKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEA 298
Query: 292 DKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKG 351
DKLL+PEFQPSIEQLI FLP RQ+LMFSATFPVTVKDFK++YL +PY+INLMDELTLKG
Sbjct: 299 DKLLAPEFQPSIEQLIHFLPANRQLLMFSATFPVTVKDFKEKYLPRPYVINLMDELTLKG 358
Query: 352 ITQFYAFVEERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSC-- 409
ITQ+YAFVEERQKVHCLNTLF K I+ + F S E ++ YSC
Sbjct: 359 ITQYYAFVEERQKVHCLNTLFLKL---QINQSIIFCNS--VNRVELLAKKITELGYSCFY 413
Query: 410 ---KDVARPP**SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRV 465
K + F + LFTRGI IQAVNVVINFDFPK SETYLHR+
Sbjct: 414 IHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIGIQAVNVVINFDFPKTSETYLHRI 472
>ref|XP_629938.1| hypothetical protein DDB0184074 [Dictyostelium discoideum]
gi|60463332|gb|EAL61523.1| hypothetical protein
DDB0184074 [Dictyostelium discoideum]
Length = 423
Score = 509 bits (1311), Expect = e-143
Identities = 274/449 (61%), Positives = 331/449 (73%), Gaps = 34/449 (7%)
Query: 69 NQQQNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEANDSSSQDWKARLKLPPADTR 128
N QQN+ QQ QQ +++V++ +WK++LKLPP D R
Sbjct: 2 NSQQNKLPQQPQQ----------PPSSIVDD--------------DNWKSQLKLPPRDER 37
Query: 129 YRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGT 188
+TEDVTAT+GN+F+D LKR+LL GI+EKG+ +PSPIQE++IPIAL G DI+ARAKNGT
Sbjct: 38 RQTEDVTATEGNDFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGT 97
Query: 189 GKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSL 248
GKTA+F IPALEK D ++IQV+ILVPTRELALQTSQVCKELGK++ +QVM +TGGTSL
Sbjct: 98 GKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSL 157
Query: 249 KDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQ 308
KDDIMRLY PVH+LV TPGR+LDLA+K V L +C ++MDEADKLLS EFQP +EQLI
Sbjct: 158 KDDIMRLYNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLLSQEFQPLVEQLIN 217
Query: 309 FLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCL 368
FLP RQIL+FSATFPVTVK FK+ YL++ + INLM+ELTLKG+TQ+YAFVEERQK+HCL
Sbjct: 218 FLPQQRQILLFSATFPVTVKSFKEHYLQQAFEINLMEELTLKGVTQYYAFVEERQKIHCL 277
Query: 369 NTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSC-----KDVARPP**SFPRL 423
NTLFSK I+ + F S E ++ YSC K V F
Sbjct: 278 NTLFSKL---QINQSIIFCNS--VNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFHDF 332
Query: 424 PQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITY 483
+ LFTRGIDIQ VNVVINFDFPK+SETYLHR+GRSGRFGHLGLA+NLITY
Sbjct: 333 RNGACRNLVSSDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITY 392
Query: 484 EDRFNLYRIEQELGTEIKQIPPFIDQAIY 512
EDRF+LY+IEQELGTEIK IPP ID+++Y
Sbjct: 393 EDRFSLYKIEQELGTEIKPIPPVIDKSLY 421
>emb|CAH79576.1| ATP-dependent RNA helicase, putative [Plasmodium chabaudi]
Length = 429
Score = 501 bits (1291), Expect = e-140
Identities = 271/442 (61%), Positives = 321/442 (72%), Gaps = 30/442 (6%)
Query: 86 NQLGGGTDTNVVEEVEKTVQSEANDSSSQDWKARLKLPPADTRYRTEDVTATKGNEFEDY 145
N + +TN + + E N + WK ++ P D RY+TEDVT TKGNEFEDY
Sbjct: 2 NCVASNANTNALNNSNNLNKIEDNVIFDEAWKKKILEPLKDPRYKTEDVTKTKGNEFEDY 61
Query: 146 FLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKIDQD 205
FLKRELLMGI+EKG+E+PSPIQEESIP+AL G +ILARAKNGTGKTAAF+IP LEK +
Sbjct: 62 FLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLEKCNTH 121
Query: 206 NNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGT 265
N IQ +ILVPTRELALQTS + KELGKH++IQ MVTTGGTSL++DIMRLY VH+L GT
Sbjct: 122 KNFIQGLILVPTRELALQTSAMIKELGKHMKIQCMVTTGGTSLREDIMRLYNAVHILCGT 181
Query: 266 PGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPV 325
PGRILDLA K V L C ++VMDEADKLLSPEFQP +E+L++FLP +QILM+SATFPV
Sbjct: 182 PGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQILMYSATFPV 241
Query: 326 TVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKAANKPIHHLLQ 385
TVK+F+ YL + INLMDELTLKGITQ+YAFV+ERQKVHCLNTLF+K I+ +
Sbjct: 242 TVKEFRQIYLSDAHEINLMDELTLKGITQYYAFVKERQKVHCLNTLFAKL---QINQAII 298
Query: 386 FGKSS*TPC*ENH*TRVFMFLYSCKDVARPP**SFPRLPQW---------------CMQE 430
F C N TRV + ++ R+ Q C+
Sbjct: 299 F-------C--NSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVS 349
Query: 431 SRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLY 490
S LFTRGIDIQ+VNVVINFDFPKNSETYLHR+GRSGR+GHLGLA+NLITYEDRFNLY
Sbjct: 350 SD---LFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITYEDRFNLY 406
Query: 491 RIEQELGTEIKQIPPFIDQAIY 512
+IE ELGTEI+ IP ID +IY
Sbjct: 407 KIELELGTEIQPIPNEIDPSIY 428
>ref|NP_473317.1| ATP-dependent RNA helicase, putative [Plasmodium falciparum 3D7]
gi|4493972|emb|CAB39031.1| ATP-dependent RNA helicase,
putative; putative ATP-dependent RNA Helicase
[Plasmodium falciparum 3D7]
Length = 433
Score = 497 bits (1280), Expect = e-139
Identities = 267/444 (60%), Positives = 322/444 (72%), Gaps = 30/444 (6%)
Query: 84 RRNQLGGGTDTNVVEEVEKTVQSEANDSSSQDWKARLKLPPADTRYRTEDVTATKGNEFE 143
+ N +TN + + + N ++WK ++ P D RY+TEDVT TKGNEFE
Sbjct: 4 KTNCTNSNANTNTLNSSSNYNKIDDNIILDEEWKKKILEPLKDLRYKTEDVTKTKGNEFE 63
Query: 144 DYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKID 203
DYFLKRELLMGI+EKG+E+PSPIQEESIP+AL G +ILARAKNGTGKTAAF+IP LEK +
Sbjct: 64 DYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLEKCN 123
Query: 204 QDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLV 263
N IQ +ILVPTRELALQTS + KELGKH+++Q MVTTGGTSL++DIMRLY VH+L
Sbjct: 124 THKNFIQGLILVPTRELALQTSAMIKELGKHMKVQCMVTTGGTSLREDIMRLYNVVHILC 183
Query: 264 GTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATF 323
GTPGRILDLA K V L C ++VMDEADKLLSPEFQP +E+L++FLP +QILM+SATF
Sbjct: 184 GTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQILMYSATF 243
Query: 324 PVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKAANKPIHHL 383
PVTVK+F+ YL + INLMDELTLKGITQ+YAFV+ERQKVHCLNTLF+K I+
Sbjct: 244 PVTVKEFRAIYLSDAHEINLMDELTLKGITQYYAFVKERQKVHCLNTLFAKL---QINQA 300
Query: 384 LQFGKSS*TPC*ENH*TRVFMFLYSCKDVARPP**SFPRLPQW---------------CM 428
+ F C N TRV + ++ R+ Q C+
Sbjct: 301 IIF-------C--NSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCL 351
Query: 429 QESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFN 488
S LFTRGIDIQ+VNVVINFDFPKNSETYLHR+GRSGR+GHLGLA+NLIT+EDRFN
Sbjct: 352 VSSD---LFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITFEDRFN 408
Query: 489 LYRIEQELGTEIKQIPPFIDQAIY 512
LY+IE ELGTEI+ IP ID ++Y
Sbjct: 409 LYKIEVELGTEIQPIPNEIDPSLY 432
>gb|EAA21264.1| ATP-dependent RNA Helicase [Plasmodium yoelii yoelii]
Length = 477
Score = 495 bits (1275), Expect = e-138
Identities = 271/451 (60%), Positives = 322/451 (71%), Gaps = 37/451 (8%)
Query: 84 RRNQLGGGTDTNVVEEVEKTVQSEANDSSSQDWKARLKLPPADTRYRTEDVTATKGNEFE 143
+ N + +TN + + E N + WK ++ P D RY+TEDVT TKGNEFE
Sbjct: 41 KTNCVASNANTNALNNSNNLNKIEDNVIFDEAWKKKILEPLKDPRYKTEDVTKTKGNEFE 100
Query: 144 DYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKID 203
DYFLKRELLMGI+EKG+E+PSPIQEESIP+AL G +ILARAKNGTGKTAAF+IP LEK +
Sbjct: 101 DYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLEKCN 160
Query: 204 QDNNIIQ-------VVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLY 256
N IQ +ILVPTRELALQTS + KELGKH++IQ MVTTGGTSL++DIMRLY
Sbjct: 161 THKNFIQGKTIQKISLILVPTRELALQTSAMIKELGKHMKIQCMVTTGGTSLREDIMRLY 220
Query: 257 QPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQI 316
VH+L GTPGRILDLA K V L C ++VMDEADKLLSPEFQP +E+L++FLP +QI
Sbjct: 221 NAVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQI 280
Query: 317 LMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKAA 376
LM+SATFPVTVK+F+ YL + INLMDELTLKGITQ+YAFV+ERQKVHCLNTLF+K
Sbjct: 281 LMYSATFPVTVKEFRQIYLSDAHEINLMDELTLKGITQYYAFVKERQKVHCLNTLFAKL- 339
Query: 377 NKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSCKDVARPP**SFPRLPQW---------- 426
I+ + F C N TRV + ++ R+ Q
Sbjct: 340 --QINQAIIF-------C--NSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFR 388
Query: 427 -----CMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLI 481
C+ S LFTRGIDIQ+VNVVINFDFPKNSETYLHR+GRSGR+GHLGLA+NLI
Sbjct: 389 NGACRCLVSSD---LFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLI 445
Query: 482 TYEDRFNLYRIEQELGTEIKQIPPFIDQAIY 512
TYEDRFNLY+IE ELGTEI+ IP ID +IY
Sbjct: 446 TYEDRFNLYKIELELGTEIQPIPNEIDPSIY 476
>gb|EAK84197.1| hypothetical protein UM03329.1 [Ustilago maydis 521]
gi|49073452|ref|XP_400944.1| hypothetical protein
UM03329.1 [Ustilago maydis 521]
Length = 534
Score = 494 bits (1271), Expect = e-138
Identities = 268/395 (67%), Positives = 304/395 (76%), Gaps = 10/395 (2%)
Query: 122 LPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDIL 181
L P R +TEDV TKGNEFEDYFLKRELLMGI+E GFERPSPIQEE+IPIALTG DIL
Sbjct: 129 LLPHHERPQTEDVLNTKGNEFEDYFLKRELLMGIFEAGFERPSPIQEEAIPIALTGRDIL 188
Query: 182 ARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMV 241
ARAKNGTGKTAA+ IP+LEK++ N IQ V+LVPTRELALQTSQV K LGKHL ++VMV
Sbjct: 189 ARAKNGTGKTAAYVIPSLEKLNTKKNKIQAVLLVPTRELALQTSQVAKTLGKHLGVEVMV 248
Query: 242 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQP 301
TTGGT+L+DDI+RL Q VHLLVGTPGRILDLA KGV L C+ VMDEADKLLSPEF P
Sbjct: 249 TTGGTTLRDDILRLGQTVHLLVGTPGRILDLAGKGVADLSQCTTFVMDEADKLLSPEFTP 308
Query: 302 SIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEE 361
+EQL+ FLP RQ+++FSATFP+ VKDFKDR + KPY INLMDELTL+G+TQ+YAFVEE
Sbjct: 309 VMEQLLSFLPKERQVMLFSATFPLIVKDFKDRNMVKPYEINLMDELTLRGVTQYYAFVEE 368
Query: 362 RQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSC-----KDVARPP 416
RQKVHCLNTLFSK I+ + F S T E ++ YSC K +
Sbjct: 369 RQKVHCLNTLFSKL---QINQSIIFCNS--TNRVELLAKKITELGYSCFYSHAKMLQAHR 423
Query: 417 **SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGL 476
F + L TRGIDIQAVNVVINFDFPKN+ETYLHR+GRSGRFGHLGL
Sbjct: 424 NRVFHDFRNGACRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGL 483
Query: 477 AVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAI 511
A+NLITYEDRFNLYRIEQELGTEI+ IP ID+ +
Sbjct: 484 AINLITYEDRFNLYRIEQELGTEIQPIPSNIDKRL 518
>gb|EAL93020.1| ATP dependent RNA helicase (Dhh1), putative [Aspergillus fumigatus
Af293]
Length = 507
Score = 493 bits (1268), Expect = e-138
Identities = 264/429 (61%), Positives = 313/429 (72%), Gaps = 26/429 (6%)
Query: 96 VVEEVEKTVQSEANDSSSQDWKARLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGI 155
+ ++ T EAN S WK +L +P D R +TEDVTATKG EFED+++KREL+MGI
Sbjct: 5 LANQLNNTNLGEAN--SELRWKEQLNMPAKDARPQTEDVTATKGLEFEDFYIKRELMMGI 62
Query: 156 YEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILV 215
+E GFE+PSPIQEE+IP+ALTG DILARAKNGTGKTAAF IP LE+I+ + Q +ILV
Sbjct: 63 FEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILV 122
Query: 216 PTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKK 275
PTRELALQTSQVCK LGKHL I VMVTTGGT L DDI+RL VH+LVGTPGR+LDLA K
Sbjct: 123 PTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASK 182
Query: 276 GVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYL 335
GV L +C VMDEADKLLSPEF P IEQL+ F P RQ+++FSATFP+ VK FKD+++
Sbjct: 183 GVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQVMLFSATFPLIVKSFKDKHM 242
Query: 336 RKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC* 395
R PY INLMDELTL+GITQ+YAFVEE+QKVHCLNTLFSK I+ + F S+
Sbjct: 243 RNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKL---QINQSIIFCNST----- 294
Query: 396 ENH*TRVFMFLYSCKDVARPP**SFPRLPQWCMQE----------SRLYC--LFTRGIDI 443
RV + ++ S R+ Q L C L TRGIDI
Sbjct: 295 ----NRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDI 350
Query: 444 QAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 503
QAVNVVINFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI ++DRFNLY+IEQELGTEI+ I
Sbjct: 351 QAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQELGTEIQPI 410
Query: 504 PPFIDQAIY 512
P ID+ +Y
Sbjct: 411 PQNIDKKLY 419
>emb|CAG78499.1| YlDHH1 [Yarrowia lipolytica CLIB99] gi|50556564|ref|XP_505690.1|
YlDHH1 [Yarrowia lipolytica]
Length = 522
Score = 491 bits (1263), Expect = e-137
Identities = 261/403 (64%), Positives = 306/403 (75%), Gaps = 10/403 (2%)
Query: 115 DWKARLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIA 174
+WK L +P DTR++TEDVTATKG FED+FLKRELLMGI+E GFE PSPIQEE+IPIA
Sbjct: 3 EWKESLNVPKKDTRHKTEDVTATKGTGFEDFFLKRELLMGIFEAGFENPSPIQEEAIPIA 62
Query: 175 LTGSDILARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKH 234
L G DILARAKNGTGKTAAF IPAL++++ N IQ +I+VPTRELALQTSQVCK LGKH
Sbjct: 63 LAGRDILARAKNGTGKTAAFVIPALQQVNPKVNKIQALIMVPTRELALQTSQVCKTLGKH 122
Query: 235 LQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKL 294
L I+VMVTTGGT+L+DDIMRL VH+LVGTPGR+LDLA KGV L + M +MDEADKL
Sbjct: 123 LGIKVMVTTGGTNLRDDIMRLEDTVHVLVGTPGRVLDLAGKGVADLSESPMFIMDEADKL 182
Query: 295 LSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQ 354
LSP+F P IEQ++ F P RQIL+FSATFP+TVK F DR L KPY INLMDELTL+GITQ
Sbjct: 183 LSPDFTPIIEQVLHFFPEDRQILLFSATFPLTVKAFMDRNLHKPYEINLMDELTLRGITQ 242
Query: 355 FYAFVEERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSC----- 409
+YAFV+E+QK+HCLNTLFSK I+ + F S T E ++ YSC
Sbjct: 243 YYAFVDEKQKLHCLNTLFSKL---DINQSIIFCNS--TVRVELLARKITELGYSCYYSHA 297
Query: 410 KDVARPP**SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSG 469
K + F + L TRGIDIQAVNVVINFDFPKN+ETYLHR+GRSG
Sbjct: 298 KMIQSHRNRVFHEFRNGTCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG 357
Query: 470 RFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIY 512
RFGHLG+A+NLI + DR+NLY+IEQELGTEIK IP ID+ +Y
Sbjct: 358 RFGHLGIAINLINWNDRYNLYKIEQELGTEIKPIPAQIDKNLY 400
>emb|CAA22882.1| ste13 [Schizosaccharomyces pombe] gi|19113116|ref|NP_596324.1|
hypothetical protein SPBC776.09 [Schizosaccharomyces
pombe 972h-] gi|1076910|pir||S46654 probable
ATP-dependent RNA helicase ste13p - fission yeast
(Schizosaccharomyces pombe)
gi|1174456|sp|Q09181|STE13_SCHPO Putative ATP-dependent
RNA helicase ste13 gi|703066|dbj|BAA06178.1| RNA
helicase [Schizosaccharomyces pombe]
Length = 485
Score = 486 bits (1252), Expect = e-136
Identities = 258/418 (61%), Positives = 311/418 (73%), Gaps = 12/418 (2%)
Query: 100 VEKTVQSEANDSSSQDWKARLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKG 159
++K + ND S +K ++K P D R +TEDVT T+G EFEDY+LKRELLMGI+E G
Sbjct: 6 IQKLENANLNDRES--FKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAG 63
Query: 160 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRE 219
FERPSPIQEESIPIAL+G DILARAKNGTGKTAAF IP+LEK+D + IQ +ILVPTRE
Sbjct: 64 FERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRE 123
Query: 220 LALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCV 279
LALQTSQVCK LGKH+ ++VMVTTGGT+L+DDI+RL VH++VGTPGR+LDLA KGV
Sbjct: 124 LALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVAD 183
Query: 280 LKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPY 339
+C+ VMDEADKLLSPEF P IEQL+ + P RQI ++SATFP+ VK+F D++L KPY
Sbjct: 184 FSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPY 243
Query: 340 IINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH* 399
INLMDELTL+G+TQ+YAFV+E QKVHCLNTLFSK I+ + F S T E
Sbjct: 244 EINLMDELTLRGVTQYYAFVDESQKVHCLNTLFSKL---QINQSIIFCNS--TNRVELLA 298
Query: 400 TRVFMFLYSC-----KDVARPP**SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDF 454
++ YSC K + F + L TRGIDIQAVNVVINFDF
Sbjct: 299 KKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDF 358
Query: 455 PKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIY 512
PKN+ETYLHR+GRSGRFGH GLA++ I++ DRFNLYRIE ELGTEI+ IPP ID ++Y
Sbjct: 359 PKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENELGTEIQPIPPSIDPSLY 416
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.140 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 885,473,665
Number of Sequences: 2540612
Number of extensions: 39016893
Number of successful extensions: 783057
Number of sequences better than 10.0: 9575
Number of HSP's better than 10.0 without gapping: 8067
Number of HSP's successfully gapped in prelim test: 1654
Number of HSP's that attempted gapping in prelim test: 428719
Number of HSP's gapped (non-prelim): 102095
length of query: 513
length of database: 863,360,394
effective HSP length: 132
effective length of query: 381
effective length of database: 527,999,610
effective search space: 201167851410
effective search space used: 201167851410
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 77 (34.3 bits)
Medicago: description of AC123899.6