BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC123593.2 + phase: 0 /pseudo
(199 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa (japonica cultiva... 49 6e-05
gb|AAX96614.1| retrotransposon protein, putative, unclassified [... 45 0.002
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 44 0.003
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 44 0.003
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 44 0.003
ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultiv... 43 0.006
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 42 0.008
gb|AAM94327.1| putative reverse transcriptase [Sorghum bicolor] 42 0.008
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 42 0.010
emb|CAE04648.2| OSJNBa0061G20.4 [Oryza sativa (japonica cultivar... 42 0.010
ref|XP_470224.1| Putative retroelement [Oryza sativa] gi|1545160... 41 0.017
gb|AAY23271.1| retrotransposon protein, putative, unclassified [... 40 0.038
ref|XP_475426.1| putative non-LTR retroelement reverse transcrip... 39 0.11
emb|CAA73819.1| reverse transcriptase [Antirrhinum majus] gi|748... 39 0.11
ref|XP_471543.1| OSJNBa0071G03.15 [Oryza sativa (japonica cultiv... 38 0.15
emb|CAD40197.1| OSJNBb0043H09.5 [Oryza sativa (japonica cultivar... 38 0.15
gb|AAV25285.1| hypothetical protein [Oryza sativa (japonica cult... 38 0.15
gb|AAW56921.1| hypothetical protein [Oryza sativa (japonica cult... 38 0.15
ref|NP_912588.1| Putative non-LTR retroelement reverse transcrip... 37 0.42
ref|XP_463298.1| putative non-LTR retroelement reverse transcrip... 36 0.72
>emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa (japonica cultivar-group)]
Length = 779
Score = 49.3 bits (116), Expect = 6e-05
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 45 RLGLCGKRVGWIKDRVFGGNVSILVNGSP-----TEEISKQGDHLTPFLCSRRF**VDVQ 99
R G C K +GWIK G+V+I +NG T + +QGD L+P + +
Sbjct: 318 RKGFCEKWIGWIKAATTKGSVAININGEVDQFFRTHKGVRQGDPLSPLMFYLVADALPEM 377
Query: 100 CGESK*V*GF*GC*RR--DGDFTS-SYADDTLCIGETTVENLYTLKAMLREFEMASSLKV 156
++K G G T YADDT+ + EN+ T+K +L +E S LK+
Sbjct: 378 LNKAKEAGHLQGLVPHLVPGGLTHLQYADDTILFMTNSEENIVTVKFLLYCYEAMSGLKI 437
Query: 157 NFLK 160
NF K
Sbjct: 438 NFQK 441
>gb|AAX96614.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1427
Score = 44.7 bits (104), Expect = 0.002
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 21/125 (16%)
Query: 46 LGLCGKRVGWIKDRVFGGNVSILVNGSPTEEIS-----KQGDHLTPFLCSRRF**VDVQC 100
+G +GWI+ + S+LVNG P + +QGD L+P L + V
Sbjct: 404 MGFSATWLGWIRKIFSFASSSVLVNGIPGKNFHCKRGVRQGDPLSPLLFVLGAELLQVIL 463
Query: 101 GESK*V*GF*GC*RRDGDFTSS-----YADDTLCIGETTVENLYTLKAMLREFEMASSLK 155
+ DF + YADDTL + + + L+TLKA+ + F++ + LK
Sbjct: 464 SKPF-----------PSDFDPNFPIVQYADDTLFYLKASSKELFTLKALWQTFQLGTGLK 512
Query: 156 VNFLK 160
VNF K
Sbjct: 513 VNFNK 517
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 43.9 bits (102), Expect = 0.003
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 32/134 (23%)
Query: 47 GLCGKRVGWIKDRVFGGNVSILVNGSPTEEIS-----KQGDHLTPFLCSRRF**VDVQCG 101
G C K +GWI V + S+L+NGSP I+ +QGD L+P+L + CG
Sbjct: 979 GFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLF--------ILCG 1030
Query: 102 E--SK*V*GF*GC*RRDGDFTS-------------SYADDTLCIGETTVENLYTLKAMLR 146
+ S + G GD +ADD+L + V N LK +
Sbjct: 1031 DILSHLINGR----ASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFD 1086
Query: 147 EFEMASSLKVNFLK 160
+E S K+N K
Sbjct: 1087 VYEYYSGQKINVQK 1100
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 43.9 bits (102), Expect = 0.003
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 32/134 (23%)
Query: 47 GLCGKRVGWIKDRVFGGNVSILVNGSPTEEIS-----KQGDHLTPFLCSRRF**VDVQCG 101
G C K +GWI V + S+L+NGSP I+ +QGD L+P+L + CG
Sbjct: 753 GFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLF--------ILCG 804
Query: 102 E--SK*V*GF*GC*RRDGDFTS-------------SYADDTLCIGETTVENLYTLKAMLR 146
+ S + G GD +ADD+L + V N LK +
Sbjct: 805 DILSHLINGR----ASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFD 860
Query: 147 EFEMASSLKVNFLK 160
+E S K+N K
Sbjct: 861 VYEYYSGQKINVQK 874
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 43.9 bits (102), Expect = 0.003
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 24/130 (18%)
Query: 47 GLCGKRVGWIKDRVFGGNVSILVNGSPTEEIS-----KQGDHLTPF---LCS---RRF** 95
G C K +GWI V + S+L+NGSP IS +QGD L+P+ LC
Sbjct: 218 GFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIK 277
Query: 96 VDVQCGESK*V*GF*GC*RRDGDFTSS-----YADDTLCIGETTVENLYTLKAMLREFEM 150
V G+ + V R G+ + +ADD+L + V N LK + +E
Sbjct: 278 VKASSGDIRGV--------RIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEY 329
Query: 151 ASSLKVNFLK 160
S K+N K
Sbjct: 330 YSGQKINVQK 339
>ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultivar-group)]
gi|39546208|emb|CAE04633.3| OSJNBa0028I23.15 [Oryza
sativa (japonica cultivar-group)]
Length = 593
Score = 42.7 bits (99), Expect = 0.006
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 55 WIKDRVFGGNVSILVNGS-----PTEEISKQGDHLTPFLCSRRF**VDV---QCGESK*V 106
WI V GG+V++ VN T++ +QGD L+P L + + V + E +
Sbjct: 56 WIDQVVRGGSVAVKVNDEIGNFFQTKKGLRQGDPLSPLLFNLVADMLAVLIQRTSEHGKI 115
Query: 107 *GF*GC*RRDGDFTSSYADDTLCIGETTVENLYTLKAMLREFEMASSLKVNFLK 160
G DG YADDT+ E +E+ LK +L FE S LK+NF K
Sbjct: 116 HGVIPHLVDDGLSILQYADDTILFMEHDLEDAKNLKLVLSAFERLSGLKINFHK 169
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 42.4 bits (98), Expect = 0.008
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 45 RLGLCGKRVGWIKDRVFGGNVSILVNGSPTEEIS-----KQGDHLTPFL---CSRRF**V 96
++G K WI + SIL+NG P I +QGD ++P+L C+ +
Sbjct: 50 QMGFSEKWCNWIMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSAL 109
Query: 97 DVQCGESK*V*GF*GC*RRDGDFTSS--YADDTLCIGETTVENLYTLKAMLREFEMASSL 154
++K + GF R+G S +A D+L + T+E TL +L+ +E AS
Sbjct: 110 IQASIKAKQLHGFKAS--RNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQ 167
Query: 155 KVNFLK 160
VNF K
Sbjct: 168 AVNFQK 173
>gb|AAM94327.1| putative reverse transcriptase [Sorghum bicolor]
Length = 1998
Score = 42.4 bits (98), Expect = 0.008
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 47 GLCGKRVGWIKDRVFGGNVSILVNGSPTEEIS-----KQGDHLTP--FLCSRRF**VDVQ 99
G K + W+K G ++L+NG+P + I +QGD L+P F+ + F +
Sbjct: 1408 GFGQKWLNWMKSIFTSGTSNVLLNGTPGKTIHCLRGVRQGDPLSPLLFVLAADFLQSLIN 1467
Query: 100 CGESK*V*GF*GC*RRDGDFTS-SYADDTLCIGETTVENLYTLKAMLREFEMASSLKVNF 158
+ + + + DF YADDTL I E L LK+++ F A+ LKVN
Sbjct: 1468 KAKCMDLLKLPIPMQTNQDFPIIQYADDTLIIAEGDTRQLLILKSIINTFSEATGLKVNL 1527
Query: 159 LK 160
K
Sbjct: 1528 QK 1529
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 42.0 bits (97), Expect = 0.010
Identities = 33/120 (27%), Positives = 53/120 (43%), Gaps = 10/120 (8%)
Query: 47 GLCGKRVGWIKDRVFGGNVSILVNGSPTEEIS-----KQGDHLTPFLCSRRF**VDVQCG 101
G + + W+K GG +++ +NG + +QGD L+P L + +
Sbjct: 141 GFSDRWIQWVKMATIGGKMAVNINGEVKDFFKTYRGVRQGDPLSPLLFNLVADALSEMLN 200
Query: 102 ESK*V*GF*GC*RRDGDFTS-SYADDTLCIGETTVENLYTLKAMLREFEMASSLKVNFLK 160
+K G T YADDT+ T EN+ T+K +L +E S LK+N+ K
Sbjct: 201 NAKQAVPH----LVPGGLTHLQYADDTILFMTNTEENIVTVKFLLYCYEAMSGLKINYQK 256
>emb|CAE04648.2| OSJNBa0061G20.4 [Oryza sativa (japonica cultivar-group)]
gi|50923465|ref|XP_472093.1| OSJNBa0061G20.4 [Oryza
sativa (japonica cultivar-group)]
Length = 632
Score = 42.0 bits (97), Expect = 0.010
Identities = 20/38 (52%), Positives = 29/38 (75%)
Query: 123 YADDTLCIGETTVENLYTLKAMLREFEMASSLKVNFLK 160
YADDTL + + + L+TLKA+L+ F++ +SLKVNF K
Sbjct: 147 YADDTLPYLKASGKELFTLKALLQTFQLGTSLKVNFNK 184
>ref|XP_470224.1| Putative retroelement [Oryza sativa] gi|15451602|gb|AAK98726.1|
Putative retroelement [Oryza sativa]
Length = 427
Score = 41.2 bits (95), Expect = 0.017
Identities = 36/114 (31%), Positives = 55/114 (47%), Gaps = 8/114 (7%)
Query: 55 WIKDRVFGGNVSILVNGS-----PTEEISKQGDHLTPFLCSRRF**VDV---QCGESK*V 106
WI V GG V+I VN T + +QGD L+P L + + + + + +
Sbjct: 252 WILKVVKGGKVAIRVNYQIGHYFTTHKGLRQGDPLSPLLFNIAADALTLLIKRAEQQGLI 311
Query: 107 *GF*GC*RRDGDFTSSYADDTLCIGETTVENLYTLKAMLREFEMASSLKVNFLK 160
G R+G YADDT+C+ + ++E LK ++ FE + LKVNF K
Sbjct: 312 KGLGMDVMREGVDILQYADDTICLIQDSLEYAKNLKFIMCIFEQLTGLKVNFHK 365
>gb|AAY23271.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 885
Score = 40.0 bits (92), Expect = 0.038
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 28/132 (21%)
Query: 47 GLCGKRVGWIKDRVFGGNVSILVNGS-----PTEEISKQGDHLTPFLCSRRF**VDVQCG 101
G K + W++ + GG+V + VN T++ +QGD L+P L + + V
Sbjct: 595 GFSPKWISWVESFISGGSVVVKVNDEVGHFFQTKKGVRQGDPLSPILFNIIADMLTVLIN 654
Query: 102 ESK*V*GF*GC*RRDGDFTS-------------SYADDTLCIGETTVENLYTLKAMLREF 148
+K DG T YADDT+ ++ +K +L F
Sbjct: 655 RAK----------EDGQITGVVPHLINDDLSILQYADDTVLFMGHDLQKARNMKLLLFVF 704
Query: 149 EMASSLKVNFLK 160
E S LK+NF K
Sbjct: 705 EQLSGLKINFHK 716
>ref|XP_475426.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|46576009|gb|AAT01370.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1614
Score = 38.5 bits (88), Expect = 0.11
Identities = 38/134 (28%), Positives = 53/134 (39%), Gaps = 28/134 (20%)
Query: 45 RLGLCGKRVGWIKDRVFGGNVSILVNGSPTEEIS-----KQGDHLTPFLCSRRF**VDVQ 99
R G K V WIK V GG V I +NG T+ +QGD L+P L + +
Sbjct: 1222 RKGFPSKWVNWIKTCVMGGRVCININGERTDFFRTFRGLRQGDPLSPLLFNLISDALAAM 1281
Query: 100 CGESK*V*GF*GC*RRDGDFTS-------------SYADDTLCIGETTVENLYTLKAMLR 146
+K R+G + YADDT+ + + K +L
Sbjct: 1282 LDSAK----------REGVLSGLVPDIFPGGITHLQYADDTVLFVANDDKQIVATKFILY 1331
Query: 147 EFEMASSLKVNFLK 160
FE + LKVN+ K
Sbjct: 1332 CFEEMAVLKVNYHK 1345
>emb|CAA73819.1| reverse transcriptase [Antirrhinum majus] gi|7489309|pir||T17102
RNA-directed DNA polymerase (EC 2.7.7.49) (clone AmLi2)
- garden snapdragon (fragment)
Length = 136
Score = 38.5 bits (88), Expect = 0.11
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 46 LGLCGKRVGWIKDRVFGGNVSILVNGSPTEEIS-----KQGDHLT 85
LG C WI + + G +S+LVNGSPT+E +QGD L+
Sbjct: 92 LGFCATWRKWISECLHSGTISVLVNGSPTDEFRAQRGLRQGDPLS 136
>ref|XP_471543.1| OSJNBa0071G03.15 [Oryza sativa (japonica cultivar-group)]
gi|38346611|emb|CAD39801.2| OSJNBa0071G03.15 [Oryza
sativa (japonica cultivar-group)]
gi|38346419|emb|CAD40206.2| OSJNBa0019J05.4 [Oryza
sativa (japonica cultivar-group)]
Length = 637
Score = 38.1 bits (87), Expect = 0.15
Identities = 16/38 (42%), Positives = 27/38 (70%)
Query: 123 YADDTLCIGETTVENLYTLKAMLREFEMASSLKVNFLK 160
YADDTL + +T+ + ++ KA+L F +++ LKVN+ K
Sbjct: 549 YADDTLILLKTSQKEIFCFKALLNMFALSTGLKVNYAK 586
>emb|CAD40197.1| OSJNBb0043H09.5 [Oryza sativa (japonica cultivar-group)]
gi|50921821|ref|XP_471271.1| OSJNBb0043H09.5 [Oryza
sativa (japonica cultivar-group)]
Length = 858
Score = 38.1 bits (87), Expect = 0.15
Identities = 33/119 (27%), Positives = 55/119 (45%), Gaps = 19/119 (15%)
Query: 55 WIKDRVFGGNVSILVNGSPTEEIS-----KQGDHLTPFLCSRRF**VDVQCGE------- 102
WI D + + ++L+NG P + KQGD ++P L + +
Sbjct: 450 WISDLLTTSSSAVLLNGIPGKNFKCQKGVKQGDPISPLLFVLTADLLQSMINKAHDTGIL 509
Query: 103 SK*V*GF*GC*RRDGDFTS-SYADDTLCIGETTVENLYTLKAMLREFEMASSLKVNFLK 160
SK + R D F YADDTL I + + +++LK +L+ F ++ L++NF K
Sbjct: 510 SKPIP------RPDTKFPIIQYADDTLIIMKACQKEIFSLKGILQSFASSTGLRINFHK 562
>gb|AAV25285.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 720
Score = 38.1 bits (87), Expect = 0.15
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 123 YADDTLCIGETTVENLYTLKAMLREFEMASSLKVNFLK 160
YADDTL I + + ++ LKA+L + M + LK+NF K
Sbjct: 388 YADDTLIIMKADQKEIFCLKALLNTYAMCTGLKINFHK 425
>gb|AAW56921.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 552
Score = 38.1 bits (87), Expect = 0.15
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 123 YADDTLCIGETTVENLYTLKAMLREFEMASSLKVNFLK 160
YADDTL I + + ++ LKA+L + M + LK+NF K
Sbjct: 220 YADDTLIIMKADQKEIFCLKALLNTYAMCTGLKINFHK 257
>ref|NP_912588.1| Putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|22748339|gb|AAN05341.1|
Putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 603
Score = 36.6 bits (83), Expect = 0.42
Identities = 32/107 (29%), Positives = 51/107 (46%), Gaps = 8/107 (7%)
Query: 62 GGNVSILVNGS-----PTEEISKQGDHLTPFLCSRRF**VDVQCGESK*V*GF*GC*RR- 115
GG+V++ VN T++ +QGD L+P L + + + +K F G
Sbjct: 66 GGSVAVKVNDHIGNFFQTKKGLRQGDPLSPILFNLVADMLSILIQRAKDQGRFQGVIPHL 125
Query: 116 --DGDFTSSYADDTLCIGETTVENLYTLKAMLREFEMASSLKVNFLK 160
+G YADDT+ E ++ + LK +L FE + LK+NF K
Sbjct: 126 VDNGLSILQYADDTILFMEHDLDEVKNLKLVLSTFEKLAGLKINFHK 172
>ref|XP_463298.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)]
Length = 463
Score = 35.8 bits (81), Expect = 0.72
Identities = 17/38 (44%), Positives = 24/38 (62%)
Query: 123 YADDTLCIGETTVENLYTLKAMLREFEMASSLKVNFLK 160
YADDT+ + T EN+ TLK +L FE +K+N+ K
Sbjct: 237 YADDTILFTKATKENVLTLKFLLFCFEEMFGMKINYQK 274
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.363 0.169 0.619
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 276,133,299
Number of Sequences: 2540612
Number of extensions: 8938491
Number of successful extensions: 36083
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 36020
Number of HSP's gapped (non-prelim): 73
length of query: 199
length of database: 863,360,394
effective HSP length: 121
effective length of query: 78
effective length of database: 555,946,342
effective search space: 43363814676
effective search space used: 43363814676
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 72 (32.3 bits)
Medicago: description of AC123593.2