BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC123575.7 - phase: 0 /pseudo
(378 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK29467.1| polyprotein-like [Lycopersicon chilense] 78 5e-13
emb|CAE04890.2| OSJNBa0042I15.12 [Oryza sativa (japonica cultiva... 77 1e-12
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum] gi|1... 76 1e-12
ref|NP_916849.1| retrovirus-related pol polyprotein from transpo... 74 6e-12
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 73 1e-11
gb|AAP53866.1| putative polyprotein [Oryza sativa (japonica cult... 71 6e-11
ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cu... 67 7e-10
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 67 1e-09
ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultiv... 66 2e-09
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 66 2e-09
gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cult... 65 3e-09
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa (japonica cultivar... 64 6e-09
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 64 8e-09
ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cu... 64 8e-09
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] gi... 62 3e-08
emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana] ... 62 4e-08
ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sa... 61 6e-08
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 60 8e-08
gb|AAP53029.1| putative retrotransposon-related protein [Oryza s... 60 8e-08
ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cu... 60 8e-08
>gb|AAK29467.1| polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 77.8 bits (190), Expect = 5e-13
Identities = 42/111 (37%), Positives = 67/111 (59%), Gaps = 1/111 (0%)
Query: 5 KWNIEKFTGSND-FGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAI 63
K+ + KF G F +W+ +M+ +LIQQ +AL GK++ P + + E+++KA SAI
Sbjct: 5 KYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAASAI 64
Query: 64 VLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVE 114
L L D V+ + E +W KL++LYM+K+ T++ LK+QLY M E
Sbjct: 65 RLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDE 115
>emb|CAE04890.2| OSJNBa0042I15.12 [Oryza sativa (japonica cultivar-group)]
Length = 432
Score = 76.6 bits (187), Expect = 1e-12
Identities = 40/110 (36%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 5 KWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIV 64
K+++ KF G +FGLW+ +++ +L QQ+ +ALKG PA + + EM +A + I
Sbjct: 43 KFDLVKFDGFGNFGLWQTRVKDLLAQQEVSKALKGVK--PAKMEDDDCEEMQLQAAATIR 100
Query: 65 LCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVE 114
CL D+++ V ET +W KL++ +M+K+ T+++ LKQ+LY +M E
Sbjct: 101 RCLSDQIMYHVMEETSPKIIWEKLEAQFMSKTLTNKRYLKQKLYGLKMQE 150
>emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
gi|130582|sp|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease]
Length = 1328
Score = 76.3 bits (186), Expect = 1e-12
Identities = 39/110 (35%), Positives = 64/110 (57%)
Query: 5 KWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIV 64
K+ + KF G N F W+ +MR +LIQQ + L ++ P + + +++++A SAI
Sbjct: 5 KYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIR 64
Query: 65 LCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVE 114
L L D V+ + E +W +L+SLYM+K+ T++ LK+QLY M E
Sbjct: 65 LHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSE 114
>ref|NP_916849.1| retrovirus-related pol polyprotein from transposon TNT 1-94-like
[Oryza sativa (japonica cultivar-group)]
Length = 425
Score = 74.3 bits (181), Expect = 6e-12
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 4 SKWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAI 63
SK+ + KF G+ +F LW+++++ +L QQ +AL+ MP + + EM +A + I
Sbjct: 7 SKFEMVKFDGTGNFVLWQMRLKDLLAQQGISKALE--ETMPEKMDAGKWEEMKAQAAATI 64
Query: 64 VLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVESKTNNEATD 123
L L D V+ +V E +W+KL SLYM+KS T + LKQQLY +M E + D
Sbjct: 65 RLSLSDSVMYQVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVD 124
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 73.2 bits (178), Expect = 1e-11
Identities = 43/120 (35%), Positives = 70/120 (57%), Gaps = 5/120 (4%)
Query: 2 MDSKWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEK-TEMNDKAI 60
M +K+ IEKF G N F LWK+K++ IL + C+ A+ ++ P T +K +EMN+ A+
Sbjct: 1 MAAKFEIEKFNGKN-FSLWKLKVKAILRKDNCLAAI---SERPVDFTDDKKWSEMNEDAM 56
Query: 61 SAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVESKTNNE 120
+ + L + D VL + + +W+ L+ LY KS ++ LK++LY RM ES + E
Sbjct: 57 ADLYLSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTE 116
>gb|AAP53866.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37534554|ref|NP_921579.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 382
Score = 70.9 bits (172), Expect = 6e-11
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 4 SKWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAI 63
SK+ + KF G+ +F LW+++++ +L QQ +AL+ MP + + EM +A + I
Sbjct: 7 SKFEVVKFDGTGNFVLWQMRLKDLLAQQGISKALQ--ETMPEKIDADKWNEMKAQAAATI 64
Query: 64 VLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVESKTNNEATD 123
L L D V+ +V E +W+KL SL+M+KS T + LKQQLY ++ E + D
Sbjct: 65 RLSLSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESDLRKHVD 124
>ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475213|gb|AAT44282.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1243
Score = 67.4 bits (163), Expect = 7e-10
Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 5 KWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIV 64
K+++ F LW+VKMR +L QQ +AL G + + EK + + KAIS I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK-KRDRKAISYIH 63
Query: 65 LCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVESKT 117
L L + +L+EV +E +W KL+ + MTK T + LKQ+L+ +++ + ++
Sbjct: 64 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDES 116
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25412027|pir||G84599 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 838
Score = 66.6 bits (161), Expect = 1e-09
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query: 8 IEKFTGSNDFGLWKVKM--RIILI-------QQKCVEALKGKAQMPAHLTPAEKT---EM 55
+EK G D+ LWK K+ I L+ + + +E + A+ + LT E E
Sbjct: 8 VEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKEK 67
Query: 56 NDKAISAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVES 115
KA S ++L LG+ VLR+V +E M LD L+M KS +R LKQ+LY Y+M +S
Sbjct: 68 RGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSDS 127
Query: 116 KTNNE 120
T E
Sbjct: 128 MTIEE 132
>ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultivar-group)]
gi|38344889|emb|CAD41912.2| OSJNBa0033G05.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1181
Score = 66.2 bits (160), Expect = 2e-09
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 5 KWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIV 64
K+++ F LW+VKMR +L QQ+ +AL G + + EK + + KA+S I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGFDKRTQDWSNDEK-KRDRKAMSYIH 63
Query: 65 LCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRM 112
L L + +L+EV +E +W KL+ + MTK T + LKQ+L+ +++
Sbjct: 64 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKL 111
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 2340
Score = 65.9 bits (159), Expect = 2e-09
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 5 KWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIV 64
K+++ F LW+VKMR +L QQ +AL G + + EK + + KA+S I
Sbjct: 212 KYDLPLLYRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEK-KRDRKAMSYIH 270
Query: 65 LCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRM 112
L L + +L+EV +E I +W KL+ + MTK T + LKQ L+ +++
Sbjct: 271 LHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKL 318
>gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37535452|ref|NP_922028.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22094359|gb|AAM91886.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1280
Score = 65.5 bits (158), Expect = 3e-09
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 5 KWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIV 64
K+++ F LW+VKMR +L QQ +AL G + + EK + + KA+S I
Sbjct: 40 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKK-DRKAMSYIH 98
Query: 65 LCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRM 112
L L + +L+EV +E +W KL+ + MTK T + LKQ+L+ +++
Sbjct: 99 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKL 146
>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa (japonica cultivar-group)]
Length = 1007
Score = 64.3 bits (155), Expect = 6e-09
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 5 KWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIV 64
K+++ F LW+VKMR +L QQ +AL G + + EK + + KA+S I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSKDEK-KRDCKAMSYIH 63
Query: 65 LCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRM 112
+ L + +L+EV +E +W KL+ + MTK T + LKQ+L+ +++
Sbjct: 64 VHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKL 111
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 63.9 bits (154), Expect = 8e-09
Identities = 44/136 (32%), Positives = 64/136 (46%), Gaps = 26/136 (19%)
Query: 8 IEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMND---------- 57
+EKF G D+ LWK K+ L + + L+G + + TE++D
Sbjct: 8 VEKFDGDGDYILWKEKL---LAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETAT 64
Query: 58 -------------KAISAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLK 104
KA S I+L LG+ VLR+V ++ M LD L+M KS +R LK
Sbjct: 65 SKLEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLK 124
Query: 105 QQLYFYRMVESKTNNE 120
Q+LY Y+M E+ T E
Sbjct: 125 QRLYGYKMSENMTMEE 140
>ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475188|gb|AAT44257.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1211
Score = 63.9 bits (154), Expect = 8e-09
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 5 KWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIV 64
K+++ F LW+VKMR +L QQ +AL G + + EK + + K +S I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK-KRDRKTMSYIH 63
Query: 65 LCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRM 112
L L + +L+EV +E +W KL+ + MTK T + LKQ+L+ +++
Sbjct: 64 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKL 111
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
gi|11278366|pir||T47492 copia-like polyprotein -
Arabidopsis thaliana
Length = 1363
Score = 62.0 bits (149), Expect = 3e-08
Identities = 43/123 (34%), Positives = 63/123 (50%), Gaps = 15/123 (12%)
Query: 8 IEKFTGSNDFGLWKVKM--RIILIQQKCV----EALKGKAQMPAHLTPAEKTEMND---- 57
+EKF G D+ +WK K+ I ++ V E GK + EK E
Sbjct: 8 VEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEEREKMEAF 67
Query: 58 -----KAISAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRM 112
KA S IVL + D+VLR++ +ET +M LD LYM+K+ +R LKQ+LY ++M
Sbjct: 68 EEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKLYSFKM 127
Query: 113 VES 115
E+
Sbjct: 128 SEN 130
>emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana]
gi|4539406|emb|CAB40039.1| putative retrotransposon
[Arabidopsis thaliana] gi|7444416|pir||T04181
hypothetical protein F7L13.40 - Arabidopsis thaliana
Length = 1230
Score = 61.6 bits (148), Expect = 4e-08
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 8 IEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEK-------------TE 54
+EKF G D+ LWK K+ + AL+ + L E+ E
Sbjct: 8 MEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEALMEE 67
Query: 55 MNDKAISAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVE 114
KA S IVL + D+VLR+ +E SM LD LYM+K+ +R LKQ+LY Y+M E
Sbjct: 68 KRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQE 127
Query: 115 S 115
+
Sbjct: 128 N 128
>ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sativa]
gi|14029020|gb|AAK52561.1| Putative retroelement pol
polyprotein [Oryza sativa]
Length = 1326
Score = 60.8 bits (146), Expect = 6e-08
Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 5 KWNIEKFTGSNDFGLWKVKMRIILIQQKCV-EALKGKAQMPAHLTPAEKTEMNDKAISAI 63
K+++ F LW+VKMR IL Q + EAL+ + + AE+ + KA+ I
Sbjct: 5 KYDLPLLDYKTRFSLWQVKMRAILAQTSDLDEALESFGKKKSTEWTAEEKRKDRKALLLI 64
Query: 64 VLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVES 115
L L + +L+EV +E +W KL+S+ M+K T + +K +L+ +++ ES
Sbjct: 65 QLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQES 116
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301702|pir||E84601 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1333
Score = 60.5 bits (145), Expect = 8e-08
Identities = 40/123 (32%), Positives = 62/123 (49%), Gaps = 15/123 (12%)
Query: 8 IEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDK--------- 58
+EKF G D+ +WK K+ L ALK + + + + TE +K
Sbjct: 8 VEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRRELL 67
Query: 59 ------AISAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRM 112
A SAIVL + D+VLR++ +E +M LD LYM+K+ +R KQ+LY ++M
Sbjct: 68 EEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFKM 127
Query: 113 VES 115
E+
Sbjct: 128 SEN 130
>gb|AAP53029.1| putative retrotransposon-related protein [Oryza sativa (japonica
cultivar-group)] gi|37532880|ref|NP_920742.1| putative
retrotransposon-related protein [Oryza sativa (japonica
cultivar-group)] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa (japonica
cultivar-group)] gi|16905223|gb|AAL31093.1| putative
retrotransposon-related protein [Oryza sativa]
Length = 1229
Score = 60.5 bits (145), Expect = 8e-08
Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 17 FGLWKVKMRIILIQQKCV-EALKGKAQMPAHLTPAEKTEMNDKAISAIVLCLGDKVLREV 75
F LW+VKMR +L Q + EAL+ + AE+ + KA+S I L L + +L++V
Sbjct: 14 FSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLIQLHLSNDILQKV 73
Query: 76 ARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVES 115
+E +W KL+S+ M+K T + +K +L+ +++ ES
Sbjct: 74 LQEKTAAELWFKLESICMSKDLTSKMHIKMKLFSHKLQES 113
>ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa (japonica
cultivar-group)] gi|40538906|gb|AAR87163.1| putative
polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1322
Score = 60.5 bits (145), Expect = 8e-08
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 5 KWNIEKFTGSNDFGLWKVKMRIILIQQKCV-EALKGKAQMPAHLTPAEKTEMNDKAISAI 63
K+++ F LW+VKMR +L Q + EAL+ + AE+ + KA+S I
Sbjct: 5 KYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLI 64
Query: 64 VLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVES 115
L L + +L+EV ++ +W KL+S+ M+K T + +K +L+ +++ ES
Sbjct: 65 QLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHES 116
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.356 0.157 0.537
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,836,215
Number of Sequences: 2540612
Number of extensions: 15956471
Number of successful extensions: 69465
Number of sequences better than 10.0: 143
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 69254
Number of HSP's gapped (non-prelim): 203
length of query: 378
length of database: 863,360,394
effective HSP length: 130
effective length of query: 248
effective length of database: 533,080,834
effective search space: 132204046832
effective search space used: 132204046832
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 76 (33.9 bits)
Medicago: description of AC123575.7