BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC123573.8 + phase: 0 /pseudo
(548 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_910568.1| Similar to Arabidopsis thaliana chromosome II B... 102 3e-20
gb|AAP52994.1| putative retroelement [Oryza sativa (japonica cul... 102 4e-20
gb|AAM19043.1| putative reverse transcriptase [Oryza sativa (jap... 102 4e-20
dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica ... 96 2e-18
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 92 4e-17
gb|AAX92750.1| retrotransposon protein, putative, unclassified [... 89 3e-16
gb|AAX95804.1| retrotransposon protein, putative, unclassified [... 87 1e-15
gb|AAM08777.1| Putative retroelement [Oryza sativa] 87 2e-15
ref|XP_468883.1| putative reverse transcriptase [Oryza sativa (j... 86 2e-15
emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa (japonica cultiva... 86 2e-15
gb|AAM94327.1| putative reverse transcriptase [Sorghum bicolor] 86 2e-15
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 86 4e-15
gb|AAX96614.1| retrotransposon protein, putative, unclassified [... 84 2e-14
emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultiva... 84 2e-14
ref|NP_910071.1| putative retrotransposon protein [Oryza sativa ... 83 2e-14
gb|AAX92720.1| retrotransposon protein, putative, unclassified [... 83 3e-14
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 82 3e-14
ref|XP_471543.1| OSJNBa0071G03.15 [Oryza sativa (japonica cultiv... 82 3e-14
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 82 3e-14
ref|NP_912588.1| Putative non-LTR retroelement reverse transcrip... 81 8e-14
>ref|NP_910568.1| Similar to Arabidopsis thaliana chromosome II BAC F13B15 genomic
sequence, putative non-LTR retroelement reverse
transcriptase. (AC006300) [Oryza sativa (japonica
cultivar-group)]
Length = 1285
Score = 102 bits (254), Expect = 3e-20
Identities = 55/164 (33%), Positives = 91/164 (54%), Gaps = 15/164 (9%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQIGINEPIV-------MSHLQFA 53
RGLRQGD SP LF L + +++ + G+ E +V ++HLQ+A
Sbjct: 1006 RGLRQGDHLSPILFNLVGDALAAILDKAK--------EWGVLEGLVPNLVDGGLTHLQYA 1057
Query: 54 DDTLIVGEKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRV 113
DDT++ + S N+ ++ L +E MSG+K+N+ KS + + V +A +LNC++
Sbjct: 1058 DDTILFIKNSDENILALKFLLFCYEEMSGMKINYQKSDVYVIGVEDSEGLRIANMLNCKI 1117
Query: 114 GSLPFVYLGMLIGGNVRCLSF*EPIIDRIKSRLSGWKSKHLSFG 157
G +PF YLG+ +G + + PI +++ RL WKS HL++G
Sbjct: 1118 GKMPFTYLGLPMGVDRIGMRDLSPIFQKVEKRLQSWKSCHLTYG 1161
>gb|AAP52994.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532810|ref|NP_920707.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|20043011|gb|AAM08819.1| Putative retroelement [Oryza
sativa]
Length = 1265
Score = 102 bits (253), Expect = 4e-20
Identities = 58/157 (36%), Positives = 88/157 (55%), Gaps = 1/157 (0%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQIGINEPIVMSHLQFADDTLIVG 60
RGLRQGDP SP LF L + V++E G + P +SHLQ+ADDT++
Sbjct: 1063 RGLRQGDPLSPLLFNLVGDALAVILEKAKERGILKGLVPDL-VPRGLSHLQYADDTILFI 1121
Query: 61 EKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSLPFVY 120
+ NV ++ L FE MSG+K+N+ KS + + V +A +LNC+VG++PF Y
Sbjct: 1122 KVGDDNVRVLKFLLFCFEEMSGMKINYQKSEVYVLGVDKEEEIRIANMLNCKVGTMPFTY 1181
Query: 121 LGMLIGGNVRCLSF*EPIIDRIKSRLSGWKSKHLSFG 157
LG+ + + II +++ RL WKS +L++G
Sbjct: 1182 LGLPMHCEKVGMKDFRLIIQKVEKRLQTWKSGYLTYG 1218
>gb|AAM19043.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1259
Score = 102 bits (253), Expect = 4e-20
Identities = 58/157 (36%), Positives = 88/157 (55%), Gaps = 1/157 (0%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQIGINEPIVMSHLQFADDTLIVG 60
RGLRQGDP SP LF L + V++E G + P +SHLQ+ADDT++
Sbjct: 1057 RGLRQGDPLSPLLFNLVGDALAVILEKAKERGILKGLVPDL-VPRGLSHLQYADDTILFI 1115
Query: 61 EKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSLPFVY 120
+ NV ++ L FE MSG+K+N+ KS + + V +A +LNC+VG++PF Y
Sbjct: 1116 KVGDDNVRVLKFLLFCFEEMSGMKINYQKSEVYVLGVDKEEEIRIANMLNCKVGTMPFTY 1175
Query: 121 LGMLIGGNVRCLSF*EPIIDRIKSRLSGWKSKHLSFG 157
LG+ + + II +++ RL WKS +L++G
Sbjct: 1176 LGLPMHCEKVGMKDFRLIIQKVEKRLQTWKSGYLTYG 1212
>dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1197
Score = 96.3 bits (238), Expect = 2e-18
Identities = 54/155 (34%), Positives = 93/155 (59%), Gaps = 6/155 (3%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQIGINEPIVMSHLQFADDTLIVG 60
+GLRQGDP SP+LF+L A+ L+E NF + I + P +Q+ADDTL++
Sbjct: 641 KGLRQGDPLSPYLFILVADVLQRLLEK----NFQIRHPIYQDRPCAT--IQYADDTLVIC 694
Query: 61 EKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSLPFVY 120
+V +R+ LL F +GL++NF+KS ++S+++ S ++ +L C++ SLP Y
Sbjct: 695 RAEEDDVLALRSTLLQFSKATGLQINFAKSTMISLHIDRSKESSLSELLQCKLESLPMSY 754
Query: 121 LGMLIGGNVRCLSF*EPIIDRIKSRLSGWKSKHLS 155
LG+ + + + +PI+ ++ S L+GW++ LS
Sbjct: 755 LGLPLSLHKLTNNDLQPIVVKVDSFLTGWEASLLS 789
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 92.0 bits (227), Expect = 4e-17
Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 7/157 (4%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQIGINEPIVMSHLQFADDTLIVG 60
RG+RQGDP SP LF L A+ ++ + + P ++HLQ+ADDT++
Sbjct: 175 RGVRQGDPLSPLLFNLVADALSEMLNNAK-------QAVPHLVPGGLTHLQYADDTILFM 227
Query: 61 EKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSLPFVY 120
+ N+ ++ L +E MSGLK+N+ KS ++ + + VA + NC+ G +PF Y
Sbjct: 228 TNTEENIVTVKFLLYCYEAMSGLKINYQKSEIMVIGGDEMETQRVADLFNCQAGKMPFTY 287
Query: 121 LGMLIGGNVRCLSF*EPIIDRIKSRLSGWKSKHLSFG 157
LG+ I N + + ++I+ RL+ WK +LS+G
Sbjct: 288 LGIPISMNKLTNADLDIPPNKIEKRLATWKCGYLSYG 324
>gb|AAX92750.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1319
Score = 89.4 bits (220), Expect = 3e-16
Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 9/161 (5%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQI-GINEPIV---MSHLQFADDT 56
+GLRQGDP SP LF A+ M + +N T QI G+ ++ +S LQ+ADDT
Sbjct: 1071 KGLRQGDPLSPILFNFIAD-----MLATLINRAKTQGQIDGVIPHLIDGGLSILQYADDT 1125
Query: 57 LIVGEKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSL 116
++ M++ LL FE +SGLK+NF KS L + ++ C+VG+
Sbjct: 1126 VLFVNHDLEKAQNMKSVLLAFEQLSGLKINFHKSELYCFGEALDYSDQYNQLFGCQVGNF 1185
Query: 117 PFVYLGMLIGGNVRCLSF*EPIIDRIKSRLSGWKSKHLSFG 157
PF YLG+LI + + +++R + +LS WK K LS G
Sbjct: 1186 PFRYLGILIHYRKLRNAEWKEVVERFEKKLSSWKGKLLSLG 1226
>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 849
Score = 87.0 bits (214), Expect = 1e-15
Identities = 58/162 (35%), Positives = 87/162 (52%), Gaps = 11/162 (6%)
Query: 1 RGLRQGDPFSPFLFLLAAEGF-HVLMESLSVNNFYTGYQIGINEPIV---MSHLQFADDT 56
RG+RQGDP SP LF + A+ +L+++ G+ G+ +V ++HLQ+ADDT
Sbjct: 354 RGVRQGDPLSPLLFNIVADALSEILLKAKEA-----GHLEGLVPHLVQGGLTHLQYADDT 408
Query: 57 LIVGEKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSL 116
++ + NV + L FE MSGLK+N+ KS ++ + VA + NC+ G
Sbjct: 409 ILFMTNNDQNVITTKFILHCFEAMSGLKINYQKSEVIVLGENPEETKRVADLFNCKCGKF 468
Query: 117 PFVYLGMLIG-GNVRCLSF*EPIIDRIKSRLSGWKSKHLSFG 157
P YLG+ I G + P D+I+ RLS WK LS+G
Sbjct: 469 PMTYLGIPISEGRLTAADLAIP-PDKIEKRLSTWKCGLLSYG 509
>gb|AAM08777.1| Putative retroelement [Oryza sativa]
Length = 779
Score = 86.7 bits (213), Expect = 2e-15
Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 1/139 (0%)
Query: 19 EGFHVLMESLSVNNFYTGYQIGINEPIVMSHLQFADDTLIVGEKS*ANVTGMRAALLLFE 78
+ V++E + N G + P +SHLQ+A+DT++ + + NV ++ L FE
Sbjct: 46 DALSVILEGANRNGVLEGLAPNL-VPGGLSHLQYANDTILFAKATKENVLALKFLLFCFE 104
Query: 79 TMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSLPFVYLGMLIGGNVRCLSF*EPI 138
MSG+K+N+ KS + + V + +LNC+VGSLPF YLG+ +G PI
Sbjct: 105 EMSGMKINYQKSEVYVLGVPKEEEELYVDMLNCKVGSLPFTYLGLPMGVGKVGKRDLLPI 164
Query: 139 IDRIKSRLSGWKSKHLSFG 157
+ +I+ RL W S HLS+G
Sbjct: 165 MQKIEKRLQSWHSGHLSYG 183
>ref|XP_468883.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|29126371|gb|AAO66563.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 746
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 12/151 (7%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQIGINEPIVMSHL-----QFADD 55
RG++QGDP SP LF+LAA+ L++S++ G ++ PI L Q+ADD
Sbjct: 387 RGVKQGDPISPLLFVLAAD----LLQSMTNRALSNGI---LSLPIPTHDLKFPIIQYADD 439
Query: 56 TLIVGEKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGS 115
TLI+ + + ++ L + +GLK+N+ KS ++ +NV+ ++++ C+ G+
Sbjct: 440 TLIIMKACQKEIFNLKGILQSYSESTGLKINYQKSCMIHINVLEEDKDILSKTFGCQSGN 499
Query: 116 LPFVYLGMLIGGNVRCLSF*EPIIDRIKSRL 146
LPF YLG+ +G + P+IDR++ RL
Sbjct: 500 LPFTYLGLPVGTTKPKIIDFAPLIDRVERRL 530
>emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa (japonica cultivar-group)]
Length = 779
Score = 86.3 bits (212), Expect = 2e-15
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 7/130 (5%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQIGINEPIV---MSHLQFADDTL 57
+G+RQGDP SP +F L A+ ++ G+ G+ +V ++HLQ+ADDT+
Sbjct: 354 KGVRQGDPLSPLMFYLVADALPEMLNKAKE----AGHLQGLVPHLVPGGLTHLQYADDTI 409
Query: 58 IVGEKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSLP 117
+ S N+ ++ L +E MSGLK+NF KS ++ + V + VA + NC+ G+LP
Sbjct: 410 LFMTNSEENIVTVKFLLYCYEAMSGLKINFQKSEVIVLGVEEMEAQRVADLFNCKRGALP 469
Query: 118 FVYLGMLIGG 127
YLG+ I G
Sbjct: 470 ITYLGLPIKG 479
>gb|AAM94327.1| putative reverse transcriptase [Sorghum bicolor]
Length = 1998
Score = 86.3 bits (212), Expect = 2e-15
Identities = 51/149 (34%), Positives = 82/149 (54%), Gaps = 7/149 (4%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMES---LSVNNFYTGYQIGINEPIVMSHLQFADDTL 57
RG+RQGDP SP LF+LAA+ L+ + + Q + PI+ Q+ADDTL
Sbjct: 1442 RGVRQGDPLSPLLFVLAADFLQSLINKAKCMDLLKLPIPMQTNQDFPII----QYADDTL 1497
Query: 58 IVGEKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSLP 117
I+ E + +++ + F +GLKVN KS+++ +N+ L +AR C GS P
Sbjct: 1498 IIAEGDTRQLLILKSIINTFSEATGLKVNLQKSMMLPINMDEERLDTLARTFGCSKGSFP 1557
Query: 118 FVYLGMLIGGNVRCLSF*EPIIDRIKSRL 146
F YLG+ +G + +P+I++ ++RL
Sbjct: 1558 FTYLGLPLGITKPTIQDYQPLINKCEARL 1586
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 85.5 bits (210), Expect = 4e-15
Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQIGINEPIVMSHLQFADDTLIVG 60
+GLRQGDP SP LF LAAE +L++ N+ G +G N ++ LQ+ADDT+ +
Sbjct: 439 KGLRQGDPLSPLLFNLAAEALTLLVQRAEENSLIEG--LGTNGDNKIAILQYADDTIFLI 496
Query: 61 EKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSLPFVY 120
+ ++ L LFE +SGLK+NF+KS + + + + C+VGSLP Y
Sbjct: 497 NDKLDHAKNLKYILCLFEQLSGLKINFNKSEVFCFGEAKEKQDLYSNIFTCKVGSLPLKY 556
Query: 121 LGMLI 125
LG+ I
Sbjct: 557 LGIPI 561
>gb|AAX96614.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1427
Score = 83.6 bits (205), Expect = 2e-14
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 10/126 (7%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQIGINEPIVMSHLQFADDTLIVG 60
RG+RQGDP SP LF+L AE V++ ++F + I +Q+ADDTL
Sbjct: 439 RGVRQGDPLSPLLFVLGAELLQVILSKPFPSDFDPNFPI----------VQYADDTLFYL 488
Query: 61 EKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSLPFVY 120
+ S + ++A F+ +GLKVNF+K+ L+ +NV +A V C++GSLPF Y
Sbjct: 489 KASSKELFTLKALWQTFQLGTGLKVNFNKTCLIPINVDEGKAQNLAAVFGCQLGSLPFTY 548
Query: 121 LGMLIG 126
LG+ +G
Sbjct: 549 LGLPLG 554
>emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultivar-group)]
gi|50930119|ref|XP_474587.1| OSJNBa0019G23.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1140
Score = 83.6 bits (205), Expect = 2e-14
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 9/161 (5%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQI-GINEPIV---MSHLQFADDT 56
+GL+QGDP SP LF F V M + +N T Q+ G+ ++ +S LQ+ DD
Sbjct: 864 KGLQQGDPLSPILF-----NFIVDMLATLINRAKTQGQVDGLIPHLIDGGLSILQYVDDI 918
Query: 57 LIVGEKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSL 116
++ M++ LL FE +SGLK+NF KS L + A++ C+VG+
Sbjct: 919 VLFMNHDLEKAQNMKSVLLAFEQLSGLKINFHKSELYCFGEALEYRDQYAQLFGCQVGNF 978
Query: 117 PFVYLGMLIGGNVRCLSF*EPIIDRIKSRLSGWKSKHLSFG 157
PF YLG+ I + + +++R + +LS WK K LS G
Sbjct: 979 PFRYLGIPIHCRKLRNAEWKEVVERFEKKLSSWKGKLLSLG 1019
>ref|NP_910071.1| putative retrotransposon protein [Oryza sativa (japonica
cultivar-group)] gi|28269413|gb|AAO37956.1| putative
retrotransposon protein [Oryza sativa (japonica
cultivar-group)]
Length = 543
Score = 83.2 bits (204), Expect = 2e-14
Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 11/159 (6%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQIGINEPI----VMSHLQFADDT 56
RGLRQGDP SP LF+LA + ++ + I+EP V S +ADD
Sbjct: 108 RGLRQGDPLSPLLFVLAMDALQAVVAQAKASGL-------ISEPAPRRPVPSISIYADDA 160
Query: 57 LIVGEKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSL 116
++ + S ++A L +F SGL N++KS + + L +VA L C +
Sbjct: 161 VLFFKPSQQEAKVVKAILQIFGAASGLMTNYNKSAITPIQCSQEQLQVVANELQCNIQLF 220
Query: 117 PFVYLGMLIGGNVRCLSF*EPIIDRIKSRLSGWKSKHLS 155
P +YLG+ + + +PI+D++ ++++GWK K LS
Sbjct: 221 PIIYLGLPLSTRKPTKAEVQPILDKLANKVAGWKPKLLS 259
>gb|AAX92720.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62701880|gb|AAX92953.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 838
Score = 82.8 bits (203), Expect = 3e-14
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQIGINEPIVMSHLQFADDTLIVG 60
+GLRQGDP SP LF LAA+ +L++ N G N +V+ LQ+ADDT+ +
Sbjct: 601 KGLRQGDPLSPLLFNLAAKALILLVQRAEDNLLIEGLGENDNNKVVI--LQYADDTIFLL 658
Query: 61 EKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSLPFVY 120
+ ++ L LFE +SGLK+NF+KS + + + +++ C VG LP Y
Sbjct: 659 PDNETYAKNLKYILCLFEQLSGLKINFNKSEVFCIGEAADKAEVFSQIFTCSVGVLPMKY 718
Query: 121 LGMLIGGNVRCLSF*EPIIDRIKSRLSGWKSKHLSFG 157
LG+ + ++++S+L W+ K S G
Sbjct: 719 LGIPLDQKRITKKDWRNAENKMESKLGCWQGKLQSIG 755
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 82.4 bits (202), Expect = 3e-14
Identities = 60/157 (38%), Positives = 80/157 (50%), Gaps = 4/157 (2%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQIGINEPIVMSHLQFADDTLIVG 60
RGLRQGDP SP+LFLL AEGF L+ G +I P V SHL FADD+LI+
Sbjct: 832 RGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSV-SHLLFADDSLILC 890
Query: 61 EKS*ANVTGMRAALLLFETMSGLKVNFSKS-LLVSVNVVGLWLSMVARVLNCRVGSLPFV 119
+ ++ L ++E SG +N KS ++ S N L V LN + +
Sbjct: 891 RANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEK 950
Query: 120 YLGM-LIGGNVRCLSF*EPIIDRIKSRLSGWKSKHLS 155
YLG+ + G R F + +RI R+ GWK K LS
Sbjct: 951 YLGLPVFVGRSRTKIF-SYLKERIWQRIQGWKEKLLS 986
>ref|XP_471543.1| OSJNBa0071G03.15 [Oryza sativa (japonica cultivar-group)]
gi|38346611|emb|CAD39801.2| OSJNBa0071G03.15 [Oryza
sativa (japonica cultivar-group)]
gi|38346419|emb|CAD40206.2| OSJNBa0019J05.4 [Oryza
sativa (japonica cultivar-group)]
Length = 637
Score = 82.4 bits (202), Expect = 3e-14
Identities = 49/129 (37%), Positives = 74/129 (56%), Gaps = 7/129 (5%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGY---QIGINEPIVMSHLQFADDTL 57
RG+RQGDP SP +++L AE L++ + F G I N+ +Q+ADDTL
Sbjct: 499 RGVRQGDPLSPLIYVLGAE----LLQRIVNRAFNLGLISKPINANDGSGFPIIQYADDTL 554
Query: 58 IVGEKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSLP 117
I+ + S + +A L +F +GLKVN++KS L +N+ ++A +L C VG LP
Sbjct: 555 ILLKTSQKEIFCFKALLNMFALSTGLKVNYAKSSLYPLNLSEEKTDLIAGLLRCSVGKLP 614
Query: 118 FVYLGMLIG 126
F YLG+ +G
Sbjct: 615 FTYLGLPLG 623
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
Length = 1333
Score = 82.4 bits (202), Expect = 3e-14
Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 14/164 (8%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQIGINEPIVMSHLQFADDTLIVG 60
RGLRQGDP SPFLF+L +EG LM +G + N P + HL FADD+L +
Sbjct: 633 RGLRQGDPLSPFLFVLCSEGLTHLMNRAERQGLLSGIRFSENGPAI-HHLLFADDSLFMC 691
Query: 61 EKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVG----LWLSMVARVLNCRVGSL 116
+ VT +++ ++ ++G ++N+ KS + +V +W+ + N S
Sbjct: 692 KAVKEEVTVIKSIFKVYGDVTGQRINYDKSSITLGALVDEDCKVWIQAELGITNEGGAS- 750
Query: 117 PFVYLGM---LIGGNVRCLSF*EPIIDRIKSRLSGWKSKHLSFG 157
YLG+ G V+ L + I DR+K+RLSGW ++ LS G
Sbjct: 751 --TYLGLPECFSGSKVQLLDY---IKDRLKTRLSGWFARTLSMG 789
>ref|NP_912588.1| Putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|22748339|gb|AAN05341.1|
Putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 603
Score = 81.3 bits (199), Expect = 8e-14
Identities = 53/157 (33%), Positives = 79/157 (49%), Gaps = 1/157 (0%)
Query: 1 RGLRQGDPFSPFLFLLAAEGFHVLMESLSVNNFYTGYQIGINEPIVMSHLQFADDTLIVG 60
+GLRQGDP SP LF L A+ +L++ + G + + +S LQ+ADDT++
Sbjct: 85 KGLRQGDPLSPILFNLVADMLSILIQRAKDQGRFQGVIPHLVDN-GLSILQYADDTILFM 143
Query: 61 EKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVARVLNCRVGSLPFVY 120
E V ++ L FE ++GLK+NF KS L + + CR G+ PF Y
Sbjct: 144 EHDLDEVKNLKLVLSTFEKLAGLKINFHKSELFCYGKSKFAENEYVMLFGCRSGTYPFRY 203
Query: 121 LGMLIGGNVRCLSF*EPIIDRIKSRLSGWKSKHLSFG 157
LG+ + + I +R + +LS WK K LS G
Sbjct: 204 LGIPMHHKKLSNKDWQIIEERFQRKLSSWKGKCLSVG 240
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.351 0.160 0.556
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 831,118,105
Number of Sequences: 2540612
Number of extensions: 31997861
Number of successful extensions: 108640
Number of sequences better than 10.0: 391
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 249
Number of HSP's that attempted gapping in prelim test: 108069
Number of HSP's gapped (non-prelim): 438
length of query: 548
length of database: 863,360,394
effective HSP length: 133
effective length of query: 415
effective length of database: 525,458,998
effective search space: 218065484170
effective search space used: 218065484170
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 78 (34.7 bits)
Medicago: description of AC123573.8