BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC123570.3 + phase: 0 /pseudo
(1023 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199623.1| expressed protein [Arabidopsis thaliana] 738 0.0
ref|XP_476830.1| DNA repair/transcription protein Mms19-like pro... 343 2e-92
ref|XP_421710.1| PREDICTED: similar to MMS19 [Gallus gallus] 117 3e-24
emb|CAI14189.1| MMS19-like (MET18 homolog, S. cerevisiae) [Homo ... 114 1e-23
emb|CAI40792.1| MMS19-like (MET18 homolog, S. cerevisiae) [Homo ... 114 1e-23
gb|AAX59033.1| MMS19-like (MET18 homolog, S. cerevisiae) [Homo s... 114 1e-23
emb|CAC29239.1| MMS19 protein [Homo sapiens] 114 1e-23
gb|AAK70402.1| transcriptional coactivator MMS19 [Homo sapiens] ... 114 2e-23
gb|AAK52670.1| MMS19 [Mus musculus] 114 2e-23
ref|NP_082428.1| MMS19 (MET18 S. cerevisiae)-like [Mus musculus]... 114 2e-23
emb|CAF92821.1| unnamed protein product [Tetraodon nigroviridis] 114 2e-23
dbj|BAB26853.1| unnamed protein product [Mus musculus] 114 2e-23
ref|XP_534982.1| PREDICTED: similar to MMS19 [Canis familiaris] 113 3e-23
gb|AAH78095.1| Mms19l-prov protein [Xenopus laevis] 109 4e-22
emb|CAI14190.1| MMS19-like (MET18 homolog, S. cerevisiae) [Homo ... 108 9e-22
ref|XP_636848.1| hypothetical protein DDB0187837 [Dictyostelium ... 103 4e-20
emb|CAH91091.1| hypothetical protein [Pongo pygmaeus] 101 1e-19
dbj|BAB55315.1| unnamed protein product [Homo sapiens] 101 1e-19
gb|AAH80532.1| MMS19L protein [Homo sapiens] 101 1e-19
ref|XP_313296.2| ENSANGP00000010461 [Anopheles gambiae str. PEST... 94 2e-17
>ref|NP_199623.1| expressed protein [Arabidopsis thaliana]
Length = 1152
Score = 738 bits (1906), Expect = 0.0
Identities = 438/1042 (42%), Positives = 630/1042 (60%), Gaps = 52/1042 (4%)
Query: 1 MVTGSDAKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAA 60
+VT D +A+A+ IQ++ Q+L L++RKL FELL+CLL+ H++++ ++ + L++ C A
Sbjct: 125 VVTDIDVQAMAKSMIQNVQVQALALHERKLAFELLECLLQQHSEAILTMGDLLVYAMCEA 184
Query: 61 IDAERDPECLMPAFHIVESLARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHV 120
ID E+DP+CLM FH+VE LA L+P PSG AS A D+F+++ YFP+ FTHT +A++
Sbjct: 185 IDGEKDPQCLMIVFHLVELLAPLFPSPSGPLASDASDLFEVIGCYFPLHFTHTKDDEANI 244
Query: 121 HRDDLSRTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAK 180
R+DLSR L+ A SSTP FEP+ IPLLL+KLSSSL AK+DSL+ L+ C+ KYG +R+ K
Sbjct: 245 RREDLSRGLLLAISSTPFFEPYAIPLLLEKLSSSLPVAKVDSLKCLKDCALKYGVDRMKK 304
Query: 181 YVGAIWSSLKDTINTYLMEPNFSFTLAPTDGIDFPKNEVVIEALSLLQQLIVQNSSQLVS 240
+ GA+WS+LKDT + + SF + F NE+ +A+SLLQ+L+ Q+ S +
Sbjct: 305 HYGALWSALKDTFYS-STGTHLSFAIESLTSPGFEMNEIHRDAVSLLQRLVKQDIS-FLG 362
Query: 241 LIIDDKDVNFIINSIASYEMYDAVSVQEKKKLHVIGRILYIFAKTSIPSCNAVFQSLLLR 300
++DD +N + ++I Y Y + K ++ VI +IL + AK S+ SCN +F+++ R
Sbjct: 363 FVVDDTRINTVFDTIYRYPQYKEMPDPSKLEVLVISQILSVSAKASVQSCNIIFEAIFFR 422
Query: 301 MMDSLGF--SVSNIDGLKNAGILASQSVNFGFLYLCIELLAGCRELVILSEEKPGTC--- 355
+M++LG S D ++N S + G L+LCIELLA ++L++ EE T
Sbjct: 423 LMNTLGIVEKTSTGDVVQNGNSTVSTRLYHGGLHLCIELLAASKDLILGFEECSPTSGCA 482
Query: 356 ---FTILHSSSDFLFNSFCSVLAVSADRFPPDPDIYIGVKGLQILAMFNLDVFPIPKSTF 412
+++ S S L F S + S D D+Y+GVKGL + MF P+ ++ F
Sbjct: 483 NSGCSMVKSFSVPLIQVFTSAVCRSND--DSVVDVYLGVKGLLTMGMFRGGSSPVSRTEF 540
Query: 413 ENILKKFMSIIIEDFNKTILWNSTLKSLFHIGSLFQNFSESEKAMSYRSFVLDKTMELLS 472
ENIL SII KT++W LK+L IGS + ES+KAMSY S V+D + L
Sbjct: 541 ENILVTLTSIITAKSGKTVVWELALKALVCIGSFIDRYHESDKAMSYMSIVVDNLVSLAC 600
Query: 473 LDDISLPFSLKLEVLSDIGMTSMKNMLKILQGLEGAIFANLSE-------VLFIYM**LH 525
LP+ + LE S++ T K + K++QGLE A ++LS+ V Y+
Sbjct: 601 SSHCGLPYQMILEATSEVCSTGPKYVEKMVQGLEEAFCSSLSDFYIESFLVSNFYLETTC 660
Query: 526 YLIFHGQGI----MLLECYSCKLLPWYSAFQGAEEFILQFSVDIWNQAGNCMDFNSPFEE 581
+ + + I LL+C + KLLP + G E+ ++ F++ +W Q C F+ F
Sbjct: 661 QVNGNFESIDNCSQLLKCLTNKLLPRVAEIDGLEQLLVHFAISMWKQIEFCGVFSCDFNG 720
Query: 582 KGLLDATMKAMKFSVGCCSEESQNVIILKSYSILSSRTNFQLNDVQRLPLTFE-----KY 636
+ ++A M M+ VG +SQN II K+YS++SS T L ++ +PLTF +
Sbjct: 721 REFVEAAMTTMRQVVGIALVDSQNSIIQKAYSVVSSCT---LPAMESIPLTFVALEGLQR 777
Query: 637 DISLRDEGILLLFASVIIALRPKTHVPNIRGILHLFIITLLKGVVPVAQALGSMVNKLIS 696
D+S RDE IL LFASVIIA P +P+ + ++HL ++TLLKG +P AQALGSMVNKL S
Sbjct: 778 DLSSRDELILSLFASVIIAASPSASIPDAKSLIHLLLVTLLKGYIPAAQALGSMVNKLGS 837
Query: 697 KSNGAEKSDELTLEEALHIIFNTKIC----FSSDNMLQICDGSINRNEIVLTDVCLGMTN 752
S G S + +LEEA IIF+ SS+ +I GS E ++ +CLG
Sbjct: 838 GSGGTNTSRDCSLEEACAIIFHADFASGKKISSNGSAKIIVGS----ETTMSKICLGYCG 893
Query: 753 DRLLQTNAVCGLSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHK 812
LQT A+ GL+WIGKGLL+RG+E++ +I +L ECL S+ N H
Sbjct: 894 SLDLQTRAITGLAWIGKGLLMRGNERVNEIALVLVECLKSN-------------NCSGHA 940
Query: 813 GDHLARKCAADAFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSS 872
A K AADAF ++MSD+E CLNRKFHA +RPLYKQR FS+++PI LI S +S S
Sbjct: 941 LHPSAMKHAADAFSIIMSDSEVCLNRKFHAVIRPLYKQRCFSTIVPILESLIMNSQTSLS 1000
Query: 873 RYLLLRAFARVMSVTPLIVILNDAKELISVLLDCLSMLTEDIQDKDILYGLLLVLSGMLT 932
R +L A A V+S P+ VIL++ K+L ++L+ LS+L+ D +K+ L+ LLLVLSG LT
Sbjct: 1001 RTMLHVALAHVISNVPVTVILDNTKKLQPLILEGLSVLSLDSVEKETLFSLLLVLSGTLT 1060
Query: 933 EKNESLLFKAIQIKNDVNG*FLFLPILQLVRESCIQCLVALSKLPHVRIYPLRTQVLEAI 992
+ S F I N L +Q+VRE+ IQCLVAL +LPH RIYP R +VL+AI
Sbjct: 1061 DTKASSFFPTELILESSNDNMSTLNGMQVVRETSIQCLVALLELPHRRIYPFRREVLQAI 1120
Query: 993 SKCLDDTKRSVRNEAVKCRQAW 1014
K LDD KR VR EA++CRQAW
Sbjct: 1121 EKSLDDPKRKVREEAIRCRQAW 1142
>ref|XP_476830.1| DNA repair/transcription protein Mms19-like protein [Oryza sativa
(japonica cultivar-group)] gi|34393839|dbj|BAC83443.1|
DNA repair/transcription protein Mms19-like protein
[Oryza sativa (japonica cultivar-group)]
Length = 674
Score = 343 bits (880), Expect = 2e-92
Identities = 202/529 (38%), Positives = 312/529 (58%), Gaps = 24/529 (4%)
Query: 5 SDAKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAE 64
+D K + + F+Q++ QSL DRKLCF++L+ +L+H+ ++V ++ ++L++G C AID E
Sbjct: 127 ADVKRLLETFLQNVQVQSLAAADRKLCFQILNYILDHYPEAVKTMGDELLYGMCEAIDEE 186
Query: 65 RDPECLMPAFHIVESLARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDD 124
+DPECL +F++VE++ +L+PDPSGL A +A +VF++L Y+PI FTH D RDD
Sbjct: 187 KDPECLKLSFNLVEAVMKLFPDPSGLAAQYASEVFEILSKYYPIYFTHGVGDDLDATRDD 246
Query: 125 LSRTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGA 184
LS+ LM+AF STP FEPF IPLLL KLSSSL AK+DSL+YL C YGA+R+ ++V
Sbjct: 247 LSKALMHAFCSTPYFEPFAIPLLLDKLSSSLPLAKLDSLKYLDNCIRCYGADRMGRHVIT 306
Query: 185 IWSSLKDTINTYLMEPNFSFTLAPTDGIDFPKNEVVIEALSLLQQLIVQ----NSSQLVS 240
IW LK+ I + ++ S + A ++ KNE+V EAL+ L+ I+Q + +L++
Sbjct: 307 IWFKLKEVIFSLSIDQILSTSGA--KDMEKNKNEIVSEALTCLKTAIIQMGPSDEDRLIN 364
Query: 241 LIIDDKDVNFIINSIASYEMYDAVSVQEKKKLHVIGRILYIFAKTSIPSCNAVFQSLLLR 300
LI+ D+D+ I+S+AS E S+Q +LH +G ++ I A++S C V Q+ R
Sbjct: 365 LILLDEDIVSSIHSVASEEASGLTSLQNPIQLHALGSVISILAESSAYFCTRVLQAHFAR 424
Query: 301 MMDSLGFSVS-NIDGLKNAGILASQSVNFGFLYLCIELLAGCRELVILSEEK-------P 352
++DSL S L N +S ++N+G LYL +++L+ CRE+ + +E+
Sbjct: 425 LVDSLEISAGRESQHLNNCSGPSSGAINYGALYLSVQMLSSCREVALTYKEEFSPIKSAK 484
Query: 353 GTCFTILHSSSDFLFNSFCSVLAV------SADRFPPDPDIYIGVKGLQILAMFNLDVFP 406
+ + IL D L + S+L + SADR + VKGL ILA F P
Sbjct: 485 ESWWLILEKKLDSLIHILQSLLTIDSQFVQSADR---QEYVLCAVKGLIILATFPEPRLP 541
Query: 407 IPKSTFENILKKFMSIIIEDFNKTILWNSTLKSLFHIGSLFQNFSESEKAMSYRSFVLDK 466
+ S +E++L S+I+ + LW +LK+L IGS F S+K Y V+DK
Sbjct: 542 LSASAYEDVLLTLTSVIMSKYENMHLWRLSLKALTTIGSSIVEFHASQKENIYNK-VVDK 600
Query: 467 TMELLSLDDISLPFSLKLEVLSDIGMTSMKNMLKILQGLEGAIFANLSE 515
L S+P +L+LE ++G + ML+I + LE A+ N+SE
Sbjct: 601 ISSLDEPCRTSIPLNLRLEACFEVGTSGSNCMLRIAKSLEEAVVGNISE 649
>ref|XP_421710.1| PREDICTED: similar to MMS19 [Gallus gallus]
Length = 1156
Score = 117 bits (292), Expect = 3e-24
Identities = 62/184 (33%), Positives = 99/184 (53%), Gaps = 4/184 (2%)
Query: 7 AKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAERD 66
A ++ + Q +H QSL DR + ++ + + + L D FGF +D E+D
Sbjct: 147 AVSVLKAIFQEVHVQSLLQQDRYTVYSIITNFMASREEELKGLGADFTFGFIQVMDGEKD 206
Query: 67 PECLMPAFHIVESLARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDDLS 126
P LM AF IV L + F ++F++ YFPI FT + + R+DL
Sbjct: 207 PRNLMVAFQIVRDLIL----KNYALGPFVEELFEVTSCYFPIDFTPPPNDPHGIQREDLI 262
Query: 127 RTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGAIW 186
+L +STP F F++PLL++K+ S L SAK+DSLQ L C + YG + + +++ ++W
Sbjct: 263 LSLRAVLASTPQFAEFLLPLLIEKMDSDLQSAKLDSLQTLTACCAIYGQKELQEFLPSLW 322
Query: 187 SSLK 190
SSL+
Sbjct: 323 SSLR 326
Score = 89.0 bits (219), Expect = 8e-16
Identities = 72/263 (27%), Positives = 127/263 (47%), Gaps = 36/263 (13%)
Query: 757 QTNAVCGLSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDHL 816
+T A+ L W+ K L+LR H +T L L+SD
Sbjct: 921 RTQALTLLLWVTKALVLRYHPLSSHLTDKLLG-LLSDTELG------------------- 960
Query: 817 ARKCAADAFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSS-SSRYL 875
AAD F +LM+++ D L++ HA +R +++QRFF+ +P +Q + + + YL
Sbjct: 961 --PTAADGFSLLMAESPDVLHKGCHADVRIMFRQRFFTDNVPKLVQGFHGAGADVKANYL 1018
Query: 876 LLRAFARVMSVTPLIVILNDAKELISVLLDCLSMLTEDIQDKDI--LYGLLLVLSGMLTE 933
++ + V++ P V++ + L+S+LL+ LS +Q + L LLL +++
Sbjct: 1019 --KSLSHVLNHLPKPVLVTELPTLLSLLLEALSCSDRVVQLSTLSCLQPLLLEAPQIMSL 1076
Query: 934 KNESLLFKAIQIKNDVNG*FLFLPILQLVRESCIQCLVALSKLPHVRIYPLRTQVLEAIS 993
++L+ K + + + VR + ++C AL+ LP + P + +V+ A++
Sbjct: 1077 HIDTLVTKFLSLTSSPT---------MAVRIAALRCAHALTSLPTTVLLPYKARVIRALA 1127
Query: 994 KCLDDTKRSVRNEAVKCRQAWLV 1016
K LDD KR VR EAV R W +
Sbjct: 1128 KPLDDKKRLVRKEAVAARGEWFL 1150
>emb|CAI14189.1| MMS19-like (MET18 homolog, S. cerevisiae) [Homo sapiens]
gi|57209131|emb|CAI40770.1| MMS19-like (MET18 homolog,
S. cerevisiae) [Homo sapiens]
Length = 1030
Score = 114 bits (286), Expect = 1e-23
Identities = 61/185 (32%), Positives = 101/185 (53%), Gaps = 6/185 (3%)
Query: 7 AKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAERD 66
A ++ + Q +H QSL DR + ++ + + + SL D FGF +D E+D
Sbjct: 127 AVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQVMDGEKD 186
Query: 67 PECLMPAFHIVESL-ARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDDL 125
P L+ AF IV L +R Y F ++F++ YFPI FT + + R+DL
Sbjct: 187 PRNLLVAFRIVHDLISRDYS-----LGPFVEELFEVTSCYFPIDFTPPPNDPHGIQREDL 241
Query: 126 SRTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGAI 185
+L +STP F F++PLL++K+ S + SAK+DSLQ L C + YG + + ++ ++
Sbjct: 242 ILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 301
Query: 186 WSSLK 190
W+S++
Sbjct: 302 WASIR 306
Score = 93.6 bits (231), Expect = 3e-17
Identities = 74/255 (29%), Positives = 118/255 (46%), Gaps = 34/255 (13%)
Query: 764 LSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDHLARKCAAD 823
L W+ K L+LR H L+ CL + L D AAD
Sbjct: 802 LLWVTKALVLRYHP--------LSSCLTARLMGLL--------------SDPELGPAAAD 839
Query: 824 AFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYLLLRAFARV 883
F +LMSD D L R HA +R +++QRFF+ +P +Q + L + + V
Sbjct: 840 GFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYL-KGLSHV 898
Query: 884 MSVTPLIVILNDAKELISVLLDCLSM--LTEDIQDKDILYGLLLVLSGMLTEKNESLLFK 941
++ P V+L + L+S+LL+ LS + L LLL +++ ++L+ K
Sbjct: 899 LNRLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTK 958
Query: 942 AIQIKNDVNG*FLFLPILQLVRESCIQCLVALSKLPHVRIYPLRTQVLEAISKCLDDTKR 1001
+ + + + VR + +QC+ AL++LP + P + QV+ A++K LDD KR
Sbjct: 959 FLNLSSSPS---------MAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKR 1009
Query: 1002 SVRNEAVKCRQAWLV 1016
VR EAV R W +
Sbjct: 1010 LVRKEAVSARGEWFL 1024
>emb|CAI40792.1| MMS19-like (MET18 homolog, S. cerevisiae) [Homo sapiens]
Length = 885
Score = 114 bits (286), Expect = 1e-23
Identities = 61/185 (32%), Positives = 101/185 (53%), Gaps = 6/185 (3%)
Query: 7 AKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAERD 66
A ++ + Q +H QSL DR + ++ + + + SL D FGF +D E+D
Sbjct: 80 AVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQVMDGEKD 139
Query: 67 PECLMPAFHIVESL-ARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDDL 125
P L+ AF IV L +R Y F ++F++ YFPI FT + + R+DL
Sbjct: 140 PRNLLVAFRIVHDLISRDYS-----LGPFVEELFEVTSCYFPIDFTPPPNDPHGIQREDL 194
Query: 126 SRTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGAI 185
+L +STP F F++PLL++K+ S + SAK+DSLQ L C + YG + + ++ ++
Sbjct: 195 ILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 254
Query: 186 WSSLK 190
W+S++
Sbjct: 255 WASIR 259
Score = 93.6 bits (231), Expect = 3e-17
Identities = 74/255 (29%), Positives = 118/255 (46%), Gaps = 34/255 (13%)
Query: 764 LSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDHLARKCAAD 823
L W+ K L+LR H L+ CL + L D AAD
Sbjct: 657 LLWVTKALVLRYHP--------LSSCLTARLMGLL--------------SDPELGPAAAD 694
Query: 824 AFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYLLLRAFARV 883
F +LMSD D L R HA +R +++QRFF+ +P +Q + L + + V
Sbjct: 695 GFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYL-KGLSHV 753
Query: 884 MSVTPLIVILNDAKELISVLLDCLSM--LTEDIQDKDILYGLLLVLSGMLTEKNESLLFK 941
++ P V+L + L+S+LL+ LS + L LLL +++ ++L+ K
Sbjct: 754 LNRLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTK 813
Query: 942 AIQIKNDVNG*FLFLPILQLVRESCIQCLVALSKLPHVRIYPLRTQVLEAISKCLDDTKR 1001
+ + + + VR + +QC+ AL++LP + P + QV+ A++K LDD KR
Sbjct: 814 FLNLSSSPS---------MAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKR 864
Query: 1002 SVRNEAVKCRQAWLV 1016
VR EAV R W +
Sbjct: 865 LVRKEAVSARGEWFL 879
>gb|AAX59033.1| MMS19-like (MET18 homolog, S. cerevisiae) [Homo sapiens]
gi|14029386|gb|AAK52668.1| MMS19 [Homo sapiens]
Length = 1030
Score = 114 bits (286), Expect = 1e-23
Identities = 61/185 (32%), Positives = 101/185 (53%), Gaps = 6/185 (3%)
Query: 7 AKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAERD 66
A ++ + Q +H QSL DR + ++ + + + SL D FGF +D E+D
Sbjct: 127 AVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQVMDGEKD 186
Query: 67 PECLMPAFHIVESL-ARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDDL 125
P L+ AF IV L +R Y F ++F++ YFPI FT + + R+DL
Sbjct: 187 PRNLLVAFRIVHDLISRDYS-----LGPFVEELFEVTSCYFPIDFTPPPNDPHGIQREDL 241
Query: 126 SRTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGAI 185
+L +STP F F++PLL++K+ S + SAK+DSLQ L C + YG + + ++ ++
Sbjct: 242 ILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 301
Query: 186 WSSLK 190
W+S++
Sbjct: 302 WASIR 306
Score = 93.6 bits (231), Expect = 3e-17
Identities = 74/255 (29%), Positives = 118/255 (46%), Gaps = 34/255 (13%)
Query: 764 LSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDHLARKCAAD 823
L W+ K L+LR H L+ CL + L D AAD
Sbjct: 802 LLWVTKALVLRYHP--------LSSCLTARLMGLL--------------SDPELGPAAAD 839
Query: 824 AFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYLLLRAFARV 883
F +LMSD D L R HA +R +++QRFF+ +P +Q + L + + V
Sbjct: 840 GFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYL-KGLSHV 898
Query: 884 MSVTPLIVILNDAKELISVLLDCLSM--LTEDIQDKDILYGLLLVLSGMLTEKNESLLFK 941
++ P V+L + L+S+LL+ LS + L LLL +++ ++L+ K
Sbjct: 899 LNRLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTK 958
Query: 942 AIQIKNDVNG*FLFLPILQLVRESCIQCLVALSKLPHVRIYPLRTQVLEAISKCLDDTKR 1001
+ + + + VR + +QC+ AL++LP + P + QV+ A++K LDD KR
Sbjct: 959 FLNLSSSPS---------MAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKR 1009
Query: 1002 SVRNEAVKCRQAWLV 1016
VR EAV R W +
Sbjct: 1010 LVRKEAVSARGEWFL 1024
>emb|CAC29239.1| MMS19 protein [Homo sapiens]
Length = 1030
Score = 114 bits (286), Expect = 1e-23
Identities = 61/185 (32%), Positives = 101/185 (53%), Gaps = 6/185 (3%)
Query: 7 AKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAERD 66
A ++ + Q +H QSL DR + ++ + + + SL D FGF +D E+D
Sbjct: 127 AVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQVMDGEKD 186
Query: 67 PECLMPAFHIVESL-ARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDDL 125
P L+ AF IV L +R Y F ++F++ YFPI FT + + R+DL
Sbjct: 187 PRNLLVAFRIVHDLISRDYS-----LGPFVEELFEVTSCYFPIDFTPPPNDPHGIQREDL 241
Query: 126 SRTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGAI 185
+L +STP F F++PLL++K+ S + SAK+DSLQ L C + YG + + ++ ++
Sbjct: 242 ILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 301
Query: 186 WSSLK 190
W+S++
Sbjct: 302 WASIR 306
Score = 93.6 bits (231), Expect = 3e-17
Identities = 74/255 (29%), Positives = 118/255 (46%), Gaps = 34/255 (13%)
Query: 764 LSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDHLARKCAAD 823
L W+ K L+LR H L+ CL + L D AAD
Sbjct: 802 LLWVTKALVLRYHP--------LSSCLTARLMGLL--------------SDPELGPAAAD 839
Query: 824 AFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYLLLRAFARV 883
F +LMSD D L R HA +R +++QRFF+ +P +Q + L + + V
Sbjct: 840 GFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYL-KGLSHV 898
Query: 884 MSVTPLIVILNDAKELISVLLDCLSM--LTEDIQDKDILYGLLLVLSGMLTEKNESLLFK 941
++ P V+L + L+S+LL+ LS + L LLL +++ ++L+ K
Sbjct: 899 LNRLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTK 958
Query: 942 AIQIKNDVNG*FLFLPILQLVRESCIQCLVALSKLPHVRIYPLRTQVLEAISKCLDDTKR 1001
+ + + + VR + +QC+ AL++LP + P + QV+ A++K LDD KR
Sbjct: 959 FLNLSSSPS---------MAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKR 1009
Query: 1002 SVRNEAVKCRQAWLV 1016
VR EAV R W +
Sbjct: 1010 LVRKEAVSARGEWFL 1024
>gb|AAK70402.1| transcriptional coactivator MMS19 [Homo sapiens]
gi|31543207|ref|NP_071757.2| MMS19-like (MET18 homolog,
S. cerevisiae) [Homo sapiens]
Length = 1030
Score = 114 bits (285), Expect = 2e-23
Identities = 61/185 (32%), Positives = 101/185 (53%), Gaps = 6/185 (3%)
Query: 7 AKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAERD 66
A ++ + Q +H QSL DR + ++ + + + SL D FGF +D E+D
Sbjct: 127 AVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIHVMDGEKD 186
Query: 67 PECLMPAFHIVESL-ARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDDL 125
P L+ AF IV L +R Y F ++F++ YFPI FT + + R+DL
Sbjct: 187 PRNLLVAFRIVHDLISRDYS-----LGPFVEELFEVTSCYFPIDFTPPPNDPHGIQREDL 241
Query: 126 SRTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGAI 185
+L +STP F F++PLL++K+ S + SAK+DSLQ L C + YG + + ++ ++
Sbjct: 242 ILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 301
Query: 186 WSSLK 190
W+S++
Sbjct: 302 WASIR 306
Score = 93.6 bits (231), Expect = 3e-17
Identities = 74/255 (29%), Positives = 118/255 (46%), Gaps = 34/255 (13%)
Query: 764 LSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDHLARKCAAD 823
L W+ K L+LR H L+ CL + L D AAD
Sbjct: 802 LLWVTKALVLRYHP--------LSSCLTARLMGLL--------------SDPELGPAAAD 839
Query: 824 AFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYLLLRAFARV 883
F +LMSD D L R HA +R +++QRFF+ +P +Q + L + + V
Sbjct: 840 GFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYL-KGLSHV 898
Query: 884 MSVTPLIVILNDAKELISVLLDCLSM--LTEDIQDKDILYGLLLVLSGMLTEKNESLLFK 941
++ P V+L + L+S+LL+ LS + L LLL +++ ++L+ K
Sbjct: 899 LNRLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTK 958
Query: 942 AIQIKNDVNG*FLFLPILQLVRESCIQCLVALSKLPHVRIYPLRTQVLEAISKCLDDTKR 1001
+ + + + VR + +QC+ AL++LP + P + QV+ A++K LDD KR
Sbjct: 959 FLNLSSSPS---------MAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKR 1009
Query: 1002 SVRNEAVKCRQAWLV 1016
VR EAV R W +
Sbjct: 1010 LVRKEAVSARGEWFL 1024
>gb|AAK52670.1| MMS19 [Mus musculus]
Length = 1031
Score = 114 bits (285), Expect = 2e-23
Identities = 62/184 (33%), Positives = 100/184 (53%), Gaps = 4/184 (2%)
Query: 7 AKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAERD 66
A ++ + Q +H QSL DR F ++ + + + L D FGF +D E+D
Sbjct: 128 AVSVLKAIFQEVHVQSLLQVDRHTVFSIITNFMRSREEELKGLGADFTFGFIQVMDGEKD 187
Query: 67 PECLMPAFHIVESLARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDDLS 126
P L+ AF IV L + D S F ++F++ YFPI FT + V R+DL
Sbjct: 188 PRNLLLAFRIVHDL--ISKDYS--LGPFVEELFEVTSCYFPIDFTPPPNDPYGVQREDLI 243
Query: 127 RTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGAIW 186
+L +STP F F++PLL++K+ S + SAK+DSLQ L C + YG + + ++ ++W
Sbjct: 244 LSLRAVLASTPRFAEFLLPLLIEKVDSEILSAKLDSLQTLNACCAVYGQKELKDFLPSLW 303
Query: 187 SSLK 190
+S++
Sbjct: 304 ASIR 307
Score = 94.7 bits (234), Expect = 1e-17
Identities = 75/255 (29%), Positives = 121/255 (47%), Gaps = 34/255 (13%)
Query: 764 LSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDHLARKCAAD 823
L W+ K L+LR H L+ CL + L D AAD
Sbjct: 803 LLWVTKALVLRYHP--------LSACLTTRLMGLL--------------SDPELGCAAAD 840
Query: 824 AFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYLLLRAFARV 883
F +LMSD D L R HA +R +++QRFF+ +P +Q + L + + V
Sbjct: 841 GFSLLMSDCTDVLTRAGHADVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYL-KGLSHV 899
Query: 884 MSVTPLIVILNDAKELISVLLDCLSMLTEDIQDKDI--LYGLLLVLSGMLTEKNESLLFK 941
++ P V+L + L+S+LL+ LS +Q + L LLL +++ ++L+ K
Sbjct: 900 LNRLPKPVLLPELPTLLSLLLEALSCPDSVVQLSTLSCLQPLLLEAPQIMSLHVDTLVTK 959
Query: 942 AIQIKNDVNG*FLFLPILQLVRESCIQCLVALSKLPHVRIYPLRTQVLEAISKCLDDTKR 1001
+ + + + VR + +QC+ AL++LP + P ++QV+ A++K LDD KR
Sbjct: 960 FLNLSSSYS---------MAVRIAALQCMHALTRLPTSVLLPYKSQVIRALAKPLDDKKR 1010
Query: 1002 SVRNEAVKCRQAWLV 1016
VR EAV R W +
Sbjct: 1011 LVRKEAVSARGEWFL 1025
>ref|NP_082428.1| MMS19 (MET18 S. cerevisiae)-like [Mus musculus]
gi|30048145|gb|AAH50817.1| MMS19 (MET18 S.
cerevisiae)-like [Mus musculus]
gi|26331856|dbj|BAC29658.1| unnamed protein product [Mus
musculus] gi|26326613|dbj|BAC27050.1| unnamed protein
product [Mus musculus] gi|26390300|dbj|BAC25875.1|
unnamed protein product [Mus musculus]
gi|12848081|dbj|BAB27822.1| unnamed protein product [Mus
musculus]
Length = 1031
Score = 114 bits (284), Expect = 2e-23
Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 4/184 (2%)
Query: 7 AKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAERD 66
A ++ + Q +H QSL DR F ++ + + + L D FGF +D E+D
Sbjct: 128 AVSVLKAIFQEVHVQSLLQVDRHTVFSIITNFMRSREEELKGLGADFTFGFIQVMDGEKD 187
Query: 67 PECLMPAFHIVESLARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDDLS 126
P L+ AF IV L + D S F ++F++ YFPI FT + + R+DL
Sbjct: 188 PRNLLLAFRIVHDL--ISKDYS--LGPFVEELFEVTSCYFPIDFTPPPNDPYGIQREDLI 243
Query: 127 RTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGAIW 186
+L +STP F F++PLL++K+ S + SAK+DSLQ L C + YG + + ++ ++W
Sbjct: 244 LSLRAVLASTPRFAEFLLPLLIEKVDSEILSAKLDSLQTLNACCAVYGQKELKDFLPSLW 303
Query: 187 SSLK 190
+S++
Sbjct: 304 ASIR 307
Score = 94.7 bits (234), Expect = 1e-17
Identities = 75/255 (29%), Positives = 121/255 (47%), Gaps = 34/255 (13%)
Query: 764 LSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDHLARKCAAD 823
L W+ K L+LR H L+ CL + L D AAD
Sbjct: 803 LLWVTKALVLRYHP--------LSACLTTRLMGLL--------------SDPELGCAAAD 840
Query: 824 AFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYLLLRAFARV 883
F +LMSD D L R HA +R +++QRFF+ +P +Q + L + + V
Sbjct: 841 GFSLLMSDCTDVLTRAGHADVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYL-KGLSHV 899
Query: 884 MSVTPLIVILNDAKELISVLLDCLSMLTEDIQDKDI--LYGLLLVLSGMLTEKNESLLFK 941
++ P V+L + L+S+LL+ LS +Q + L LLL +++ ++L+ K
Sbjct: 900 LNRLPKPVLLPELPTLLSLLLEALSCPDSVVQLSTLSCLQPLLLEAPQIMSLHVDTLVTK 959
Query: 942 AIQIKNDVNG*FLFLPILQLVRESCIQCLVALSKLPHVRIYPLRTQVLEAISKCLDDTKR 1001
+ + + + VR + +QC+ AL++LP + P ++QV+ A++K LDD KR
Sbjct: 960 FLNLSSSYS---------MAVRIAALQCMHALTRLPTSVLLPYKSQVIRALAKPLDDKKR 1010
Query: 1002 SVRNEAVKCRQAWLV 1016
VR EAV R W +
Sbjct: 1011 LVRKEAVSARGEWFL 1025
>emb|CAF92821.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1169
Score = 114 bits (284), Expect = 2e-23
Identities = 65/201 (32%), Positives = 110/201 (54%), Gaps = 4/201 (1%)
Query: 7 AKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAERD 66
A A+ + Q +H QSL L +R + +L L+E + L D +FGF ++D ERD
Sbjct: 119 AVAMLRAVFQDVHVQSLMLAERACVYSMLLNLMETREAELKGLGADFVFGFVQSMDGERD 178
Query: 67 PECLMPAFHIVESLARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDDLS 126
P L+ AF + +++ + + G F ++F++ YFPI FT + + ++ L
Sbjct: 179 PRNLLLAFQVAKNIIQRGYELGG----FTEEMFEVTSCYFPIDFTPPPNDPHGITKEQLV 234
Query: 127 RTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGAIW 186
TL + TP F F++PL+++KL S + SAK+DSLQ L C S+Y + +A+++ +W
Sbjct: 235 VTLRDVLVGTPKFAEFLLPLIIEKLDSDVQSAKLDSLQTLTACVSQYEHKDLAEFLEGLW 294
Query: 187 SSLKDTINTYLMEPNFSFTLA 207
+SL+ + E S +LA
Sbjct: 295 ASLRREVFQTASEKIESASLA 315
Score = 60.1 bits (144), Expect = 4e-07
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 23/160 (14%)
Query: 756 LQTNAVCGLSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDH 815
L+T A + W+ K LL+R H +T L L D+ L
Sbjct: 847 LRTQAFTLIIWVAKALLVRYHPLSSTLTDKLFSLLNDDQLGLL----------------- 889
Query: 816 LARKCAADAFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYL 875
AAD +LM+D+ D LNR HA +R +Y+QRFFS +Q + + +
Sbjct: 890 -----AADGLSLLMADSVDVLNRSCHADVRIMYRQRFFSENSAKLVQGFTEA-PGEKKPN 943
Query: 876 LLRAFARVMSVTPLIVILNDAKELISVLLDCLSMLTEDIQ 915
L+A + +++ P V + + L+S+LL+ LS + +Q
Sbjct: 944 YLKALSNIVNKLPKQVQVTELPALLSLLLEALSCPDQGVQ 983
>dbj|BAB26853.1| unnamed protein product [Mus musculus]
Length = 889
Score = 114 bits (284), Expect = 2e-23
Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 4/184 (2%)
Query: 7 AKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAERD 66
A ++ + Q +H QSL DR F ++ + + + L D FGF +D E+D
Sbjct: 128 AVSVLKAIFQEVHVQSLLQVDRHTVFSIITNFMRSREEELKGLGADFTFGFIQVMDGEKD 187
Query: 67 PECLMPAFHIVESLARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDDLS 126
P L+ AF IV L + D S F ++F++ YFPI FT + + R+DL
Sbjct: 188 PRNLLLAFRIVHDL--ISKDYS--LGPFVEELFEVTSCYFPIDFTPPPNDPYGIQREDLI 243
Query: 127 RTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGAIW 186
+L +STP F F++PLL++K+ S + SAK+DSLQ L C + YG + + ++ ++W
Sbjct: 244 LSLRAVLASTPRFAEFLLPLLIEKVDSEILSAKLDSLQTLNACCAVYGQKELKDFLPSLW 303
Query: 187 SSLK 190
+S++
Sbjct: 304 ASIR 307
Score = 44.7 bits (104), Expect = 0.016
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 22/99 (22%)
Query: 764 LSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDHLARKCAAD 823
L W+ K L+LR H L+ CL + L D AAD
Sbjct: 803 LLWVTKALVLRYHP--------LSACLTTRLMGLL--------------SDPELGCAAAD 840
Query: 824 AFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQ 862
F +LMSD D L R HA +R +++QRFF+ +P +Q
Sbjct: 841 GFSLLMSDCTDVLTRAGHADVRIMFRQRFFTDNVPALVQ 879
>ref|XP_534982.1| PREDICTED: similar to MMS19 [Canis familiaris]
Length = 999
Score = 113 bits (283), Expect = 3e-23
Identities = 60/185 (32%), Positives = 100/185 (53%), Gaps = 6/185 (3%)
Query: 7 AKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAERD 66
A ++ + Q +H QSL DR + ++ + + + L D FGF +D E+D
Sbjct: 82 AVSVLKAIFQEVHVQSLPQVDRHTVYSIITNFMRTREEELKGLGADFTFGFIQVMDGEKD 141
Query: 67 PECLMPAFHIVESL-ARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDDL 125
P L+ AF IV L +R Y F ++F++ YFPI FT + + R+DL
Sbjct: 142 PRNLLVAFRIVHDLISRDYS-----LGPFVEELFEVTSCYFPIDFTPPPNDPHGIQREDL 196
Query: 126 SRTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGAI 185
+L +STP F F++PLL++K+ S + SAK+DSLQ L C + YG + + ++ ++
Sbjct: 197 ILSLRAVLASTPRFAEFLLPLLIEKVDSEILSAKLDSLQTLNACCAVYGQKELKDFLPSL 256
Query: 186 WSSLK 190
W+S++
Sbjct: 257 WASIR 261
Score = 97.8 bits (242), Expect = 2e-18
Identities = 78/255 (30%), Positives = 124/255 (48%), Gaps = 34/255 (13%)
Query: 764 LSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDHLARKCAAD 823
L W+ K L+LR H L+ CL +DR L D AAD
Sbjct: 771 LLWVTKALVLRYHP--------LSSCL-TDRLMGL-------------LSDPELGPAAAD 808
Query: 824 AFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYLLLRAFARV 883
F +LMSD D L R HA +R +++QRFF+ +P +Q + S + L+ + V
Sbjct: 809 GFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAA-SQDVKPNYLKGLSHV 867
Query: 884 MSVTPLIVILNDAKELISVLLDCLSMLTEDIQDKDI--LYGLLLVLSGMLTEKNESLLFK 941
++ P V+L + L+S+LL+ LS +Q + L LLL +++ ++L+ K
Sbjct: 868 LNRLPKPVLLPELPTLLSLLLEALSCSDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLITK 927
Query: 942 AIQIKNDVNG*FLFLPILQLVRESCIQCLVALSKLPHVRIYPLRTQVLEAISKCLDDTKR 1001
+ + + + VR + +QC+ AL++LP + P + QV+ A++K LDD KR
Sbjct: 928 FLNLSSSPS---------MAVRIAALQCMHALTRLPTTVLLPYKPQVIRALAKPLDDKKR 978
Query: 1002 SVRNEAVKCRQAWLV 1016
VR EAV R W +
Sbjct: 979 LVRKEAVSARGEWFL 993
>gb|AAH78095.1| Mms19l-prov protein [Xenopus laevis]
Length = 1022
Score = 109 bits (273), Expect = 4e-22
Identities = 56/184 (30%), Positives = 99/184 (53%), Gaps = 4/184 (2%)
Query: 7 AKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAERD 66
A ++ + Q +H QSL DR + ++ ++ + + +L D +GF +D E+D
Sbjct: 119 AVSVLKSVFQEVHVQSLMQIDRHTVYMIITNFMKTREEELKNLGADFTYGFIQVMDGEKD 178
Query: 67 PECLMPAFHIVESLARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDDLS 126
P L+ AF+IV+ + + F ++F++ YFPI FT S + R+ L
Sbjct: 179 PRNLLVAFYIVQDIVT----KNYALGPFVEELFEVTSCYFPIDFTPPPSDPHGITREHLI 234
Query: 127 RTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGAIW 186
L +ST F F++PLL++K+ S + SAK+DSLQ L C + YG + + +++ +W
Sbjct: 235 MGLRAVLASTSRFAEFLLPLLIEKMDSEMQSAKLDSLQTLSACCTVYGQKELKEFLSGLW 294
Query: 187 SSLK 190
SS++
Sbjct: 295 SSIR 298
Score = 102 bits (253), Expect = 9e-20
Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 30/260 (11%)
Query: 757 QTNAVCGLSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDHL 816
+T A+ L W+ K L+LR H +T + L D
Sbjct: 787 RTQAITLLVWVTKALVLRYHPLSGQLTDKMIGLL----------------------SDQQ 824
Query: 817 ARKCAADAFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYLL 876
A+ F +L+SD+ D LN+ HA +R +++QRFF+ +P +Q + S + +
Sbjct: 825 LGPSVANMFSLLVSDSPDILNKACHADIRIMFRQRFFTENVPKLVQGFN-SANGDDKPNY 883
Query: 877 LRAFARVMSVTPLIVILNDAKELISVLLDCLSMLTEDIQDKDILYGLLLVLSGMLTEKNE 936
L+A + V++ P V++ + L+S+LL+ LS DK + L+ L +L E E
Sbjct: 884 LKALSHVLNTLPKQVLMPELPSLLSLLLEALSC-----PDKVVQLSTLICLEPLLQEAPE 938
Query: 937 SLLFKAIQIKNDVNG*FLFLPILQLVRESCIQCLVALSKLPHVRIYPLRTQVLEAISKCL 996
+L + + + G L VR + ++C++AL+KLP + P + QV+ A++K L
Sbjct: 939 TLKVHIDGLISKLLG--LSCSPAMAVRITALKCILALTKLPLHMLLPYKQQVIRALAKPL 996
Query: 997 DDTKRSVRNEAVKCRQAWLV 1016
DD KR VR EAV+ R W +
Sbjct: 997 DDKKRLVRKEAVETRCQWFL 1016
>emb|CAI14190.1| MMS19-like (MET18 homolog, S. cerevisiae) [Homo sapiens]
gi|57209132|emb|CAI40771.1| MMS19-like (MET18 homolog,
S. cerevisiae) [Homo sapiens]
Length = 299
Score = 108 bits (270), Expect = 9e-22
Identities = 61/185 (32%), Positives = 99/185 (52%), Gaps = 15/185 (8%)
Query: 7 AKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAERD 66
A ++ + Q +H QSL DR + ++ + + + SL D FGF +D E+D
Sbjct: 127 AVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQVMDGEKD 186
Query: 67 PECLMPAFHIVESL-ARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDDL 125
P L+ AF IV L +R Y F ++F++ YFPI FT R+DL
Sbjct: 187 PRNLLVAFRIVHDLISRDYS-----LGPFVEELFEVTSCYFPIDFTP---------REDL 232
Query: 126 SRTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGAI 185
+L +STP F F++PLL++K+ S + SAK+DSLQ L C + YG + + ++ ++
Sbjct: 233 ILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 292
Query: 186 WSSLK 190
W+S++
Sbjct: 293 WASIR 297
>ref|XP_636848.1| hypothetical protein DDB0187837 [Dictyostelium discoideum]
gi|60465245|gb|EAL63339.1| hypothetical protein
DDB0187837 [Dictyostelium discoideum]
Length = 1055
Score = 103 bits (256), Expect = 4e-20
Identities = 56/182 (30%), Positives = 94/182 (50%), Gaps = 4/182 (2%)
Query: 15 IQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAERDPECLMPAF 74
I +H SL RK+ +++D + + L+ D + G+ ID E+DP L+ +F
Sbjct: 110 ITEVHPTSLTQAHRKMVLQVIDIMFNKCLSEIQELKNDFMVGYLQFIDNEKDPRNLIFSF 169
Query: 75 HIVESLARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDDLSRTLMNAFS 134
++ + P+ F +F+++ YFPI F + + +DDLS +L+N FS
Sbjct: 170 KLLPKVIYNIPEHK----HFLESLFEIISCYFPISFNPKGNDPNSITKDDLSNSLLNCFS 225
Query: 135 STPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGAIWSSLKDTIN 194
TPL IP L+ K+ S+L KI++LQ L C +YG + ++ IWS+L+ I
Sbjct: 226 CTPLLAEHSIPFLIDKICSNLIETKIEALQTLVYCCDRYGGFAVQPFLEEIWSTLRTLIL 285
Query: 195 TY 196
T+
Sbjct: 286 TH 287
Score = 61.2 bits (147), Expect = 2e-07
Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 37/207 (17%)
Query: 821 AADAFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYLLLRAF 880
A+ +F +L+S+ D LN K + ++ + LQ IS S YL+ A
Sbjct: 876 ASKSFGILLSET-DVLNEKSGSIIKVSKNKE---------LQTIS------SHYLI--AI 917
Query: 881 ARVMSVTPLIVILNDAKELISVLLDCLSMLTEDIQDK-DILYGLLLVLSGMLTEKN---- 935
+ ++ P ++L + E++ +++ S+ + D D+ +L L L+ ++ E
Sbjct: 918 SNLLKHVPKEILLAELNEILPIVMQ--SLKSSDNNDQVQLLDSSLQTLTMLINETPSSFI 975
Query: 936 ---ESLLFKAIQIKNDVNG*FLFLPILQLVRESCIQCLVALSK-LPHVRIYPLRTQVLEA 991
+SL+ I+I L + S ++ L LSK +P V ++P +TQV+
Sbjct: 976 SYLDSLIPSLIKISTKSTKYNL--------KRSALEILTLLSKSIPFVNLFPYKTQVVTD 1027
Query: 992 ISKCLDDTKRSVRNEAVKCRQAWLVFQ 1018
I CLDD KR VR EA KCR +W + Q
Sbjct: 1028 IIPCLDDKKRIVRREAQKCRNSWYILQ 1054
>emb|CAH91091.1| hypothetical protein [Pongo pygmaeus]
Length = 872
Score = 101 bits (251), Expect = 1e-19
Identities = 53/148 (35%), Positives = 85/148 (56%), Gaps = 6/148 (4%)
Query: 44 DSVASLEEDLIFGFCAAIDAERDPECLMPAFHIVESL-ARLYPDPSGLFASFARDVFDLL 102
+ + SL D FGF +D E+DP L+ AF IV L +R Y F ++F++
Sbjct: 6 EELKSLGADFTFGFIQVMDGEKDPRNLLVAFRIVHDLISRDYS-----LGPFVEELFEVT 60
Query: 103 EPYFPIQFTHTTSGDAHVHRDDLSRTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDS 162
YFPI FT + + R+DL +L +STP F F++PLL++K+ S + SAK+DS
Sbjct: 61 SCYFPIDFTPPPNDPHGIQREDLILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDS 120
Query: 163 LQYLRVCSSKYGAERIAKYVGAIWSSLK 190
LQ L C + YG + + ++ ++W+S++
Sbjct: 121 LQTLNACCAVYGQKELKDFLPSLWASIR 148
Score = 94.7 bits (234), Expect = 1e-17
Identities = 75/255 (29%), Positives = 117/255 (45%), Gaps = 34/255 (13%)
Query: 764 LSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDHLARKCAAD 823
L W+ K L+LR H +T L LI D AAD
Sbjct: 644 LLWVTKALVLRYHPLSSCLTARLMGLLI----------------------DPELGPAAAD 681
Query: 824 AFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYLLLRAFARV 883
F +LMSD D L R HA +R +++QRFF+ +P +Q + L + + V
Sbjct: 682 GFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYL-KGLSHV 740
Query: 884 MSVTPLIVILNDAKELISVLLDCLSM--LTEDIQDKDILYGLLLVLSGMLTEKNESLLFK 941
++ P V+L + L+S+LL+ LS + L LLL +++ ++L+ K
Sbjct: 741 LNRLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTK 800
Query: 942 AIQIKNDVNG*FLFLPILQLVRESCIQCLVALSKLPHVRIYPLRTQVLEAISKCLDDTKR 1001
+ + + + VR + +QCL AL++LP + P + QV+ A++K LDD KR
Sbjct: 801 FLNLSSSSS---------MAVRIAALQCLHALTRLPTPVLLPYKPQVIRALAKPLDDKKR 851
Query: 1002 SVRNEAVKCRQAWLV 1016
VR EAV R W +
Sbjct: 852 LVRKEAVSARGEWFL 866
>dbj|BAB55315.1| unnamed protein product [Homo sapiens]
Length = 774
Score = 101 bits (251), Expect = 1e-19
Identities = 53/148 (35%), Positives = 85/148 (56%), Gaps = 6/148 (4%)
Query: 44 DSVASLEEDLIFGFCAAIDAERDPECLMPAFHIVESL-ARLYPDPSGLFASFARDVFDLL 102
+ + SL D FGF +D E+DP L+ AF IV L +R Y F ++F++
Sbjct: 6 EELKSLGADFTFGFIQVMDGEKDPRNLLVAFRIVHDLISRDYS-----LGPFVEELFEVT 60
Query: 103 EPYFPIQFTHTTSGDAHVHRDDLSRTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDS 162
YFPI FT + + R+DL +L +STP F F++PLL++K+ S + SAK+DS
Sbjct: 61 SCYFPIDFTPPPNDPHGIQREDLILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDS 120
Query: 163 LQYLRVCSSKYGAERIAKYVGAIWSSLK 190
LQ L C + YG + + ++ ++W+S++
Sbjct: 121 LQTLNACCAVYGQKELKDFLPSLWASIR 148
Score = 93.6 bits (231), Expect = 3e-17
Identities = 74/255 (29%), Positives = 118/255 (46%), Gaps = 34/255 (13%)
Query: 764 LSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDHLARKCAAD 823
L W+ K L+LR H L+ CL + L D AAD
Sbjct: 546 LLWVTKALVLRYHP--------LSSCLTARLMGLL--------------SDPELGPAAAD 583
Query: 824 AFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYLLLRAFARV 883
F +LMSD D L R HA +R +++QRFF+ +P +Q + L + + V
Sbjct: 584 GFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYL-KGLSHV 642
Query: 884 MSVTPLIVILNDAKELISVLLDCLSM--LTEDIQDKDILYGLLLVLSGMLTEKNESLLFK 941
++ P V+L + L+S+LL+ LS + L LLL +++ ++L+ K
Sbjct: 643 LNRLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTK 702
Query: 942 AIQIKNDVNG*FLFLPILQLVRESCIQCLVALSKLPHVRIYPLRTQVLEAISKCLDDTKR 1001
+ + + + VR + +QC+ AL++LP + P + QV+ A++K LDD KR
Sbjct: 703 FLNLSSSPS---------MAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKR 753
Query: 1002 SVRNEAVKCRQAWLV 1016
VR EAV R W +
Sbjct: 754 LVRKEAVSARGEWFL 768
>gb|AAH80532.1| MMS19L protein [Homo sapiens]
Length = 871
Score = 101 bits (251), Expect = 1e-19
Identities = 53/148 (35%), Positives = 85/148 (56%), Gaps = 6/148 (4%)
Query: 44 DSVASLEEDLIFGFCAAIDAERDPECLMPAFHIVESL-ARLYPDPSGLFASFARDVFDLL 102
+ + SL D FGF +D E+DP L+ AF IV L +R Y F ++F++
Sbjct: 6 EELKSLGADFTFGFIQVMDGEKDPRNLLVAFRIVHDLISRDYS-----LGPFVEELFEVT 60
Query: 103 EPYFPIQFTHTTSGDAHVHRDDLSRTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDS 162
YFPI FT + + R+DL +L +STP F F++PLL++K+ S + SAK+DS
Sbjct: 61 SCYFPIDFTPPPNDPHGIQREDLILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDS 120
Query: 163 LQYLRVCSSKYGAERIAKYVGAIWSSLK 190
LQ L C + YG + + ++ ++W+S++
Sbjct: 121 LQTLNACCAVYGQKELKDFLPSLWASIR 148
Score = 93.6 bits (231), Expect = 3e-17
Identities = 74/255 (29%), Positives = 118/255 (46%), Gaps = 34/255 (13%)
Query: 764 LSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDHLARKCAAD 823
L W+ K L+LR H L+ CL + L D AAD
Sbjct: 643 LLWVTKALVLRYHP--------LSSCLTARLMGLL--------------SDPELGPAAAD 680
Query: 824 AFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYLLLRAFARV 883
F +LMSD D L R HA +R +++QRFF+ +P +Q + L + + V
Sbjct: 681 GFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYL-KGLSHV 739
Query: 884 MSVTPLIVILNDAKELISVLLDCLSM--LTEDIQDKDILYGLLLVLSGMLTEKNESLLFK 941
++ P V+L + L+S+LL+ LS + L LLL +++ ++L+ K
Sbjct: 740 LNRLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTK 799
Query: 942 AIQIKNDVNG*FLFLPILQLVRESCIQCLVALSKLPHVRIYPLRTQVLEAISKCLDDTKR 1001
+ + + + VR + +QC+ AL++LP + P + QV+ A++K LDD KR
Sbjct: 800 FLNLSSSPS---------MAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKR 850
Query: 1002 SVRNEAVKCRQAWLV 1016
VR EAV R W +
Sbjct: 851 LVRKEAVSARGEWFL 865
>ref|XP_313296.2| ENSANGP00000010461 [Anopheles gambiae str. PEST]
gi|55241014|gb|EAA08941.2| ENSANGP00000010461 [Anopheles
gambiae str. PEST]
Length = 908
Score = 94.4 bits (233), Expect = 2e-17
Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Query: 27 DRKLCFELLDCLLEHHADSVASLEEDLIFGFCAAIDAERDPECLMPAFHIVESLARLYPD 86
+R L F+++ L E D + + D ++G AI+ ERDP L+ F + S R +P
Sbjct: 86 ERTLYFQMMLNLAERKVDELKAWGVDFVYGVIGAIEGERDPRNLLYLFERMPSFIRTFP- 144
Query: 87 PSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHVHRDDLSRTLMNAFSSTPLFEPFVIPL 146
A ++F+ YFPI F + + RD L+ L N +TP F +PL
Sbjct: 145 ----MYHLAEEMFETFACYFPIDFHPNPNDPVAITRDALAEHLANCLCATPEMAEFAVPL 200
Query: 147 LLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYVGAIWSSLK 190
L++KL SSL AK+DSL LR C ++ ++ +W++LK
Sbjct: 201 LMEKLDSSLIMAKLDSLSLLRKCLELLEVAKLEEHHDELWTALK 244
Score = 74.3 bits (181), Expect = 2e-11
Identities = 77/273 (28%), Positives = 117/273 (42%), Gaps = 43/273 (15%)
Query: 748 LGMTNDRLLQTN--AVCGLSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLD 805
L M + L + N AV LSWIGKGL+ RGH + +I + + L
Sbjct: 668 LKMIREELKKHNHQAVVILSWIGKGLIARGHSEAGEIVDDIADLL--------------- 712
Query: 806 ENNEEHKGDH-LARKCAADAFHVLMSDAEDCLNRKFHATM-RPLYKQRFFSSMMPIFLQL 863
DH AA AF +L + + H + R L+KQ+ F +M Q
Sbjct: 713 --------DHPTLGHIAALAFEILSIEFP-----QLHLPLLRNLFKQKLFVWVMKKLEQK 759
Query: 864 ISRSDSSSSRYLLLRAFARVMSVTPLIVILNDAKELISVLLDCLSMLTEDIQDKDILYGL 923
+ + + L+A A V++ TP V+ + ++ +LL CL+ DK IL L
Sbjct: 760 VEQYAETH-----LKALAFVLAATPHTVLKMNLSKVGPLLLKCLAQT----DDKTILEAL 810
Query: 924 LLVLSGMLTEKNESLLFKAIQIKNDVNG*FLFLPILQLVRESCIQCLVALSKLPHVRIYP 983
+VL T + + + +Q + +R ++CL+ + K P + P
Sbjct: 811 TIVLR--FTREQDPFVQDHLQTLIPLLLKLTLHQSSMKIRIGALECLLYVCKYPTFLLLP 868
Query: 984 LRTQVLEAISKCLDDTKRSVRNEAVKCRQAWLV 1016
+ VL A+ K LDD KR VRN AV R W V
Sbjct: 869 FKQSVLLALQKPLDDRKRLVRNAAVTTRLQWFV 901
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.326 0.141 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,568,600,590
Number of Sequences: 2540612
Number of extensions: 63483221
Number of successful extensions: 194534
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 194327
Number of HSP's gapped (non-prelim): 136
length of query: 1023
length of database: 863,360,394
effective HSP length: 138
effective length of query: 885
effective length of database: 512,755,938
effective search space: 453789005130
effective search space used: 453789005130
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 80 (35.4 bits)
Medicago: description of AC123570.3