BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122728.10 + phase: 0
(2239 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 2343 0.0
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 1654 0.0
ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica... 903 0.0
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera] 762 0.0
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 754 0.0
gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sati... 753 0.0
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 696 0.0
ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultiva... 695 0.0
ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cu... 693 0.0
gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonic... 692 0.0
ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultiva... 690 0.0
ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultiv... 690 0.0
ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (jap... 689 0.0
ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18... 687 0.0
gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cul... 687 0.0
ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultiva... 686 0.0
gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonic... 686 0.0
ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cu... 684 0.0
ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultiva... 679 0.0
gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultiva... 676 0.0
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 2343 bits (6071), Expect = 0.0
Identities = 1229/2316 (53%), Positives = 1577/2316 (68%), Gaps = 139/2316 (6%)
Query: 7 QLRTELASLREELAKAHDAMTALLAAQEQPVPVVSTAANVTPTVTTDPRSIMPSGYPYGL 66
Q++TELA +R +A+ M + QE+ +V VTP P +P G P
Sbjct: 3 QVQTELAEMRANMAQFMHMMQGVAQGQEELRALVQRQEAVTPP----PNQALPEGNP--- 55
Query: 67 PLYYTANTGAGTSGTTNNGPIPGANLTPVSTALTQA-ATTVTEPIVNAVP-------LFV 118
++ T + + G + A A A + P N +P LF
Sbjct: 56 -VHDTPAAAIPVNNYAVGEELMGIRVDGQPIAPDAANARVIHAPARNRIPIVDRQEDLFT 114
Query: 119 HANAHHGSIATTGNMEERMEELAKELRREIKANRGNGDSIKTQDLCLVSKVDVPKKFKVP 178
+ + +++ LA+++R N D ++ LV + +P KFK P
Sbjct: 115 MFSEDEDIPGRNDARDRKVDALAEKIRAMECQNSLGFD---VTNMGLVEGLRIPYKFKAP 171
Query: 179 EFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHYFQDSLMEDAAEWYTSLSKDDVHTFD 238
FDKYNG +CP+ H+ Y RK+ Y D++ + +++FQDSL + +WY L D + +
Sbjct: 172 SFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKSDSIRCWR 231
Query: 239 ELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQT 298
+L AF Y N + P+R L+SL QK ESF+EYAQRWR AAR+ P + E E+T
Sbjct: 232 DLGEAFLRQYKHNMDMAPSRTQLQSLCQKSNESFKEYAQRWRELAARVQPPMLERELTDM 291
Query: 299 FLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESSVNASKRYGNGHH 358
F+ TL+ +++RM +FS++V G R E ++ G I + ++SK+ G
Sbjct: 292 FIGTLQGVFMDRMGSCPFGSFSDVVICGERTESLIKTGKI----QDVGSSSSKKPFAGAP 347
Query: 359 KKKETEVGMVSAGAGQSMATVAPINATQMPPSYPYMPYSQHPFFPPFYHQYPLPPGQPQV 418
+++E E V Q+ A +P P Q P
Sbjct: 348 RRREGETNAVQHRRDQNRIEYRQAAAVTIPAPQPRQQQQQRVQQP--------------- 392
Query: 419 PVNAIAQQMKQQMPVQQQQQNQQARPTFPPIPMLYAELLPTLLQRGH---CTTRQGKPPP 475
QQ +QQ P Q +Q+ R F +PM YAELLP LL+ G CT PP
Sbjct: 393 ------QQQQQQRPYQPRQRMPDRR--FDSLPMSYAELLPELLRLGLVELCTMA----PP 440
Query: 476 DPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNH 535
LPP + ++++CDFH GA GH E C AL++ V+ LID + F VP+V++NP+P H
Sbjct: 441 TVLPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLIDANAINFAP-VPNVVNNPMPQH 499
Query: 536 A--TVNMIEVCEEAPRLD-VRNVATPLVPLHIKLRKASLFNHDHAKCLGCLRDPLGCYTV 592
VN IE E +D V +V T L+ + +L +++ CLGC GC +
Sbjct: 500 GGHRVNNIEGKEAEDLVDNVDDVQTSLLVVKSRLLNEGVYSGCDEDCLGCAESENGCDQL 559
Query: 593 QEDIQSLMNDNLLTVS-------DVCVIVPVF-----HDPPVKSTPLKKNAEPLVIRLP- 639
+ IQ +M++ L S V I F H V S P N P+ I +P
Sbjct: 560 RAGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPSEGHGQRVVSAPAT-NGTPVTIPVPV 618
Query: 640 -----------GPIPYVSDKAVPYKY-----------------NATMIENGV--EVPLAS 669
G + +AVP+KY N T + G+ VP
Sbjct: 619 TISAPTTIVASGRRAVENSRAVPWKYDNAYRSNRRVESQTKPVNQTPVTIGLANRVPATV 678
Query: 670 FATVSNIAEGTSAALRSGKVRPPLFQKKVATPIIPPVEEATPTVVSPIATDVSQPGKSIE 729
V N+ G RSG++ P + + + VV P S E
Sbjct: 679 GPAVDNVG-GPGGFTRSGRLFAPQPLRDNNAEALAKAK-GKQAVVEEEPVQKEAPEGSFE 736
Query: 730 DSNLDEILRIIKRSDYKIVDQLLQTPSKISVLSLLLSSEAHRNTLLKVLEQAYVDHEVTV 789
+++E +++IK+SDYKIVDQL QTPSKIS+LSLLL SEAHRN LLK+L AYV E++V
Sbjct: 737 -KDVEEFMKMIKKSDYKIVDQLNQTPSKISILSLLLCSEAHRNALLKMLNLAYVPQEISV 795
Query: 790 DRFGGIVGNITACNNLWFSEEELPEVGKSHNLALHISLNCKSDMISNVLVDTGSSLNVMP 849
++ G++ N++ + + F+ +LP G++HN ALHI++ CK ++S+VLVDTGSSLNV+P
Sbjct: 796 NQLEGVMANVSTRHGVGFTNLDLPPEGRNHNKALHITMECKGAVLSHVLVDTGSSLNVLP 855
Query: 850 KTTLDQLSYRGTPLRRSTFLVKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYS 909
K L ++ G L S +V+AFD S+++V GE+ LP+ IGPE F + F VMDI +YS
Sbjct: 856 KQILKKIDVEGFVLTPSDLIVRAFDRSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYS 915
Query: 910 CLLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTIHGEEAYLVSQLSSFSCVEA-GSAEGT- 967
CLLGRPWIH AGAV+STLHQKLK+V NG++VT+ GEE LVS LSSF VE G T
Sbjct: 916 CLLGRPWIHAAGAVSSTLHQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHETL 975
Query: 968 --AFQGLTIES---AESKEAGAAMASLKDAQRAIQEGQTAGWGKMIQLCENKRKEGLGFS 1022
F+ + +E AE ++ G ++ S K A+ + G+ GWGKM+ L + K G+G+
Sbjct: 976 CQVFETVALEKVAYAEQRKPGVSITSYKQAKEVVDSGKAEGWGKMVDLPVKEDKFGVGYE 1035
Query: 1023 PSSRVSSG-----VFHSAGFVNAISEEATGSG-----------LRPAFVTPGGIATNWDA 1066
P +G F SAG +N ATGS +RP PGG NW A
Sbjct: 1036 PLQAEQNGQAGPSTFTSAGLMNHGDVSATGSEDCDSDCDLDNWVRPC--APGGSINNWTA 1093
Query: 1067 IDIPSIMHVSELNHNKPVEHSNPTVPPSFDFPVYEAEDEEGDN--IPYEITRLLEQEKKA 1124
++ + ++E + + + FD P+Y+AE+E ++ +P E+ RLL+QE++
Sbjct: 1094 EEVVQVTLLTESDLMAFTMNGSVIAQYDFDNPIYQAEEESEEDCELPAELVRLLKQEERV 1153
Query: 1125 IQPHQEEIELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPM 1184
IQPHQEE+E++N+GTE+ REIKIGA LE+ VK+++I++LREY +IFAWSY+DMPGLD
Sbjct: 1154 IQPHQEELEVVNLGTEDATREIKIGAALEDSVKRRLIEMLREYVEIFAWSYQDMPGLDTD 1213
Query: 1185 IVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPK 1244
IV HR+P + CP V+QKLRRT PDMA KIK EVQKQ DAGFL YP W+ANIVPVPK
Sbjct: 1214 IVVHRLPLREGCPSVKQKLRRTSPDMATKIKEEVQKQWDAGFLAVTSYPPWMANIVPVPK 1273
Query: 1245 KDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDR 1304
KDGKVRMCVD+RDLN+ASPKD+FPLPHIDVLVDNTAQS VFSFMDGFSGYNQIKM+PED
Sbjct: 1274 KDGKVRMCVDYRDLNRASPKDDFPLPHIDVLVDNTAQSSVFSFMDGFSGYNQIKMAPEDM 1333
Query: 1305 EKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQ 1364
EKT+FITPWGTFCYKVMPFGL NAGATYQR MTTLFHDM+HKE+EVYVDDMI KS EE+
Sbjct: 1334 EKTTFITPWGTFCYKVMPFGLKNAGATYQRAMTTLFHDMMHKEIEVYVDDMIAKSQTEEE 1393
Query: 1365 HVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQ 1424
H+ L K+F+RLRK+KLRLNPNKCTFGVRSGKLLGFIVS+KGIEVDP KV+AI+EMP P+
Sbjct: 1394 HLVNLQKLFDRLRKFKLRLNPNKCTFGVRSGKLLGFIVSEKGIEVDPAKVKAIQEMPEPK 1453
Query: 1425 TEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPP 1484
TEKQVRGFLGRLNYI+RFISH+TATC PIFKLLRKNQ I WND+CQ+AFD IK YL +PP
Sbjct: 1454 TEKQVRGFLGRLNYIARFISHLTATCEPIFKLLRKNQAIKWNDDCQKAFDKIKEYLQKPP 1513
Query: 1485 ILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTC 1544
IL+PPV GRPLIMYL+V + SMGCVLG+ DE+G+KEHAIYYLSKKFTDCETRY++LEKTC
Sbjct: 1514 ILIPPVPGRPLIMYLSVTENSMGCVLGRHDESGRKEHAIYYLSKKFTDCETRYSLLEKTC 1573
Query: 1545 CALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKA 1604
CALAWAA+RLR Y++NHTT LIS+MDP+KYIFEK A+TG++ARWQM+L+EYDI + +QKA
Sbjct: 1574 CALAWAARRLRQYMLNHTTLLISKMDPVKYIFEKPALTGRVARWQMILTEYDIQYTSQKA 1633
Query: 1605 IKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGA 1664
IKGSIL+D+LA QP++DYQ + F+FPDE+IMYLK KDC+EPL+ EGPDP+ KW L+FDGA
Sbjct: 1634 IKGSILSDYLAEQPIEDYQPMMFEFPDEDIMYLKMKDCKEPLVEEGPDPDDKWTLMFDGA 1693
Query: 1665 VNAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGD 1724
VN G G+GAV+++P+G H+PF+AR+ F+ TNN AEYEACI GIEEAID+RIK LDI+GD
Sbjct: 1694 VNMNGNGVGAVLINPKGAHMPFSARLTFDVTNNEAEYEACIMGIEEAIDLRIKTLDIFGD 1753
Query: 1725 SALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFR 1784
SALV+NQ+ G+W T+ LIPY DY RR+LT+F KV+L+H+PRDENQMADALATLSSM +
Sbjct: 1754 SALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVKLYHVPRDENQMADALATLSSMIK 1813
Query: 1785 VNHWNDVPIIKGQRLERPSHVFAIGDVIDQAGENVVGYRPWYYDIKQFLLSREYPPGASK 1844
VN WN VP + RLERP++VFA V V+ +PWYYDIK FL ++EYP GASK
Sbjct: 1814 VNWWNHVPHVAVNRLERPAYVFAAESV-------VIDEKPWYYDIKNFLKTQEYPEGASK 1866
Query: 1845 QDKKTLRRLAGRFLLD-GDILYKRNYDMVLLRCVDEHEAEQLVHDVHDGTFGTHATGHTM 1903
DKKTLRRLAG F L+ D+LYKRN+DMVLLRC+D EA+ L+ +VH+G+FGTHA GH M
Sbjct: 1867 NDKKTLRRLAGSFYLNQDDVLYKRNFDMVLLRCMDRPEADMLMQEVHEGSFGTHAGGHAM 1926
Query: 1904 SRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIG 1963
++KLLRAGYYWM ME DC++YARKCHKCQIYAD++HVPP LNVM+SPWPF+MWGIDMIG
Sbjct: 1927 AKKLLRAGYYWMTMESDCFKYARKCHKCQIYADRVHVPPSPLNVMNSPWPFAMWGIDMIG 1986
Query: 1964 RIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNG 2023
+IEP ASNGHRFILVAIDYFTKWVEAASY N+TKQVV +FIK IICRYGVP +IITDNG
Sbjct: 1987 KIEPTASNGHRFILVAIDYFTKWVEAASYANITKQVVTRFIKKEIICRYGVPERIITDNG 2046
Query: 2024 TNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKDWHEMLPY 2083
+NLNN +++ LC++FKIEHHNSSPYRP+MNGAVEAANKNIK+IV+KMV TYKDWHEMLP+
Sbjct: 2047 SNLNNKMMKELCKDFKIEHHNSSPYRPKMNGAVEAANKNIKKIVRKMVVTYKDWHEMLPF 2106
Query: 2084 ALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNL 2143
ALHGYRT+VR+STGATP+SLVYGMEAVLP+EVEIPSLRV+++ KL EAEW ++R+++L+L
Sbjct: 2107 ALHGYRTSVRTSTGATPYSLVYGMEAVLPVEVEIPSLRVLLDVKLDEAEWIRTRFNELSL 2166
Query: 2144 IEEKRMDAMARGHSYQARMKAAFDKKVNPREFKVGELVLKRRISQQPDPRGKWTPNYEGP 2203
IEE+R+ + G YQ RMK AFD+KV PR +++G+LVLKR + D RGKWTPNYEGP
Sbjct: 2167 IEERRLAVVCHGQLYQRRMKRAFDQKVRPRSYQIGDLVLKRILPPGTDNRGKWTPNYEGP 2226
Query: 2204 YVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2239
YVVKK FSGGAL+LT MDG + P+PVN+D+VKKYFA
Sbjct: 2227 YVVKKVFSGGALMLTTMDGEDFPSPVNSDVVKKYFA 2262
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 1654 bits (4283), Expect = 0.0
Identities = 910/1857 (49%), Positives = 1194/1857 (64%), Gaps = 127/1857 (6%)
Query: 7 QLRTELASLREELAKAHDAMTALLAAQEQPVPVVSTAANVTPTVTTDPRSIMPSGYPYG- 65
Q++ ELA ++ +A+ + M + QE+ +V P V P P G P
Sbjct: 3 QVQAELAEMKANMAQFMNMMQGVAQGQEELRALVQRQEAAIPPVNHAP----PEGGPVNG 58
Query: 66 ------LPLYYTANTGAGTSGTTNNGPIPGANLTPVSTALTQAATTVTEPIVNAVPLFVH 119
+P+ A G G NG P++ + A V P N P+
Sbjct: 59 NNVAAAVPINNYA-VGDELGGIRINGQ-------PIAPDVANARA-VRAPARNPAPIVDR 109
Query: 120 ANAHHGSIATTGNMEERMEELAKE---LRREIKANR-GNGDSIKTQDLCLVSKVDVPKKF 175
++ ++ R++E ++ L +I+A N ++ LV + +P KF
Sbjct: 110 QEDMFSLLSEDEDVLGRVDERDRKVDALAEKIRAMECQNSLGFDVTNMGLVEGLRIPYKF 169
Query: 176 KVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHYFQDSLMEDAAEWYTSLSKDDVH 235
K P FDKYNG +CP+ H+ Y RK+ Y D++ + +++FQDSL + +WY L +D +
Sbjct: 170 KAPSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKRDSIR 229
Query: 236 TFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEM 295
+ +L AF Y N + P+R L+SL QK ESF+EYAQRWR AAR+ P + E E+
Sbjct: 230 CWKDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSGESFKEYAQRWRELAARVQPPMLEREL 289
Query: 296 TQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESSVNASKRYGN 355
T F+ TL+ +++RM +FS++V G R E ++ G I ++ ++SK+
Sbjct: 290 TDMFIGTLQGVFMDRMGSCPFVSFSDVVICGERTESLIKTGKI----QDAGSSSSKKPFA 345
Query: 356 GHHKKKETEVGMVSAGAGQSMATVAPINATQMPPSYPYMPYSQHPFFPPFYHQYPLPPGQ 415
G +++E E V Q+ + + A +P P P Q
Sbjct: 346 GAPRRREGETNAVQYRRDQNRSQRCQVAAVTIPA--------------------PQPRQQ 385
Query: 416 PQVPVNAIAQQMKQQMPVQQQQQNQQARPTFPPIPMLYAELLPTLLQRGHCTTRQGKPPP 475
Q V QQ +QQ P Q +Q+ R F +PM YAELLP LL+ G R PP
Sbjct: 386 QQQRVQQPQQQQQQQRPYQPRQRMPDRR--FDSLPMSYAELLPELLRLGMVELRT-MAPP 442
Query: 476 DPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNH 535
LPP + ++++CDFH GA GH E C AL++ V+ LID + F VP+V++NP+P H
Sbjct: 443 TVLPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLIDAKAINFAP-VPNVVNNPMPQH 501
Query: 536 A--TVNMIEVCE-EAPRLDVRNVATPLVPLHIKLRKASLFNHDHAKCLGCLRDPLGCYTV 592
VN IE E E ++V +V T L+ + +L +++ CLGC GC +
Sbjct: 502 GGHRVNNIEGKEAEDLVVNVDDVQTSLLVVKGRLLNGGVYSGCDEDCLGCAESENGCDQL 561
Query: 593 QEDIQSLMNDNLL----------TVSDVCVIVP--------VFHDPPVKSTPLKKN---- 630
+ IQ +M++ L TVS + + V P TP+ +
Sbjct: 562 RTGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPSEGRGQRVVSAPATNGTPVTISVPVT 621
Query: 631 -AEPLVIRLPGPIPYVSDKAVPYKY-----------------NATMIENGV--EVPLASF 670
+ P I G + +AVP+KY N + G+ VP
Sbjct: 622 ISAPTTIAASGRRAVENSRAVPWKYDNAYRSNRRAESQTRPVNQAPVTIGLPNRVPATVG 681
Query: 671 ATVSNIAEGTSAALRSGKVRPPLFQKKVATPIIPPVEEATPTVVSPIATDVSQPGKSIED 730
V N+ G RSG++ P + + + VV P S E
Sbjct: 682 PAVDNVG-GPGGFTRSGRLFAPQPLRDNNAEALAKAK-GKQAVVEEEPVQKEAPEGSFE- 738
Query: 731 SNLDEILRIIKRSDYKIVDQLLQTPSKISVLSLLLSSEAHRNTLLKVLEQAYVDHEVTVD 790
+++E ++IIK+SDYKIVDQL QTPSKIS+LSLLL SEAHRN LLK+L AYV E++V+
Sbjct: 739 KDVEEFMKIIKKSDYKIVDQLNQTPSKISILSLLLCSEAHRNALLKMLNLAYVPQEISVN 798
Query: 791 RFGGIVGNITACNNLWFSEEELPEVGKSHNLALHISLNCKSDMISNVLVDTGSSLNVMPK 850
+ G++ N++ + + F+ +L G++HN ALHI++ CK ++S+VLVDTGSSLNV+PK
Sbjct: 799 QLEGVMANVSTRHGVGFTNLDLTPEGRNHNKALHITMECKGAVLSHVLVDTGSSLNVLPK 858
Query: 851 TTLDQLSYRGTPLRRSTFLVKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSC 910
L ++ G L S +V+AFDGS+++V GE+ LP+ IGPE F + F VMDI +YSC
Sbjct: 859 QILKKIDVEGFVLTPSDLIVRAFDGSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYSC 918
Query: 911 LLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTIHGEEAYLVSQLSSFSCVEA-GSAEGT-- 967
LLGRPWIH AGAV+STLHQKLK+V NG++VT+ GEE LVS LSSF VE G T
Sbjct: 919 LLGRPWIHAAGAVSSTLHQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHETLC 978
Query: 968 -AFQGLTIES---AESKEAGAAMASLKDAQRAIQEGQTAGWGKMIQLCENKRKEGLGFSP 1023
AF+ + +E AE ++ GA++ S K A+ + G+ GWGKM+ L + K G+G+ P
Sbjct: 979 QAFETVALEKVAYAEQRKPGASITSYKQAKEVVDSGKAEGWGKMVYLPVKEDKFGVGYEP 1038
Query: 1024 SSRVSSG-----VFHSAGFVNAISEEATGSG-----------LRPAFVTPGGIATNWDAI 1067
+G F SAG +N ATGS +RP PGG NW A
Sbjct: 1039 LQAEQNGQAGPSTFTSAGLMNHGDVSATGSEDCDSDCDLDNWVRPC--APGGSINNWTAE 1096
Query: 1068 DIPSIMHVSELNHNKPVEHSNPTVPPSFDFPVYEAEDEEGDN--IPYEITRLLEQEKKAI 1125
++ + ++E + +++ F P+Y+AE+E ++ +P E+ RLL QE++ I
Sbjct: 1097 EVVQVTLLTESDLMAFTMNNSVMAQYDFGNPIYQAEEESEEDCELPAELVRLLRQEERVI 1156
Query: 1126 QPHQEEIELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMI 1185
QPHQEE+E++N+GTE+ KREIKIGA LE+ VK+++I++LREY +IFAWSY+DMPGLD I
Sbjct: 1157 QPHQEELEVVNLGTEDAKREIKIGAALEDSVKRRLIEMLREYVEIFAWSYQDMPGLDTDI 1216
Query: 1186 VEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKK 1245
V HR+P + CP V+QKLRRT PDMA KIK EVQKQ DAGFL YP WVANIVPVPKK
Sbjct: 1217 VVHRLPLREGCPSVKQKLRRTSPDMATKIKEEVQKQWDAGFLAVTSYPPWVANIVPVPKK 1276
Query: 1246 DGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDRE 1305
DGKVRMCVD+RDLN+ASPKD+FPLPHIDVLVDNTAQS VFSFMDGFSGYNQIKM+PED E
Sbjct: 1277 DGKVRMCVDYRDLNRASPKDDFPLPHIDVLVDNTAQSSVFSFMDGFSGYNQIKMAPEDME 1336
Query: 1306 KTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQH 1365
KT+FITPWGTF YKVMPFGL NAGATYQR MTTLFHDM+HKE+EVYVDDMI KS EE+H
Sbjct: 1337 KTTFITPWGTFYYKVMPFGLKNAGATYQRAMTTLFHDMMHKEIEVYVDDMIAKSQTEEEH 1396
Query: 1366 VEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQT 1425
+ L K+F+RLRK+KLRLNPNKCTFGVRSGKLLGFIVS+KGIEVDP KV+AI+EMP P+T
Sbjct: 1397 LVNLQKLFDRLRKFKLRLNPNKCTFGVRSGKLLGFIVSEKGIEVDPAKVKAIQEMPEPKT 1456
Query: 1426 EKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPI 1485
EKQVRGFLGRLNYI+RFISH+TATC PIFKLLRKNQ I WND+CQ+AFD IK YL +PPI
Sbjct: 1457 EKQVRGFLGRLNYIARFISHLTATCEPIFKLLRKNQAIKWNDDCQKAFDKIKEYLQKPPI 1516
Query: 1486 LVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCC 1545
L PPV GRPLIMYL+V + SMGCVLGQ DE+G+KEHAIYYLSKKFTDCETRY++LEKTCC
Sbjct: 1517 LTPPVPGRPLIMYLSVTENSMGCVLGQHDESGRKEHAIYYLSKKFTDCETRYSLLEKTCC 1576
Query: 1546 ALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAI 1605
ALAWAA+RLR Y++NHTT LIS+MDP+KYIFEK A+TG++ARWQM+L+EYDI + +QKAI
Sbjct: 1577 ALAWAARRLRQYMLNHTTLLISKMDPVKYIFEKPALTGRVARWQMILTEYDIQYTSQKAI 1636
Query: 1606 KGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAV 1665
KGSIL+D+LA QP++DYQ + F+FPDE+IMYLK KDCEEPL+ EGPDP+ KW L+FDGAV
Sbjct: 1637 KGSILSDYLAEQPIEDYQPMMFEFPDEDIMYLKVKDCEEPLVEEGPDPDDKWTLMFDGAV 1696
Query: 1666 NAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDS 1725
N G G+GAV+++P+G HIPF+AR+ F+ TNN AEYEACI GIEEAID+RIK LDIYGDS
Sbjct: 1697 NMNGNGVGAVLINPKGAHIPFSARLTFDVTNNEAEYEACIMGIEEAIDLRIKTLDIYGDS 1756
Query: 1726 ALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHHIPRDENQMADALATLSSM 1782
ALV+NQ+ G+W T+ LIPY DY RR+LT+F KV L+H+PRDENQMADALATLSSM
Sbjct: 1757 ALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVRLYHVPRDENQMADALATLSSM 1813
>ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9927274|dbj|BAB08213.2| Similar to Arabidopsis
thaliana chromosome II BAC F26H6; putative retroelement
pol polyprotein (AC006920) [Oryza sativa (japonica
cultivar-group)]
Length = 2876
Score = 903 bits (2334), Expect = 0.0
Identities = 480/1140 (42%), Positives = 685/1140 (59%), Gaps = 37/1140 (3%)
Query: 1113 EITRLLEQEKKAIQPHQEEIELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFA 1172
++ L+Q QP +E+ +N+GTE++ R I + L E ++ L E+ D FA
Sbjct: 1759 DVAGALKQLDDGGQPTIDELVEMNLGTEDDPRPIFVSGMLTEEEREDYRSFLMEFRDCFA 1818
Query: 1173 WSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEY 1232
W+Y++MPGLD + H++ P+ PV+Q RR P+ ++ +EV + I+ GF+ ++Y
Sbjct: 1819 WTYKEMPGLDSRVATHKLAIDPQFRPVKQPPRRLRPEFQDQVIAEVDRLINVGFIKEIQY 1878
Query: 1233 PEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFS 1292
P W+ANIVPV KK+G+VR+CVDFRDLN+A PKD+FPLP +++VD+T S
Sbjct: 1879 PRWLANIVPVEKKNGQVRVCVDFRDLNRACPKDDFPLPITEMVVDSTTG------YGALS 1932
Query: 1293 GYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYV 1352
GYNQIKM D T+F TP G F Y VMPFGL NAGATYQR M + D+IH VE YV
Sbjct: 1933 GYNQIKMDLLDAFDTAFRTPKGNFYYTVMPFGLKNAGATYQRAMQFVLDDLIHHSVECYV 1992
Query: 1353 DDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPD 1412
DDM+VK+ D E H E L +FERLR+++L++NP KC F V+SG LGF++ +GIE++P
Sbjct: 1993 DDMVVKTKDHEHHQEDLRIVFERLRRHQLKMNPLKCAFAVQSGVFLGFVIRHRGIEIEPK 2052
Query: 1413 KVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEA 1472
K++AI MP PQ K +R G+L YI RFIS+++ P KL++K P VW++ECQ
Sbjct: 2053 KIKAILNMPPPQELKDLRKLQGKLAYIRRFISNLSGRIQPFSKLMKKGTPFVWDEECQNG 2112
Query: 1473 FDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTD 1532
FDSIK YLL PP+L PV+GRPLI+Y+A S+G +L Q ++ G KE A YYLS+
Sbjct: 2113 FDSIKRYLLNPPVLAAPVKGRPLILYIATQPASIGALLAQHNDEG-KEVACYYLSRTMVG 2171
Query: 1533 CETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLL 1592
E Y+ +EK C AL +A K+LRHY++ H LI+R DPI+Y+ + +TG++ +W +L+
Sbjct: 2172 AEQNYSPIEKLCLALIFALKKLRHYMLAHQIQLIARADPIRYVLSQPVLTGRLGKWALLM 2231
Query: 1593 SEYDIVFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEEPLINEGPD 1652
EYDI F QKAIKG LA+ LA P+ D + + PDEEI + ++
Sbjct: 2232 MEYDITFVPQKAIKGQALAEFLATHPMPDDSPLIANLPDEEIFTAELQE----------- 2280
Query: 1653 PNSKWGLVFDGA----VNAYG-----KGMGAVIVSPQGHHIPFTARIL-FECTNNMAEYE 1702
+W L FDGA +N G G G V +PQG I + +L EC+NN AEYE
Sbjct: 2281 ---QWELYFDGASRKDINPDGTPRRRAGAGLVFKTPQGGVIYHSFSLLKEECSNNEAEYE 2337
Query: 1703 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVEL 1762
A IFG+ A+ M ++ L +GDS L+I QI +E +L+PY+ ARRL+ F +E+
Sbjct: 2338 ALIFGLLLALSMEVRSLRAHGDSRLIIRQINNIYEVRKPELVPYYTVARRLMDKFEHIEV 2397
Query: 1763 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKGQRLERPSHVFAIGDVIDQAGENVVGY 1822
H+PR +N ADALA L++ N I+ +R P+ + I + ++ N
Sbjct: 2398 IHVPRSKNAPADALAKLAAALVFQGDNPAQIVVEERWLLPAVLELIPEEVNIIITNSAEE 2457
Query: 1823 RPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDM-VLLRCVDEHE 1881
W + P +++ L+R ++ +LYKR+Y VLLRCVD E
Sbjct: 2458 EDWRQPFLDYFKHGSLP--EDPVERRQLQRRLPSYIYKAGVLYKRSYGQEVLLRCVDRSE 2515
Query: 1882 AEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVP 1941
A +++ +VH G G H +G M + GYYW + DC + A+ CH CQI+ + H P
Sbjct: 2516 ANRVLQEVHHGVCGGHQSGPKMYHSIRLVGYYWPGIMADCLKTAKTCHGCQIHDNFKHQP 2575
Query: 1942 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 2001
P L+ WPF WGID+IG I P +S GHRFIL A DYF+KW EA V V
Sbjct: 2576 PAPLHPTVPSWPFDAWGIDVIGLINPPSSRGHRFILTATDYFSKWAEAVPLREVKSSDVI 2635
Query: 2002 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 2061
F++ +II R+GVP +I +DN + + E++KI+ + S+ Y PQ NG EA NK
Sbjct: 2636 NFLERHIIYRFGVPHRITSDNAKAFKSQKIYRFMEKYKIKWNYSTGYYPQANGMAEAFNK 2695
Query: 2062 NIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2120
+ +I++K V + +DWH+ L AL YR TVR+ T ATP+SLVYG EAVLPLE+++PSL
Sbjct: 2696 TLGKILKKTVDKHRRDWHDRLYEALWAYRVTVRTPTQATPYSLVYGNEAVLPLEIQLPSL 2755
Query: 2121 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPREFKVGE- 2179
RV + +L++ E + R+ +L+ +EE+R+ A+ Y+ M A+DK V R F+ GE
Sbjct: 2756 RVAIHDELTKDEQIRLRFQELDAVEEERLGALQNLELYRQNMVRAYDKLVKQRVFRKGEL 2815
Query: 2180 -LVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2238
LVL+R I +GK+ P +EGPYV+++A+ GGA L G + P+N +KKYF
Sbjct: 2816 VLVLRRPIVVTHKMKGKFEPKWEGPYVIEQAYDGGAYQLIDHQGSQPMPPINGRFLKKYF 2875
Score = 115 bits (288), Expect = 2e-23
Identities = 85/288 (29%), Positives = 136/288 (46%), Gaps = 21/288 (7%)
Query: 678 EGTSAALRSGKVRPPLFQKKVATPIIPPVEEATPTVVSPIATDVSQPGKSIEDSNLDEIL 737
E + +LR GK P + KV + P ++A+P +P A + K
Sbjct: 1252 EEVNISLRGGKTLPDPHKSKVPN-VDKPAKKASPPGEAPEAPETKTGSKEKP-------- 1302
Query: 738 RIIKRSDYKIVDQLLQTPSKISVLSLLLSSEAHRNTLLKVLEQAYVDHEVTVDRFGGIVG 797
DYK++ L + P+ +SV L+ R L+K L+ V +EV + + +
Sbjct: 1303 ----AVDYKVLAHLKRIPALLSVYDALMMVPDLREALIKALQAPEV-YEVDMAKHR-LYD 1356
Query: 798 NITACNNLWFSEEELPEVGKSHNLALHISLNCKSDMISNVLVDTGSSLNVMPKTTLDQLS 857
N N + F++E+ G HN L+I N S + +L+D GS++N++P +L +
Sbjct: 1357 NPLFVNEITFADEDNIIKGGDHNRPLYIEGNIGSAHLRRILIDLGSAVNILPVRSLTRAG 1416
Query: 858 YRGTPLRRSTFLVKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWI 917
+ L ++ FD K LG I + I + +F V F V++ N SYS LLGRPWI
Sbjct: 1417 FTTKDLEPIDVVICGFDNQGKPTLGAITIKIQMSTFSFKVRFFVIEANTSYSALLGRPWI 1476
Query: 918 HDAGAVTSTLHQKLKFVKNGKLVTIHGEEAYLVSQLSSFSCVEAGSAE 965
H V STLHQ LKF+ +G + + S S ++ E+ A+
Sbjct: 1477 HKYRVVPSTLHQCLKFLDG------NGVQQRITSNFSPYTIQESYHAD 1518
>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
Length = 1027
Score = 762 bits (1968), Expect = 0.0
Identities = 418/1063 (39%), Positives = 617/1063 (57%), Gaps = 39/1063 (3%)
Query: 1178 MPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVA 1237
M G+ P I HR+ PVRQ++RR HPD I++E+ K ++AGF+ V YP+W+A
Sbjct: 1 MKGIHPSITSHRLNVVSTARPVRQRIRRFHPDRQRVIRNEIDKLLEAGFIREVSYPDWLA 60
Query: 1238 NIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 1297
N+V VPKK+GK R+CVD+ +LN A PKD+FPLP ID +VD+T+ + SF+D FSGY+QI
Sbjct: 61 NVVVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQGMLSFLDAFSGYHQI 120
Query: 1298 KMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIV 1357
MSP+D EK +FITP +CYKVMPFGL NAGATYQR MT +F +I VEVY+DD++V
Sbjct: 121 PMSPDDEEKIAFITPHDLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGHSVEVYIDDIVV 180
Query: 1358 KSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAI 1417
KS EQH+ +L ++F LR+Y ++LNP+KC FGV + K LGF+VSQ+GIEV PD+V+A+
Sbjct: 181 KSKTREQHILHLQEVFYLLRRYGMKLNPSKCAFGVSARKFLGFMVSQRGIEVSPDQVKAV 240
Query: 1418 REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIK 1477
E P P+ +K+++ G+L + RFI+ P F +RK W D CQ A + IK
Sbjct: 241 METPPPRNKKELQRLTGKLVALGRFIARFIDELRPFFLAIRKAGTHGWTDNCQNALERIK 300
Query: 1478 NYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRY 1537
+YL++PPIL P+ L MYLAV + ++ VL + + K++ IYY+S+ D ETRY
Sbjct: 301 HYLMQPPILSSPIPKEKLYMYLAVSEWAISAVL-FRCPSPKEQKPIYYVSRALADVETRY 359
Query: 1538 TMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDI 1597
+ +E AL AA++LR Y H ++ P++ I K +TG++ +W + LSE+ I
Sbjct: 360 SKMELISLALRSAAQKLRPYFQAHPV-IVLTDQPLRNILHKPDLTGRMLQWAIELSEFGI 418
Query: 1598 VFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKW 1657
F+ + ++KG ++AD ++E+ +P +EG W
Sbjct: 419 EFQPRLSMKGQVMADF----------VLEYS--------------RKPGQHEGSRKKEWW 454
Query: 1658 GLVFDGAVNAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 1717
L DGA + G G+G ++ SP G H+ R+ F +NN AEYEA + G++ A+ + +
Sbjct: 455 TLRVDGASRSSGSGVGLLLQSPTGEHLEQAIRLGFSASNNEAEYEAILSGLDLALALSVS 514
Query: 1718 HLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHHIPRDENQMADALA 1777
L I+ DS LV+ ++ E+E A++ Y R L FT+ + I R +N+ ADALA
Sbjct: 515 KLRIFSDSQLVVKHVQEEYEAKDARMARYLAKVRNTLQQFTEWTIEKIKRADNRRADALA 574
Query: 1778 TLSSMFRVNHWNDVPIIKGQRLERPSHVFAIGDVIDQAGENVVGYRPWYYDIKQFLLSRE 1837
+++ + +PI ++ V I + + W DI +++ +
Sbjct: 575 GIAASLSIKEAILLPI----HVQTNPSVSEI-SICSTTEAPQADDQEWMNDITEYIRTGT 629
Query: 1838 YPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLVHDVHDGTFGTH 1897
PG KQ K +R A RF L G LYKR++ LRC+ EA+ ++ ++H+G +G H
Sbjct: 630 L-PGDPKQAHK-VRVQAARFTLIGGHLYKRSFTGPYLRCLGHSEAQYVLAELHEGIYGNH 687
Query: 1898 ATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMW 1957
+ G +++ + GYYW M+ + Y ++C KCQ YA H+P L +S PWPF+ W
Sbjct: 688 SGGRSLAHRAHSQGYYWPTMKKEAAAYVKRCDKCQRYAPIPHMPSTTLKSISGPWPFAQW 747
Query: 1958 GIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSK 2017
G+D++ R P A +F+LVA DYF+KWVEA +Y + + V KF+ NIICR+G+P
Sbjct: 748 GMDIV-RPLPTAPAQKKFLLVATDYFSKWVEAEAYASTKDKDVTKFVWKNIICRFGIPQT 806
Query: 2018 IITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYK-D 2076
II DNG ++ + C E I + S+P PQ NG EA NK + ++K + K
Sbjct: 807 IIADNGPQFDSIAFRNFCSELNIRNSYSTPRYPQSNGQAEATNKTLITALKKRLEQAKGK 866
Query: 2077 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQS 2136
W E LP L YRTT TG TPF+L YGM+AV+P+E+ +P++ AK S+A
Sbjct: 867 WVEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVIPIEIGLPTIWT-NAAKQSDANMQLG 925
Query: 2137 RYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPREFKVGELVLKRRISQQPD-PRGK 2195
R L+ +E R A R YQ R A +++KV PR K G LVL++ + GK
Sbjct: 926 R--NLDWTDEVRESASIRMADYQQRASAHYNRKVRPRSLKNGTLVLRKFFENTTEVGAGK 983
Query: 2196 WTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2238
+ N+EGPY+V KA GA L +DG L P N +K+Y+
Sbjct: 984 FQANWEGPYIVSKASDNGAYHLQKLDGTPLLRPWNVSNLKQYY 1026
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 754 bits (1948), Expect = 0.0
Identities = 424/1113 (38%), Positives = 626/1113 (56%), Gaps = 41/1113 (3%)
Query: 1133 ELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPT 1192
E++NI + R + +GA + ++ ++I LL+ FAWS EDM G+DP I H +
Sbjct: 759 EMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNV 818
Query: 1193 KPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMC 1252
P PV+QK R+ P+ A + EV+K + AG ++ V+YPEW+AN V V KK+GK R+C
Sbjct: 819 DPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVC 878
Query: 1253 VDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP 1312
VD+ DLNKA PKD++PLPHID LV+ T+ + + SFMD FSGYNQI M +D+EKTSF+T
Sbjct: 879 VDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTD 938
Query: 1313 WGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKM 1372
GT+CYKVM FGL NAGATYQR + + D I + VEVY+DDM+VKS E HVE+L+K
Sbjct: 939 RGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKC 998
Query: 1373 FERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGF 1432
F+ L Y ++LNP KCTFGV SG+ LG++V+++GIE +P ++RAI E+P+P+ ++V+
Sbjct: 999 FDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRL 1058
Query: 1433 LGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEG 1492
GR+ ++RFIS T C P + LL++ W+ + +EAF+ +K+YL PPILV P G
Sbjct: 1059 TGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVG 1118
Query: 1493 RPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAK 1552
L +Y+AV D ++ VL ++D ++ I+Y SK + ETRY ++EK A+ +A+
Sbjct: 1119 ETLYLYIAVSDHAVSSVLVREDR--GEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSAR 1176
Query: 1553 RLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILAD 1612
+LR Y +HT +++ P++ + +G++ +W + LSEYDI F+ + A+K +LAD
Sbjct: 1177 KLRPYFQSHTIAVLTD-QPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLAD 1235
Query: 1613 HLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGM 1672
L PL + EE W L DG+ +A G G+
Sbjct: 1236 FLIELPLQSAERAVSGNRGEE-----------------------WSLYVDGSSSARGSGI 1272
Query: 1673 GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQI 1732
G +VSP + + R+ F TNN+AEYE I G+ A M+I + + DS L+ Q+
Sbjct: 1273 GIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQL 1332
Query: 1733 KGEWETHHAKLIPYHDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVP 1792
GE+E + K+ Y + + F +L IPR +N ADALA L+ + +P
Sbjct: 1333 SGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALALTSDSDLRRIIP 1392
Query: 1793 I--IKGQRLERPSHVFAIGDVIDQAGENVVGYRPWYYDIKQFLLSREYPPGASKQDKKTL 1850
+ I ++ V + + + W +I+ +L G DK T
Sbjct: 1393 VESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYL-----SDGTLPSDKWTA 1447
Query: 1851 RRL---AGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLVHDVHDGTFGTHATGHTMSRKL 1907
RRL A ++ L + L K + +L C+ E +++ + H+G G H+ G ++ KL
Sbjct: 1448 RRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRALALKL 1507
Query: 1908 LRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEP 1967
+ G+YW M DC + KC +CQ +A IH P L +P+PF W +D++G +
Sbjct: 1508 KKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVGPM-- 1565
Query: 1968 KASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLN 2027
AS RFILV DYFTKWVEA SY + V F+ IICR+G+P +IITDNG+
Sbjct: 1566 PASRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDNGSQFI 1625
Query: 2028 NNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKD-WHEMLPYALH 2086
+ + C +KI + S+P PQ NG EA NK I ++K + K W + L L
Sbjct: 1626 SLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAWADELDGVLW 1685
Query: 2087 GYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEE 2146
YRTT RS+T TPF+ YGMEA+ P EV SLR M K E + D+L+ +EE
Sbjct: 1686 SYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELN-DRMMLDRLDDLEE 1744
Query: 2147 KRMDAMARGHSYQARMKAAFDKKVNPREFKVGELVLKRRISQQPD-PRGKWTPNYEGPYV 2205
R A+ R +YQ +++KV+ R F VG+LVL++ + GK N+EG Y
Sbjct: 1745 IRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLGANWEGSYQ 1804
Query: 2206 VKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2238
V K G L M G +P N+ +K+Y+
Sbjct: 1805 VSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1837
Score = 76.6 bits (187), Expect = 9e-12
Identities = 51/180 (28%), Positives = 85/180 (46%), Gaps = 7/180 (3%)
Query: 807 FSEEELPEVGKSHNLALHISLNCKSDMISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRS 866
F++ +L + HN L + L ++ VL+DTGSS++++ K L ++ ++
Sbjct: 602 FTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPV 661
Query: 867 TFLVKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTST 926
+ + FDG +G I LPI +G V F V+ A Y+ +LG PWIH A+ ST
Sbjct: 662 SKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIPST 721
Query: 927 LHQKLKFVKNGKLVTIHG-------EEAYLVSQLSSFSCVEAGSAEGTAFQGLTIESAES 979
HQ +KF + + T+ +Y S+L V ++ T G+ E + S
Sbjct: 722 YHQCVKFPTHNGIFTLRAPKEAKTPSRSYEESELCRTEMVNIDESDPTRCVGVGAEISPS 781
Score = 44.3 bits (103), Expect = 0.049
Identities = 34/172 (19%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Query: 179 EFDKYNGLTCPQNHIVKY---VRKMGNYKDN-DSLMIHYFQDSLMEDAAEWYTSLSKDDV 234
+ + YNG P+ + + + + DN D+ F + L A W++ L + +
Sbjct: 220 KLESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIFIEHLTGPAHNWFSRLKPNSI 279
Query: 235 HTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEE 294
+F +L ++F HY + + L S+SQ +ES R + R++ IT +
Sbjct: 280 DSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFVDRFKLVVTNITVPDEAAI 339
Query: 295 MTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 346
+ + + + + AP+ + + +R E + +I+ K S+
Sbjct: 340 VALRNAVWYDSRFRDDITLHAPSTLEDALHRASRFIELEEEKLILARKHNST 391
>gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530550|ref|NP_919577.1| putative
retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18581535|gb|AAK52540.2| Putative
retroelement pol polyprotein [Oryza sativa]
Length = 1580
Score = 753 bits (1944), Expect = 0.0
Identities = 419/1105 (37%), Positives = 634/1105 (56%), Gaps = 66/1105 (5%)
Query: 1141 ENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVR 1200
++ EI I + +G + +I+LL+E+ D F W Y +MPG IVEHR+P KP P +
Sbjct: 528 DDLEEIDISPAIGQG-RHLLIELLKEFRDCFTWEYYEMPGHSRSIVEHRLPLKPGVRPHQ 586
Query: 1201 QKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNK 1260
Q RR DM +K+E+++ DAGF+ Y EWV++IVPV KK+GKVR+C+DFR LNK
Sbjct: 587 QLPRRCKADMLEPVKAEIKRLYDAGFIRPCRYAEWVSSIVPVIKKNGKVRVCIDFRYLNK 646
Query: 1261 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPW--GTFCY 1318
A+PKD +P+ D LVD + K+ SFMDG +GYNQI M+ ED KT+F P G F +
Sbjct: 647 ATPKDEYPMLVADQLVDAASGHKILSFMDGNAGYNQIFMAEEDIHKTTFRCPGAIGLFEW 706
Query: 1319 KVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRK 1378
V+ F L +AGATYQR M ++HD+I VEVY+DD++VKS + E H+ L K+FER RK
Sbjct: 707 VVITFVLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFERTRK 766
Query: 1379 YKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNY 1438
Y L++NP KC FGV +G+ LGF+V ++GIEV + AI+++ P+ + +++ +G++N+
Sbjct: 767 YGLKMNPTKCAFGVSAGQFLGFLVHERGIEVTQRSINAIKKIKPPEDKTELQEMIGKINF 826
Query: 1439 ISRFISHMTATCGPIFKLLR--KNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLI 1496
+ RFIS ++ P LLR +Q W E Q+A D+IK YL PP+L+PP +G P
Sbjct: 827 VRRFISILSGKLEPFTPLLRLKADQQFAWGAEQQKALDNIKEYLSSPPVLIPPQKGIPFR 886
Query: 1497 MYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRH 1556
+YL+ D+S+ VL Q+ E +KE ++YLS++ + ETRY+ +EK C L ++ RLRH
Sbjct: 887 LYLSAGDKSISSVLIQELE--RKERVVFYLSRRLLNAETRYSPVEKLCLCLYFSCTRLRH 944
Query: 1557 YLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAY 1616
YL+++ +I + D +KY+ + G+I +W L+E+D+ +++ KAIKG +A+ +
Sbjct: 945 YLLSNECTVICKADVVKYMLSAPILKGRIGKWIFSLTEFDLRYESPKAIKGQAIANFIV- 1003
Query: 1617 QPLDDYQLIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGMGAVI 1676
D+ D+ I G W L FDG+V +G G+G VI
Sbjct: 1004 -----------DYRDDSI---------------GSVEVVPWTLFFDGSVCTHGCGIGLVI 1037
Query: 1677 VSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEW 1736
+SP+G F I TNN AEYEA + G++ ++ ++I GDS LVI+Q+ GE+
Sbjct: 1038 ISPRGACFEFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADTIEIMGDSLLVISQLAGEY 1097
Query: 1737 ETHHAKLIPYHDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKG 1796
E + LI Y++ + L+ F V L H+ R++N A+ LA +S +++ +IK
Sbjct: 1098 ECKNDTLIVYNEKCQELMREFRLVTLKHVSREQNIEANDLAQGASGYKL-------MIKH 1150
Query: 1797 QRLERPSHVFAIGDVIDQAGENVVGYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR 1856
++E V+ W Y + Q+L S+ + LR A +
Sbjct: 1151 VQIE----------------VAVITADDWRYYVYQYL------QDPSQSASRKLRYKALK 1188
Query: 1857 FLLDGDILYKRNYDMVLLRCVDEHEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMA 1916
++L D LY R D VLL+C+ +A+ + +VH+G GTH + H M L AGY+W
Sbjct: 1189 YILLDDELYYRTIDGVLLKCLSTDQAKVAIGEVHEGICGTHQSAHKMKWLLRCAGYFWPT 1248
Query: 1917 MEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFI 1976
M DC++Y + C CQ + P A+N + PWPF WGIDMIG I P +S GH+FI
Sbjct: 1249 MLEDCFRYYKGCQDCQKFGAIQRAPASAMNPIIKPWPFRGWGIDMIGMINPPSSKGHKFI 1308
Query: 1977 LVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCE 2036
LVA DYFTKWVEA V +F++ +II R G+P I TD G+ ++ +
Sbjct: 1309 LVATDYFTKWVEAIPLKKVDSGDAIQFVQEHIIYRVGIPQTITTDQGSIFVSDEFIQFAD 1368
Query: 2037 EFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSS 2095
I+ NSSPY Q NG EA+NK++ +++++ ++ Y + WH L AL YR S
Sbjct: 1369 SMGIKLLNSSPYYAQANGQAEASNKSLIKLIKRKISDYPRQWHTRLAEALWSYRMACHGS 1428
Query: 2096 TGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARG 2155
P+ LVY +A+LP EV I S R ++ L+ E+ D+ + + R+ A+A+
Sbjct: 1429 IQVPPYKLVYRHKAILPWEVRIGSRRTELQNDLTADEYSNLMADEREDLVQSRLRALAKV 1488
Query: 2156 HSYQARMKAAFDKKVNPREFKVGELVLK--RRISQQPDPRGKWTPNYEGPYVVKKAFSGG 2213
+ R+ ++KKV P++F GEL+ K I + GKW+PN+EGP+ + K S G
Sbjct: 1489 IKDKERVTRHYNKKVVPKDFSEGELIWKLILPIGTRDSKFGKWSPNWEGPFQIHKVVSKG 1548
Query: 2214 ALILTHMDGVELPNPVNADIVKKYF 2238
A +L +DG +N +KKY+
Sbjct: 1549 AYMLQGLDGEVYDRALNGKYLKKYY 1573
Score = 77.0 bits (188), Expect = 7e-12
Identities = 50/179 (27%), Positives = 90/179 (49%), Gaps = 3/179 (1%)
Query: 811 ELPEVGKSHNLA-LHISLNCKSDMISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFL 869
E PE ++ +L L+I+ +S ++VD G+++N+MP T +L L ++ +
Sbjct: 351 EKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMV 410
Query: 870 VKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 929
+K F G+ +G +++ +T+G + TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 411 LKDFGGNPSETMGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTIHQ 470
Query: 930 KLKFVKNGKLVTIHGEEAYLVSQLSSFSCVEAGSAEGTAFQGLTIESAESKEAGAAMAS 988
L G + I ++ L + S+ C E + T++ + K+ M++
Sbjct: 471 CL-IQWQGDKIEIVPADSQLKMENPSY-CFEGVMEGSNVYTKDTVDDLDDKQGQGLMSA 527
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 696 bits (1797), Expect = 0.0
Identities = 394/1098 (35%), Positives = 616/1098 (55%), Gaps = 56/1098 (5%)
Query: 1146 IKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRR 1205
I IG LE+ ++++I+++++E +FAWS +++ G+D ++EH + K P +QKLRR
Sbjct: 956 ILIGENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRR 1015
Query: 1206 THPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKD 1265
D K E++K + A + V +PEW+AN V V K +GK RMC+DF DLNKA PKD
Sbjct: 1016 MSTDRQQAAKIELEKLLKAKVIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKD 1075
Query: 1266 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGL 1325
+FPLP ID LVD TA ++ SF+D +SGY+Q+ M ED EKTSFITP+GT+C+ MPFGL
Sbjct: 1076 DFPLPRIDQLVDATAGCELMSFLDAYSGYHQVFMVKEDEEKTSFITPFGTYCFIRMPFGL 1135
Query: 1326 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNP 1385
NAGAT+ R + + + + VE Y+DD++VKS H + L + FE LRK ++LNP
Sbjct: 1136 KNAGATFARLIGKVLAKQLGRNVEAYIDDIVVKSKQAFTHGKDLQETFENLRKCSVKLNP 1195
Query: 1386 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 1445
KC FGVR+GKLLGF+VS++GIE +PDK+ AI +M P+ ++V+ GR+ +SRF+S
Sbjct: 1196 EKCVFGVRAGKLLGFLVSKRGIEANPDKIAAIHQMEPPKNTREVQRLTGRMASLSRFLSK 1255
Query: 1446 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDES 1505
P FK LR W ECQ+AFD +K YL E P L P +G+PL+MY+A +
Sbjct: 1256 SAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLHEMPTLASPPKGQPLLMYVAATPAT 1315
Query: 1506 MGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWL 1565
+ VL Q++E ++ +Y++S+ +TRY+ +EK A+ A+++LRHY ++H +
Sbjct: 1316 VSAVLVQEEEN--RQVPVYFVSEALQGPKTRYSEVEKLIYAIVMASRKLRHYFLSHDITI 1373
Query: 1566 ISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQLI 1625
S PI + V G+IA+W M L +D+ + ++ AIK +LAD +A
Sbjct: 1374 PSAY-PIGEVLTNKEVAGRIAKWAMELLPFDLKYISRTAIKSQVLADFVAEWT------- 1425
Query: 1626 EFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGMGAVIVSPQGHHIP 1685
P+E + + + W + DGA NA G G AV+ +P +
Sbjct: 1426 ----PNE--------------VEQQEEVKKPWIVFSDGACNAAGAGAAAVVKTPMKQTLK 1467
Query: 1686 FTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIP 1745
++ +++F TNN AEYE + + +A + + L + DS LV +E +
Sbjct: 1468 YSVQLVFPSTNNTAEYEGVLLAMRKARALGARRLIVKTDSKLVAGHFSKSFEAKEETMAK 1527
Query: 1746 YHDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRV--NHWNDVPIIKGQRLERPS 1803
Y + AR +F + + I R+EN AD LA ++ + N + D+ + +PS
Sbjct: 1528 YLEEARLNEKHFLGITVKAITREENGEADELAKAAATGQPLENSFFDI-------ITQPS 1580
Query: 1804 HVFAIGDVIDQAGENVVGYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDI 1863
+ I + G+ W I ++L+S + P +++ K ++ ++ ++ +
Sbjct: 1581 YEKKEVACIQREGD-------WREPILKYLVSAQLPE--KEEEAKRIQLMSKKYKVVEGQ 1631
Query: 1864 LYKRNYDMVLLRCVDEHEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQ 1923
LYK LL+CV E ++V ++H+G G H +++ K++R G YW + D +
Sbjct: 1632 LYKSGVTAPLLKCVTREEGMKMVVEIHEGLCGAHQAPWSVASKVIRQGIYWPTIMKDTEK 1691
Query: 1924 YARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYF 1983
Y + C CQ + PP L + WPF WGID++G + P+A RF++VAI+YF
Sbjct: 1692 YIKTCKACQKFGPMTKAPPKELQPIPPVWPFYRWGIDIVGPL-PRAKGDLRFVIVAIEYF 1750
Query: 1984 TKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHH 2043
++W+EA + +T V KF+ NIICR+G+P +I+ DNG + Q +C+ ++ +
Sbjct: 1751 SRWIEAEAVARITSAAVQKFVWKNIICRFGIPKEIVCDNGKQFESGKFQDMCKGLNLQIN 1810
Query: 2044 NSSPYRPQMNGAVEAANKNIKRIVQKMV--TTYKDWHEMLPYALHGYRTTVRSSTGATPF 2101
+S PQ NG VE AN I ++K + + W E L L RTTV STG TPF
Sbjct: 1811 FASVGHPQTNGVVERANGKIMEAIKKRLEGSAKGKWPEDLLSVLWALRTTVVRSTGMTPF 1870
Query: 2102 SLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQAR 2161
LVYG EA+ P EV S R+I + K E R L +++E R++A+ + SY
Sbjct: 1871 RLVYGDEAMTPSEVGAHSPRMIFDQKDEE-----GREITLEMLDEIRVEALEKMASYTEG 1925
Query: 2162 MKAAFDKKVNPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMD 2221
K+ +++KV R + G+LVLK+ +++ GK +EGP++VKK GA L ++D
Sbjct: 1926 TKSYYNQKVKTRPIEEGDLVLKKVLNEV--AVGKLESKWEGPFIVKKKTETGAFKLAYLD 1983
Query: 2222 GVELPNPVNADIVKKYFA 2239
G EL + NA +KK++A
Sbjct: 1984 GEELKHTWNAVSLKKFYA 2001
Score = 44.3 bits (103), Expect = 0.049
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Query: 807 FSEEELPEVGKSHNLALHISLNCKSDMISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRS 866
F E+ + H L +S+ + VL+D GSS +V+ ++ L +
Sbjct: 760 FGPEDAEGILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNA 819
Query: 867 TFLVKAFDGSRKNVLGEIDLPITIGPENFL----VTFQVMDINASYSCLLGRPWIHDAGA 922
++ F G + + +G+I L + G + + F V+D+ Y+ +LGR I+ A
Sbjct: 820 GVPLQGFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGRSTINIFEA 879
Query: 923 VTSTLHQKLKFVKNGKLVTIHGEE 946
+ + +K ++T+ GE+
Sbjct: 880 IIHHNYICMKLPGLRGVITVRGEQ 903
>ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultivar-group)]
gi|38347562|emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa
(japonica cultivar-group)]
Length = 1986
Score = 695 bits (1793), Expect = 0.0
Identities = 408/1142 (35%), Positives = 612/1142 (52%), Gaps = 59/1142 (5%)
Query: 1111 PYEITRLLEQEKKAIQPHQEEIELINIGTEENKRE-IKIGATLEEGVKQKIIQLLREYPD 1169
P + L K+A+ +E ++ + RE I++ AT E +I L+ D
Sbjct: 891 PRGVLSLRSDIKQAVTCDKESCDMAQTREMASAREEIRLAATTESA----LITFLQNNKD 946
Query: 1170 IFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMT 1229
IFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 947 IFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKE 1006
Query: 1230 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 1289
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D
Sbjct: 1007 VLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLD 1066
Query: 1290 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 1349
+SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE
Sbjct: 1067 CYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVE 1126
Query: 1350 VYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 1409
YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1127 AYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQA 1186
Query: 1410 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDEC 1469
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1187 NPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEA 1246
Query: 1470 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYY 1525
Q+AF+ K L +PP+L P PL++Y++ + + VL +++E G K + IY+
Sbjct: 1247 QKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYF 1306
Query: 1526 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1585
+S+ D +TRY ++K + ++L HY H+ +++ P+ + G+I
Sbjct: 1307 VSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRI 1365
Query: 1586 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEEP 1645
A+W + L DI FK + +IK LAD +A ++ + D P E+I +
Sbjct: 1366 AKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--------- 1411
Query: 1646 LINEGPDPNSKWGLVFDGAVNAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 1705
W + FDG+ G G G V++SP G + + I F ++N+AEYEA +
Sbjct: 1412 -----------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1460
Query: 1706 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHHI 1765
G+ AI + IK L + GDS LV+NQ+ EW ++ Y R+L F +EL H+
Sbjct: 1461 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1520
Query: 1766 PRDENQMADALATLSSMFRVNHWNDVPIIKGQRLERPSHVFAIGDVIDQAGENVVGYRPW 1825
R N+ AD LA S R +DV + + L P+ + V+ W
Sbjct: 1521 LRHNNEAADRLANFGSK-REAAPSDVFV---EHLYTPTVPHKDTTQDADTHDVVMVEADW 1576
Query: 1826 YYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEA 1882
+FL S+E P QDK R++ R +++ LYK++ +L RCV E
Sbjct: 1577 REPFIRFLSSQELP-----QDKDEAERISRRSKLYVMHESELYKKSPSGILQRCVSLEEG 1631
Query: 1883 EQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPP 1942
QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+P
Sbjct: 1632 RQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPA 1691
Query: 1943 HALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 2002
L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1692 QELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARD 1750
Query: 2003 FIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKN 2062
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN
Sbjct: 1751 FF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGM 1809
Query: 2063 I-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 2117
I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1810 ILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEF 1869
Query: 2118 PSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPREFKV 2177
SLR E + + R D L+ +EE R A+ + Y ++ ++ V R F V
Sbjct: 1870 ESLRF---RNFREERYEEDRVDDLHRLEEAREAALIQSARYLQGLRRYHNRNVRSRAFLV 1926
Query: 2178 GELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKY 2237
G+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + ++++
Sbjct: 1927 GDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRF 1984
Query: 2238 FA 2239
+A
Sbjct: 1985 YA 1986
Score = 54.7 bits (130), Expect = 4e-05
Identities = 61/264 (23%), Positives = 113/264 (42%), Gaps = 33/264 (12%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 416 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 472
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 473 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 531
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
REY +R+ +I+ + ++ + F K ++ + + P T+ E+A
Sbjct: 532 REYIRRFSEQRNKISD-ISDDVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 585
Query: 333 VRDGIIVFEKAESSVNASKRY---------------GNGHHKKKETEVGMVSAGAGQSMA 377
+ KAE +V ASK+ G+ +HK ++ + + A A S
Sbjct: 586 NE-----YAKAEDAVTASKQSGPSWKPKNTPATGGGGSNNHKDRKRKPEELVATAAHSSR 640
Query: 378 TVAPINATQ--MPPSYPYMPYSQH 399
+ +N M P+ P S H
Sbjct: 641 QRSRVNTFDKIMNSQCPHHPNSNH 664
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 834 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 892
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 784 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 843
Query: 893 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 932
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 844 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 887
>ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46391119|gb|AAS90646.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1991
Score = 693 bits (1788), Expect = 0.0
Identities = 403/1139 (35%), Positives = 611/1139 (53%), Gaps = 53/1139 (4%)
Query: 1111 PYEITRLLEQEKKAIQPHQEEIELINIGTEENKRE-IKIGATLEEGVKQKIIQLLREYPD 1169
P + L K+A+ +E ++ + RE I++ AT E +I L+ D
Sbjct: 896 PRGVLTLRSDIKQAVTCDKESCDMAQTREMASAREEIRLAATTESA----LITFLQNNKD 951
Query: 1170 IFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMT 1229
IFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 952 IFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKE 1011
Query: 1230 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 1289
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D
Sbjct: 1012 VLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLD 1071
Query: 1290 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 1349
+SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE
Sbjct: 1072 CYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVE 1131
Query: 1350 VYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 1409
YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1132 AYVDDVVVKTKQKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQA 1191
Query: 1410 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDEC 1469
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1192 NPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEA 1251
Query: 1470 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYY 1525
Q+AF+ K L +PP+L P PL++Y++ + + VL +++E G K + IY+
Sbjct: 1252 QKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYF 1311
Query: 1526 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1585
+S+ D +TRY ++K + ++L HY H+ +++ P+ + G+I
Sbjct: 1312 VSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRI 1370
Query: 1586 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEEP 1645
A+W + L DI FK + +IK LAD +A ++ + D P E+I +
Sbjct: 1371 AKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--------- 1416
Query: 1646 LINEGPDPNSKWGLVFDGAVNAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 1705
W + FDG+ G G G V++SP G + + I F ++N+AEYEA +
Sbjct: 1417 -----------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1465
Query: 1706 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHHI 1765
G+ AI + IK L + GDS LV+NQ+ EW ++ Y R+L F +EL H+
Sbjct: 1466 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1525
Query: 1766 PRDENQMADALATLSSMFRVNHWNDVPIIKGQRLERPSHVFAIGDVIDQAGENVVGYRPW 1825
R N+ AD LA S R +DV + + L P+ + + + W
Sbjct: 1526 LRHNNEAADRLANFGSK-REAAPSDVFV---EHLYSPTVPHKDATQVADTHDIAMVEADW 1581
Query: 1826 YYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQL 1885
+ +FL S+E P K + + + R + +++ LYK++ +L RCV E QL
Sbjct: 1582 REPLIRFLTSQELP--QYKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQL 1639
Query: 1886 VHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHAL 1945
+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+P L
Sbjct: 1640 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1699
Query: 1946 NVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIK 2005
+ WPF++WG+DM+G + KA G+ + +AID F+KW+EA +T F
Sbjct: 1700 QTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFMAIDKFSKWIEAKPVVTITADNARDFF- 1757
Query: 2006 NNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-- 2063
NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN I
Sbjct: 1758 INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQ 1817
Query: 2064 ---KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2120
R+ ++ W LP L RTT +TG +PF LVYG EA+LP EVE SL
Sbjct: 1818 RIKARVFDRLKPYAGKWVSQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESL 1877
Query: 2121 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPREFKVGEL 2180
R E + + R D L+ +EE R A+ + Y ++ ++ V R F VG+L
Sbjct: 1878 RF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDL 1934
Query: 2181 VLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2239
VL++ Q R K +P +EGP+++ + G+ L DG + N N + +++++A
Sbjct: 1935 VLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHIRRFYA 1991
Score = 54.7 bits (130), Expect = 4e-05
Identities = 62/264 (23%), Positives = 112/264 (41%), Gaps = 33/264 (12%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 421 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 477
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 478 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 536
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
REY +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 537 REYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 590
Query: 333 VRDGIIVFEKAESSVNASKRY---------------GNGHHKKKETEVGMVSAGAGQSMA 377
+ KAE +V ASK+ G+ +HK ++ + + A A S
Sbjct: 591 NE-----YAKAEDAVTASKQSGPSWKPKNTPATGGGGSNNHKDRKRKPEELVATAAHSSR 645
Query: 378 TVAPINATQ--MPPSYPYMPYSQH 399
+ +N M P+ P S H
Sbjct: 646 QRSRVNTFDKIMNSQCPHHPNSNH 669
Score = 49.3 bits (116), Expect = 0.002
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 834 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 892
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKSSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 893 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTIHGE 945
ENF ++F+V D +Y +LGRP + AV + +K ++T+ +
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLTLRSD 905
>gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531824|ref|NP_920214.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128685|gb|AAM92798.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1986
Score = 692 bits (1787), Expect = 0.0
Identities = 409/1144 (35%), Positives = 611/1144 (52%), Gaps = 63/1144 (5%)
Query: 1111 PYEITRLLEQEKKAIQPHQEEIELINIGTEENKRE-IKIGATLEEGVKQKIIQLLREYPD 1169
P + L K+A+ +E ++ + RE I++ AT E +I L+ D
Sbjct: 891 PRGVLTLRSDIKQAVTCDKESCDMAQTREIASAREEIRLAATTESA----LITFLQNNKD 946
Query: 1170 IFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMT 1229
IFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 947 IFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKE 1006
Query: 1230 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 1289
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D
Sbjct: 1007 VLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLD 1066
Query: 1290 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 1349
+SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE
Sbjct: 1067 CYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVE 1126
Query: 1350 VYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 1409
YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1127 AYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQA 1186
Query: 1410 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDEC 1469
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1187 NPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEA 1246
Query: 1470 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYY 1525
Q+AF+ K L +PP+L P PL++Y++ + + VL +++E G K + IY+
Sbjct: 1247 QKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYF 1306
Query: 1526 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1585
+S+ D + RY ++K + ++L HY H+ +++ P+ + G+I
Sbjct: 1307 VSEVLADSKARYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRI 1365
Query: 1586 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEEP 1645
A+W + L DI FK + +IK LAD +A ++ + D P E+I +
Sbjct: 1366 AKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--------- 1411
Query: 1646 LINEGPDPNSKWGLVFDGAVNAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 1705
W + FDG+ G G G V++SP G + + I F ++N+AEYEA +
Sbjct: 1412 -----------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1460
Query: 1706 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHHI 1765
G+ AI + IK L + GDS LV+NQ+ EW ++ Y R+L F +EL H+
Sbjct: 1461 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1520
Query: 1766 PRDENQMADALATLSSMFRVNHWNDVPIIKGQRLERPSHVFAIGDVIDQAGENVVGY--R 1823
R N+ AD LA S R +DV + + L P+ D A +
Sbjct: 1521 LRHNNEAADRLANFGSK-RETAPSDVFV---EHLYTPT--VPHKDTTQDADTRNIAMVEA 1574
Query: 1824 PWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEH 1880
W +FL S+E P QDK R++ R ++L LYK++ +L RCV
Sbjct: 1575 DWREPFIRFLTSQELP-----QDKDEAERISRRSKLYVLHESELYKKSPSGILQRCVSLE 1629
Query: 1881 EAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHV 1940
E QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+
Sbjct: 1630 EGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHL 1689
Query: 1941 PPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVV 2000
P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1690 PAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNA 1748
Query: 2001 AKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAAN 2060
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN
Sbjct: 1749 RDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERAN 1807
Query: 2061 KNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 2115
I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EV
Sbjct: 1808 GMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEV 1867
Query: 2116 EIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPREF 2175
E SLR E + + R D L+ +EE R A+ + Y ++ ++ V R F
Sbjct: 1868 EFESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAF 1924
Query: 2176 KVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVK 2235
VG+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + ++
Sbjct: 1925 LVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLR 1982
Query: 2236 KYFA 2239
+++A
Sbjct: 1983 RFYA 1986
Score = 53.5 bits (127), Expect = 8e-05
Identities = 61/264 (23%), Positives = 112/264 (42%), Gaps = 33/264 (12%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 416 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 472
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 473 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 531
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 532 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 585
Query: 333 VRDGIIVFEKAESSVNASKRY---------------GNGHHKKKETEVGMVSAGAGQSMA 377
+ KAE +V ASK+ G+ +HK ++ + + A A S
Sbjct: 586 NE-----YAKAEDAVTASKQSGPSWKPKNTPATGGGGSNNHKDRKRKPEELVATAAHSSR 640
Query: 378 TVAPINATQ--MPPSYPYMPYSQH 399
+ +N M P+ P S H
Sbjct: 641 QRSRVNTFDKIMNSQCPHHPNSNH 664
Score = 47.4 bits (111), Expect = 0.006
Identities = 33/117 (28%), Positives = 55/117 (46%), Gaps = 5/117 (4%)
Query: 834 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTF-LVKAFDGSRKNVLGEIDLPITIGP 892
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 784 LRRTLIDGGSALNILFAKTLDDMQIPRSELKSSNAPFHGVIPGLSATPLGQITLPVTFGT 843
Query: 893 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTIHGE 945
ENF ++F+V D +Y +LG P + AV + +K ++T+ +
Sbjct: 844 RENFRTENISFEVADFETAYHAILGHPALAKFMAVPHYTYMMMKMPGPRGVLTLRSD 900
>ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultivar-group)]
gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa
(japonica cultivar-group)]
Length = 2013
Score = 690 bits (1780), Expect = 0.0
Identities = 406/1112 (36%), Positives = 598/1112 (53%), Gaps = 61/1112 (5%)
Query: 1147 KIGATLEEGVKQKIIQLLREYP-------DIFAWSYEDMPGLDPMIVEHRIPTKPECPPV 1199
KI + E K K I L P DIFAW DMPG+ ++EH + K + P+
Sbjct: 944 KISKSGESEAKTKKIPLDPSDPTKTANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPI 1003
Query: 1200 RQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLN 1259
+Q+LRR D IK E+ K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DLN
Sbjct: 1004 KQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLN 1063
Query: 1260 KASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYK 1319
K+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI++ D KTSFITP+G +CY
Sbjct: 1064 KSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYV 1123
Query: 1320 VMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKY 1379
MPFGL NAGATYQR + F I + VE YVDD++VK+ ++ + L + F +R +
Sbjct: 1124 TMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAF 1183
Query: 1380 KLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYI 1439
+++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K V+ G + +
Sbjct: 1184 RMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAAL 1243
Query: 1440 SRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYL 1499
SRF+S + P FKLL+K W E Q+AF+ K L EPP+L P PL++Y+
Sbjct: 1244 SRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYV 1303
Query: 1500 AVFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLR 1555
+ + + VL +++E G K + IY++S+ D +TRY ++K + ++L
Sbjct: 1304 SATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLS 1363
Query: 1556 HYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1615
HY H+ +++ P+ I V G+IA+W + L DI FK + +IK LAD +A
Sbjct: 1364 HYFQGHSVTVVTSF-PLGDILHNREVNGRIAKWALELMSLDISFKPRISIKSQALADFVA 1422
Query: 1616 YQPLDDYQLIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGMGAV 1675
++ + D P E + + W + FDG+ G G G V
Sbjct: 1423 -----EWTECQEDTPAENMEH--------------------WTMHFDGSKRLSGTGAGVV 1457
Query: 1676 IVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGE 1735
++SP G + + I F ++N+AEYEA + G+ AI + IK L + GDS LV+NQ+ E
Sbjct: 1458 LISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKE 1517
Query: 1736 WETHHAKLIPYHDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIK 1795
W ++ Y R+L F +EL H+ R N+ AD LA S R +DV +
Sbjct: 1518 WSYLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSK-REAAPSDVFV-- 1574
Query: 1796 GQRLERPSHVFAIGDVIDQAGENVVGYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAG 1855
+ L P+ + + + W + +FL S+E P QDK R++
Sbjct: 1575 -EHLYTPTVPHKDTTQVAGTHDAAMVEVDWREPLIRFLTSQELP-----QDKDEAERISR 1628
Query: 1856 R---FLLDGDILYKRNYDMVLLRCVDEHEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGY 1912
R ++L LYK++ +L RCV E QL+ D+H G G HA T+ K R G+
Sbjct: 1629 RSKLYVLHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGF 1688
Query: 1913 YWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNG 1972
+W D + R C CQ +A +IH+P L + WPF++WG+DM+G + KA G
Sbjct: 1689 FWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGG 1747
Query: 1973 HRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQ 2032
+ + VAID F+KW+EA +T F NI+ R+GVP++IITDNGT V +
Sbjct: 1748 YTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFK 1806
Query: 2033 ALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALHG 2087
CE+F I+ +S P NG VE AN I R+ ++ W + LP L
Sbjct: 1807 DFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWS 1866
Query: 2088 YRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEK 2147
RTT +TG +PF LVYG EA+LP EVE SLR E + + R D L+ +EE
Sbjct: 1867 LRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEV 1923
Query: 2148 RMDAMARGHSYQARMKAAFDKKVNPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVK 2207
R A+ R Y ++ ++ V R F VG+LVL++ Q R K +P +EGP+++
Sbjct: 1924 REAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIIS 1981
Query: 2208 KAFSGGALILTHMDGVELPNPVNADIVKKYFA 2239
+ G+ L DG + N N + +++++A
Sbjct: 1982 EVTRPGSYRLKREDGTLVDNSWNIEHLRRFYA 2013
Score = 53.9 bits (128), Expect = 6e-05
Identities = 61/265 (23%), Positives = 112/265 (42%), Gaps = 34/265 (12%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 416 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 472
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 473 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 531
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 532 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 585
Query: 333 VRDGIIVFEKAESSVNASKRY----------------GNGHHKKKETEVGMVSAGAGQSM 376
+ KAE +V ASK+ G+ +HK ++ + + A A S
Sbjct: 586 NE-----YAKAEDAVTASKQSGPSWKQNKGTPATGGGGSNNHKDRKRKPAELVATASHSS 640
Query: 377 ATVAPINATQ--MPPSYPYMPYSQH 399
+ +N M P+ P S H
Sbjct: 641 RQRSRVNTFDKIMNSQCPHHPNSNH 665
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 834 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 892
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 785 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 844
Query: 893 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 932
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 845 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 888
>ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultivar-group)]
gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza
sativa (japonica cultivar-group)]
Length = 2010
Score = 690 bits (1780), Expect = 0.0
Identities = 411/1133 (36%), Positives = 606/1133 (53%), Gaps = 66/1133 (5%)
Query: 1129 QEEIELINIGTEENKREI-KIGATLEEGVKQKIIQLLREYP-------DIFAWSYEDMPG 1180
+E+I L E + KI + E K K I L P DIFAW DMPG
Sbjct: 922 REDIRLAAATASEGEEPATKISKSGESEAKTKKIPLDPSDPAKTANNKDIFAWKPSDMPG 981
Query: 1181 LDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIV 1240
+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +P+W+AN V
Sbjct: 982 IPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPV 1041
Query: 1241 PVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMS 1300
V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI++
Sbjct: 1042 LVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGRELLSFLDCYSGYHQIRLK 1101
Query: 1301 PEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSA 1360
D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE YVDD++VK+
Sbjct: 1102 ESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTK 1161
Query: 1361 DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREM 1420
++ + L + F +R ++++LNP KCTFGV SGKL+GF+VS +GI+ +P+KV AI M
Sbjct: 1162 QKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLVGFMVSHRGIQANPEKVTAILNM 1221
Query: 1421 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYL 1480
P T+K V+ G + +SRF+S + P FKLL+K W E Q+AF+ K L
Sbjct: 1222 KPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLL 1281
Query: 1481 LEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETR 1536
EPP+L P PL++Y++ + + VL +++E G K + IY++S+ D +TR
Sbjct: 1282 TEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTR 1341
Query: 1537 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1596
Y ++K + ++L HY H+ +++ P+ I G+IA+W + L D
Sbjct: 1342 YPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLD 1400
Query: 1597 IVFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSK 1656
I FK + +IK LAD +A ++ + D P E + +
Sbjct: 1401 ISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------------------- 1435
Query: 1657 WGLVFDGAVNAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 1716
W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+ AI + I
Sbjct: 1436 WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGI 1495
Query: 1717 KHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHHIPRDENQMADAL 1776
K L + GDS LV+NQ+ EW ++ Y R+L F +EL H+ R N+ AD L
Sbjct: 1496 KRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRL 1555
Query: 1777 ATLSSMFRVNHWNDVPIIKGQRLERPSHVFAIGDVIDQAGENVVGY--RPWYYDIKQFLL 1834
A S V +DV + + L P+ D AG + V W + +FL
Sbjct: 1556 ANFGSKREVAP-SDVFV---EHLYTPT--VPHKDTTQVAGTHDVAMVETDWREPLIRFLT 1609
Query: 1835 SREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLVHDVHD 1891
S+E P QDK R++ R +++ LYK++ +L RCV E QL+ D+H
Sbjct: 1610 SQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLQDIHS 1664
Query: 1892 GTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSP 1951
G G HA T+ K R G++W D + R C CQ +A +IH+P L +
Sbjct: 1665 GICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLS 1724
Query: 1952 WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICR 2011
WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F NI+ R
Sbjct: 1725 WPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHR 1782
Query: 2012 YGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRI 2066
+GVP++IITDNGT V + CE+F I+ +S P NG VE AN I R+
Sbjct: 1783 FGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1842
Query: 2067 VQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEA 2126
++ W + LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 1843 FDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---R 1899
Query: 2127 KLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPREFKVGELVLKRRI 2186
E + + R D L+ +EE R A+ R Y ++ ++ V R F VG+LVL++
Sbjct: 1900 NFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRK-- 1957
Query: 2187 SQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2239
Q R K +P +EGP+++ + G+ L DG + N N + +++++A
Sbjct: 1958 IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFYA 2010
Score = 53.5 bits (127), Expect = 8e-05
Identities = 52/211 (24%), Positives = 96/211 (44%), Gaps = 16/211 (7%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 413 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 469
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 470 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 528
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P +T+ E+A
Sbjct: 529 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKP-----PMTVKLMFEKA 582
Query: 333 VRDGIIVFEKAESSVNASKRYGNGHHKKKET 363
+ KAE +V ASK+ G + K T
Sbjct: 583 NE-----YAKAEDAVTASKQSGPSWKQNKGT 608
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 834 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 892
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 782 LRRTLIDGGSALNILFAKTLDDMQIPHSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 841
Query: 893 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 932
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 842 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 885
>ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2012
Score = 689 bits (1777), Expect = 0.0
Identities = 400/1094 (36%), Positives = 587/1094 (53%), Gaps = 76/1094 (6%)
Query: 1169 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 1228
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 972 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1031
Query: 1229 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1288
V +P+W+AN V V KK G+ MCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 1032 EVLHPDWLANPVLVRKKTGQWLMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1091
Query: 1289 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1348
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1092 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1151
Query: 1349 EVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1408
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1152 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1211
Query: 1409 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 1468
+P+KV AI M +P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1212 ANPEKVTAILNMKSPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDSFRWGPE 1271
Query: 1469 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1524
Q+AF+ K L EPP+L P PL++Y++ + + VL +++E G K + IY
Sbjct: 1272 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1331
Query: 1525 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1584
++S+ D +TRY ++K + ++L HY H+ +++ P+ I G+
Sbjct: 1332 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1390
Query: 1585 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEE 1644
IA+W + L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1391 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1437
Query: 1645 PLINEGPDPNSKWGLVFDGAVNAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1704
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1438 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1485
Query: 1705 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHH 1764
+ G+ AI + IK L + GDS LV+NQ+ EW ++ Y R+L F +EL H
Sbjct: 1486 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1545
Query: 1765 IPRDENQMADALATLSSMFRVNHWNDVPIIKGQRLERPSHVFA---------IGDVIDQA 1815
+ R N+ AD LA S +R PS VF D A
Sbjct: 1546 VLRHNNEAADRLANFGS---------------KREAAPSDVFVEHLYSPTVPHKDATQAA 1590
Query: 1816 GENVVGY--RPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYD 1870
G + V W + +FL S+E P QDK R++ R ++L LYK++
Sbjct: 1591 GAHDVAMVEADWREPLIRFLTSQELP-----QDKDEAERISRRSKLYVLHEAELYKKSPS 1645
Query: 1871 MVLLRCVDEHEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHK 1930
+L RCV E QL+ D+H G G HA T+ K R G++W D + R C
Sbjct: 1646 GILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEG 1705
Query: 1931 CQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAA 1990
CQ +A +IH+P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA
Sbjct: 1706 CQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAK 1764
Query: 1991 SYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRP 2050
+T F NI+ R+GVP++IITDNGT V + CE+F I+ +S P
Sbjct: 1765 PVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHP 1823
Query: 2051 QMNGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVY 2105
NG VE AN I R+ ++ W + LP L RTT +TG +PF LVY
Sbjct: 1824 MSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTSSRATGQSPFFLVY 1883
Query: 2106 GMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAA 2165
G EA+LP EVE SLR E + + R D L+ +EE R A+ R Y ++
Sbjct: 1884 GAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRY 1940
Query: 2166 FDKKVNPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVEL 2225
++ V R F VG+LVL++ Q R K +P +EGP+++ + G+ L DG +
Sbjct: 1941 HNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLV 1998
Query: 2226 PNPVNADIVKKYFA 2239
N N + +++++A
Sbjct: 1999 DNSWNIEHLRRFYA 2012
Score = 53.9 bits (128), Expect = 6e-05
Identities = 61/265 (23%), Positives = 112/265 (42%), Gaps = 34/265 (12%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 415 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 471
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 472 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 530
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 531 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 584
Query: 333 VRDGIIVFEKAESSVNASKRY----------------GNGHHKKKETEVGMVSAGAGQSM 376
+ KAE +V ASK+ G+ +HK ++ + + A A S
Sbjct: 585 NE-----YAKAEDAVTASKQSGPSWKQNKGTPATGGGGSNNHKDRKRKPAELVATASHSS 639
Query: 377 ATVAPINATQ--MPPSYPYMPYSQH 399
+ +N M P+ P S H
Sbjct: 640 RQRSRVNTFDKIMNSQCPHHPNSNH 664
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 834 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 892
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 784 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 843
Query: 893 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 932
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 844 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 887
>ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18071370|gb|AAL58229.1|
putative gag-pol precursor [Oryza sativa]
Length = 2026
Score = 687 bits (1774), Expect = 0.0
Identities = 399/1085 (36%), Positives = 589/1085 (53%), Gaps = 58/1085 (5%)
Query: 1169 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 1228
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 1229 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1288
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 1037 EVHHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 1289 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1348
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 1349 EVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1408
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 1409 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 1468
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1276
Query: 1469 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1524
Q+AF+ K L EPP+L P PL++Y++ + + VL +++E G K + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1336
Query: 1525 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1584
++S+ D +TRY ++K + ++L HY H+ +++ P+ I G+
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1395
Query: 1585 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEE 1644
IA+W + L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1442
Query: 1645 PLINEGPDPNSKWGLVFDGAVNAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1704
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 1705 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHH 1764
+ G+ AI + IK L + GDS LV+NQ+ EW ++ Y R+L F +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550
Query: 1765 IPRDENQMADALATLSSMFRVNHWNDVPIIKGQRLERPSHVFAIGDVIDQAGENVVGY-- 1822
+ R N+ AD LA S V +DV + + L P+ D AG + V
Sbjct: 1551 VLRHNNEAADRLANFGSKREVAP-SDVFV---EHLYTPT--VPHKDTTQVAGTHDVAMVE 1604
Query: 1823 RPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDE 1879
W + +FL S+E P QDK R++ R +++ LYK++ +L RCV
Sbjct: 1605 ADWREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSL 1659
Query: 1880 HEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIH 1939
E QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH
Sbjct: 1660 EEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIH 1719
Query: 1940 VPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 1999
+P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1720 LPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADN 1778
Query: 2000 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 2059
F NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE A
Sbjct: 1779 APDFF-INIVHRFGVPNRIITDNGRQFTGGVFKDCCEDFGIKICYASVAHPMSNGQVERA 1837
Query: 2060 NKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2114
N I R+ ++ W E LP L RTT +TG +PF LVYG EA+LP E
Sbjct: 1838 NGMILQGIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSE 1897
Query: 2115 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPRE 2174
VE SLR E + + R D L+ +EE R A+ + Y ++ ++ V R
Sbjct: 1898 VEFESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRA 1954
Query: 2175 FKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIV 2234
F VG+LVL++ Q R K +P +EGP+++ G+ L DG + N N + +
Sbjct: 1955 FLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISAVTRPGSYRLKREDGTLVDNSWNIEHL 2012
Query: 2235 KKYFA 2239
++++A
Sbjct: 2013 RRFYA 2017
Score = 56.6 bits (135), Expect = 9e-06
Identities = 54/211 (25%), Positives = 95/211 (44%), Gaps = 16/211 (7%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + + M +Y
Sbjct: 420 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANY 476
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P +F L ++ QK ES
Sbjct: 477 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQFDLYNVVQKSGESL 535
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 536 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 589
Query: 333 VRDGIIVFEKAESSVNASKRYGNGHHKKKET 363
+ KAE +V ASK+ G KK+T
Sbjct: 590 NE-----YAKAEDAVTASKQSGPSWKPKKDT 615
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 834 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 892
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 893 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 932
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 892
>gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533012|ref|NP_920808.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881590|gb|AAM00991.1| Putative retroelement [Oryza
sativa]
Length = 2017
Score = 687 bits (1772), Expect = 0.0
Identities = 399/1085 (36%), Positives = 588/1085 (53%), Gaps = 58/1085 (5%)
Query: 1169 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 1228
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 1229 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1288
V +P+W+AN V V KK G+ RMCVD+ DLNK PKD F LP ID +VD+TA ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 1289 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1348
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 1349 EVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1408
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 1409 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 1468
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFHWGPE 1276
Query: 1469 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1524
Q+AF+ K L EPP+L P PL++Y++ + + VL +++E G K + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEDGHVQKVQRPIY 1336
Query: 1525 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1584
++S+ D +TRY ++K + ++L HY H +++ P+ I G+
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHLVTVVTSF-PLGDILHNREANGR 1395
Query: 1585 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEE 1644
IA+W + L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKVEH-------- 1442
Query: 1645 PLINEGPDPNSKWGLVFDGAVNAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1704
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 1705 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHH 1764
+ G+ AI + IK L + GDS LV+NQ+ EW ++ Y R+L F +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550
Query: 1765 IPRDENQMADALATLSSMFRVNHWNDVPIIKGQRLERPSHVFAIGDVIDQAGENVVGY-- 1822
+ R N+ AD LA S V +DV + + L P+ D AG + V
Sbjct: 1551 VLRHNNKAADRLANFGSKREVAP-SDVFV---EHLYAPT--VPHKDTTQVAGTHDVAMVE 1604
Query: 1823 RPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDE 1879
W + +FL S+E P QDK R++ R +++ LYK++ +L RCV
Sbjct: 1605 ADWREPLIRFLTSQELP-----QDKDEAERISRRSRLYVMHEAELYKKSPSGILQRCVSL 1659
Query: 1880 HEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIH 1939
E QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH
Sbjct: 1660 EEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIH 1719
Query: 1940 VPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 1999
+P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1720 LPAQELQTIPLSWPFAVWGLDMVGPFK-KAFGGYTHLFVAIDKFSKWIEAKPVVTITADN 1778
Query: 2000 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 2059
F NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE A
Sbjct: 1779 ARDFF-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERA 1837
Query: 2060 NKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2114
N I R+ ++ W E LP L RTT +TG +PF LVYG EA+LP E
Sbjct: 1838 NGMILQGIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSE 1897
Query: 2115 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPRE 2174
VE SLR E + + R D L+ +EE R A+ + Y ++ ++ V R
Sbjct: 1898 VEFESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRA 1954
Query: 2175 FKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIV 2234
F VG+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +
Sbjct: 1955 FLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLIDNSWNIEHL 2012
Query: 2235 KKYFA 2239
++++A
Sbjct: 2013 RRFYA 2017
Score = 52.8 bits (125), Expect = 1e-04
Identities = 52/211 (24%), Positives = 93/211 (43%), Gaps = 16/211 (7%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + + M +Y
Sbjct: 420 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANY 476
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 477 LPVALADSARSWLHGLPRGTIESWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 535
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 536 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 589
Query: 333 VRDGIIVFEKAESSVNASKRYGNGHHKKKET 363
+ KAE +V ASK+ G K T
Sbjct: 590 NE-----YAKAEDAVTASKQSGPSWKPNKGT 615
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 834 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 892
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 893 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 932
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 892
>ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultivar-group)]
gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1950
Score = 686 bits (1770), Expect = 0.0
Identities = 400/1085 (36%), Positives = 587/1085 (53%), Gaps = 58/1085 (5%)
Query: 1169 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 1228
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 910 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 969
Query: 1229 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1288
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 970 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1029
Query: 1289 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1348
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1030 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1089
Query: 1349 EVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1408
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1090 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1149
Query: 1409 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 1468
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1150 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPE 1209
Query: 1469 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1524
Q+AF+ K L EPPIL P PL++Y++ + + VL +++E G K + IY
Sbjct: 1210 AQKAFEDFKKLLTEPPILASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1269
Query: 1525 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1584
++S+ D +TRY ++K + ++L HY H+ +++ P+ I G+
Sbjct: 1270 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1328
Query: 1585 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEE 1644
IA+W + L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1329 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1375
Query: 1645 PLINEGPDPNSKWGLVFDGAVNAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1704
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1376 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1423
Query: 1705 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHH 1764
+ G+ AI + IK L + GDS LV+NQ+ EW ++ Y R+L F +EL H
Sbjct: 1424 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1483
Query: 1765 IPRDENQMADALATLSSMFRVNHWNDVPIIKGQRLERPSHVFAIGDVIDQAGENVVGY-- 1822
+ R N+ AD LA S R +DV + + L P+ D A + V
Sbjct: 1484 VLRHNNEAADRLANFGSK-REMAPSDVFV---EHLYTPT--VPHKDTTQDADTHDVALVE 1537
Query: 1823 RPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDE 1879
W +FL S+E P QDK R++ R + + LYK++ +L RCV
Sbjct: 1538 ADWREPFIRFLTSQELP-----QDKDEAERISRRSKLYAMHEAELYKKSPSGILQRCVSL 1592
Query: 1880 HEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIH 1939
E QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH
Sbjct: 1593 EEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIH 1652
Query: 1940 VPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 1999
+P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1653 LPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADN 1711
Query: 2000 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 2059
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE A
Sbjct: 1712 ARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERA 1770
Query: 2060 NKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2114
N I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP E
Sbjct: 1771 NGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSE 1830
Query: 2115 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPRE 2174
VE SLR E + + R D L+ +EE R A+ R Y ++ ++ V R
Sbjct: 1831 VEFESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRA 1887
Query: 2175 FKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIV 2234
F VG+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +
Sbjct: 1888 FLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHL 1945
Query: 2235 KKYFA 2239
++++A
Sbjct: 1946 RRFYA 1950
Score = 53.9 bits (128), Expect = 6e-05
Identities = 61/265 (23%), Positives = 112/265 (42%), Gaps = 34/265 (12%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 353 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 409
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 410 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 468
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 469 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 522
Query: 333 VRDGIIVFEKAESSVNASKRY----------------GNGHHKKKETEVGMVSAGAGQSM 376
+ KAE +V ASK+ G+ +HK ++ + + A A S
Sbjct: 523 NE-----YTKAEDAVTASKQSGPSWKQNKGTPATGGGGSNNHKDRKRKPAELVATASHSS 577
Query: 377 ATVAPINATQ--MPPSYPYMPYSQH 399
+ +N M P+ P S H
Sbjct: 578 RQRSRVNTFDKIMNSQCPHHPNSNH 602
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 834 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 892
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 722 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 781
Query: 893 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 932
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 782 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 825
>gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531820|ref|NP_920212.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128689|gb|AAM92802.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 2017
Score = 686 bits (1769), Expect = 0.0
Identities = 406/1114 (36%), Positives = 598/1114 (53%), Gaps = 65/1114 (5%)
Query: 1147 KIGATLEEGVKQKIIQLLREYP-------DIFAWSYEDMPGLDPMIVEHRIPTKPECPPV 1199
KI + E K K I L P DIFAW DMPG+ ++EH + K + P+
Sbjct: 948 KISKSGESEAKTKKIPLDPSDPTKTANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPI 1007
Query: 1200 RQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLN 1259
+Q+LRR D IK E+ K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DLN
Sbjct: 1008 KQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLN 1067
Query: 1260 KASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYK 1319
K+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI++ D KTSFITP+G +CY
Sbjct: 1068 KSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYV 1127
Query: 1320 VMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKY 1379
MPFGL NAGATYQR + F I + VE YVDD++VK+ ++ + L + F +R +
Sbjct: 1128 TMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLILDLEETFASIRAF 1187
Query: 1380 KLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYI 1439
+++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K V+ G + +
Sbjct: 1188 RMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAAL 1247
Query: 1440 SRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYL 1499
SRF+S + P FKLL+K W E Q+AF+ K L EPP+L P PL++Y+
Sbjct: 1248 SRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYV 1307
Query: 1500 AVFDESMGCVLG-QQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLR 1555
+ + + VL +++E G K + IY++S+ D +TRY ++K + ++L
Sbjct: 1308 SATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLS 1367
Query: 1556 HYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1615
HY H+ +++ P+ I G+IA+W + L D+ FK + +IK LAD +A
Sbjct: 1368 HYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDLSFKPRISIKSQALADFVA 1426
Query: 1616 YQPLDDYQLIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGMGAV 1675
+ +C+E + + W + FDG+ G G G V
Sbjct: 1427 ----------------------EWTECQEDTTVKKME---HWTMHFDGSKRLSGTGAGVV 1461
Query: 1676 IVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGE 1735
++SP G + + I F ++N+AEYEA + G+ AI + IK L + GDS LV+NQ+ E
Sbjct: 1462 LISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKE 1521
Query: 1736 WETHHAKLIPYHDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIK 1795
W + Y R+L F +EL H+ R +N+ AD LA S V +DV +
Sbjct: 1522 WSCLDDNMKAYRQEVRKLEDKFDGLELSHVLRHDNEAADRLANFGSKREVAP-SDVFV-- 1578
Query: 1796 GQRLERPSHVFAIGDVIDQAGENVVGY--RPWYYDIKQFLLSREYPPGASKQDKKTLRRL 1853
+ L P+ D AG + V W + +FL S+E P QDK R+
Sbjct: 1579 -EHLYTPT--VPHKDTTQAAGIHDVAMVETDWREPLIRFLTSQELP-----QDKDEAERI 1630
Query: 1854 AGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLVHDVHDGTFGTHATGHTMSRKLLRA 1910
+ R +++ LYK++ +L RCV E QL+ D+H G G HA T+ K R
Sbjct: 1631 SRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQ 1690
Query: 1911 GYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKAS 1970
G++W D + R C CQ +A +IH+P L + WPF++WG+DM+G + KA
Sbjct: 1691 GFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAV 1749
Query: 1971 NGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNV 2030
G+ + VAID F+KW+EA +T F NI+ R+GVP++IITDNGT V
Sbjct: 1750 GGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGV 1808
Query: 2031 VQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYAL 2085
+ CE+F I+ +S P NG VE AN I R+ ++ W + LP L
Sbjct: 1809 FKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVL 1868
Query: 2086 HGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIE 2145
RTT +TG +PF LVYG EA+LP EVE SLR E + + R D L+ +E
Sbjct: 1869 WSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLE 1925
Query: 2146 EKRMDAMARGHSYQARMKAAFDKKVNPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYV 2205
E R A+ R Y ++ ++ V R F VG+LVL++ Q R K +P +EGP++
Sbjct: 1926 EVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFI 1983
Query: 2206 VKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2239
+ + G+ L DG + N N + +++++A
Sbjct: 1984 ISEVTRPGSYRLKREDGTLVDNSWNIEYLRRFYA 2017
Score = 53.9 bits (128), Expect = 6e-05
Identities = 61/265 (23%), Positives = 112/265 (42%), Gaps = 34/265 (12%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 420 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 476
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 477 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 535
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 536 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 589
Query: 333 VRDGIIVFEKAESSVNASKRY----------------GNGHHKKKETEVGMVSAGAGQSM 376
+ KAE +V ASK+ G+ +HK ++ + + A A S
Sbjct: 590 NE-----YAKAEDAVTASKQSGPSWKQNKGTPATGGGGSNNHKDRKRKPAELVATASHSS 644
Query: 377 ATVAPINATQ--MPPSYPYMPYSQH 399
+ +N M P+ P S H
Sbjct: 645 RQRSRVNTFDKIMNSQCPHHPNSNH 669
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 834 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 892
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 893 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 932
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 892
>ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46063437|gb|AAS79740.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1756
Score = 684 bits (1764), Expect = 0.0
Identities = 397/1085 (36%), Positives = 588/1085 (53%), Gaps = 58/1085 (5%)
Query: 1169 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 1228
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 716 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFVQDRKDAIKEELTKLLAAGFIK 775
Query: 1229 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1288
V +P+W+AN V V KK G+ RMCVD+ DLNK PKD F LP ID +VD+TA ++ SF+
Sbjct: 776 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFL 835
Query: 1289 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1348
D +SGY+QI++ D KTSFITP G +CY MPFGL NAGATYQR + F I + V
Sbjct: 836 DCYSGYHQIRLKESDCLKTSFITPIGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 895
Query: 1349 EVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1408
E YVDD+++K+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 896 EAYVDDVVIKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 955
Query: 1409 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 1468
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 956 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1015
Query: 1469 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1524
Q+AF+ K +L EPP+L P PL++Y++ + + VL +++E G K + IY
Sbjct: 1016 AQKAFEDFKKFLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1075
Query: 1525 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1584
++S+ D +TRY ++K + ++L HY H+ +++ P+ I G+
Sbjct: 1076 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1134
Query: 1585 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEE 1644
IA+W + L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1135 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1181
Query: 1645 PLINEGPDPNSKWGLVFDGAVNAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1704
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1182 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1229
Query: 1705 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHH 1764
+ G+ AI + IK L + GDS LV+NQ+ EW ++ Y R+L F +EL H
Sbjct: 1230 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1289
Query: 1765 IPRDENQMADALATLSSMFRVNHWNDVPIIKGQRLERPSHVFAIGDVIDQAGENVVGY-- 1822
+ R N+ AD LA S V +DV + + L P+ D AG + V
Sbjct: 1290 VLRHNNEAADRLANFGSKREVAP-SDVFV---EHLYTPT--VPHKDTTQIAGTHDVALVE 1343
Query: 1823 RPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDE 1879
W +FL S+E P QDK R++ R +++ LYK++ +L RCV
Sbjct: 1344 ADWREPFIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSL 1398
Query: 1880 HEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIH 1939
E QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH
Sbjct: 1399 EEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIH 1458
Query: 1940 VPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 1999
+P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1459 LPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADN 1517
Query: 2000 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 2059
F NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE A
Sbjct: 1518 ARDFF-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERA 1576
Query: 2060 NKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2114
N I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP E
Sbjct: 1577 NGMILQGIKARVFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSE 1636
Query: 2115 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPRE 2174
VE SLR E + + R D L+ +EE R A+ + Y ++ ++ V R
Sbjct: 1637 VEFESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRA 1693
Query: 2175 FKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIV 2234
F VG+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +
Sbjct: 1694 FLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHL 1751
Query: 2235 KKYFA 2239
++++A
Sbjct: 1752 RRFYA 1756
Score = 48.9 bits (115), Expect = 0.002
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 834 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 892
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 528 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 587
Query: 893 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTIHGE 945
ENF ++F+V D +Y +LGRP + AV + +K +++++ +
Sbjct: 588 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRRVLSLRSD 644
Score = 47.8 bits (112), Expect = 0.004
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 13/204 (6%)
Query: 161 QDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHYFQDSLME 220
QD + V FK +KY+G T P++ + Y + + M +Y +L +
Sbjct: 163 QDPIAGAGVTTSAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANYLPVALAD 222
Query: 221 DAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESFREYAQRW 279
A W L + + ++ EL F +++ T +P ++ L ++ QK ES R+Y +R+
Sbjct: 223 SARSWLHGLPRGTIRSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESLRDYIRRF 281
Query: 280 RGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIV 339
+I+ D + + F K ++ + + P T+ E+A
Sbjct: 282 SEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKANE----- 330
Query: 340 FEKAESSVNASKRYGNGHHKKKET 363
+ KAE +V ASK+ G K T
Sbjct: 331 YAKAEDAVTASKQSGPSWKPNKGT 354
>ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultivar-group)]
gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza sativa
(japonica cultivar-group)]
Length = 2008
Score = 679 bits (1752), Expect = 0.0
Identities = 397/1092 (36%), Positives = 587/1092 (53%), Gaps = 68/1092 (6%)
Query: 1160 IIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQ 1219
+I L+ DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+
Sbjct: 973 LITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELT 1032
Query: 1220 KQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNT 1279
K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+T
Sbjct: 1033 KLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDST 1092
Query: 1280 AQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTL 1339
A ++ SF+D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR +
Sbjct: 1093 AGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRC 1152
Query: 1340 FHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLG 1399
F I + VE YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLG
Sbjct: 1153 FSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFVSIRAFRMKLNPEKCTFGVPSGKLLG 1212
Query: 1400 FIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRK 1459
F+VS +GI+ +P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K
Sbjct: 1213 FMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKK 1272
Query: 1460 NQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG-QQDETG- 1517
W E Q+AF+ K L EPP+L P PL++Y++ + + VL +++E G
Sbjct: 1273 TDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLAVEREEEGH 1332
Query: 1518 --KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYI 1575
K + IY++S+ D +TRY ++K L H+ +++ P+ I
Sbjct: 1333 VQKVQRPIYFVSEVLADSKTRYPQVQK--------------LLYGHSVTVVTSF-PLGDI 1377
Query: 1576 FEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIM 1635
G+IA+W + L DI FK + +IK LAD +A ++ + D P E +
Sbjct: 1378 LHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENME 1432
Query: 1636 YLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGMGAVIVSPQGHHIPFTARILFECT 1695
+ W + FDG+ G G G V++SP G + + I F +
Sbjct: 1433 H--------------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSAS 1472
Query: 1696 NNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLT 1755
+N+AEYEA + G+ AI + IK L + GDS LV+NQ+ EW ++ Y R+L
Sbjct: 1473 HNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLED 1532
Query: 1756 YFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKGQRLERPSHVFAIGDVIDQA 1815
F +EL H+ R N+ AD LA S V +DV + + L P+ +
Sbjct: 1533 KFDGLELSHVLRHNNEAADRLANFGSKREVAP-SDVFV---EHLYTPTVPHKDTTQVAGT 1588
Query: 1816 GENVVGYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMV 1872
+ V W + +FL S+E P QDK R++ R +++ LYK++ +
Sbjct: 1589 HDVAVVETDWREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGI 1643
Query: 1873 LLRCVDEHEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQ 1932
L RCV E QL+ D+H G G HA T+ K R G++W D + R C CQ
Sbjct: 1644 LQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQ 1703
Query: 1933 IYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 1992
+A +IH+P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA
Sbjct: 1704 FFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPV 1762
Query: 1993 TNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQM 2052
+T F NI+ R+GVP++IITDNGT V + CE+F I+ +S P
Sbjct: 1763 VTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMS 1821
Query: 2053 NGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGM 2107
NG VE AN I R+ ++ W + LP L RTT +TG +PF LVYG
Sbjct: 1822 NGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGA 1881
Query: 2108 EAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFD 2167
EA+LP EVE SLR E + + R D L+ +EE R A+ R Y ++ +
Sbjct: 1882 EAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHN 1938
Query: 2168 KKVNPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPN 2227
+ V R F VG+LVL++ Q R K +P +EGP+++ + G+ L DG + N
Sbjct: 1939 RNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDN 1996
Query: 2228 PVNADIVKKYFA 2239
N + +++++A
Sbjct: 1997 SWNIEHLRRFYA 2008
Score = 52.0 bits (123), Expect = 2e-04
Identities = 57/251 (22%), Positives = 105/251 (41%), Gaps = 31/251 (12%)
Query: 168 KVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHYFQDSLMEDAAEWYT 227
+VD P FK +KY+G T P + + Y + ++ M +Y +L + A W
Sbjct: 427 RVDWPAGFKPTGIEKYDGTTNPGSWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLH 486
Query: 228 SLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESFREYAQRWRGAAARI 286
L + + ++ EL F +++ T +P ++ L ++ QK ES R+Y +R+ +I
Sbjct: 487 GLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKI 545
Query: 287 TPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 346
+ D + + F K ++ + + P T+ E+A + KAE +
Sbjct: 546 SDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKANE-----YAKAEDA 594
Query: 347 VNASKRY----------------GNGHHKKKETEVGMVSAGAGQSMATVAPINATQ--MP 388
V ASK+ G+ +HK ++ + + A A S + +N M
Sbjct: 595 VTASKQSGPSWKQNKGTPATGGGGSNNHKDRKRKPAELVATASHSSRQRSRVNTFDKIMN 654
Query: 389 PSYPYMPYSQH 399
P+ P S H
Sbjct: 655 SQCPHHPNSNH 665
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 834 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 892
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 785 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 844
Query: 893 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 932
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 845 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 888
>gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37536646|ref|NP_922625.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
gi|13876521|gb|AAK43497.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
Length = 2017
Score = 676 bits (1745), Expect = 0.0
Identities = 394/1085 (36%), Positives = 587/1085 (53%), Gaps = 58/1085 (5%)
Query: 1169 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 1228
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLYVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 1229 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1288
V +P+W+AN V V KK G+ RMCVD+ DLN + PKD F LP ID +VD+TA ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNISCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 1289 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1348
D + GY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1097 DCYLGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 1349 EVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1408
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 1409 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 1468
+P+K+ AI M P T+K V+ G + +SRF+S + P FKLL+K W +
Sbjct: 1217 ANPEKITAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPD 1276
Query: 1469 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1524
Q+AF+ K L EPP+L P PL++Y+A + + VL +++E G K + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYIAAASQVVSTVLVVEREEEGHVQKVQRPIY 1336
Query: 1525 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1584
++S+ D +TRY ++K + ++L HY +H+ +++ + I G+
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQSHSVTVVTSFS-LGDILHNREANGR 1395
Query: 1585 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEE 1644
IA+W + L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1442
Query: 1645 PLINEGPDPNSKWGLVFDGAVNAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1704
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 1705 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHH 1764
+ G+ AI + IK L + GDS LV+NQ+ EW ++ Y R+L F +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550
Query: 1765 IPRDENQMADALATLSSMFRVNHWNDVPIIKGQRLERPSHVFAIGDVIDQAGENVVGY-- 1822
+ R N+ AD LA S V +DV + + L P+ D AG + V
Sbjct: 1551 VLRHNNEAADRLANFGSKREVAP-SDVFV---EHLYTPT--VPHKDTTQIAGTHDVALVE 1604
Query: 1823 RPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDE 1879
W + +FL S+E P QDK R++ R +++ LYK++ +L RCV
Sbjct: 1605 ADWREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSL 1659
Query: 1880 HEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIH 1939
E QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH
Sbjct: 1660 EEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIH 1719
Query: 1940 VPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 1999
+P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1720 LPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADN 1778
Query: 2000 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 2059
F NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE A
Sbjct: 1779 ARDFF-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERA 1837
Query: 2060 NKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2114
N I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP E
Sbjct: 1838 NGMILQGIKARVFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSE 1897
Query: 2115 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPRE 2174
VE SLR E + + R D L+ +EE R A+ + Y ++ ++ V R
Sbjct: 1898 VEFESLRF---RNYREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRA 1954
Query: 2175 FKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIV 2234
F VG+LVL++ Q R K +P +EGP+++ G+ L DG + N N + +
Sbjct: 1955 FLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISDVTRPGSYRLKREDGTLVDNSWNIEHL 2012
Query: 2235 KKYFA 2239
++++A
Sbjct: 2013 RRFYA 2017
Score = 50.4 bits (119), Expect = 7e-04
Identities = 50/210 (23%), Positives = 89/210 (41%), Gaps = 14/210 (6%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + + M +Y
Sbjct: 420 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTIYGLAIRAAGGDSKAMANY 476
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFR 273
+L + A W L + + ++ EL F +++ + L ++ QK ES R
Sbjct: 477 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFEHPGTQYDLYNVIQKSGESLR 536
Query: 274 EYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAV 333
+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 537 DYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPK-----TVKLMFEKAN 590
Query: 334 RDGIIVFEKAESSVNASKRYGNGHHKKKET 363
+ KAE +V ASK+ G K T
Sbjct: 591 E-----YAKAEDAVTASKQSGPSWKPNKGT 615
Score = 47.8 bits (112), Expect = 0.004
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 834 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 892
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 893 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 932
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 849 RENFRTENISFEVDDFETAYHAILGRPALAKFMAVPHYTYMMMK 892
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,954,227,013
Number of Sequences: 2540612
Number of extensions: 179318210
Number of successful extensions: 625991
Number of sequences better than 10.0: 35468
Number of HSP's better than 10.0 without gapping: 4762
Number of HSP's successfully gapped in prelim test: 30768
Number of HSP's that attempted gapping in prelim test: 596847
Number of HSP's gapped (non-prelim): 46337
length of query: 2239
length of database: 863,360,394
effective HSP length: 144
effective length of query: 2095
effective length of database: 497,512,266
effective search space: 1042288197270
effective search space used: 1042288197270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 84 (37.0 bits)
Medicago: description of AC122728.10