BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122727.10 - phase: 1 /pseudo
(136 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_974088.1| SWIM zinc finger family protein [Arabidopsis th... 50 9e-06
gb|AAF24584.1| F22C12.1 [Arabidopsis thaliana] 50 9e-06
ref|NP_916969.1| P0445E10.20 [Oryza sativa (japonica cultivar-gr... 48 4e-05
ref|NP_176608.2| zinc finger protein-related [Arabidopsis thalia... 47 1e-04
gb|AAP53670.1| putative transposable element [Oryza sativa (japo... 46 2e-04
gb|AAP52233.1| putative retroelement [Oryza sativa (japonica cul... 46 2e-04
ref|XP_476312.1| putative mutator-like transposase [Oryza sativa... 46 2e-04
ref|XP_481373.1| hypothetical protein [Oryza sativa (japonica cu... 46 2e-04
ref|XP_475301.1| unknown protein [Oryza sativa (japonica cultiva... 46 2e-04
ref|XP_474817.1| OSJNBa0014F04.28 [Oryza sativa (japonica cultiv... 46 2e-04
ref|XP_469150.1| hypothetical protein [Oryza sativa (japonica cu... 46 2e-04
emb|CAE05572.2| OSJNBb0013O03.13 [Oryza sativa (japonica cultiva... 46 2e-04
emb|CAD41543.2| OSJNBb0091E11.13 [Oryza sativa (japonica cultiva... 46 2e-04
gb|AAV44119.1| putative polyprotein [Oryza sativa (japonica cult... 46 2e-04
gb|AAV44079.1| putative polyprotein [Oryza sativa (japonica cult... 46 2e-04
gb|AAU44336.1| putative polyprotein [Oryza sativa (japonica cult... 46 2e-04
gb|AAF78267.1| Contains weak similarity to 25.7 kDa protein from... 46 2e-04
dbj|BAB09619.1| mutator-like transposase-like protein [Arabidops... 45 3e-04
gb|AAG03112.1| F5A9.11 [Arabidopsis thaliana] 45 5e-04
gb|AAG50597.1| hypothetical protein [Arabidopsis thaliana] gi|25... 45 5e-04
>ref|NP_974088.1| SWIM zinc finger family protein [Arabidopsis thaliana]
Length = 750
Score = 50.4 bits (119), Expect = 9e-06
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 41 FLRTFKNTEMKKKVRNMGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGR 100
F R F + + ++R G + + Y N I++ + + KW+D P+ +W AHD GR
Sbjct: 485 FSRVFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWALAHDNGR 544
Query: 101 RWGHITTNISECF 113
R+G + N F
Sbjct: 545 RYGIMEINTKALF 557
>gb|AAF24584.1| F22C12.1 [Arabidopsis thaliana]
Length = 3290
Score = 50.4 bits (119), Expect = 9e-06
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 41 FLRTFKNTEMKKKVRNMGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGR 100
F R F + + ++R G + + Y N I++ + + KW+D P+ +W AHD GR
Sbjct: 2326 FSRVFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWALAHDNGR 2385
Query: 101 RWGHITTNISECF 113
R+G + N F
Sbjct: 2386 RYGIMEINTKALF 2398
Score = 48.5 bits (114), Expect = 3e-05
Identities = 23/73 (31%), Positives = 36/73 (48%)
Query: 41 FLRTFKNTEMKKKVRNMGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGR 100
F F++ +K V G + + Y N+I + + KW+D P+ QW QAHD GR
Sbjct: 1552 FHYVFQDDYLKNLVYEAGSTSEKEEFDSYMNEIEKKNSEARKWLDQFPQYQWAQAHDSGR 1611
Query: 101 RWGHITTNISECF 113
R+ +T + F
Sbjct: 1612 RYRVMTIDAENLF 1624
Score = 46.6 bits (109), Expect = 1e-04
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 41 FLRTFKNTEMKKKVRNMGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGR 100
F F++ ++ V+ G + + Y I + + KW+D P+ QW AHD GR
Sbjct: 724 FSGIFRDYYLEDLVKRAGSTSQKEEFDSYMKDIEKKNSEARKWLDQFPQNQWALAHDNGR 783
Query: 101 RWGHI---TTNISECFN 114
R+G + TT + E FN
Sbjct: 784 RYGIMEIETTTLFEDFN 800
Score = 46.6 bits (109), Expect = 1e-04
Identities = 24/81 (29%), Positives = 40/81 (48%), Gaps = 1/81 (1%)
Query: 41 FLRTFKNTEMKKKVRNMGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGR 100
FL F++ ++ V G + + Y N I++ + + KW+D P+ +W AHD G
Sbjct: 3049 FLGVFRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWALAHDSGL 3108
Query: 101 RWGHITTNISECFNNVLKGGP 121
R+G I + E V +G P
Sbjct: 3109 RYGIIEID-REALFAVCRGFP 3128
>ref|NP_916969.1| P0445E10.20 [Oryza sativa (japonica cultivar-group)]
Length = 1130
Score = 48.1 bits (113), Expect = 4e-05
Identities = 22/41 (53%), Positives = 32/41 (77%), Gaps = 3/41 (7%)
Query: 82 KWVDDN--PKKQWLQAHDQ-GRRWGHITTNISECFNNVLKG 119
KW++D K +W +A+D+ GRRWG++TTN++E FNNVL G
Sbjct: 516 KWLEDELLDKDKWSRAYDRNGRRWGYMTTNMAEQFNNVLVG 556
>ref|NP_176608.2| zinc finger protein-related [Arabidopsis thaliana]
gi|12323472|gb|AAG51711.1| hypothetical protein;
95918-93759 [Arabidopsis thaliana]
Length = 719
Score = 46.6 bits (109), Expect = 1e-04
Identities = 24/81 (29%), Positives = 40/81 (48%), Gaps = 1/81 (1%)
Query: 41 FLRTFKNTEMKKKVRNMGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGR 100
FL F++ ++ V G + + Y N I++ + + KW+D P+ +W AHD G
Sbjct: 478 FLGVFRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWALAHDSGL 537
Query: 101 RWGHITTNISECFNNVLKGGP 121
R+G I + E V +G P
Sbjct: 538 RYGIIEID-REALFAVCRGFP 557
>gb|AAP53670.1| putative transposable element [Oryza sativa (japonica
cultivar-group)] gi|37534162|ref|NP_921383.1| putative
transposable element [Oryza sativa (japonica
cultivar-group)] gi|21671916|gb|AAM74278.1| Putative
transposable element [Oryza sativa (japonica
cultivar-group)]
Length = 1592
Score = 46.2 bits (108), Expect = 2e-04
Identities = 21/41 (51%), Positives = 32/41 (77%), Gaps = 3/41 (7%)
Query: 82 KWVDDN--PKKQWLQAHDQ-GRRWGHITTNISECFNNVLKG 119
KW++D K +W +A+D+ GRRWG++TTN++E FN+VL G
Sbjct: 682 KWLEDELLDKDKWSRAYDRNGRRWGYMTTNMAEQFNSVLVG 722
>gb|AAP52233.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531288|ref|NP_919946.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655792|gb|AAN04209.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1460
Score = 46.2 bits (108), Expect = 2e-04
Identities = 21/41 (51%), Positives = 32/41 (77%), Gaps = 3/41 (7%)
Query: 82 KWVDDN--PKKQWLQAHDQ-GRRWGHITTNISECFNNVLKG 119
KW++D K +W +A+D+ GRRWG++TTN++E FN+VL G
Sbjct: 739 KWLEDELLDKDKWSRAYDRNGRRWGYMTTNMAEQFNSVLVG 779
>ref|XP_476312.1| putative mutator-like transposase [Oryza sativa (japonica
cultivar-group)]
Length = 1316
Score = 46.2 bits (108), Expect = 2e-04
Identities = 21/41 (51%), Positives = 32/41 (77%), Gaps = 3/41 (7%)
Query: 82 KWVDDN--PKKQWLQAHDQ-GRRWGHITTNISECFNNVLKG 119
KW++D K +W +A+D+ GRRWG++TTN++E FN+VL G
Sbjct: 491 KWLEDELLDKDKWSRAYDRNGRRWGYMTTNMAEQFNSVLVG 531
>ref|XP_481373.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|38175717|dbj|BAD01424.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 981
Score = 46.2 bits (108), Expect = 2e-04
Identities = 21/41 (51%), Positives = 32/41 (77%), Gaps = 3/41 (7%)
Query: 82 KWVDDN--PKKQWLQAHDQ-GRRWGHITTNISECFNNVLKG 119
KW++D K +W +A+D+ GRRWG++TTN++E FN+VL G
Sbjct: 50 KWLEDELLDKDKWSRAYDRNGRRWGYMTTNMAEQFNSVLVG 90
>ref|XP_475301.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|49328188|gb|AAT58884.1| unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 1564
Score = 46.2 bits (108), Expect = 2e-04
Identities = 21/41 (51%), Positives = 32/41 (77%), Gaps = 3/41 (7%)
Query: 82 KWVDDN--PKKQWLQAHDQ-GRRWGHITTNISECFNNVLKG 119
KW++D K +W +A+D+ GRRWG++TTN++E FN+VL G
Sbjct: 754 KWLEDELLDKDKWSRAYDRNGRRWGYMTTNMAEQFNSVLVG 794
>ref|XP_474817.1| OSJNBa0014F04.28 [Oryza sativa (japonica cultivar-group)]
gi|32488049|emb|CAE02862.1| OSJNBa0014F04.28 [Oryza
sativa (japonica cultivar-group)]
gi|38345180|emb|CAE03336.2| OSJNBb0005B05.3 [Oryza
sativa (japonica cultivar-group)]
Length = 1575
Score = 46.2 bits (108), Expect = 2e-04
Identities = 21/41 (51%), Positives = 32/41 (77%), Gaps = 3/41 (7%)
Query: 82 KWVDDN--PKKQWLQAHDQ-GRRWGHITTNISECFNNVLKG 119
KW++D K +W +A+D+ GRRWG++TTN++E FN+VL G
Sbjct: 639 KWLEDELLDKDKWSRAYDRNGRRWGYMTTNMAEQFNSVLVG 679
>ref|XP_469150.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|41469590|gb|AAS07333.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1038
Score = 46.2 bits (108), Expect = 2e-04
Identities = 21/41 (51%), Positives = 32/41 (77%), Gaps = 3/41 (7%)
Query: 82 KWVDDN--PKKQWLQAHDQ-GRRWGHITTNISECFNNVLKG 119
KW++D K +W +A+D+ GRRWG++TTN++E FN+VL G
Sbjct: 542 KWLEDELLDKDKWSRAYDRNGRRWGYMTTNMAEQFNSVLVG 582
>emb|CAE05572.2| OSJNBb0013O03.13 [Oryza sativa (japonica cultivar-group)]
Length = 1611
Score = 46.2 bits (108), Expect = 2e-04
Identities = 21/41 (51%), Positives = 32/41 (77%), Gaps = 3/41 (7%)
Query: 82 KWVDDN--PKKQWLQAHDQ-GRRWGHITTNISECFNNVLKG 119
KW++D K +W +A+D+ GRRWG++TTN++E FN+VL G
Sbjct: 649 KWLEDELLDKDKWSRAYDRNGRRWGYMTTNMAEQFNSVLVG 689
>emb|CAD41543.2| OSJNBb0091E11.13 [Oryza sativa (japonica cultivar-group)]
gi|50925901|ref|XP_473014.1| OSJNBb0091E11.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1107
Score = 46.2 bits (108), Expect = 2e-04
Identities = 21/41 (51%), Positives = 32/41 (77%), Gaps = 3/41 (7%)
Query: 82 KWVDDN--PKKQWLQAHDQ-GRRWGHITTNISECFNNVLKG 119
KW++D K +W +A+D+ GRRWG++TTN++E FN+VL G
Sbjct: 686 KWLEDELLDKDKWSRAYDRNGRRWGYMTTNMAEQFNSVLVG 726
>gb|AAV44119.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1525
Score = 46.2 bits (108), Expect = 2e-04
Identities = 21/41 (51%), Positives = 32/41 (77%), Gaps = 3/41 (7%)
Query: 82 KWVDDN--PKKQWLQAHDQ-GRRWGHITTNISECFNNVLKG 119
KW++D K +W +A+D+ GRRWG++TTN++E FN+VL G
Sbjct: 682 KWLEDELLDKDKWSRAYDRNGRRWGYMTTNMAEQFNSVLVG 722
>gb|AAV44079.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1567
Score = 46.2 bits (108), Expect = 2e-04
Identities = 21/41 (51%), Positives = 32/41 (77%), Gaps = 3/41 (7%)
Query: 82 KWVDDN--PKKQWLQAHDQ-GRRWGHITTNISECFNNVLKG 119
KW++D K +W +A+D+ GRRWG++TTN++E FN+VL G
Sbjct: 697 KWLEDELLDKDKWSRAYDRNGRRWGYMTTNMAEQFNSVLVG 737
>gb|AAU44336.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1378
Score = 46.2 bits (108), Expect = 2e-04
Identities = 21/41 (51%), Positives = 32/41 (77%), Gaps = 3/41 (7%)
Query: 82 KWVDDN--PKKQWLQAHDQ-GRRWGHITTNISECFNNVLKG 119
KW++D K +W +A+D+ GRRWG++TTN++E FN+VL G
Sbjct: 492 KWLEDELVDKDKWSRAYDRNGRRWGYMTTNMAEQFNSVLVG 532
>gb|AAF78267.1| Contains weak similarity to 25.7 kDa protein from Cicer arietinum
gb|AJ276422 and contains a transposase mutator PF|00872
domain. ESTs gb|T13756, gb|AA712647, gb|AA585980 come
from this gene. [Arabidopsis thaliana]
gi|25405166|pir||E96507 hypothetical protein T12C22.11
[imported] - Arabidopsis thaliana
Length = 1206
Score = 46.2 bits (108), Expect = 2e-04
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 40 NFLRTFKNTEMKKKVRNMGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQG 99
N +KN + + V+N GY+ T + QI + + K++ D W + + +G
Sbjct: 925 NIQTKYKNKALTQLVKNAGYAFTGTKFKEFYGQIETTNQNCGKYLHDIGMANWTRHYFRG 984
Query: 100 RRWGHITTNISECFNNVLKGGPQS 123
+R+ +T+NI+E N L G S
Sbjct: 985 QRFNLMTSNIAETLNKALNKGRSS 1008
>dbj|BAB09619.1| mutator-like transposase-like protein [Arabidopsis thaliana]
gi|20259876|gb|AAM13285.1| mutator-like transposase-like
protein [Arabidopsis thaliana]
gi|16648945|gb|AAL24324.1| mutator-like transposase-like
protein [Arabidopsis thaliana]
Length = 597
Score = 45.4 bits (106), Expect = 3e-04
Identities = 25/76 (32%), Positives = 38/76 (49%)
Query: 40 NFLRTFKNTEMKKKVRNMGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQG 99
NF TFKNT++ + Y++T N++ + S DVV+W + W A+ QG
Sbjct: 317 NFRDTFKNTKLVNIFWSAVYALTPAEFETKSNEMIEISQDVVQWFELYLPHLWAVAYFQG 376
Query: 100 RRWGHITTNISECFNN 115
R+GH I+E N
Sbjct: 377 VRYGHFGLGITEVLYN 392
>gb|AAG03112.1| F5A9.11 [Arabidopsis thaliana]
Length = 843
Score = 44.7 bits (104), Expect = 5e-04
Identities = 25/84 (29%), Positives = 39/84 (45%)
Query: 40 NFLRTFKNTEMKKKVRNMGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQG 99
N FKN + + V+N GY T NQI + +K++ D W + + G
Sbjct: 387 NIQARFKNRGLTQLVKNAGYEFTSGKFKTLYNQINAINPLCIKYLHDVGMAHWTRLYFPG 446
Query: 100 RRWGHITTNISECFNNVLKGGPQS 123
+R+ +T+NI+E N L G S
Sbjct: 447 QRFNLMTSNIAETLNKALFKGRSS 470
>gb|AAG50597.1| hypothetical protein [Arabidopsis thaliana] gi|25350250|pir||B86471
hypothetical protein T32G9.38 [imported] - Arabidopsis
thaliana
Length = 873
Score = 44.7 bits (104), Expect = 5e-04
Identities = 25/84 (29%), Positives = 39/84 (45%)
Query: 40 NFLRTFKNTEMKKKVRNMGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQG 99
N FKN + + V+N GY T NQI + +K++ D W + + G
Sbjct: 619 NIQARFKNRGLTQLVKNAGYEFTSGKFKTLYNQINAINPLCIKYLHDVGMAHWTRLYFPG 678
Query: 100 RRWGHITTNISECFNNVLKGGPQS 123
+R+ +T+NI+E N L G S
Sbjct: 679 QRFNLMTSNIAETLNKALFKGRSS 702
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.329 0.139 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,495,029
Number of Sequences: 2540612
Number of extensions: 8793653
Number of successful extensions: 24101
Number of sequences better than 10.0: 200
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 145
Number of HSP's that attempted gapping in prelim test: 23935
Number of HSP's gapped (non-prelim): 207
length of query: 136
length of database: 863,360,394
effective HSP length: 112
effective length of query: 24
effective length of database: 578,811,850
effective search space: 13891484400
effective search space used: 13891484400
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 67 (30.4 bits)
Medicago: description of AC122727.10