BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122725.8 - phase: 0 /pseudo
(297 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM12981.1| putative protein [Arabidopsis thaliana] gi|273633... 305 1e-81
sp|P37706|RRFC_DAUCA Ribosome recycling factor, chloroplast prec... 303 3e-81
emb|CAB41419.1| chloroplast ribosome recycling factor protein [S... 300 3e-80
emb|CAB86420.1| putative protein [Arabidopsis thaliana] gi|11277... 295 1e-78
ref|XP_478772.1| putative Ribosome recycling factor, chloroplast... 278 1e-73
emb|CAA51077.1| nuclear located protein [Daucus carota] 251 2e-65
sp|Q8YXK4|RRF_ANASP Ribosome recycling factor (Ribosome releasin... 205 1e-51
ref|YP_171723.1| ribosome recycling factor [Synechococcus elonga... 202 7e-51
ref|ZP_00159969.1| COG0233: Ribosome recycling factor [Anabaena ... 199 1e-49
ref|ZP_00163420.2| COG0233: Ribosome recycling factor [Synechoco... 197 3e-49
ref|NP_681050.1| ribosome releasing factor [Thermosynechococcus ... 194 2e-48
gb|AAP80705.1| ribosome recycling factor [Griffithsia japonica] 194 3e-48
ref|NP_441879.1| ribosome releasing factor [Synechocystis sp. PC... 192 1e-47
ref|ZP_00325628.1| COG0233: Ribosome recycling factor [Trichodes... 191 2e-47
ref|YP_175735.1| ribosome recycling factor [Bacillus clausii KSM... 191 3e-47
emb|CAE21420.1| Ribosome recycling factor [Prochlorococcus marin... 188 2e-46
ref|NP_923234.1| ribosome releasing factor [Gloeobacter violaceu... 188 2e-46
ref|YP_091461.1| Frr [Bacillus licheniformis ATCC 14580] gi|5234... 187 4e-46
ref|NP_970490.1| hypothetical protein Bd3784 [Bdellovibrio bacte... 185 1e-45
ref|YP_079046.1| ribosome recycling factor [Bacillus licheniform... 184 3e-45
>gb|AAM12981.1| putative protein [Arabidopsis thaliana] gi|27363350|gb|AAO11594.1|
At3g63190/F16M2_40 [Arabidopsis thaliana]
gi|15982709|gb|AAL09724.1| AT3g63190/F16M2_40
[Arabidopsis thaliana] gi|13926252|gb|AAK49599.1|
AT3g63190/F16M2_40 [Arabidopsis thaliana]
gi|22001953|sp|Q9M1X0|RRFC_ARATH Ribosome recycling
factor, chloroplast precursor (Ribosome releasing
factor, chloroplast) (RRF) (CpFrr) (RRFHCP)
gi|18412657|ref|NP_567141.1| ribosome recycling factor,
chloroplast, putative / ribosome releasing factor,
chloroplast, putative [Arabidopsis thaliana]
Length = 275
Score = 305 bits (781), Expect = 1e-81
Identities = 152/193 (78%), Positives = 181/193 (93%)
Query: 98 VRAATIEEIEAEKASIENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPV 157
+R+ATIEEIEAEK++IE DVKS+ME+T++ ++T+F+SIRTGR+ +MLDKIEVEYYGSPV
Sbjct: 80 IRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPV 139
Query: 158 SLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDR 217
SLK+IAQISTPD SSLL+ PYDKSSLKAIEKAIVNSD+G+TPNNDG+VIRLS+P LTSDR
Sbjct: 140 SLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDR 199
Query: 218 RKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIK 277
RKEL+K+V+KQ EEGKVALRNIRRDALK+Y+KLEK+KKLSEDNVKDLSSDLQKL D Y+K
Sbjct: 200 RKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMK 259
Query: 278 KVDALYKQKEKVL 290
K++ LYKQKEK L
Sbjct: 260 KIEELYKQKEKEL 272
>sp|P37706|RRFC_DAUCA Ribosome recycling factor, chloroplast precursor (Ribosome
releasing factor, chloroplast) (Nuclear located protein
D2)
Length = 227
Score = 303 bits (777), Expect = 3e-81
Identities = 151/197 (76%), Positives = 181/197 (91%)
Query: 94 RKGFVRAATIEEIEAEKASIENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYY 153
R G ++ AT+EEIEAEK+ IE VK RME+T++NVK +F+SIRT R+ P MLDKI+VEYY
Sbjct: 28 RTGTLKCATMEEIEAEKSLIEKSVKERMEKTIENVKASFNSIRTXRSNPDMLDKIKVEYY 87
Query: 154 GSPVSLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQL 213
G+P SLK+IAQISTPD+SSLLV+PYDKSSLK IEKAIVNSD+G+TPNNDG+VIRLSIPQL
Sbjct: 88 GTPTSLKSIAQISTPDSSSLLVNPYDKSSLKDIEKAIVNSDLGITPNNDGDVIRLSIPQL 147
Query: 214 TSDRRKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTD 273
T+DRRKEL+KIV+KQ EEGKVALRNIRRDA+K+Y+KLEK+KKLSEDNVKDLSSDLQK+ D
Sbjct: 148 TADRRKELSKIVAKQAEEGKVALRNIRRDAIKSYDKLEKEKKLSEDNVKDLSSDLQKVID 207
Query: 274 DYIKKVDALYKQKEKVL 290
+YIKKVD+++KQKEK L
Sbjct: 208 EYIKKVDSIFKQKEKEL 224
>emb|CAB41419.1| chloroplast ribosome recycling factor protein [Spinacia oleracea]
gi|7388105|sp|P82231|RRFC_SPIOL Ribosome recycling
factor, chloroplast precursor (Ribosome releasing
factor, chloroplast) (RRF) (CpFrr) (RRFHCP)
Length = 271
Score = 300 bits (768), Expect = 3e-80
Identities = 147/197 (74%), Positives = 180/197 (90%)
Query: 94 RKGFVRAATIEEIEAEKASIENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYY 153
R G R AT+EE+EAEK+ IE + K RME+T++ +++NF+S+RT RA+P+MLD+IEVEYY
Sbjct: 72 RAGTFRCATMEEVEAEKSLIETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYY 131
Query: 154 GSPVSLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQL 213
G+PVSLK+IAQISTPDASSLL+SPYDKSSLKAIEKAIV S +G++PNNDGEVIRLS+P L
Sbjct: 132 GTPVSLKSIAQISTPDASSLLISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPL 191
Query: 214 TSDRRKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTD 273
TSDRRKEL K+VSK EEGKVA+RNIRRDALK+YEKLEK+KKLSEDNVKDLS+DLQKLTD
Sbjct: 192 TSDRRKELAKVVSKLAEEGKVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTD 251
Query: 274 DYIKKVDALYKQKEKVL 290
+Y+KKV+++YKQKE+ L
Sbjct: 252 EYMKKVESIYKQKEQEL 268
>emb|CAB86420.1| putative protein [Arabidopsis thaliana] gi|11277801|pir||T48108
hypothetical protein F16M2.40 - Arabidopsis thaliana
Length = 289
Score = 295 bits (755), Expect = 1e-78
Identities = 150/199 (75%), Positives = 180/199 (90%), Gaps = 6/199 (3%)
Query: 98 VRAATIEEIEAEKASIENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPV 157
+R+ATIEEIEAEK++IE DVKS+ME+T++ ++T+F+SIRTGR+ +MLDKIEVEYYGSPV
Sbjct: 88 IRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPV 147
Query: 158 SLKTIAQISTPDASSLLVSPYDKS------SLKAIEKAIVNSDVGMTPNNDGEVIRLSIP 211
SLK+IAQISTPD SSLL+ PYDKS +L AIEKAIVNSD+G+TPNNDG+VIRLS+P
Sbjct: 148 SLKSIAQISTPDGSSLLLQPYDKSRYMTNGALMAIEKAIVNSDLGVTPNNDGDVIRLSLP 207
Query: 212 QLTSDRRKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKL 271
LTSDRRKEL+K+V+KQ EEGKVALRNIRRDALK+Y+KLEK+KKLSEDNVKDLSSDLQKL
Sbjct: 208 PLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKL 267
Query: 272 TDDYIKKVDALYKQKEKVL 290
D Y+KK++ LYKQKEK L
Sbjct: 268 IDVYMKKIEELYKQKEKEL 286
>ref|XP_478772.1| putative Ribosome recycling factor, chloroplast precursor [Oryza
sativa (japonica cultivar-group)]
gi|34394208|dbj|BAC84660.1| putative Ribosome recycling
factor, chloroplast precursor [Oryza sativa (japonica
cultivar-group)]
Length = 266
Score = 278 bits (711), Expect = 1e-73
Identities = 133/197 (67%), Positives = 175/197 (88%)
Query: 94 RKGFVRAATIEEIEAEKASIENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYY 153
++ +R ATIEEIEAEK+ IE+ + RME+ ++ V+ NF+++RTGRA P+MLD+IEVEYY
Sbjct: 67 KRAVLRHATIEEIEAEKSVIEDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYY 126
Query: 154 GSPVSLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQL 213
G+PV+LK+IAQI+TPDA+SLL+ PYDKSSLK IEK IV +++G+TP+NDGEVIR+++P L
Sbjct: 127 GTPVNLKSIAQINTPDATSLLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPL 186
Query: 214 TSDRRKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTD 273
TSDRRKEL K V+K EEGKVA+RNIRRDA+KAY+KLEK+KKLSEDNVKDLS+DLQK+TD
Sbjct: 187 TSDRRKELAKTVAKLAEEGKVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTD 246
Query: 274 DYIKKVDALYKQKEKVL 290
+Y+KK++A+ KQKE+ L
Sbjct: 247 EYMKKIEAIQKQKEQEL 263
>emb|CAA51077.1| nuclear located protein [Daucus carota]
Length = 167
Score = 251 bits (640), Expect = 2e-65
Identities = 124/152 (81%), Positives = 145/152 (94%)
Query: 139 RATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGMT 198
R+ P MLDKI+VEYYG+P SLK+IAQISTPD+SSLLV+PYDKSSLK IEKAIVNSD+G+T
Sbjct: 13 RSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSLKDIEKAIVNSDLGIT 72
Query: 199 PNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLSE 258
PNNDG+VIRLSIPQLT+DRRKEL+KIV+KQ EEGKVALRNIRRDA+K+Y+KLEK+KKLSE
Sbjct: 73 PNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIRRDAIKSYDKLEKEKKLSE 132
Query: 259 DNVKDLSSDLQKLTDDYIKKVDALYKQKEKVL 290
DNVKDLSSDLQK+ D+YIKKVD+++KQKEK L
Sbjct: 133 DNVKDLSSDLQKVIDEYIKKVDSIFKQKEKEL 164
>sp|Q8YXK4|RRF_ANASP Ribosome recycling factor (Ribosome releasing factor) (RRF)
gi|17130555|dbj|BAB73165.1| ribosome recycling factor
[Nostoc sp. PCC 7120] gi|17228703|ref|NP_485251.1|
ribosome recycling factor [Nostoc sp. PCC 7120]
Length = 182
Score = 205 bits (522), Expect = 1e-51
Identities = 100/173 (57%), Positives = 134/173 (76%)
Query: 116 DVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLV 175
+ +S+M+ T++ + F++IRTGRA S+LDK+ V+YYGSP LK++A ISTPDA+++L+
Sbjct: 5 EAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTILI 64
Query: 176 SPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVA 235
PYDKSSL +EKAI SDVG+TP+NDG VIRL+IP LTSDRRKEL KI +K EEG+VA
Sbjct: 65 QPYDKSSLNIVEKAISLSDVGLTPSNDGAVIRLNIPPLTSDRRKELVKIAAKYAEEGRVA 124
Query: 236 LRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
+RNIRRDA+ + KLEK+ ++SED KD LQKLT+ Y ++D L +KEK
Sbjct: 125 IRNIRRDAVDSIRKLEKNAEVSEDEAKDQQDKLQKLTNKYTARIDELLVEKEK 177
>ref|YP_171723.1| ribosome recycling factor [Synechococcus elongatus PCC 6301]
gi|56685981|dbj|BAD79203.1| ribosome recycling factor
[Synechococcus elongatus PCC 6301]
gi|60390663|sp|Q5N3B7|RRF_SYNP6 Ribosome recycling
factor (Ribosome releasing factor) (RRF)
Length = 182
Score = 202 bits (515), Expect = 7e-51
Identities = 98/173 (56%), Positives = 134/173 (76%)
Query: 116 DVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLV 175
DV+S M+++++ +F++IRTGRA S+LDKI V+YYGS LK++A ISTPDAS+L +
Sbjct: 5 DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQI 64
Query: 176 SPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVA 235
P+D+SS+ AIEKAI SD+G+TPNNDG++IRL+IP LTSDRRKEL K+ +K EEGKVA
Sbjct: 65 QPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVA 124
Query: 236 LRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
+RN+RRDA+ + KLEK ++SED+ +D +QKLTD + KV+ L KEK
Sbjct: 125 IRNVRRDAIDSIRKLEKSGEISEDDARDQQDQVQKLTDKFSAKVEQLLSDKEK 177
>ref|ZP_00159969.1| COG0233: Ribosome recycling factor [Anabaena variabilis ATCC 29413]
Length = 182
Score = 199 bits (505), Expect = 1e-49
Identities = 96/173 (55%), Positives = 131/173 (75%)
Query: 116 DVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLV 175
+ +S+M+ T++ + F++IRTGRA S+LDK+ V+YYGSP LK++A ISTPDA+++ +
Sbjct: 5 EAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTIQI 64
Query: 176 SPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVA 235
PYDK+SL IEKAI SDVG+TP+NDG IRL+IP LTSDRRKEL K+ +K EEG+VA
Sbjct: 65 QPYDKTSLNIIEKAISLSDVGLTPSNDGSAIRLNIPPLTSDRRKELVKLAAKYAEEGRVA 124
Query: 236 LRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
+RNIRRDA+ + K EK+ ++SED KD LQKLT+ Y ++D L +KEK
Sbjct: 125 IRNIRRDAIDSIRKQEKNAEVSEDEAKDQQDKLQKLTNKYTARIDELLAEKEK 177
>ref|ZP_00163420.2| COG0233: Ribosome recycling factor [Synechococcus elongatus PCC
7942]
Length = 173
Score = 197 bits (501), Expect = 3e-49
Identities = 95/168 (56%), Positives = 130/168 (76%)
Query: 121 MERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSPYDK 180
M+++++ +F++IRTGRA S+LDKI V+YYGS LK++A ISTPDAS+L + P+D+
Sbjct: 1 MQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQIQPFDR 60
Query: 181 SSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVALRNIR 240
SS+ AIEKAI SD+G+TPNNDG++IRL+IP LTSDRRKEL K+ +K EEGKVA+RN+R
Sbjct: 61 SSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVAIRNVR 120
Query: 241 RDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
RDA+ + KLEK ++SED+ +D +QKLTD + KV+ L KEK
Sbjct: 121 RDAIDSIRKLEKSGEISEDDARDQQDQVQKLTDKFSAKVEQLLSDKEK 168
>ref|NP_681050.1| ribosome releasing factor [Thermosynechococcus elongatus BP-1]
gi|34222747|sp|Q8DM64|RRF_SYNEL Ribosome recycling
factor (Ribosome releasing factor) (RRF)
gi|22293980|dbj|BAC07812.1| ribosome releasing factor
[Thermosynechococcus elongatus BP-1]
Length = 182
Score = 194 bits (494), Expect = 2e-48
Identities = 93/173 (53%), Positives = 134/173 (76%)
Query: 116 DVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLV 175
DV+ RM+++++ + +F+SIRTGRA ++LD++ V+YYG+ L+++A +STPDA+++L+
Sbjct: 5 DVEERMQKSVEATQHDFNSIRTGRANAALLDRVMVDYYGTETPLRSLANVSTPDATTILI 64
Query: 176 SPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVA 235
PYD+S+L +IEKAI SD+G+TPNNDG +RL+IP LT++RRKEL K +K E GKVA
Sbjct: 65 QPYDRSTLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERRKELVKTAAKIAEGGKVA 124
Query: 236 LRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
+RNIRRDA+ +K K +L+ED VKDL +QKLTD YI K+DAL +KEK
Sbjct: 125 IRNIRRDAIDHIKKAGKAGELTEDEVKDLQEKVQKLTDKYIGKIDALLAEKEK 177
>gb|AAP80705.1| ribosome recycling factor [Griffithsia japonica]
Length = 230
Score = 194 bits (493), Expect = 3e-48
Identities = 91/179 (50%), Positives = 135/179 (74%), Gaps = 4/179 (2%)
Query: 114 ENDV----KSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPD 169
END ++RM++T+D+VK+ F+S+RTGRA+PS+LD+I+V YYG+ L ++A +S
Sbjct: 47 ENDTAEKSEARMQKTIDSVKSAFNSVRTGRASPSLLDRIQVNYYGADTPLNSLATVSVSG 106
Query: 170 ASSLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQV 229
S+L+V PYDKS + IE++++ SD+G+TPN+DG IRLSIPQLT +RR +L K V
Sbjct: 107 TSTLVVEPYDKSCISDIERSLMESDIGLTPNSDGSTIRLSIPQLTKERRSQLVKQVKSMA 166
Query: 230 EEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
E+G+VA+RNIRRDA+ + +KLEK +L +D K L +QKLTD Y+K ++++YKQKE+
Sbjct: 167 EDGRVAIRNIRRDAVDSIKKLEKKSELGKDESKTLQDRVQKLTDKYVKTIESVYKQKEE 225
>ref|NP_441879.1| ribosome releasing factor [Synechocystis sp. PCC 6803]
gi|1653645|dbj|BAA18557.1| ribosome releasing factor
[Synechocystis sp. PCC 6803]
gi|3122780|sp|P74456|RRF_SYNY3 Ribosome recycling factor
(Ribosome releasing factor) (RRF)
Length = 182
Score = 192 bits (487), Expect = 1e-47
Identities = 91/173 (52%), Positives = 129/173 (73%)
Query: 116 DVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLV 175
++K M+++++ + +F++IRTGRA S+LD+I VEYYG+ LK++A I TPDAS++++
Sbjct: 5 ELKDHMQKSVEATQRSFNTIRTGRANASLLDRITVEYYGAETPLKSLATIGTPDASTIVI 64
Query: 176 SPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVA 235
P+D S+ IEKAI SD+G+TPNNDG+VIRL+IP LT++RRKEL K+ K EEGKVA
Sbjct: 65 QPFDMGSIGTIEKAISLSDLGLTPNNDGKVIRLNIPPLTAERRKELVKVAGKLAEEGKVA 124
Query: 236 LRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
+RNIRRDA+ K EK+ +SED +DL ++QKLTD K++D L KEK
Sbjct: 125 IRNIRRDAVDEVRKQEKNSDISEDEARDLQEEIQKLTDQSTKRIDELLAAKEK 177
>ref|ZP_00325628.1| COG0233: Ribosome recycling factor [Trichodesmium erythraeum
IMS101]
Length = 182
Score = 191 bits (485), Expect = 2e-47
Identities = 90/173 (52%), Positives = 128/173 (73%)
Query: 116 DVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLV 175
+ + +M++ ++ K +F+++RTGRA S+LD++ VEYYGSP LK++A I PDAS++ +
Sbjct: 5 EAEEKMQKAIEATKNSFNTVRTGRANASLLDRVMVEYYGSPTQLKSMANIGIPDASTITI 64
Query: 176 SPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVA 235
PYDK+SL IEKAI SDVG+TPNNDG +IRL+IP LT++RR+E+ K +K EEGKV+
Sbjct: 65 QPYDKTSLGLIEKAINMSDVGLTPNNDGSIIRLNIPALTAERRQEMVKKTAKLAEEGKVS 124
Query: 236 LRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
+RNIRRDA+ + K EK+ +S+D +DL +QK TD YI K+D L KEK
Sbjct: 125 IRNIRRDAVDSIRKQEKNSDISKDESRDLQDKVQKKTDKYIAKIDELLAAKEK 177
>ref|YP_175735.1| ribosome recycling factor [Bacillus clausii KSM-K16]
gi|56910247|dbj|BAD64774.1| ribosome recycling factor
[Bacillus clausii KSM-K16]
gi|60390232|sp|Q5WFT1|RRF_BACSK Ribosome recycling
factor (Ribosome releasing factor) (RRF)
Length = 185
Score = 191 bits (484), Expect = 3e-47
Identities = 86/176 (48%), Positives = 133/176 (74%)
Query: 113 IENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASS 172
I+ D K+RM++ +D + + +R GRA P++LD++ VEYYG+ L +A ++ P+A
Sbjct: 5 IKADAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARL 64
Query: 173 LLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEG 232
LL++PYDK+++ +IEKAI+ SD+G+TP+NDG+VIR++IP LT +RRK+L ++VSK EE
Sbjct: 65 LLITPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEES 124
Query: 233 KVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
KVA+RNIRRDA +KL+KD +++ED ++ + D+QKLTD Y+ K+D KQKE+
Sbjct: 125 KVAVRNIRRDANDELKKLQKDGEMTEDELRSATDDIQKLTDTYVAKIDEKAKQKEQ 180
>emb|CAE21420.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9313]
gi|33863513|ref|NP_895073.1| Ribosome recycling factor
[Prochlorococcus marinus str. MIT 9313]
gi|39932089|sp|Q7V6C1|RRF_PROMM Ribosome recycling
factor (Ribosome releasing factor) (RRF)
Length = 182
Score = 188 bits (477), Expect = 2e-46
Identities = 86/172 (50%), Positives = 127/172 (73%)
Query: 116 DVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLV 175
++K M ++++ + NF++IRTGRA PS+LD+I VEYYG+ LK++A ISTPD+ ++ +
Sbjct: 5 ELKDNMHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIAI 64
Query: 176 SPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVA 235
P+D S+ IEKAI SD+G+TPNNDG++IR+++P LT +RRKE K+ ++ EEGKVA
Sbjct: 65 QPFDNGSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAARYAEEGKVA 124
Query: 236 LRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKE 287
LRNIRRDA+ +KLEKD +LS+D D +QKLTD +I +++ +KE
Sbjct: 125 LRNIRRDAIDKVKKLEKDAELSKDQSHDEQDGIQKLTDTFITEIEKYLAEKE 176
>ref|NP_923234.1| ribosome releasing factor [Gloeobacter violaceus PCC 7421]
gi|39932053|sp|Q7NNX0|RRF_GLOVI Ribosome recycling
factor (Ribosome releasing factor) (RRF)
gi|35210848|dbj|BAC88229.1| ribosome releasing factor
[Gloeobacter violaceus PCC 7421]
Length = 182
Score = 188 bits (477), Expect = 2e-46
Identities = 89/168 (52%), Positives = 127/168 (74%)
Query: 121 MERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSPYDK 180
M + ++ NF++IRTGRA+ S+LD+I VEYYG P LKT+A I+TPDAS++L+ PYD
Sbjct: 10 MRKAIEATAGNFATIRTGRASTSLLDRINVEYYGQPTPLKTLATITTPDASTVLIQPYDP 69
Query: 181 SSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVALRNIR 240
SSL+ IEK I+ SD+G+ P+NDG+ IRL+IP LT++RRK+L K++ EEG+VA+RNIR
Sbjct: 70 SSLRLIEKTILESDLGLPPSNDGKTIRLNIPPLTAERRKDLVKVLRNLAEEGRVAVRNIR 129
Query: 241 RDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
R A+ K EKD K+SED + L ++QKLTD I++++ L++ KEK
Sbjct: 130 RHAIDEVRKEEKDAKVSEDEARRLQDEVQKLTDKSIQQIEKLFEAKEK 177
>ref|YP_091461.1| Frr [Bacillus licheniformis ATCC 14580] gi|52348134|gb|AAU40768.1|
Frr [Bacillus licheniformis DSM 13]
gi|60390243|sp|Q65JJ6|RRF_BACLD Ribosome recycling
factor (Ribosome releasing factor) (RRF)
Length = 185
Score = 187 bits (474), Expect = 4e-46
Identities = 86/176 (48%), Positives = 129/176 (72%)
Query: 113 IENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASS 172
+ N+ K RM++ + + +++R GRA PS+LDK+ VEYYG+ L IA I+ P+A
Sbjct: 5 VMNETKERMQKAISAYQRELATVRAGRANPSLLDKVAVEYYGAQTPLNQIASITVPEARM 64
Query: 173 LLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEG 232
L+++PYDK++L IEKAI +D+G+TP+NDG +IR++IP LT +RRKEL K+V K E+
Sbjct: 65 LVITPYDKTALGDIEKAIQKADLGVTPSNDGNIIRITIPPLTEERRKELAKLVKKYSEDA 124
Query: 233 KVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
KVA+RNIRRDA +KLEK+ +++ED ++ + D+QKLTD+Y+ K+D + K KEK
Sbjct: 125 KVAVRNIRRDANDDLKKLEKNGEMTEDELRSSTEDVQKLTDEYVSKIDEITKDKEK 180
>ref|NP_970490.1| hypothetical protein Bd3784 [Bdellovibrio bacteriovorus HD100]
gi|39577321|emb|CAE81144.1| rrf [Bdellovibrio
bacteriovorus HD100] gi|47116990|sp|P61302|RRF_BDEBA
Ribosome recycling factor (Ribosome releasing factor)
(RRF)
Length = 186
Score = 185 bits (470), Expect = 1e-45
Identities = 90/180 (50%), Positives = 129/180 (71%)
Query: 111 ASIENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDA 170
A ++ + +++ME+TL+++ +RTGRA SMLD I V YYG+P L +A ISTPDA
Sbjct: 4 ADVKKNAQAKMEKTLNSLSEELKKVRTGRAQVSMLDGIRVNYYGTPSPLSQVASISTPDA 63
Query: 171 SSLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVE 230
S L++P++ + LK IE+AI+ S++GM P NDG+VIRL +P LT +RRK+L K V K E
Sbjct: 64 KSFLIAPWEVAILKDIEQAIIKSELGMAPMNDGKVIRLKVPDLTEERRKDLAKQVKKIAE 123
Query: 231 EGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEKVL 290
E +VA+R RRDA +KL+KDK +SED K +D+QK+TDD+IKKVD + ++KEK +
Sbjct: 124 EARVAVRMARRDANDEVKKLQKDKAVSEDEGKKAEADIQKVTDDFIKKVDQVAEEKEKAI 183
>ref|YP_079046.1| ribosome recycling factor [Bacillus licheniformis ATCC 14580]
gi|52003466|gb|AAU23408.1| ribosome recycling factor
[Bacillus licheniformis ATCC 14580]
Length = 185
Score = 184 bits (467), Expect = 3e-45
Identities = 85/176 (48%), Positives = 128/176 (72%)
Query: 113 IENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASS 172
+ N+ K RM++ + + +++R GRA PS+LDK+ VEYYG+ L IA I+ P+A
Sbjct: 5 VMNETKERMQKAISAYQRELATVRAGRANPSLLDKVAVEYYGAQTPLNQIASITVPEARM 64
Query: 173 LLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEG 232
L+++PYDK++L I KAI +D+G+TP+NDG +IR++IP LT +RRKEL K+V K E+
Sbjct: 65 LVITPYDKTALGDIGKAIQKADLGVTPSNDGNIIRITIPPLTEERRKELAKLVKKYSEDA 124
Query: 233 KVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
KVA+RNIRRDA +KLEK+ +++ED ++ + D+QKLTD+Y+ K+D + K KEK
Sbjct: 125 KVAVRNIRRDANDDLKKLEKNGEMTEDELRSSTEDVQKLTDEYVSKIDEITKDKEK 180
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.133 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,102,326
Number of Sequences: 2540612
Number of extensions: 16278836
Number of successful extensions: 81286
Number of sequences better than 10.0: 767
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 444
Number of HSP's that attempted gapping in prelim test: 80141
Number of HSP's gapped (non-prelim): 1416
length of query: 297
length of database: 863,360,394
effective HSP length: 127
effective length of query: 170
effective length of database: 540,702,670
effective search space: 91919453900
effective search space used: 91919453900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)
Medicago: description of AC122725.8