BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122169.6 + phase: 0
(622 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR07943.1| DNA gyrase B subunit [Nicotiana benthamiana] 1085 0.0
gb|AAM98305.1| At3g10270/F14P13_13 [Arabidopsis thaliana] gi|184... 1049 0.0
gb|AAF02815.1| putative DNA gyrase subunit B [Arabidopsis thalia... 1035 0.0
emb|CAC05495.1| DNA gyrase subunit B-like protein [Arabidopsis t... 1033 0.0
dbj|BAD81163.1| putative DNA gyrase B subunit [Oryza sativa (jap... 1023 0.0
ref|NP_912918.1| unnamed protein product [Oryza sativa (japonica... 997 0.0
ref|YP_172325.1| DNA gyrase B subunit [Synechococcus elongatus P... 778 0.0
gb|AAQ00840.1| DNA gyrase B subunit [Prochlorococcus marinus sub... 773 0.0
dbj|BAB76964.1| DNA gyrase B subunit [Nostoc sp. PCC 7120] gi|17... 773 0.0
ref|ZP_00158090.2| COG0187: Type IIA topoisomerase (DNA gyrase/t... 772 0.0
ref|ZP_00513575.1| DNA gyrase, B subunit [Crocosphaera watsonii ... 765 0.0
emb|CAE06610.1| DNA gyrase subunit B [Synechococcus sp. WH 8102]... 759 0.0
ref|NP_681436.1| DNA gyrase subunit B [Thermosynechococcus elong... 758 0.0
emb|CAE20296.1| DNA gyrase, subunit B [Prochlorococcus marinus s... 754 0.0
ref|NP_893751.1| DNA gyrase, subunit B [Prochlorococcus marinus ... 739 0.0
ref|NP_925452.1| DNA gyrase subunit B [Gloeobacter violaceus PCC... 732 0.0
dbj|BAB86972.1| DNA gyrase subunit B [Plectonema boryanum] 684 0.0
ref|NP_850762.1| DNA topoisomerase, ATP-hydrolyzing, putative / ... 683 0.0
dbj|BAB86974.1| DNA gyrase subunit B [Synechococcus sp.] 680 0.0
gb|AAK39952.1| DNA gyrase subunit B [Guillardia theta] gi|252927... 647 0.0
>gb|AAR07943.1| DNA gyrase B subunit [Nicotiana benthamiana]
Length = 731
Score = 1085 bits (2805), Expect = 0.0
Identities = 530/622 (85%), Positives = 590/622 (94%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTGPRGLHHLVYEILDNAVDEAQAGFA+KIDVVLHAD+SVSIADNGRGIPT++HP
Sbjct: 110 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFATKIDVVLHADNSVSIADNGRGIPTELHPV 169
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
TKKS+LETVLT+LHAGGKFGG +SGY+VSGGLHGVGLSVVNALS+ALEVT+WR+G EY Q
Sbjct: 170 TKKSSLETVLTVLHAGGKFGGSSSGYNVSGGLHGVGLSVVNALSQALEVTIWRDGKEYQQ 229
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
YSRGKP+TTL C LP E +DRQGT I+FWPDKEVFTT ++F+YNTIAGRIRELAFLNP
Sbjct: 230 KYSRGKPITTLICHDLPVEMRDRQGTAIRFWPDKEVFTTEMQFDYNTIAGRIRELAFLNP 289
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRKEIDGITVDIAL 240
+LTIAL+KED DPEK+Q NEYFYAGGL EYV++LN DKK +HDVL FRKE DGIT+D+AL
Sbjct: 290 ELTIALKKEDIDPEKIQCNEYFYAGGLVEYVKWLNADKKPLHDVLGFRKEADGITIDMAL 349
Query: 241 QWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEHV 300
QWC DAYSDT+LGYANSIRT+DGGTHIDG+KA+LTR LN+LGKKSK IKEKDI+LSGEHV
Sbjct: 350 QWCSDAYSDTMLGYANSIRTIDGGTHIDGVKAALTRILNNLGKKSKTIKEKDISLSGEHV 409
Query: 301 REGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSKA 360
REGLTCV+SVKVPNPEFEGQTKTRLGNPEVRKVVDQS+QEYLTEYLELHPDVLDS+LSK+
Sbjct: 410 REGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 469
Query: 361 LNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQG 420
LNA KAALAAKRARELVRQKSVL+SSSLPGKLADCS++NPE+ EIFIVEGDSAGGSAKQG
Sbjct: 470 LNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSATNPEEAEIFIVEGDSAGGSAKQG 529
Query: 421 RDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIII 480
RDRRFQAILPLRGKILNIER+DEAAMYKNEEIQNLILGLGLGVKGEDFKK+ALRYHKIII
Sbjct: 530 RDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYHKIII 589
Query: 481 LTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKKL 540
LTDADVDGAHIRTLLLTFF+RYQRALF+EG IYVGVPPLYKV RGKQV+YCYD+A+LKK+
Sbjct: 590 LTDADVDGAHIRTLLLTFFFRYQRALFEEGCIYVGVPPLYKVERGKQVYYCYDDAELKKV 649
Query: 541 KSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGAR 600
+ SF NASYN+QRFKGLGEMMP QLWETTM+PE RLLK+L VEDAAEAN+VFSSLMG+R
Sbjct: 650 QRSFPSNASYNIQRFKGLGEMMPAQLWETTMNPETRLLKQLVVEDAAEANVVFSSLMGSR 709
Query: 601 VDVRKELIQNAANMIDLDQLDI 622
VD+RK+LIQN+A+M++L+QLDI
Sbjct: 710 VDIRKQLIQNSASMMNLEQLDI 731
>gb|AAM98305.1| At3g10270/F14P13_13 [Arabidopsis thaliana]
gi|18414465|ref|NP_568133.1| DNA topoisomerase,
ATP-hydrolyzing, putative / DNA topoisomerase II,
putative / DNA gyrase, putative [Arabidopsis thaliana]
gi|14517374|gb|AAK62578.1| AT3g10270/F14P13_13
[Arabidopsis thaliana]
Length = 732
Score = 1049 bits (2712), Expect = 0.0
Identities = 510/622 (81%), Positives = 576/622 (91%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTG RGLHHLVYEILDNA+DEAQAG+ASK+DVVLHAD SVS+ DNGRGIPTD+HP
Sbjct: 111 MYIGSTGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDLHPA 170
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
TKKS+LETVLT+LHAGGKFGG +SGYSVSGGLHGVGLSVVNALSEALEV+VWR+G+E+ Q
Sbjct: 171 TKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGMEHKQ 230
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
YSRGKP+TTL C +LP E+K +GT I+FWPDKEVFTTAIEF++NTIAGRIRELAFLNP
Sbjct: 231 NYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAFLNP 290
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRKEIDGITVDIAL 240
K+TI+L+KED+DPEK Q +EY +AGGL EYV +LNTDK +HDVL FR+EI+G TVD+AL
Sbjct: 291 KVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGATVDVAL 350
Query: 241 QWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEHV 300
QWC DAYSDT+LGYANSIRT+DGGTHI+G+KASLTRTLN+L KKSK +KEKDI+LSGEHV
Sbjct: 351 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHV 410
Query: 301 REGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSKA 360
REGLTC+VSVKVPNPEFEGQTKTRLGNPEVRK+VDQS+QEYLTE+LELHPD+L+S++SK+
Sbjct: 411 REGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESIISKS 470
Query: 361 LNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQG 420
LNA+KAALAAKRARELVR KSVL+SSSLPGKLADCSS++PE EIFIVEGDSAGGSAKQG
Sbjct: 471 LNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSAKQG 530
Query: 421 RDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIII 480
RDRRFQAILPLRGKILNIER+DEAAMYKNEEIQNLILGLGLGVKGEDFKK+ LRYHKIII
Sbjct: 531 RDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHKIII 590
Query: 481 LTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKKL 540
LTDADVDGAHIRTLLLTFF+RYQRALFD G IYVGVPPL+KV RGK YCYD+ADLKK+
Sbjct: 591 LTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDADLKKI 650
Query: 541 KSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGAR 600
S+F NASYN+QRFKGLGEMMP QLWETTM+PE R+LK+L V+D AEAN+ FSSLMGAR
Sbjct: 651 TSNFPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLMGAR 710
Query: 601 VDVRKELIQNAANMIDLDQLDI 622
VDVRKELI+NAA I+L +LDI
Sbjct: 711 VDVRKELIKNAATRINLQRLDI 732
>gb|AAF02815.1| putative DNA gyrase subunit B [Arabidopsis thaliana]
gi|15228245|ref|NP_187638.1| DNA topoisomerase,
ATP-hydrolyzing, putative / DNA topoisomerase II,
putative / DNA gyrase, putative [Arabidopsis thaliana]
Length = 657
Score = 1035 bits (2676), Expect = 0.0
Identities = 512/625 (81%), Positives = 577/625 (91%), Gaps = 3/625 (0%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTG RGLHHLVYEILDNA+DEAQAGFASKIDVVLH+DDSVSI+DNGRGIPTD+HP
Sbjct: 33 MYIGSTGSRGLHHLVYEILDNAIDEAQAGFASKIDVVLHSDDSVSISDNGRGIPTDLHPA 92
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
T KS+LETVLT+LHAGGKFGG +SGYSVSGGLHGVGLSVVNALSEALEV V R+G+E+ Q
Sbjct: 93 TGKSSLETVLTVLHAGGKFGGKSSGYSVSGGLHGVGLSVVNALSEALEVIVRRDGMEFQQ 152
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKE---VFTTAIEFEYNTIAGRIRELAF 177
YSRGKPVTTL C +LP E++ QGT I+FWPDKE +FTTAI+F++NTIAGRIRELAF
Sbjct: 153 KYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEGFALFTTAIQFDHNTIAGRIRELAF 212
Query: 178 LNPKLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRKEIDGITVD 237
LNPK+TI+L+KED+DPE+ +EYFYAGGL EYV +LNTDKK +HDVL FRKEI+G TVD
Sbjct: 213 LNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEINGSTVD 272
Query: 238 IALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSG 297
++LQWC DAYSDT+LGYANSIRT+DGGTHI+G+KASLTRTLNSL KK KVIKEKDI+LSG
Sbjct: 273 VSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSG 332
Query: 298 EHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVL 357
EHVREGLTC+VSVKVPNPEFEGQTKTRLGNPEVRK+VDQS+QEYLTEYLELHPDVL+S++
Sbjct: 333 EHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESII 392
Query: 358 SKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSA 417
SK+LNA+KAALAAKRARELVR KSVL+SSSLPGKLADCSS++P + EIFIVEGDSAGGSA
Sbjct: 393 SKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSA 452
Query: 418 KQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHK 477
KQGRDRRFQAILPLRGKILNIER+DEAAMYKNEEIQNLILGLGLGVKGEDF K+ LRYHK
Sbjct: 453 KQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHK 512
Query: 478 IIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADL 537
IIILTDADVDGAHIRTLLLTFF+RYQRALFD G IYVGVPPL+KV RGKQ HYCYD+A L
Sbjct: 513 IIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAAL 572
Query: 538 KKLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLM 597
KK+ +SF NASYN+QRFKGLGEMMP QLWETTM+P+ R+LK+L V+DAAE N+VFSSLM
Sbjct: 573 KKITASFPGNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVDDAAETNMVFSSLM 632
Query: 598 GARVDVRKELIQNAANMIDLDQLDI 622
GARVDVRKELI++AA ++L+ LDI
Sbjct: 633 GARVDVRKELIKSAATRMNLENLDI 657
>emb|CAC05495.1| DNA gyrase subunit B-like protein [Arabidopsis thaliana]
Length = 760
Score = 1033 bits (2671), Expect = 0.0
Identities = 510/652 (78%), Positives = 576/652 (88%), Gaps = 30/652 (4%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTG RGLHHLVYEILDNA+DEAQAG+ASK+DVVLHAD SVS+ DNGRGIPTD+HP
Sbjct: 109 MYIGSTGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDLHPA 168
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
TKKS+LETVLT+LHAGGKFGG +SGYSVSGGLHGVGLSVVNALSEALEV+VWR+G+E+ Q
Sbjct: 169 TKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGMEHKQ 228
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKE------------------------- 155
YSRGKP+TTL C +LP E+K +GT I+FWPDKE
Sbjct: 229 NYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEGFACFPLLTTLPKPKLDLMINFPLW 288
Query: 156 -----VFTTAIEFEYNTIAGRIRELAFLNPKLTIALRKEDNDPEKVQSNEYFYAGGLAEY 210
VFTTAIEF++NTIAGRIRELAFLNPK+TI+L+KED+DPEK Q +EY +AGGL EY
Sbjct: 289 NELFSVFTTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEY 348
Query: 211 VQFLNTDKKAVHDVLSFRKEIDGITVDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGM 270
V +LNTDK +HDVL FR+EI+G TVD+ALQWC DAYSDT+LGYANSIRT+DGGTHI+G+
Sbjct: 349 VSWLNTDKNPIHDVLGFRREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGV 408
Query: 271 KASLTRTLNSLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEV 330
KASLTRTLN+L KKSK +KEKDI+LSGEHVREGLTC+VSVKVPNPEFEGQTKTRLGNPEV
Sbjct: 409 KASLTRTLNTLAKKSKTVKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEV 468
Query: 331 RKVVDQSIQEYLTEYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPG 390
RK+VDQS+QEYLTE+LELHPD+L+S++SK+LNA+KAALAAKRARELVR KSVL+SSSLPG
Sbjct: 469 RKIVDQSVQEYLTEFLELHPDILESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPG 528
Query: 391 KLADCSSSNPEDCEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNE 450
KLADCSS++PE EIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIER+DEAAMYKNE
Sbjct: 529 KLADCSSTDPEVSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNE 588
Query: 451 EIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEG 510
EIQNLILGLGLGVKGEDFKK+ LRYHKIIILTDADVDGAHIRTLLLTFF+RYQRALFD G
Sbjct: 589 EIQNLILGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAG 648
Query: 511 YIYVGVPPLYKVTRGKQVHYCYDEADLKKLKSSFAPNASYNMQRFKGLGEMMPLQLWETT 570
IYVGVPPL+KV RGK YCYD+ADLKK+ S+F NASYN+QRFKGLGEMMP QLWETT
Sbjct: 649 CIYVGVPPLFKVERGKNAQYCYDDADLKKITSNFPANASYNIQRFKGLGEMMPEQLWETT 708
Query: 571 MDPEQRLLKKLTVEDAAEANIVFSSLMGARVDVRKELIQNAANMIDLDQLDI 622
M+PE R+LK+L V+D AEAN+ FSSLMGARVDVRKELI+NAA I+L +LDI
Sbjct: 709 MNPETRILKQLVVDDIAEANMTFSSLMGARVDVRKELIKNAATRINLQRLDI 760
>dbj|BAD81163.1| putative DNA gyrase B subunit [Oryza sativa (japonica
cultivar-group)] gi|56783730|dbj|BAD81142.1| putative
DNA gyrase B subunit [Oryza sativa (japonica
cultivar-group)]
Length = 729
Score = 1023 bits (2646), Expect = 0.0
Identities = 494/622 (79%), Positives = 572/622 (91%), Gaps = 1/622 (0%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTG RGLHHLVYEILDNAVDEAQAG+A+K+DV+LH D+SVS+ DNGRGIPTD+HP
Sbjct: 109 MYIGSTGSRGLHHLVYEILDNAVDEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDIHPQ 168
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
TKKS +ETVLT++HAGGKFGG SGY+VSGGLHGVGLSVVNALSEALEVTVWR+G EY Q
Sbjct: 169 TKKSCVETVLTLMHAGGKFGGSKSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKEYRQ 228
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
YSRGK +T L L E+ RQGTRI+FWPDK +FTT ++F++NTIAGRIRELAFLNP
Sbjct: 229 NYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNP 288
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRKEIDGITVDIAL 240
+LTIAL KE++D + VQ NEY YAGGL EYV++LNTDKK++HD ++FRKE+DGITVD++L
Sbjct: 289 ELTIALTKEEDDLQ-VQHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITVDVSL 347
Query: 241 QWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEHV 300
QWC D+YSDT+LGYANSIRT+DGGTHIDG+K SLTRT+N+ KKSK +K+KDI+LSGEHV
Sbjct: 348 QWCSDSYSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHV 407
Query: 301 REGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSKA 360
REG+TC+++VKVPNPEFEGQTKTRLGNPEVR++V+QS+QE LTEYLELHPDVLDS+LSK+
Sbjct: 408 REGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKS 467
Query: 361 LNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQG 420
LNA KAALAAKRARELVR KSVL+SSSLPGKLADC+SS+PE+ EIFIVEGDSAGGSAKQG
Sbjct: 468 LNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSAKQG 527
Query: 421 RDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIII 480
RDR+FQAILPLRGKILNIERRDEAA+YKNEEIQNLI+ LGLGVKGEDF K+ALRYHKI+I
Sbjct: 528 RDRKFQAILPLRGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVI 587
Query: 481 LTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKKL 540
LTDADVDGAHIRTLLLTFF+RYQ+ALFDEG IYVGVPPLYKV RGKQ HYCYD+ADLK+L
Sbjct: 588 LTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKEL 647
Query: 541 KSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGAR 600
++F NASY++QRFKGLGEMMP QLWETTMDPE+R+LK+L VEDAAEAN+VFSSLMG R
Sbjct: 648 VNTFPTNASYHIQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTR 707
Query: 601 VDVRKELIQNAANMIDLDQLDI 622
VDVRK+LIQNAA+M++L+ LDI
Sbjct: 708 VDVRKQLIQNAASMVNLEHLDI 729
>ref|NP_912918.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 647
Score = 997 bits (2578), Expect = 0.0
Identities = 485/622 (77%), Positives = 564/622 (89%), Gaps = 4/622 (0%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTG RGLHHLVYEILDNAVDEAQAG+A+K+DV+LH D+SVS+ DNGRGIPTD+HP
Sbjct: 30 MYIGSTGSRGLHHLVYEILDNAVDEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDIHPQ 89
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
TKKS +ETVLT++HAGGKFGG SGY+VSGGLHGVGLSVVNALSEALEVTVWR+G EY Q
Sbjct: 90 TKKSCVETVLTLMHAGGKFGGSKSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKEYRQ 149
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
YSRGK +T L L E+ RQGTRI+FWPDK +FTT ++F++NTIAGRIRELAFLNP
Sbjct: 150 NYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNP 209
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRKEIDGITVDIAL 240
+LTIAL KE++D + VQ NEY YAGGL EYV++LNTDKK++HD ++FRKE+DGITVD++L
Sbjct: 210 ELTIALTKEEDDLQ-VQHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITVDVSL 268
Query: 241 QWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEHV 300
QWC D+YSDT+LGYANSIRT+DGGTHIDG+K SLTRT+N+ KKSK +K+KDI+LSGEHV
Sbjct: 269 QWCSDSYSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHV 328
Query: 301 REGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSKA 360
REG+TC+++VKVPNPEFEGQTKTRLGNPEVR++V+QS+QE LTEYLELHPDVLDS+LSK+
Sbjct: 329 REGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKS 388
Query: 361 LNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQG 420
LNA KAALAAKRARELVR KSVL+SSSLPGKLADC+SS+PE+ EIFIVEGDSAGG +
Sbjct: 389 LNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGIYLR- 447
Query: 421 RDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIII 480
+ QAILPLRGKILNIERRDEAA+YKNEEIQNLI+ LGLGVKGEDF K+ALRYHKI+I
Sbjct: 448 --KWMQAILPLRGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVI 505
Query: 481 LTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKKL 540
LTDADVDGAHIRTLLLTFF+RYQ+ALFDEG IYVGVPPLYKV RGKQ HYCYD+ADLK+L
Sbjct: 506 LTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKEL 565
Query: 541 KSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGAR 600
++F NASY++QRFKGLGEMMP QLWETTMDPE+R+LK+L VEDAAEAN+VFSSLMG R
Sbjct: 566 VNTFPTNASYHIQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTR 625
Query: 601 VDVRKELIQNAANMIDLDQLDI 622
VDVRK+LIQNAA+M++L+ LDI
Sbjct: 626 VDVRKQLIQNAASMVNLEHLDI 647
>ref|YP_172325.1| DNA gyrase B subunit [Synechococcus elongatus PCC 6301]
gi|56686583|dbj|BAD79805.1| DNA gyrase B subunit
[Synechococcus elongatus PCC 6301]
gi|25019687|gb|AAN71773.1| DNA gyrase subunit B
[Synechococcus sp. PCC 7942]
gi|45513886|ref|ZP_00165452.1| COG0187: Type IIA
topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
subunit [Synechococcus elongatus PCC 7942]
Length = 645
Score = 778 bits (2008), Expect = 0.0
Identities = 387/629 (61%), Positives = 486/629 (76%), Gaps = 15/629 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTGP+GLHHLVYE++DNAVDEA AG+ + IDV L D S + DNGRGIPTD+HP
Sbjct: 25 MYIGSTGPKGLHHLVYEVVDNAVDEALAGYCNTIDVRLLEDGSCQVTDNGRGIPTDIHPQ 84
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
T KSALETVLTILHAGGKFGG GY VSGGLHGVG+SVVNALSE +EVTVWREG + Q
Sbjct: 85 TGKSALETVLTILHAGGKFGG--GGYKVSGGLHGVGVSVVNALSEYVEVTVWREGKTHQQ 142
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
+ +G P+ L + DR+GT+++F PD +F+ EF+Y T+A R++ELA+LN
Sbjct: 143 RFEQGNPIGELQVAP---DADDRRGTQVRFKPDATIFSETTEFDYGTLASRLKELAYLNA 199
Query: 181 KLTIALRKE------DNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSF-RKEIDG 233
+ I E +++P + Y++ GG+ EYV ++NTDK+A+H + F + E DG
Sbjct: 200 GVRIDFTDERLQLTKNHEPHQ---ETYYFEGGIREYVAYMNTDKQALHSEIIFVQSEKDG 256
Query: 234 ITVDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDI 293
+ V+ ALQWC DAYSD ILG+AN+IRT+DGGTHI+G+K LTRT+N++ +K K+ D
Sbjct: 257 VQVEAALQWCVDAYSDNILGFANNIRTIDGGTHIEGLKTVLTRTMNTIARKRNKRKDADN 316
Query: 294 TLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVL 353
LSGE++REGLT +VSVKVP+PEFEGQTKT+LGN EVR +VD + E LTEYLE HP V
Sbjct: 317 NLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGETLTEYLEFHPSVA 376
Query: 354 DSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSA 413
D +L KA+ AF AA AA+RARELVR+KSVL SS+LPGKLADCSS +P + EIFIVEGDSA
Sbjct: 377 DLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPGESEIFIVEGDSA 436
Query: 414 GGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDAL 473
GGSAKQGRDRRFQAILPLRGKILNIE+ D+A +YKN EIQ LI LGLG+KGE+F L
Sbjct: 437 GGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDASQL 496
Query: 474 RYHKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYD 533
RYH+I+I+TDADVDGAHIRTLLLTFFYRYQR+L ++GYIY+ PPLYK+ RG+ +YCY+
Sbjct: 497 RYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLLEQGYIYIACPPLYKLERGRNHYYCYN 556
Query: 534 EADLKKLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVF 593
E +L++ ++F NA+Y +QRFKGLGEMMP QLWETTMDPE R +K++ +EDAAEA+ +F
Sbjct: 557 ERELQERIATFPENANYTIQRFKGLGEMMPQQLWETTMDPETRTMKRVEIEDAAEADRIF 616
Query: 594 SSLMGARVDVRKELIQNAANMIDLDQLDI 622
+ LMG RV R+E I+ + + LDI
Sbjct: 617 TILMGDRVQPRREFIETYGPQLSMAALDI 645
>gb|AAQ00840.1| DNA gyrase B subunit [Prochlorococcus marinus subsp. marinus str.
CCMP1375] gi|33241245|ref|NP_876187.1| DNA gyrase B
subunit [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 658
Score = 773 bits (1997), Expect = 0.0
Identities = 386/627 (61%), Positives = 482/627 (76%), Gaps = 7/627 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTGPRGLHHLVYE++DNAVDEA AG ++I VVL +D S SI+DNGRGIPTD+HP
Sbjct: 34 MYIGSTGPRGLHHLVYEVVDNAVDEALAGHCNEIVVVLCSDGSASISDNGRGIPTDVHPK 93
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
T KSALETVLT+LHAGGKFG + GY VSGGLHGVG+SVVNALSE +EVTV R+G + Q
Sbjct: 94 TGKSALETVLTVLHAGGKFG--SGGYKVSGGLHGVGVSVVNALSEWVEVTVRRQGHIHNQ 151
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
+ RG P+ L P K GT++ F PD ++FTT I F+Y+ ++ R+RELA+LN
Sbjct: 152 RFERGAPIGNLRSTKQPVSEKKLTGTKVNFKPDTDIFTTGIVFDYSILSSRLRELAYLNG 211
Query: 181 KLTIALRKE----DNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVH-DVLSFRKEIDGIT 235
+ I R E + EK YFY GG+ EYV ++N++K A+H +++ E +G+
Sbjct: 212 GVKIVFRDERQSVSDKEEKAYEEVYFYEGGIKEYVAYMNSEKDALHPEIIYVNSEKEGVQ 271
Query: 236 VDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITL 295
V+ ALQWC DAYSD+ILG+AN+IRTVDGGTHI+G+K LTRTLNS +K K+ D L
Sbjct: 272 VEAALQWCIDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNSFARKRGKRKDGDSNL 331
Query: 296 SGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDS 355
+GE++REGLT V+SVKVP PEFEGQTKT+LGN EVR +VD + E L +YLE +P V+D
Sbjct: 332 AGENIREGLTVVLSVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGESLAQYLEFNPSVIDL 391
Query: 356 VLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGG 415
+L KA+ AF AA AA+RARELVR+KSVL S++LPGKLADCSS +P + EI+IVEGDSAGG
Sbjct: 392 ILEKAIQAFNAAEAARRARELVRRKSVLESTTLPGKLADCSSRDPSESEIYIVEGDSAGG 451
Query: 416 SAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRY 475
SAKQGRDRRFQAILPLRGKILNIE+ D+A +YKN EIQ LI GLGLG+KGEDF LRY
Sbjct: 452 SAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITGLGLGIKGEDFSLKNLRY 511
Query: 476 HKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEA 535
H+++I+TDADVDGAHIRTLLLTFFYRYQ+ L + GY+Y+ PPLYKV RGK YCY+E
Sbjct: 512 HRVVIMTDADVDGAHIRTLLLTFFYRYQKELVEGGYVYIACPPLYKVERGKNHTYCYNEG 571
Query: 536 DLKKLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSS 595
DL+K +SF A+Y +QRFKGLGEMMP QLWETTMDP R++K++ +EDA EA+ +F+
Sbjct: 572 DLQKTITSFGEKANYTIQRFKGLGEMMPKQLWETTMDPSTRMMKRVEIEDALEADRIFTI 631
Query: 596 LMGARVDVRKELIQNAANMIDLDQLDI 622
LMG +V R+E I+ + +D+ LDI
Sbjct: 632 LMGDKVAPRREFIETHSVELDMASLDI 658
>dbj|BAB76964.1| DNA gyrase B subunit [Nostoc sp. PCC 7120]
gi|17232757|ref|NP_489305.1| DNA gyrase B subunit
[Nostoc sp. PCC 7120] gi|25292833|pir||AI2463 DNA gyrase
B chain [imported] - Nostoc sp. (strain PCC 7120)
Length = 645
Score = 773 bits (1995), Expect = 0.0
Identities = 384/628 (61%), Positives = 489/628 (77%), Gaps = 13/628 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTGPRGLHHLVYE++DN++DEA AG+ + I+V ++AD SV++ D+GRGIP D H
Sbjct: 25 MYIGSTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVEINADGSVAVTDDGRGIPIDTHSR 84
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
T KSALETV+T+LHAGGKFGG GY VSGGLHGVG+SVVNALSE +EVTVWR+ +TQ
Sbjct: 85 TGKSALETVMTVLHAGGKFGG--GGYKVSGGLHGVGISVVNALSEVVEVTVWRDKKVHTQ 142
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
Y RG PVT L + P++ R GT + F PD ++FT +IEF+Y T++GR+RELA+LN
Sbjct: 143 RYERGVPVTEL--ITNPYKEA-RTGTSVTFKPDTQIFTNSIEFDYITLSGRLRELAYLNA 199
Query: 181 KLTIA-----LRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHD-VLSFRKEIDGI 234
+ I L +D KV+S Y Y GG+ EY+ ++N DK+ +H+ ++ + E + +
Sbjct: 200 GVKITFTDNRLELLKSDTPKVES--YEYKGGIKEYIAYMNRDKQPLHEEIIYVQGERNNV 257
Query: 235 TVDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDIT 294
++++LQWC DAY+D +LG+AN+IRT+DGGTH++G+KA LTRTLN++ +K IKE +
Sbjct: 258 QIEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRTLNTIARKRNKIKEHEPN 317
Query: 295 LSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLD 354
LSGEHVREGLT V+SVKVP+PEFEGQTKT+LGN EVR +VD + E LTEYLE HP + D
Sbjct: 318 LSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPGIAD 377
Query: 355 SVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAG 414
S+L KA+ AFKAA AA+ ARELVR+KSVL SS LPGKLADCSS +P + EI+IVEGDSAG
Sbjct: 378 SILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSSRDPSESEIYIVEGDSAG 437
Query: 415 GSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALR 474
GSAKQGRDRR QAILPLRGKILNIE+ D++ +YKN EIQ LI LGLGVKGE+F LR
Sbjct: 438 GSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQALITALGLGVKGEEFDSTQLR 497
Query: 475 YHKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDE 534
YH+III+TDADVDGAHIRTL+LTFFYRYQRAL ++G+IY+ PPLYKV RG+ YCY E
Sbjct: 498 YHRIIIMTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIACPPLYKVERGRNYEYCYSE 557
Query: 535 ADLKKLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFS 594
+L++ + F NA+Y +QRFKGLGEMMP QLW TTM+PE R LK++ +EDAAEA+ +F+
Sbjct: 558 RELQQAIAKFPANANYTIQRFKGLGEMMPEQLWTTTMNPETRTLKRVEIEDAAEADRIFT 617
Query: 595 SLMGARVDVRKELIQNAANMIDLDQLDI 622
LMG RV R+E I+ + ++L LDI
Sbjct: 618 ILMGDRVAPRREFIETYGSKLNLTDLDI 645
>ref|ZP_00158090.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
IV), B subunit [Anabaena variabilis ATCC 29413]
Length = 645
Score = 772 bits (1994), Expect = 0.0
Identities = 383/628 (60%), Positives = 488/628 (76%), Gaps = 13/628 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTGPRGLHHLVYE++DN++DEA AG+ + I+V ++AD SV++ D+GRGIPTD H
Sbjct: 25 MYIGSTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVDINADGSVTVTDDGRGIPTDTHSR 84
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
T KSALETV+T+LHAGGKFGG GY VSGGLHGVG+SVVNALSE +EVTVWR+ + Q
Sbjct: 85 TGKSALETVMTVLHAGGKFGG--GGYKVSGGLHGVGISVVNALSEVVEVTVWRDKKVHIQ 142
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
Y RG PVT L + P++ R GT + F PD ++FT +IEF+Y T++ R+RELA+LN
Sbjct: 143 RYERGIPVTEL--IAKPYKEA-RTGTSVSFKPDSQIFTNSIEFDYITLSSRLRELAYLNA 199
Query: 181 KLTIA-----LRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHD-VLSFRKEIDGI 234
+ I L +D KV+S Y Y GG+ EY+ ++N DK+ +H+ ++ + E + +
Sbjct: 200 GVKITFTDNRLELLKSDTPKVES--YEYKGGIKEYIAYMNRDKQPLHEEIIYVQGERNNV 257
Query: 235 TVDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDIT 294
++++LQWC DAY+D +LG+AN+IRT+DGGTH++G+KA LTRTLN++ +K IKE +
Sbjct: 258 QIEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRTLNTIARKRNKIKENEAN 317
Query: 295 LSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLD 354
LSGEHVREGLT V+SVKVP+PEFEGQTKT+LGN EVR +VD + E LTEYLE HP + D
Sbjct: 318 LSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPGIAD 377
Query: 355 SVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAG 414
++L KA+ AFKAA AA+ ARELVR+KSVL SS LPGKLADCSS +P + EI+IVEGDSAG
Sbjct: 378 AILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSSRDPSESEIYIVEGDSAG 437
Query: 415 GSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALR 474
GSAKQGRDRR QAILPLRGKILNIE+ D++ +YKN EIQ LI LGLGVKGE+F LR
Sbjct: 438 GSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQALITALGLGVKGEEFDSTQLR 497
Query: 475 YHKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDE 534
YH+III+TDADVDGAHIRTL+LTFFYRYQRAL ++G+IY+ PPLYKV RG+ YCY E
Sbjct: 498 YHRIIIMTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIACPPLYKVERGRNYEYCYSE 557
Query: 535 ADLKKLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFS 594
DL++ + F NA+Y +QRFKGLGEMMP QLW TTM+PE R LK++ +EDAAEA+ +F+
Sbjct: 558 RDLQQAIAKFPANANYTIQRFKGLGEMMPEQLWTTTMNPETRTLKRVEIEDAAEADRIFT 617
Query: 595 SLMGARVDVRKELIQNAANMIDLDQLDI 622
LMG RV R+E I+ + ++L LDI
Sbjct: 618 ILMGDRVAPRREFIETYGSKLNLTDLDI 645
>ref|ZP_00513575.1| DNA gyrase, B subunit [Crocosphaera watsonii WH 8501]
gi|67857539|gb|EAM52778.1| DNA gyrase, B subunit
[Crocosphaera watsonii WH 8501]
Length = 642
Score = 765 bits (1976), Expect = 0.0
Identities = 376/623 (60%), Positives = 485/623 (77%), Gaps = 8/623 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIG+TGPRGLHHLVYE++DN++DEA AG+ + I++ ++AD S+++ DNGRGIPTD+HPT
Sbjct: 27 MYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEIDINADGSITVTDNGRGIPTDVHPT 86
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
T KSALETV+T+LHAGGKFGG GY VSGGLHGVG+SVVNALSE + V VWR+ +TQ
Sbjct: 87 TGKSALETVMTVLHAGGKFGG--GGYKVSGGLHGVGISVVNALSEWVVVNVWRDNNIHTQ 144
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
Y RG P+ +L+ + K GT + F PD ++F+ IEF+Y+T+AGR++ELA+LN
Sbjct: 145 RYERGIPLGSLDTKP---DKKHSTGTSVSFLPDIQIFSGGIEFDYSTLAGRLKELAYLNA 201
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVH-DVLSFRKEIDGITVDIA 239
+ I D+ E+ + Y Y GG+ EYV ++ DK +H D++ E +G V++A
Sbjct: 202 GVKITFT--DHRKEEPYNETYCYEGGIKEYVTYMCRDKDPLHQDIIYVSGEKNGTQVEVA 259
Query: 240 LQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEH 299
L WC DAYSD +LG+AN+IRT+DGGTH++G+K LTRT+N++ +K +KE D L GE+
Sbjct: 260 LLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNNVARKRNKLKENDANLGGEN 319
Query: 300 VREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSK 359
VREGLT V+SVKVP PEFEGQTKT+LGN EVR +VD + E LTEYLE +P V D+++ K
Sbjct: 320 VREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFNPQVADNIIEK 379
Query: 360 ALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQ 419
A+ AFKAA AA+RARELVR+KSVL SS LPGKLADCSS +PE+ EIF+VEGDSAGGSAKQ
Sbjct: 380 AVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSSRDPEESEIFLVEGDSAGGSAKQ 439
Query: 420 GRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKII 479
GRDRRFQAILPLRGKI+NIE+ D+A +YKN EIQ+LI LGLG+KGE+F + LRYH+I+
Sbjct: 440 GRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDSEQLRYHRIV 499
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKK 539
I+TDADVDGAHIRTLLLTFFYRYQR+L D+GY+Y+ PPLYKV RG+ YCY+E L++
Sbjct: 500 IMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYIACPPLYKVERGRNHMYCYNERQLQE 559
Query: 540 LKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGA 599
+S NA+Y +QRFKGLGEMMP QLWETTM+PE R +K++ +EDAAEA+ +F+ LMG
Sbjct: 560 HINSLPNNANYTIQRFKGLGEMMPTQLWETTMNPETRSMKQVEIEDAAEADRIFTILMGD 619
Query: 600 RVDVRKELIQNAANMIDLDQLDI 622
RV R+E I+ ++L LDI
Sbjct: 620 RVAPRREFIETYGPKLNLTDLDI 642
>emb|CAE06610.1| DNA gyrase subunit B [Synechococcus sp. WH 8102]
gi|33864631|ref|NP_896190.1| DNA gyrase subunit B
[Synechococcus sp. WH 8102]
Length = 655
Score = 759 bits (1959), Expect = 0.0
Identities = 384/627 (61%), Positives = 473/627 (75%), Gaps = 7/627 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIG+TGPRGLHHLVYE++DN+VDEA AG +I V L D S SI+DNGRGIPTD+HP
Sbjct: 31 MYIGTTGPRGLHHLVYEVVDNSVDEALAGHCDRILVTLGEDGSASISDNGRGIPTDVHPR 90
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
T KSALETVLT+LHAGGKFG GY VSGGLHGVG+SVVNALSE ++VTV R+G + Q
Sbjct: 91 TGKSALETVLTVLHAGGKFGA--GGYKVSGGLHGVGVSVVNALSEWVQVTVRRQGQVHRQ 148
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
+ RG + +L P GT + F PD E+FT I F+Y T++ R+RELA+LN
Sbjct: 149 RFERGAAIGSLASEDQPASEAGETGTTVCFKPDIEIFTGGIVFDYATLSARLRELAYLNG 208
Query: 181 KLTIALRKED----NDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVH-DVLSFRKEIDGIT 235
+ I R E N+ + YFY GG+ EYV ++NT+K A+H D++ E DG+
Sbjct: 209 GVRIVFRDERESARNEVGEAHEETYFYEGGIKEYVAYMNTEKDALHPDIIYVNSEKDGVQ 268
Query: 236 VDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITL 295
V+ ALQWC DAYSD+ILG+AN+IRTVDGGTHI+G+K LTRTLN+ KK KE D L
Sbjct: 269 VEAALQWCSDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNAFAKKLGKRKESDSNL 328
Query: 296 SGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDS 355
+GE++REGLT V+SVKVP PEFEGQTKT+LGN EVR +VD + E L+++LE +P V+
Sbjct: 329 AGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDNLVGEGLSQFLEFNPSVIGL 388
Query: 356 VLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGG 415
+L KA+ AF AA AA+RARELVR+KSVL SS+LPGKLADCSS +P + EI+IVEGDSAGG
Sbjct: 389 ILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDSAGG 448
Query: 416 SAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRY 475
SAKQGRDRRFQAILPLRGKILNIE+ D+A +YKN EIQ LI LGLG+KGEDF LRY
Sbjct: 449 SAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEDFDVKNLRY 508
Query: 476 HKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEA 535
H+++I+TDADVDGAHIRTLLLTFFYRYQ+AL + GYIY+ PPLYKV RGK YCY+E
Sbjct: 509 HRVVIMTDADVDGAHIRTLLLTFFYRYQKALVEGGYIYIACPPLYKVERGKNHTYCYNEG 568
Query: 536 DLKKLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSS 595
DL+K SF A+Y +QRFKGLGEMMP QLWETTMDP R +K++ +EDA EA+ +F+
Sbjct: 569 DLQKTLQSFGEKANYTIQRFKGLGEMMPKQLWETTMDPTTRTMKRVEIEDALEADRIFTI 628
Query: 596 LMGARVDVRKELIQNAANMIDLDQLDI 622
LMG +V R+E I+ + +D+ LDI
Sbjct: 629 LMGDKVAPRREFIETHSAELDMTALDI 655
>ref|NP_681436.1| DNA gyrase subunit B [Thermosynechococcus elongatus BP-1]
gi|22294368|dbj|BAC08198.1| DNA gyrase subunit B
[Thermosynechococcus elongatus BP-1]
Length = 640
Score = 758 bits (1956), Expect = 0.0
Identities = 374/623 (60%), Positives = 484/623 (77%), Gaps = 8/623 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTGP+GLHHLVYE++DN+VDEA AG+ S I V ++AD SV++ D+GRGIPTD+HP
Sbjct: 25 MYIGSTGPKGLHHLVYEVVDNSVDEALAGYCSTILVQINADGSVTVTDDGRGIPTDIHPD 84
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
T S +ETV+T+LHAGGKFG + GY VSGGLHGVG+SVVNALSE LEVTVWR G + Q
Sbjct: 85 TGVSGVETVMTVLHAGGKFG--DGGYKVSGGLHGVGVSVVNALSEWLEVTVWRNGFVHHQ 142
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
Y RG P T L + ++R+GT + F+PD+++FT IEF+ + R+RELA+LN
Sbjct: 143 RYERGVPTTPLEKTP---DTEERRGTSVTFFPDRQIFTETIEFDAKVLMTRLRELAYLNA 199
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVH-DVLSFRKEIDGITVDIA 239
+ I + P S Y Y GG+ EYV+++ +K+ +H +++ + E D + V+ A
Sbjct: 200 GIRIEFKDLRVTPPL--SETYCYEGGIREYVRYMVQEKEPLHPEIIYIQGEKDDVQVEAA 257
Query: 240 LQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEH 299
LQWC DAYS+ +LG+AN+IRT+DGGTH++G+KA LTRTLN+LG+K +KE + L+GE+
Sbjct: 258 LQWCADAYSENLLGFANNIRTIDGGTHMEGLKAVLTRTLNALGRKRNKLKENNANLAGEN 317
Query: 300 VREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSK 359
+REGLT ++SVKVPNPEFEGQTKT+LGN EVR +VD + LTEYL+ HP+V D++L K
Sbjct: 318 IREGLTAIISVKVPNPEFEGQTKTKLGNTEVRGIVDAIVGAALTEYLDFHPNVTDTILEK 377
Query: 360 ALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQ 419
A+ AF AA AA+RARE+VR+KSVL SS+LPGKLADCSS +P EIFIVEGDSAGGSAKQ
Sbjct: 378 AIQAFNAAEAARRAREMVRRKSVLESSTLPGKLADCSSRDPAVSEIFIVEGDSAGGSAKQ 437
Query: 420 GRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKII 479
GRDRRFQAILPLRGKILNIE+ D+A +YKN E+Q+LI LGLGVKGE+F LRYHKII
Sbjct: 438 GRDRRFQAILPLRGKILNIEKTDDAKIYKNNEVQSLITALGLGVKGEEFDPAKLRYHKII 497
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKK 539
++TDADVDG+HIRTLLLTFFYRYQ+ L ++G++Y+ PPLYKV RG+Q YCY + +L++
Sbjct: 498 LMTDADVDGSHIRTLLLTFFYRYQQELVNQGFVYIACPPLYKVERGRQHFYCYSDRELQQ 557
Query: 540 LKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGA 599
+SF NA+Y +QRFKGLGEMMP QLWETTM+PE R+LK++ +EDAAEA+ +F+ LMG
Sbjct: 558 QIASFPENANYTIQRFKGLGEMMPEQLWETTMNPETRILKRVEIEDAAEADRIFTILMGD 617
Query: 600 RVDVRKELIQNAANMIDLDQLDI 622
RV R+E I+ + L+ LDI
Sbjct: 618 RVAPRREFIETYGPQLALENLDI 640
>emb|CAE20296.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9313]
gi|33862394|ref|NP_893954.1| DNA gyrase, subunit B
[Prochlorococcus marinus str. MIT 9313]
Length = 655
Score = 754 bits (1948), Expect = 0.0
Identities = 383/627 (61%), Positives = 476/627 (75%), Gaps = 7/627 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTGPRGLHHLV+E++DN+VDEA AG +I VVL D S SI+DNGRGIPTD+H
Sbjct: 31 MYIGSTGPRGLHHLVFEVVDNSVDEALAGHCDEILVVLGPDGSASISDNGRGIPTDVHSR 90
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
T KSALETVLT+LHAGGKFG + GY VSGGLHGVG+SVVNALSE +EVTV R+G + Q
Sbjct: 91 TGKSALETVLTVLHAGGKFG--SGGYKVSGGLHGVGVSVVNALSEWVEVTVRRQGQVHRQ 148
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
+ RG + +L P K R GT + F PD+E+FT I F+Y T++ R+RELA+LN
Sbjct: 149 RFERGTAIGSLRSEAQPASEKGRTGTSVCFKPDEEIFTVGIVFDYATLSTRLRELAYLNG 208
Query: 181 KLTIALRKEDN---DPEKVQSNE-YFYAGGLAEYVQFLNTDKKAVH-DVLSFRKEIDGIT 235
+ I R E D E E YFY GG+ EYV ++N +K A+H +++ E D +
Sbjct: 209 GVRIVFRDERQPVLDAEGAPHEEVYFYEGGIKEYVTYMNAEKDALHPEIIYVNSEKDNVQ 268
Query: 236 VDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITL 295
V+ ALQWC DAYSD+ILG+AN+IRTVDGGTHI+G+K LTRTLN+ +K KE D L
Sbjct: 269 VEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTLNTFARKRGKRKEADSNL 328
Query: 296 SGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDS 355
+GE++REGLT V+SVKVP+PEFEGQTKT+LGN EVR +VD + E L++YLE +P V+D
Sbjct: 329 AGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEALSQYLEFNPAVIDL 388
Query: 356 VLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGG 415
+L KA+ AF AA AA+RARELVR+KSVL SS+LPGKLADCSS +P + EI+IVEGDSAGG
Sbjct: 389 ILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDSAGG 448
Query: 416 SAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRY 475
SAKQGRDRRFQAILPLRGKILNIE+ D+A +YKN EIQ LI LGLG+KGE+F LRY
Sbjct: 449 SAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDSKNLRY 508
Query: 476 HKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEA 535
H+++I+TDADVDGAHIRTL+LTFFYRYQ+ L + GYIY+ PPLYKV RGK YCY+E
Sbjct: 509 HRVVIMTDADVDGAHIRTLILTFFYRYQKELVEGGYIYIACPPLYKVERGKNHTYCYNEV 568
Query: 536 DLKKLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSS 595
DL+ S F A+Y +QRFKGLGEMMP QLWETTMDP R++K++ V+DA EA+ +F+
Sbjct: 569 DLQTTLSGFPEKANYTIQRFKGLGEMMPKQLWETTMDPSARMMKRVEVQDALEADRIFTI 628
Query: 596 LMGARVDVRKELIQNAANMIDLDQLDI 622
LMG +V R+E I+ + +D+ LDI
Sbjct: 629 LMGDKVAPRREFIETHSAELDMAALDI 655
>ref|NP_893751.1| DNA gyrase, subunit B [Prochlorococcus marinus subsp. pastoris str.
CCMP1986] gi|33634408|emb|CAE20093.1| DNA gyrase,
subunit B [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
Length = 655
Score = 739 bits (1909), Expect = 0.0
Identities = 373/625 (59%), Positives = 472/625 (74%), Gaps = 6/625 (0%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTGPRGLHHLVYE++DN+VDEA AG I++VL D S I+DNGRGIPTD+HP
Sbjct: 34 MYIGSTGPRGLHHLVYEVVDNSVDEALAGHCDHIEIVLKEDGSALISDNGRGIPTDIHPR 93
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
T KSALETVLT+LHAGGKFG + GY VSGGLHGVG+SVVNALSE + VTV R+G E+ Q
Sbjct: 94 TGKSALETVLTVLHAGGKFG--SGGYKVSGGLHGVGISVVNALSEWVHVTVSRDGYEFNQ 151
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
+ +G L + R+GT I F PD +FT I+F+Y ++ R+RELA+LN
Sbjct: 152 RFEKGIAKGELKSQKQQ-KKPFRKGTTICFKPDTSIFTDGIKFDYALLSSRLRELAYLNG 210
Query: 181 KLTIALRKEDNDPEKVQSNE--YFYAGGLAEYVQFLNTDKKAVH-DVLSFRKEIDGITVD 237
+ I R E + E Y Y GG+ EYV+++N +K+++H +V+ + D + V+
Sbjct: 211 GVKIIFRDERQNLSDGSFKEEIYLYDGGIKEYVEYINKEKESIHSEVIYVDSQKDNVYVE 270
Query: 238 IALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSG 297
ALQWC D YSD ILG+AN+IRT+DGGTHIDG+K LTRT N++ KK KE D LSG
Sbjct: 271 AALQWCSDVYSDNILGFANNIRTIDGGTHIDGLKTVLTRTFNAIAKKRGKRKEVDKNLSG 330
Query: 298 EHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVL 357
E++REGLT V+SVKVP PEFEGQTKT+LGN EVR +VD I E L +Y+E +P+V D +L
Sbjct: 331 ENIREGLTVVLSVKVPEPEFEGQTKTKLGNTEVRGIVDSLIGESLIKYMEFNPNVFDLIL 390
Query: 358 SKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSA 417
KA+ +F AA AAKRAR+LVR+KSVL SS+LPGKLADCSS +P EI+IVEGDSAGGSA
Sbjct: 391 EKAIQSFNAAEAAKRARDLVRRKSVLESSTLPGKLADCSSRDPSGAEIYIVEGDSAGGSA 450
Query: 418 KQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHK 477
KQGRDRRFQAILPLRGKILNIE+ D+A +YKN EIQ+LI LGLG+KGE+F ++LRYH+
Sbjct: 451 KQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLGIKGEEFNVNSLRYHR 510
Query: 478 IIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADL 537
++I+TDADVDGAHIRTLLLTFFYRYQR L ++G+IY+ PPLYKV RGK YCY+E L
Sbjct: 511 VVIMTDADVDGAHIRTLLLTFFYRYQRDLVEKGFIYIACPPLYKVERGKNHKYCYNENQL 570
Query: 538 KKLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLM 597
K+ F A+YN+QRFKGLGEMMP QLW+TTM+P+ R++K++ +EDA EA+ +F+ LM
Sbjct: 571 KQTIEDFGEKANYNIQRFKGLGEMMPKQLWDTTMNPQTRMMKRVEIEDALEADRIFNILM 630
Query: 598 GARVDVRKELIQNAANMIDLDQLDI 622
G +V R+E I+ + +D+ LDI
Sbjct: 631 GDKVAPRREFIETHSANLDMATLDI 655
>ref|NP_925452.1| DNA gyrase subunit B [Gloeobacter violaceus PCC 7421]
gi|35213074|dbj|BAC90447.1| DNA gyrase subunit B
[Gloeobacter violaceus PCC 7421]
Length = 644
Score = 732 bits (1890), Expect = 0.0
Identities = 369/627 (58%), Positives = 465/627 (73%), Gaps = 12/627 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTGPRGLHHLVYEI+DN+VDEA AG I + L AD S +I D+GRGIPTD HP
Sbjct: 25 MYIGSTGPRGLHHLVYEIVDNSVDEALAGHCKHIAISLGADGSATITDDGRGIPTDTHPR 84
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
T KS +ETVLT+L AGGKFGG GY VSGGLHGVG +VVNALS L T+WREG +Y Q
Sbjct: 85 TGKSTIETVLTVLGAGGKFGG--GGYKVSGGLHGVGAAVVNALSTILTATIWREGKQYIQ 142
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
+ RG P L + +++ R+GT I F PD E+FTT ++F+++T+ R RELAFLN
Sbjct: 143 RFHRGIPEGGL---AVSSDSQKRRGTMISFLPDPEIFTTGVDFDFDTLLSRFRELAFLNA 199
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVH-DVLSFRKEIDGITVDIA 239
+ R D E ++ Y Y GG+ EYV+++ +K A+H D++ +E DG++V+ A
Sbjct: 200 G--VEFRFSDLRGETERTESYIYEGGIREYVKYMTREKAALHPDIIFINQERDGVSVECA 257
Query: 240 LQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEH 299
LQW D Y+D +LG+AN+IRT+DGGTH++G+KA LTRT NS +K+ +K+ D L+GEH
Sbjct: 258 LQWSTDVYNDNVLGFANNIRTIDGGTHLEGLKAVLTRTFNSFARKANKLKDGDKNLTGEH 317
Query: 300 VREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSK 359
VREGLT V+SVKVPNPEFEGQTKT+LGNPEVR +VD I E LTEYLE HPDV+ S+L K
Sbjct: 318 VREGLTAVLSVKVPNPEFEGQTKTKLGNPEVRGIVDGVISEKLTEYLEFHPDVVASILEK 377
Query: 360 ALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQ 419
AL + +A AA++AR+LVR+KS L SS+LPGKLADC S +P + E+F+VEGDSAGGSAKQ
Sbjct: 378 ALQSMQAEEAARKARDLVRRKSALESSTLPGKLADCQSRDPAESEVFLVEGDSAGGSAKQ 437
Query: 420 GRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKII 479
GRDRRFQAILPLRGKILNIER D+ +Y N EIQ +I GLGLG+K E+F LRYH+II
Sbjct: 438 GRDRRFQAILPLRGKILNIERADDRKIYGNNEIQAMITGLGLGLKTEEFDVGRLRYHRII 497
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVT----RGKQVHYCYDEA 535
I+TDADVDGAHIRTLLLTFFYRY+R L ++GYIY+ PPLYK++ R V YCY E
Sbjct: 498 IMTDADVDGAHIRTLLLTFFYRYKRDLVEQGYIYIAQPPLYKISIGGGRNIDVRYCYSEQ 557
Query: 536 DLKKLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSS 595
+ + + N Y +QRFKGLGEM QLWETTM+PE R L+++T+EDAAEA+ VF+
Sbjct: 558 EKEAILRGLRENQKYELQRFKGLGEMQADQLWETTMNPETRTLRQVTIEDAAEADRVFNI 617
Query: 596 LMGARVDVRKELIQNAANMIDLDQLDI 622
LMG RV+ R+E I+ + + LDI
Sbjct: 618 LMGDRVEPRREFIETYGPRLQMADLDI 644
>dbj|BAB86972.1| DNA gyrase subunit B [Plectonema boryanum]
Length = 546
Score = 684 bits (1765), Expect = 0.0
Identities = 338/555 (60%), Positives = 434/555 (77%), Gaps = 12/555 (2%)
Query: 10 GLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPTTKKSALETV 69
GLHHLVYE++DN+VDEA AG+ ID+ ++AD SV++ D+GRGIPT +HP T KSALETV
Sbjct: 1 GLHHLVYEVVDNSVDEALAGYCKAIDISINADGSVTVTDDGRGIPTGIHPKTGKSALETV 60
Query: 70 LTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQTYSRGKPVT 129
+TILHAGGKFGG GY VSGGLHGVG+SVVNALSE +EVTVWRE + Q + RG +
Sbjct: 61 MTILHAGGKFGG--GGYKVSGGLHGVGISVVNALSEWVEVTVWREKKVHLQRFERGIAMG 118
Query: 130 TLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP--KLTIALR 187
L P + R GT + F PD +FT +F+Y T++GR+RELA+LN ++ A
Sbjct: 119 ELQVEPYP---QARTGTSVTFLPDASIFTETTKFDYTTLSGRLRELAYLNGGVRIKFADH 175
Query: 188 KEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRK-EIDGITVDIALQWCEDA 246
+E ++ E V YFY GG+ EY+ ++N +K+ +H+ + F E +GI V++ALQWC DA
Sbjct: 176 REGSEREDV----YFYEGGIREYISYMNREKQPLHEEVIFVSGERNGIQVEVALQWCSDA 231
Query: 247 YSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEHVREGLTC 306
Y+D I+G+AN+IRTVDGGTH++G+KA LTRTLN++ +K IKE + L+GE++REGLT
Sbjct: 232 YNDNIIGFANNIRTVDGGTHLEGLKAVLTRTLNTIARKRNKIKENESNLAGENIREGLTA 291
Query: 307 VVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSKALNAFKA 366
V+SVKVP+PEFEGQTKT+LGN EVR +VD + E LTEYLE P+V D+++ KA+ AFKA
Sbjct: 292 VISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPNVSDAIIEKAVQAFKA 351
Query: 367 ALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQGRDRRFQ 426
A AA+ ARE+VR+KSVL SS+LPGKLADC+S +P + EI+IVEGDSAGGSAKQGRDRRFQ
Sbjct: 352 AEAARHAREMVRRKSVLESSTLPGKLADCASRDPSESEIYIVEGDSAGGSAKQGRDRRFQ 411
Query: 427 AILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADV 486
AILPLRGKILNIE+ D++ +YKN EIQ LI LGLG+KGE+F LRYH+III+TDADV
Sbjct: 412 AILPLRGKILNIEKTDDSKIYKNTEIQALITALGLGIKGEEFDVSQLRYHRIIIMTDADV 471
Query: 487 DGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKKLKSSFAP 546
DGAHIRTLLLTFFYRYQR + D+GY+Y+ PPL+KV RG+ +YCY E +L++ ++F
Sbjct: 472 DGAHIRTLLLTFFYRYQRMMVDQGYVYIACPPLFKVERGRNHYYCYSERELQERLATFPD 531
Query: 547 NASYNMQRFKGLGEM 561
NASYN+QRFKGLGEM
Sbjct: 532 NASYNIQRFKGLGEM 546
>ref|NP_850762.1| DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase
II, putative / DNA gyrase, putative [Arabidopsis
thaliana]
Length = 519
Score = 683 bits (1763), Expect = 0.0
Identities = 325/401 (81%), Positives = 375/401 (93%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTG RGLHHLVYEILDNA+DEAQAG+ASK+DVVLHAD SVS+ DNGRGIPTD+HP
Sbjct: 111 MYIGSTGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDLHPA 170
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
TKKS+LETVLT+LHAGGKFGG +SGYSVSGGLHGVGLSVVNALSEALEV+VWR+G+E+ Q
Sbjct: 171 TKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGMEHKQ 230
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
YSRGKP+TTL C +LP E+K +GT I+FWPDKEVFTTAIEF++NTIAGRIRELAFLNP
Sbjct: 231 NYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAFLNP 290
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRKEIDGITVDIAL 240
K+TI+L+KED+DPEK Q +EY +AGGL EYV +LNTDK +HDVL FR+EI+G TVD+AL
Sbjct: 291 KVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGATVDVAL 350
Query: 241 QWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEHV 300
QWC DAYSDT+LGYANSIRT+DGGTHI+G+KASLTRTLN+L KKSK +KEKDI+LSGEHV
Sbjct: 351 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHV 410
Query: 301 REGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSKA 360
REGLTC+VSVKVPNPEFEGQTKTRLGNPEVRK+VDQS+QEYLTE+LELHPD+L+S++SK+
Sbjct: 411 REGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESIISKS 470
Query: 361 LNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPE 401
LNA+KAALAAKRARELVR KSVL+SSSLPGKLADCSS++PE
Sbjct: 471 LNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPE 511
>dbj|BAB86974.1| DNA gyrase subunit B [Synechococcus sp.]
Length = 545
Score = 680 bits (1755), Expect = 0.0
Identities = 339/553 (61%), Positives = 428/553 (77%), Gaps = 15/553 (2%)
Query: 18 ILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPTTKKSALETVLTILHAGG 77
++DNAVD+A AG+ + IDV L D S + DNGRGIPTD+HP T KSALETVLTILHAGG
Sbjct: 1 VVDNAVDKALAGYCNTIDVRLLKDGSCQVTDNGRGIPTDIHPQTGKSALETVLTILHAGG 60
Query: 78 KFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQTYSRGKPVTTLNCVMLP 137
KFGG GY VSGGLHGVG+SVVNALSE +EVTVWREG + Q + +G P+ L
Sbjct: 61 KFGG--GGYKVSGGLHGVGVSVVNALSEYVEVTVWREGKTHQQRFEQGNPIGELQVAP-- 116
Query: 138 FENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNPKLTIALRKE------DN 191
+ DR+GT+++F PD +F+ EF+Y T+A R++ELA+LN + I E ++
Sbjct: 117 -DADDRRGTQVRFKPDATIFSETTEFDYGTLASRLKELAYLNAGVRIDFTDERLQLTKNH 175
Query: 192 DPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSF-RKEIDGITVDIALQWCEDAYSDT 250
+P + Y++ GG+ EYV ++NTDK+A+H + F + E DG+ V+ ALQWC DAYSD
Sbjct: 176 EPHQ---ETYYFEGGIREYVAYMNTDKQALHSEIIFVQSEKDGVQVEAALQWCVDAYSDN 232
Query: 251 ILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEHVREGLTCVVSV 310
ILG+AN+IRT+DGGTHI+G+K LTRT+N++ +K K+ D LSGE++REGLT +VSV
Sbjct: 233 ILGFANNIRTIDGGTHIEGLKTVLTRTMNTIARKRNKRKDADNNLSGENIREGLTAIVSV 292
Query: 311 KVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSKALNAFKAALAA 370
KVP+PEFEGQTKT+LGN EVR +VD + E LTEYLE HP V D +L KA+ AF AA AA
Sbjct: 293 KVPDPEFEGQTKTKLGNTEVRGIVDTLVGETLTEYLEFHPSVADLILEKAIQAFNAAEAA 352
Query: 371 KRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQGRDRRFQAILP 430
+RARELVR+KSVL SS+LPGKLADCSS +P + EIFIVEGDSAGGSAKQGRDRRFQAILP
Sbjct: 353 RRARELVRRKSVLESSTLPGKLADCSSRDPGESEIFIVEGDSAGGSAKQGRDRRFQAILP 412
Query: 431 LRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAH 490
LRGKILNIE+ D+A +YKN EIQ LI LGLG+KGE+F LRYH+I+I+TDADVDGAH
Sbjct: 413 LRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDASQLRYHRIVIMTDADVDGAH 472
Query: 491 IRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKKLKSSFAPNASY 550
IRTLLLTFFYRYQR+L ++GY+Y+ PPLYK+ RG+ +YCY+E +L++ ++F NA+Y
Sbjct: 473 IRTLLLTFFYRYQRSLLEQGYMYIACPPLYKLERGRNHYYCYNERELQERIATFPENANY 532
Query: 551 NMQRFKGLGEMMP 563
+QRFKGLGEMMP
Sbjct: 533 TIQRFKGLGEMMP 545
>gb|AAK39952.1| DNA gyrase subunit B [Guillardia theta] gi|25292791|pir||E90095 DNA
gyrase subunit B [imported] - Guillardia theta
nucleomorph gi|13812265|ref|NP_113336.1| DNA gyrase
subunit B [Guillardia theta]
Length = 684
Score = 647 bits (1668), Expect = 0.0
Identities = 329/629 (52%), Positives = 443/629 (70%), Gaps = 15/629 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
++IGSTG +G HHLVYEI+DN+VDE+ AGF K+DV++++D SV+I DNGRGIPTD+HP
Sbjct: 64 VFIGSTGLKGFHHLVYEIVDNSVDESMAGFCEKVDVIINSDKSVTIRDNGRGIPTDLHPI 123
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
T K+ALETVLTILHAGGKFGG GY VSGGLHGVG+SVVN LSE L + R +
Sbjct: 124 TNKTALETVLTILHAGGKFGG--GGYKVSGGLHGVGVSVVNGLSEYLNINTQRNQRKIGM 181
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
+ RGK ++ C + F+ GT I F PD ++F + +F+ I GR+ ELAFLN
Sbjct: 182 RFVRGKKIS--ECNISSFKKNIINGTTINFKPDYQIFFSEFDFDSYVIGGRLNELAFLNS 239
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRKEIDGITVDIAL 240
L + L ED + ++S+ + + GG+ EY+ + +KK +H+ + K + ++I
Sbjct: 240 NLKLLL--EDRRSKIIKSSLFLHDGGIMEYINEMTINKKRLHNPIILSKIFNNSQIEIGF 297
Query: 241 QWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEHV 300
W + Y + IL + N+IRTV+GGTH+DG K +T+ +N L KK KEK ++SGE +
Sbjct: 298 VWSSEQYQENILSFVNNIRTVEGGTHVDGFKQGITKLVNLLSKKKIKSKEKLNSISGEFI 357
Query: 301 REGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEY-LTEYLELHPDVLDSVLSK 359
REGLTC+++VK PEFEGQ K++LGNP+++ +V+ I+E ++E + ++L+ VL K
Sbjct: 358 REGLTCLINVKTSEPEFEGQIKSKLGNPDIKFLVENLIKEEGEIHFIENNSNLLNIVLEK 417
Query: 360 ALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQ 419
A++A A A+K+A+ELVR+KS+L +LPGKL+DCS NP+ EIFIVEGDSAGGSAKQ
Sbjct: 418 AISAMNAYEASKKAKELVRKKSILEGITLPGKLSDCSEKNPQFSEIFIVEGDSAGGSAKQ 477
Query: 420 GRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKII 479
RDRRFQAILPLRGKI+NIE+ DE +Y N EIQ+LI LGLGV+G D LRYHKII
Sbjct: 478 ARDRRFQAILPLRGKIINIEKNDEKKIYNNTEIQSLISALGLGVRGNDEDLSNLRYHKII 537
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTR------GKQVHYCYD 533
I+TDADVDGAHIRTLLLTFFYRYQ+ L D+G++Y+ PPLYK+ K YCY
Sbjct: 538 IMTDADVDGAHIRTLLLTFFYRYQKELIDKGFVYIACPPLYKIENKKNKNLDKNTQYCYS 597
Query: 534 EADLKKLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVF 593
E +L+ + S + + N+QRFKGLGEMMP QLW+TTM PE R+LKK+ + DA A+ +F
Sbjct: 598 EGELEYIIQS--SHFNKNIQRFKGLGEMMPEQLWKTTMSPEMRILKKIKLSDAKRADKIF 655
Query: 594 SSLMGARVDVRKELIQNAANMIDLDQLDI 622
LMG++V RK+ IQ A++I +D LDI
Sbjct: 656 EVLMGSKVPERKKFIQIQASLIKIDSLDI 684
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.136 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,020,205,520
Number of Sequences: 2540612
Number of extensions: 43069634
Number of successful extensions: 129034
Number of sequences better than 10.0: 2607
Number of HSP's better than 10.0 without gapping: 2545
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 114994
Number of HSP's gapped (non-prelim): 3045
length of query: 622
length of database: 863,360,394
effective HSP length: 134
effective length of query: 488
effective length of database: 522,918,386
effective search space: 255184172368
effective search space used: 255184172368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)
Medicago: description of AC122169.6