BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122166.12 - phase: 0 /pseudo
(170 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_470208.1| Putative retroelement [Oryza sativa (japonica c... 66 3e-10
ref|XP_550075.1| hypothetical protein [Oryza sativa (japonica cu... 63 3e-09
ref|NP_908814.1| B1088D01.11 [Oryza sativa (japonica cultivar-gr... 63 4e-09
dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica ... 62 5e-09
dbj|BAD72443.1| cyst nematode resistance protein-like [Oryza sat... 61 1e-08
ref|NP_917609.1| putative cyst nematode resistance protein [Oryz... 60 2e-08
dbj|BAD52836.1| rust resistance protein Rp1-dp8-like [Oryza sati... 60 2e-08
gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cult... 57 2e-07
gb|AAP52472.1| putative non-LTR retroelement reverse transcripta... 57 3e-07
emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultiva... 57 3e-07
ref|NP_912382.1| hypothetical protein [Oryza sativa (japonica cu... 56 3e-07
emb|CAE05716.2| OSJNBb0065J09.12 [Oryza sativa (japonica cultiva... 56 3e-07
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 56 3e-07
ref|XP_479426.1| cyst nematode resistance protein-like protein [... 55 8e-07
gb|AAP53704.1| contains similarity to non-LTR reverse transcript... 55 8e-07
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 54 2e-06
gb|AAT93947.1| unknown protein [Oryza sativa (japonica cultivar-... 54 2e-06
emb|CAE04647.2| OSJNBa0061G20.3 [Oryza sativa (japonica cultivar... 54 2e-06
ref|XP_480974.1| cyst nematode resistance protein-like protein [... 53 4e-06
ref|NP_914307.1| reverse transcriptase -like protein [Oryza sati... 53 4e-06
>ref|XP_470208.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|27497213|gb|AAO17357.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|15451617|gb|AAK98741.1| Hypothetical protein similar
to putative retroelements [Oryza sativa]
Length = 387
Score = 66.2 bits (160), Expect = 3e-10
Identities = 43/137 (31%), Positives = 69/137 (49%), Gaps = 15/137 (10%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPS-EAGLCVSG*GVLESAQHLFLSCS 60
IW P +V FAW + ++RLPT+ NL + ++P+ LC + LE H+FL C
Sbjct: 229 IWRSAAPPRVKFFAWLMSKNRLPTRVNLHKKTILPTPTCELCNAN---LEDTYHIFLRCP 285
Query: 61 YFALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFL-QLIWLLCAWVLWTER 119
A W++++ + + + LSD +H+ S +FL +LLC W LW R
Sbjct: 286 MAAAFWNMIQ-----IIPEISSLSD-----LHNLELSGPLPTFLSSTFFLLCCWRLWNHR 335
Query: 120 NNMCFNDSIIPIPRLLD 136
N + F + I RL++
Sbjct: 336 NEVVFQNLPPSISRLIN 352
>ref|XP_550075.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|54290304|dbj|BAD61304.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 385
Score = 63.2 bits (152), Expect = 3e-09
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Query: 1 MIWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCS 60
+IW P K FAW ++++R+ T + L RG +C E+A HL C
Sbjct: 230 LIWKPWAPHKCKTFAWLIIQNRVWTSNRLATRGW--PNGSICPLCRHRQETAIHLLAECR 287
Query: 61 YFALLWSLVRDWIGFVGVDTNVL--SDHFVQFVHSTGGSK-ASQSFLQLIWLLCAWVLWT 117
Y +W + +W ++ ++ + ++ +T +K A + L+ + LL AW +W
Sbjct: 288 YTRRIWGAIAEWTACEQLNPSLWHQASTVSEWWEATANTKDAPKKALRTLTLLVAWEIWN 347
Query: 118 ERNNMCFNDSIIPIPRLLDKVKYLSLGW 145
ERN F + + LL K+K + W
Sbjct: 348 ERNRRTFQQKELSMGSLLAKIKEEAKSW 375
>ref|NP_908814.1| B1088D01.11 [Oryza sativa (japonica cultivar-group)]
Length = 375
Score = 62.8 bits (151), Expect = 4e-09
Identities = 50/178 (28%), Positives = 71/178 (39%), Gaps = 30/178 (16%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
IW P K FAW L +DRL T NL + ++ S C E++ HLF C +
Sbjct: 215 IWKNASPPKFKFFAWLLSKDRLSTAKNLFTKIILQSPQ--CAIRQTGEETSNHLFFMCPF 272
Query: 62 FALLWSLVR--------DWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAW 113
W+ +R I + N+ S HF F +LLC W
Sbjct: 273 ATAFWTTIRVPPNVTEVSNIHLLARPPNIPSKHFKTF-----------------YLLCFW 315
Query: 114 VLWTERNNMCFNDSIIPIPRLLDKVKYLSLGWLKTRKASFLFGTFSW---WSNPLQCL 168
LW R+++ F D + RL+ + K SL W + K + W +SN L L
Sbjct: 316 GLWNRRHDVVFRDFQPSVQRLILRCKEESLLWAERLKVNDRLEANVWCNIFSNSLSSL 373
>dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1197
Score = 62.4 bits (150), Expect = 5e-09
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
IW ++PLK+ +FAW L+RDRL TK NL+ + ++ + C E+A HL +C +
Sbjct: 1036 IWDCRMPLKIKLFAWLLVRDRLSTKLNLLKKKIV--QTATCDICSTTDETADHLSFNCPF 1093
Query: 62 FALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWTERNN 121
W + I + +T LS +T ++ QSF ++LC WVLW R++
Sbjct: 1094 AISFWQALH--IQPIINETKYLSQ---LKAPATIPTRHFQSF----FMLCFWVLWNHRHD 1144
Query: 122 MCFNDSIIPIPRLLDKVKYLSLGWLKTRKASFLFGTFSW---WSNPLQCL 168
+ F I L + S W +T F W +S+ LQ L
Sbjct: 1145 VVFRGRPPSIASCLQRGISESSLWAETFTPDDRFVIDVWKGVFSSSLQTL 1194
>dbj|BAD72443.1| cyst nematode resistance protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 185
Score = 60.8 bits (146), Expect = 1e-08
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Query: 1 MIWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCS 60
+IW P K FAW ++++R+ T L RG +C E+A HL +C
Sbjct: 25 LIWKAWAPHKCKTFAWLIIQNRVWTSDKLATRGW--PNGSICPLCRRTQETALHLLAACR 82
Query: 61 YFALLWSLVRDWIGFVGVDTNVL--SDHFVQFVHSTGG-SKASQSFLQLIWLLCAWVLWT 117
Y +W+ + +W+ ++ + + + + +T + + L+ + LL AW +W
Sbjct: 83 YTRRVWAALAEWVTCEQLNPSQWRQTSTVLDWWEATANIQETPKKTLRTLMLLVAWKIWN 142
Query: 118 ERNNMCFNDSIIPIPRLLDKVKYLSLGWL 146
ERN F + LL K+K + W+
Sbjct: 143 ERNRRTFQQKELSATSLLAKIKEEAKTWV 171
>ref|NP_917609.1| putative cyst nematode resistance protein [Oryza sativa (japonica
cultivar-group)]
Length = 1414
Score = 60.1 bits (144), Expect = 2e-08
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 1 MIWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCS 60
+IW K FAW ++++R+ T L RG +C V E+A HL C
Sbjct: 1270 LIWKPWALRKCKTFAWLVIQNRVWTSDRLSTRGW--PNGSICPLCRRVQETALHLLAGCR 1327
Query: 61 YFALLWSLVRDWIGFVGVDTN---VLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWT 117
Y +W+ + +W + N +S + +T +A + L+ + L W +W
Sbjct: 1328 YTKRIWATLAEWTACNNIHPNHWWQVSSVLEWWDQTTSVKEAPKKALRSLTFLVVWEIWN 1387
Query: 118 ERNNMCFNDSIIPIPRLLDKVK 139
ERN F +P LL K+K
Sbjct: 1388 ERNRRTFQHKELPPSGLLTKIK 1409
>dbj|BAD52836.1| rust resistance protein Rp1-dp8-like [Oryza sativa (japonica
cultivar-group)]
Length = 1374
Score = 60.1 bits (144), Expect = 2e-08
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 1 MIWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCS 60
+IW K FAW ++++R+ T L RG +C V E+A HL C
Sbjct: 1230 LIWKPWALRKCKTFAWLVIQNRVWTSDRLSTRGW--PNGSICPLCRRVQETALHLLAGCR 1287
Query: 61 YFALLWSLVRDWIGFVGVDTN---VLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWT 117
Y +W+ + +W + N +S + +T +A + L+ + L W +W
Sbjct: 1288 YTKRIWATLAEWTACNNIHPNHWWQVSSVLEWWDQTTSVKEAPKKALRSLTFLVVWEIWN 1347
Query: 118 ERNNMCFNDSIIPIPRLLDKVK 139
ERN F +P LL K+K
Sbjct: 1348 ERNRRTFQHKELPPSGLLTKIK 1369
>gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1023
Score = 57.0 bits (136), Expect = 2e-07
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 9/150 (6%)
Query: 1 MIWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCS 60
+IW + P K AW ++++R+ T L RG G C E+A HL C
Sbjct: 862 LIWKVWAPGKCKFHAWLIIQNRVWTSDRLATRGW--RNNGHCPLCRCDTETALHLVAMCR 919
Query: 61 YFALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKAS-----QSFLQLIWLLCAWVL 115
Y +W LV W G+ ++ + + VH S A+ + L+ + LL W +
Sbjct: 920 YTKRIWRLVATWAGYQQLEPAQWEE--ARSVHQWWESLANTPGIPKKGLRSLILLVVWEI 977
Query: 116 WTERNNMCFNDSIIPIPRLLDKVKYLSLGW 145
W ERN F+ + LL K+K + W
Sbjct: 978 WKERNRRIFDHKEMATGVLLAKIKEEASLW 1007
>gb|AAP52472.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37531766|ref|NP_920185.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|21321762|gb|AAM47297.1| Putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|18657018|gb|AAL78105.1| Putative
non-LTR retroelement reverse transcriptase [Oryza
sativa]
Length = 362
Score = 56.6 bits (135), Expect = 3e-07
Identities = 47/164 (28%), Positives = 71/164 (42%), Gaps = 26/164 (15%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGL-CVSG*GVL-ESAQHLFLSC 59
IW + +K+ VFAW L DR T+ L R L CV G L E+ H+F +C
Sbjct: 207 IWKTKCVIKIKVFAWLLSLDRFNTRDMLDRRHCAKENDDLTCVLCYGDLRETKLHIFFAC 266
Query: 60 SYFALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWTER 119
Y W L +GF L+ +F Q V + FL+ I+ + AW +W +R
Sbjct: 267 PYSLRCWQL----LGFHW----FLNLNFFQMVVLARNRFGMKGFLE-IFFIAAWYIWKQR 317
Query: 120 NNMCF---------------NDSIIPIPRLLDKVKYLSLGWLKT 148
N M F + ++ + R+ + +K L WL+T
Sbjct: 318 NGMIFQNVPLTFHGWKVQFRKELLLHMCRMKEPLKQLVFDWLQT 361
>emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultivar-group)]
Length = 1189
Score = 56.6 bits (135), Expect = 3e-07
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 9/150 (6%)
Query: 1 MIWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCS 60
+IW + P K AW ++++R+ T L RG G C E+A HL C
Sbjct: 1028 LIWKVWAPGKCKFHAWLIIQNRVWTSDRLATRGW--RNNGHCPLCRCDTETAFHLVAMCR 1085
Query: 61 YFALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKAS-----QSFLQLIWLLCAWVL 115
Y +W LV W G+ ++ + + VH S A+ + L+ + LL W +
Sbjct: 1086 YTKRIWRLVATWAGYQQLEPAQWEE--ARSVHQWWESLANTPGIPKKGLRSLILLVVWEI 1143
Query: 116 WTERNNMCFNDSIIPIPRLLDKVKYLSLGW 145
W ERN F+ + LL K+K + W
Sbjct: 1144 WKERNRRIFDHKEMATGVLLAKIKEEASLW 1173
>ref|NP_912382.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|29893670|gb|AAP06924.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1143
Score = 56.2 bits (134), Expect = 3e-07
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 9/150 (6%)
Query: 1 MIWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCS 60
+IW + P K AW ++++R+ T L RG G C E+A HL C
Sbjct: 982 LIWKVWAPGKCKFHAWLIIQNRVWTSDRLATRGW--RNNGHCPLCRCDTETALHLVAMCR 1039
Query: 61 YFALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKAS-----QSFLQLIWLLCAWVL 115
Y +W LV W G+ + + + VH S A+ + L+ + LL W +
Sbjct: 1040 YTKRIWRLVATWAGYQQFEPAQWEE--ARSVHQWWESLANTPGIPKKGLRSLILLVVWEI 1097
Query: 116 WTERNNMCFNDSIIPIPRLLDKVKYLSLGW 145
W ERN F+ + LL K+K + W
Sbjct: 1098 WKERNRRIFDHKEMATGVLLAKIKEEASLW 1127
>emb|CAE05716.2| OSJNBb0065J09.12 [Oryza sativa (japonica cultivar-group)]
Length = 436
Score = 56.2 bits (134), Expect = 3e-07
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 5/148 (3%)
Query: 1 MIWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCS 60
+IW P K + W ++++R+ T L RG G C E+ HL +C
Sbjct: 275 LIWKAWAPGKCKFYVWLIIQNRVWTSDRLAIRGW--QNNGHCPLCRCEAETGLHLVATCR 332
Query: 61 YFALLWSLVRDWIGFVGVDTNVLSD--HFVQFVHSTGGS-KASQSFLQLIWLLCAWVLWT 117
Y +W V W+G+ ++ + + Q+ S + + L+ + LL W +W
Sbjct: 333 YTKRIWHHVAGWVGYHQLEPSQWEEAQSVCQWWESLANTPNIPKKGLRSLILLVVWEIWK 392
Query: 118 ERNNMCFNDSIIPIPRLLDKVKYLSLGW 145
ERN F++ + + LL K+K + W
Sbjct: 393 ERNRRIFDNKEMAVGLLLAKIKEEASVW 420
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 56.2 bits (134), Expect = 3e-07
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRG--VIPSEAGLCVSG*GVLESAQHLFLSC 59
IW +VPLK+ +F W ++++ TK NL+ RG ++ C +E+ QHLF C
Sbjct: 844 IWKFRVPLKIRIFIWFFTKNKILTKDNLLKRGWRKGDNKCQFC----DKVETVQHLFFDC 899
Query: 60 SYFALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWTER 119
L+W+++ + V + D F ++ S K +++ + + W +W R
Sbjct: 900 PLARLIWNIIACALNVKPVLSR--QDLFGSWIQSM--DKFTKNLVIVGIAAVLWSIWKCR 955
Query: 120 NNMCFNDSIIPIPRLLDKVKYLSLGWL 146
N CF +P ++ YL+ W+
Sbjct: 956 NKACFERK---LPNDPIELVYLACNWV 979
>ref|XP_479426.1| cyst nematode resistance protein-like protein [Oryza sativa
(japonica cultivar-group)] gi|50510233|dbj|BAD31431.1|
cyst nematode resistance protein-like protein [Oryza
sativa (japonica cultivar-group)]
gi|22296318|dbj|BAC10089.1| cyst nematode resistance
protein-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 210
Score = 55.1 bits (131), Expect = 8e-07
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEA-GLCVSG*GVLESAQHLFLSCS 60
IW P +V F W R R T NL +G ++ LC+ E HLF++C
Sbjct: 55 IWQTNAPSRVRFFFWLAARGRCQTADNLAKKGWPHEDSCALCMRE---QEDCHHLFVTCE 111
Query: 61 YFALLWSLVRDWIGF-----VGVDTNVLSDHF-VQFVHSTGGSKASQSFLQLIWLLCAWV 114
+ +W L+R WI +D +++ F + TG + + L L+ W+
Sbjct: 112 FSGRVWELMRAWISVDFPIPGQIDCSLIDWWFEARRCFRTGYREIFDAVLMLV----CWL 167
Query: 115 LWTERNNMCFNDSIIPIPRLLDKVK 139
+W ERN F + +L++ +K
Sbjct: 168 IWKERNARIFEQRLRSPEQLVEDIK 192
>gb|AAP53704.1| contains similarity to non-LTR reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534230|ref|NP_921417.1|
contains similarity to non-LTR reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 379
Score = 55.1 bits (131), Expect = 8e-07
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
IW + PLKV FAW L++DRL TK NL + ++P++ +C G E+A HL C +
Sbjct: 266 IWKCKAPLKVKFFAWLLVKDRLSTKKNLHKKTIVPND--ICDICNGATETASHLCFFCPF 323
Query: 62 FALLWSLV 69
W +
Sbjct: 324 AKSFWDKI 331
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 53.9 bits (128), Expect = 2e-06
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
IW + VP K+ F WR + + L SNL YR + ++ CV E+ HL C +
Sbjct: 1054 IWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKS--CVRCPSHGETVNHLLFKCPF 1111
Query: 62 FALLWSL--VRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWTER 119
L W++ + G ++ + H V VH + ++ L + W+L W LW R
Sbjct: 1112 ARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHAL-IPWIL--WRLWKNR 1168
Query: 120 NNMCFNDSIIPIPRLLDK 137
N++ F P+++ K
Sbjct: 1169 NDLVFKGREFTAPQVILK 1186
>gb|AAT93947.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 144
Score = 53.9 bits (128), Expect = 2e-06
Identities = 40/135 (29%), Positives = 57/135 (41%), Gaps = 13/135 (9%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPS-EAGLCVSG*GVLESAQHLFLSCS 60
IW P +V F W + +RLPT NL + IPS LC + E H+FL+
Sbjct: 13 IWKSSAPPRVKFFGWLMTMNRLPTAVNLHKKSTIPSLTCQLCNT---CPEDTDHIFLAYP 69
Query: 61 YFALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWTERN 120
+ W L++ V + S + +H +G + +LLC W LW RN
Sbjct: 70 LASAFWGLIQ-------VLPMLTSLSEIHTIHWSG--DLPERLNSTFFLLCCWRLWNHRN 120
Query: 121 NMCFNDSIIPIPRLL 135
+ F I RLL
Sbjct: 121 EVVFQLLAPSINRLL 135
>emb|CAE04647.2| OSJNBa0061G20.3 [Oryza sativa (japonica cultivar-group)]
gi|50923463|ref|XP_472092.1| OSJNBa0061G20.3 [Oryza
sativa (japonica cultivar-group)]
Length = 1463
Score = 53.5 bits (127), Expect = 2e-06
Identities = 40/143 (27%), Positives = 62/143 (42%), Gaps = 9/143 (6%)
Query: 1 MIWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSE--AGLCVSG*GVLESAQHLFLS 58
+IW P K FAW +L++R+ T L R P+ LC LE AQHLF
Sbjct: 1305 LIWKTWAPSKCKKFAWLVLQNRIWTSDRLQLRQW-PNNYFCQLCYRN---LEMAQHLFKD 1360
Query: 59 CSYFALLWSLVRDWIGF-VGVDTNVLSDHFVQFVHSTGG--SKASQSFLQLIWLLCAWVL 115
C + +W + + + + V + S SK +Q + +L +W +
Sbjct: 1361 CPFTREIWDKIMARMNHNQPFPVHNTDESLVDWWESRTKQQSKCQSKGMQSLHILLSWEI 1420
Query: 116 WTERNNMCFNDSIIPIPRLLDKV 138
W ERN F D + IP+L ++
Sbjct: 1421 WCERNRRVFKDKELQIPQLTARI 1443
>ref|XP_480974.1| cyst nematode resistance protein-like protein [Oryza sativa
(japonica cultivar-group)] gi|40253728|dbj|BAD05668.1|
cyst nematode resistance protein-like protein [Oryza
sativa (japonica cultivar-group)]
gi|40253549|dbj|BAD05496.1| cyst nematode resistance
protein-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 184
Score = 52.8 bits (125), Expect = 4e-06
Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 MIWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCS 60
++W + P KV F W + R T NL RG + CV E HLF+SC
Sbjct: 49 LVWQTKAPSKVRFFLWLATKSRCLTADNLAKRGWPHQDQ--CVLCQRQQEDCLHLFVSCD 106
Query: 61 YFALLWSLVRDWIG----FVGVDTNVLSD 85
Y +W L+RDWI G D L+D
Sbjct: 107 YTKRVWRLLRDWINVDFPLPGQDGETLAD 135
>ref|NP_914307.1| reverse transcriptase -like protein [Oryza sativa (japonica
cultivar-group)]
Length = 727
Score = 52.8 bits (125), Expect = 4e-06
Identities = 41/149 (27%), Positives = 60/149 (39%), Gaps = 8/149 (5%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
IW +Q KV F WRL + LP K N+ R +P LC E+ H FL C
Sbjct: 493 IWSLQCIPKVKQFIWRLAHNSLPLKLNIKRR--VPDAETLCPVCKRFDENGGHCFLQCKP 550
Query: 62 FALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWTERNN 121
L W ++ + + V + VQ + + + F L WV W RN
Sbjct: 551 MKLCWRILCLEDIRLSLTQLVSARDVVQTILKLENDRRMEVFFLL------WVWWYARNK 604
Query: 122 MCFNDSIIPIPRLLDKVKYLSLGWLKTRK 150
+ + +I + ++ KVK L RK
Sbjct: 605 VNSGEDVIRVEEVVHKVKQLICDHASLRK 633
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.331 0.143 0.497
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 318,345,115
Number of Sequences: 2540612
Number of extensions: 12205369
Number of successful extensions: 26644
Number of sequences better than 10.0: 193
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 26397
Number of HSP's gapped (non-prelim): 208
length of query: 170
length of database: 863,360,394
effective HSP length: 119
effective length of query: 51
effective length of database: 561,027,566
effective search space: 28612405866
effective search space used: 28612405866
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 70 (31.6 bits)
Medicago: description of AC122166.12