BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122166.1 + phase: 0
(55 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_481695.1| helicase-like protein [Oryza sativa (japonica c... 58 6e-08
ref|XP_479365.1| helicase-like protein [Oryza sativa (japonica c... 58 6e-08
dbj|BAB01023.1| helicase-like protein [Arabidopsis thaliana] 58 6e-08
ref|NP_189677.1| hypothetical protein [Arabidopsis thaliana] 58 6e-08
gb|AAX95983.1| hypothetical protein LOC_Os11g13920 [Oryza sativa... 58 6e-08
ref|NP_913627.1| putative helicase [Oryza sativa (japonica culti... 58 8e-08
emb|CAB91581.1| putative protein [Arabidopsis thaliana] gi|15228... 58 8e-08
dbj|BAD81603.1| helicase-like protein [Oryza sativa (japonica cu... 58 8e-08
gb|AAM15435.1| unknown protein [Arabidopsis thaliana] gi|2019761... 57 2e-07
gb|AAG52315.1| hypothetical protein, 5' partial; 93859-91015 [Ar... 57 2e-07
ref|NP_174828.1| AT hook motif-containing protein-related [Arabi... 57 2e-07
emb|CAD40309.2| OSJNBb0013O03.4 [Oryza sativa (japonica cultivar... 57 2e-07
ref|NP_189741.1| hypothetical protein [Arabidopsis thaliana] 56 3e-07
dbj|BAB10788.1| replication protein A1-like [Arabidopsis thalian... 55 4e-07
dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana] 55 4e-07
ref|NP_198346.1| hypothetical protein [Arabidopsis thaliana] 55 4e-07
ref|NP_187933.1| hypothetical protein [Arabidopsis thaliana] 55 4e-07
gb|AAD32757.1| putative helicase [Arabidopsis thaliana] gi|25353... 55 5e-07
ref|NP_914485.1| P0489A01.23 [Oryza sativa (japonica cultivar-gr... 55 7e-07
gb|AAX95750.1| Eukaryotic protein of unknown function (DUF889), ... 54 8e-07
>ref|XP_481695.1| helicase-like protein [Oryza sativa (japonica cultivar-group)]
gi|38424032|dbj|BAD01692.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
gi|38637630|dbj|BAD03910.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 1430
Score = 58.2 bits (139), Expect = 6e-08
Identities = 28/51 (54%), Positives = 36/51 (69%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
+ V++ F+HGQLYVAISRVTSR GLKILI +DDG +++Y EV
Sbjct: 1337 VGVYLRKPVFTHGQLYVAISRVTSRSGLKILIENDDGSCGTQTKNIVYSEV 1387
>ref|XP_479365.1| helicase-like protein [Oryza sativa (japonica cultivar-group)]
gi|50509840|dbj|BAD32013.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
gi|34394334|dbj|BAC84865.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 1516
Score = 58.2 bits (139), Expect = 6e-08
Identities = 28/51 (54%), Positives = 36/51 (69%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
+ V++ F+HGQLYVAISRVTSR GLKILI +DDG +++Y EV
Sbjct: 1423 VGVYLRKPVFTHGQLYVAISRVTSRSGLKILIENDDGSCGTQTKNIVYSEV 1473
>dbj|BAB01023.1| helicase-like protein [Arabidopsis thaliana]
Length = 1669
Score = 58.2 bits (139), Expect = 6e-08
Identities = 25/46 (54%), Positives = 36/46 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRV S+GGLK+LI D G + ++V+++E+ RN+
Sbjct: 1624 FSHGQLYVAMSRVKSKGGLKVLITDSKGKQKNETTNVVFKEIFRNL 1669
>ref|NP_189677.1| hypothetical protein [Arabidopsis thaliana]
Length = 1473
Score = 58.2 bits (139), Expect = 6e-08
Identities = 25/46 (54%), Positives = 36/46 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRV S+GGLK+LI D G + ++V+++E+ RN+
Sbjct: 1428 FSHGQLYVAMSRVKSKGGLKVLITDSKGKQKNETTNVVFKEIFRNL 1473
>gb|AAX95983.1| hypothetical protein LOC_Os11g13920 [Oryza sativa (japonica
cultivar-group)]
Length = 2157
Score = 58.2 bits (139), Expect = 6e-08
Identities = 28/51 (54%), Positives = 36/51 (69%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
+ V++ F+HGQLYVAISRVTSR GLKILI +DDG +++Y EV
Sbjct: 1514 VGVYLRKPVFTHGQLYVAISRVTSRSGLKILIENDDGSCGTQTKNIVYSEV 1564
>ref|NP_913627.1| putative helicase [Oryza sativa (japonica cultivar-group)]
Length = 1453
Score = 57.8 bits (138), Expect = 8e-08
Identities = 27/51 (52%), Positives = 36/51 (69%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
+ V++ F+HGQLYVA+SR TSR GL+ILI DDDG + +V+Y EV
Sbjct: 1387 VGVYLKKAVFTHGQLYVAVSRSTSRDGLRILIKDDDGACSSKTRNVVYHEV 1437
>emb|CAB91581.1| putative protein [Arabidopsis thaliana] gi|15228453|ref|NP_189796.1|
AT hook motif-containing protein-related [Arabidopsis
thaliana] gi|11357786|pir||T48965 hypothetical protein
F4M19.60 - Arabidopsis thaliana
Length = 1752
Score = 57.8 bits (138), Expect = 8e-08
Identities = 27/46 (58%), Positives = 37/46 (79%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLKILI D DG+ ++V+++EV +N+
Sbjct: 1706 FSHGQLYVALSRVTSKKGLKILILDKDGNMQKQTTNVVFKEVFQNI 1751
>dbj|BAD81603.1| helicase-like protein [Oryza sativa (japonica cultivar-group)]
Length = 1652
Score = 57.8 bits (138), Expect = 8e-08
Identities = 27/51 (52%), Positives = 36/51 (69%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
+ V++ F+HGQLYVA+SR TSR GL+ILI DDDG + +V+Y EV
Sbjct: 1586 VGVYLKKAVFTHGQLYVAVSRSTSRDGLRILIKDDDGACSSKTRNVVYHEV 1636
>gb|AAM15435.1| unknown protein [Arabidopsis thaliana] gi|20197614|gb|AAM15154.1|
unknown protein [Arabidopsis thaliana]
Length = 1308
Score = 56.6 bits (135), Expect = 2e-07
Identities = 26/46 (56%), Positives = 37/46 (79%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRV SR GLKILI D++G+ ++V+++EV +N+
Sbjct: 1256 FSHGQLYVAVSRVKSRRGLKILIIDEEGNRGKTTTNVVFKEVFQNL 1301
>gb|AAG52315.1| hypothetical protein, 5' partial; 93859-91015 [Arabidopsis
thaliana]
Length = 729
Score = 56.6 bits (135), Expect = 2e-07
Identities = 27/46 (58%), Positives = 36/46 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLKILI D DG ++V+++EV +N+
Sbjct: 683 FSHGQLYVALSRVTSKKGLKILILDKDGKLQKQTTNVVFKEVFQNI 728
>ref|NP_174828.1| AT hook motif-containing protein-related [Arabidopsis thaliana]
gi|25511694|pir||D86481 189.6K hypothetical protein
F10O5.11 - Arabidopsis thaliana
gi|12322087|gb|AAG51081.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1678
Score = 56.6 bits (135), Expect = 2e-07
Identities = 27/46 (58%), Positives = 36/46 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLKILI D DG ++V+++EV +N+
Sbjct: 1632 FSHGQLYVALSRVTSKKGLKILILDKDGKLQKQTTNVVFKEVFQNI 1677
>emb|CAD40309.2| OSJNBb0013O03.4 [Oryza sativa (japonica cultivar-group)]
Length = 2052
Score = 56.6 bits (135), Expect = 2e-07
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
+ V++ F+HGQLYV ISR TSR GLKILI DD+ S+V+Y E+ R++
Sbjct: 1364 VGVYLKKPVFTHGQLYVVISRATSRSGLKILIEDDNESCASETSNVVYHEILRSL 1418
>ref|NP_189741.1| hypothetical protein [Arabidopsis thaliana]
Length = 1099
Score = 55.8 bits (133), Expect = 3e-07
Identities = 24/46 (52%), Positives = 36/46 (78%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLK+LI D +G+ +V+++E+ +N+
Sbjct: 1052 FSHGQLYVALSRVTSKKGLKVLIVDKEGNTQSQTMNVVFKEIFQNI 1097
>dbj|BAB10788.1| replication protein A1-like [Arabidopsis thaliana]
gi|3695387|gb|AAC62789.1| contains similarity to
replication protein A1 [Arabidopsis thaliana]
gi|7487549|pir||T01955 hypothetical protein T2L5.8 -
Arabidopsis thaliana
Length = 1073
Score = 55.5 bits (132), Expect = 4e-07
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
+ +++ FSHGQLYVA+SRVTS+ GLK LI D DG ++V+++EV +N+
Sbjct: 1018 VGLYLPKAVFSHGQLYVALSRVTSKKGLKFLILDKDGKLQKQTTNVVFKEVFQNI 1072
>dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana]
Length = 1428
Score = 55.5 bits (132), Expect = 4e-07
Identities = 26/46 (56%), Positives = 36/46 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLKILI D +G ++V+++EV +N+
Sbjct: 1383 FSHGQLYVALSRVTSKTGLKILILDKEGKIQKQTTNVVFKEVFQNI 1428
>ref|NP_198346.1| hypothetical protein [Arabidopsis thaliana]
Length = 1033
Score = 55.5 bits (132), Expect = 4e-07
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
+ +++ FSHGQLYVA+SRVTS+ GLK LI D DG ++V+++EV +N+
Sbjct: 978 VGLYLPKAVFSHGQLYVALSRVTSKKGLKFLILDKDGKLQKQTTNVVFKEVFQNI 1032
>ref|NP_187933.1| hypothetical protein [Arabidopsis thaliana]
Length = 1419
Score = 55.5 bits (132), Expect = 4e-07
Identities = 26/46 (56%), Positives = 36/46 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLKILI D +G ++V+++EV +N+
Sbjct: 1374 FSHGQLYVALSRVTSKTGLKILILDKEGKIQKQTTNVVFKEVFQNI 1419
>gb|AAD32757.1| putative helicase [Arabidopsis thaliana] gi|25353663|pir||H84486
probable helicase [imported] - Arabidopsis thaliana
Length = 1241
Score = 55.1 bits (131), Expect = 5e-07
Identities = 24/46 (52%), Positives = 36/46 (78%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLK+LI D +G+ +V+++E+ +N+
Sbjct: 1194 FSHGQLYVALSRVTSKKGLKVLIVDKEGNTQSQTMNVVFKEIFQNL 1239
>ref|NP_914485.1| P0489A01.23 [Oryza sativa (japonica cultivar-group)]
Length = 1489
Score = 54.7 bits (130), Expect = 7e-07
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
+ V++ F+HGQLYV ISR TSR GLKILI +DDG + +++Y E+
Sbjct: 1417 VGVYLRKPIFTHGQLYVTISRATSRSGLKILIENDDGSCGNHTRNIVYSEI 1467
>gb|AAX95750.1| Eukaryotic protein of unknown function (DUF889), putative [Oryza
sativa (japonica cultivar-group)]
Length = 1806
Score = 54.3 bits (129), Expect = 8e-07
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
+ V++ F+HGQLYVA SR TSR GL+ILI +DDG +V+Y E+
Sbjct: 1244 VGVYLKKPVFTHGQLYVAFSRATSRSGLRILIENDDGSCGSETKNVVYHEI 1294
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,882,589
Number of Sequences: 2540612
Number of extensions: 2551981
Number of successful extensions: 6984
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6898
Number of HSP's gapped (non-prelim): 89
length of query: 55
length of database: 863,360,394
effective HSP length: 31
effective length of query: 24
effective length of database: 784,601,422
effective search space: 18830434128
effective search space used: 18830434128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)
Medicago: description of AC122166.1