BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122162.5 + phase: 1 /partial
(95 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_472414.1| OJ000126_13.13 [Oryza sativa (japonica cultivar... 82 3e-15
ref|NP_565646.2| RNA recognition motif (RRM)-containing protein ... 79 2e-14
gb|AAM65119.1| unknown [Arabidopsis thaliana] gi|9759319|dbj|BAB... 76 2e-13
gb|AAH48027.1| Cold inducible RNA binding protein [Danio rerio] ... 72 3e-12
gb|AAH57481.1| Cirbp protein [Danio rerio] 72 3e-12
gb|AAM61313.1| putative RNA-binding protein [Arabidopsis thalian... 70 1e-11
gb|AAO32675.1| hyperosmotic glycine rich protein [Salmo salar] 70 1e-11
ref|NP_177494.1| RNA recognition motif (RRM)-containing protein ... 69 2e-11
gb|AAF31404.1| putative glycine-rich RNA-binding protein 2 [Cath... 69 3e-11
ref|NP_001017228.1| hypothetical protein LOC549982 [Xenopus trop... 69 3e-11
gb|AAF31403.1| putative glycine-rich RNA binding protein 3 [Cath... 68 6e-11
ref|NP_001017797.1| hypothetical protein LOC550495 [Danio rerio]... 67 1e-10
ref|XP_657084.1| RNA-binding protein, putative [Entamoeba histol... 67 1e-10
gb|AAF31402.1| putative glycine-rich RNA binding protein 1 [Cath... 67 1e-10
ref|XP_470338.1| putative RNA binding protein [Oryza sativa (jap... 66 2e-10
pir||S59529 RNA-binding glycine-rich protein-1 (RGP-1c) - wood t... 66 2e-10
gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum] 65 4e-10
gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum] 65 4e-10
gb|AAD28176.1| glycine-rich RNA-binding protein [Picea glauca] 65 5e-10
gb|AAH54250.1| Xcirp2 protein [Xenopus laevis] gi|11761319|dbj|B... 65 5e-10
>ref|XP_472414.1| OJ000126_13.13 [Oryza sativa (japonica cultivar-group)]
gi|38346331|emb|CAE02067.2| OJ000126_13.13 [Oryza sativa
(japonica cultivar-group)] gi|38344030|emb|CAE01512.2|
OJ991214_12.1 [Oryza sativa (japonica cultivar-group)]
Length = 137
Score = 82.0 bits (201), Expect = 3e-15
Identities = 40/64 (62%), Positives = 50/64 (77%)
Query: 6 TEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKILHGRVL 65
TE+ LAEAFSQYG V++A IV +K R KGFG+V FA EE A KA+ MNGK+L+GRV+
Sbjct: 49 TEDSLAEAFSQYGQVLEATIVTDKMTNRPKGFGFVKFASEEAANKAKEEMNGKVLNGRVI 108
Query: 66 YVDM 69
YVD+
Sbjct: 109 YVDI 112
>ref|NP_565646.2| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 116
Score = 79.3 bits (194), Expect = 2e-14
Identities = 37/83 (44%), Positives = 59/83 (70%), Gaps = 6/83 (7%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
++FS+TEE L +AFSQYG V+K D++++K + R KGF YVTF+ +EEA KA + +N +++
Sbjct: 28 ISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLV 87
Query: 61 HGRVLYVDM------DPPNEQKN 77
GRV+ +D +PP+ + N
Sbjct: 88 DGRVVILDTTKAAKHNPPDTKPN 110
>gb|AAM65119.1| unknown [Arabidopsis thaliana] gi|9759319|dbj|BAB09686.1| unnamed
protein product [Arabidopsis thaliana]
gi|20260002|gb|AAM13348.1| unknown protein [Arabidopsis
thaliana] gi|17065276|gb|AAL32792.1| Unknown protein
[Arabidopsis thaliana] gi|15239958|ref|NP_196239.1|
RNA-binding protein, putative [Arabidopsis thaliana]
Length = 146
Score = 76.3 bits (186), Expect = 2e-13
Identities = 36/68 (52%), Positives = 52/68 (75%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L+F TTE+ L+EAFS+ G VV+A IV+++ R KGFG+VTFA +EA+KA + NG+ L
Sbjct: 41 LSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQL 100
Query: 61 HGRVLYVD 68
+GR ++VD
Sbjct: 101 NGRTIFVD 108
>gb|AAH48027.1| Cold inducible RNA binding protein [Danio rerio]
gi|45544646|ref|NP_956311.1| cold inducible RNA binding
protein [Danio rerio]
Length = 184
Score = 72.0 bits (175), Expect = 3e-12
Identities = 31/68 (45%), Positives = 47/68 (68%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L++ TTE+ L EAFS+YG + K D++ ++ R +GFG+VTF E+A+ A MNGK +
Sbjct: 12 LSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQV 71
Query: 61 HGRVLYVD 68
GR++ VD
Sbjct: 72 DGRMIRVD 79
>gb|AAH57481.1| Cirbp protein [Danio rerio]
Length = 121
Score = 72.0 bits (175), Expect = 3e-12
Identities = 31/68 (45%), Positives = 47/68 (68%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L++ TTE+ L EAFS+YG + K D++ ++ R +GFG+VTF E+A+ A MNGK +
Sbjct: 5 LSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQV 64
Query: 61 HGRVLYVD 68
GR++ VD
Sbjct: 65 DGRMIRVD 72
>gb|AAM61313.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20197470|gb|AAM15089.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|25408558|pir||F84793 probable
RNA-binding protein [imported] - Arabidopsis thaliana
gi|15224298|ref|NP_181287.1| RNA-binding protein,
putative [Arabidopsis thaliana]
Length = 142
Score = 70.1 bits (170), Expect = 1e-11
Identities = 33/77 (42%), Positives = 50/77 (64%)
Query: 5 TTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKILHGRV 64
TT EKL +AF+ +G +V A ++ ++ R KGFG+VT+A E+A KA+ MN K L G V
Sbjct: 45 TTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWV 104
Query: 65 LYVDMDPPNEQKNKIKQ 81
++VD P E + ++Q
Sbjct: 105 IFVDPARPREPRRPLQQ 121
>gb|AAO32675.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 205
Score = 70.1 bits (170), Expect = 1e-11
Identities = 31/68 (45%), Positives = 48/68 (70%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L+F TTE+ LAEAFS+YGN+ K D+++++ R +GFG+V + E+A+ A MNG+ L
Sbjct: 12 LSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQSL 71
Query: 61 HGRVLYVD 68
GR + V+
Sbjct: 72 DGRTIRVN 79
>ref|NP_177494.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana] gi|25406274|pir||A96762 probable RNA-binding
glycine-rich protein T9L24.48 [imported] - Arabidopsis
thaliana gi|11120799|gb|AAG30979.1| RNA-binding
glycine-rich protein, putative [Arabidopsis thaliana]
gi|62867629|gb|AAY17418.1| At1g73530 [Arabidopsis
thaliana]
Length = 181
Score = 69.3 bits (168), Expect = 2e-11
Identities = 31/68 (45%), Positives = 48/68 (70%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L+F TTE+ L + F Q+GN++ ++V++K R KGF ++ + EEEA KA GM+GK L
Sbjct: 84 LSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFL 143
Query: 61 HGRVLYVD 68
GRV++V+
Sbjct: 144 DGRVIFVE 151
>gb|AAF31404.1| putative glycine-rich RNA-binding protein 2 [Catharanthus roseus]
Length = 160
Score = 68.9 bits (167), Expect = 3e-11
Identities = 30/68 (44%), Positives = 51/68 (74%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
LA++TT++ L+EAFSQYG V+++ ++ ++ R +GFG+VTF +E+ + A +GMNG+ L
Sbjct: 15 LAWATTDQSLSEAFSQYGEVLESKVINDRETGRSRGFGFVTFGDEKSMKDAIVGMNGQTL 74
Query: 61 HGRVLYVD 68
GR + V+
Sbjct: 75 DGRNITVN 82
>ref|NP_001017228.1| hypothetical protein LOC549982 [Xenopus tropicalis]
Length = 166
Score = 68.9 bits (167), Expect = 3e-11
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L F TTEE L + FS+YG V + +V ++ KR +GFG+VTF E+A+ A + MNGK +
Sbjct: 13 LNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSV 72
Query: 61 HGRVLYVD 68
GR + VD
Sbjct: 73 DGRQIRVD 80
>gb|AAF31403.1| putative glycine-rich RNA binding protein 3 [Catharanthus roseus]
Length = 164
Score = 67.8 bits (164), Expect = 6e-11
Identities = 31/68 (45%), Positives = 50/68 (72%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
LA++TT++ L+EAFSQYG ++++ I+ ++ R +GFG+VTF +E+ R A GMNG+ L
Sbjct: 15 LAWATTDQSLSEAFSQYGEILESKIINDRETGRSRGFGFVTFKDEQSMRDAIEGMNGQTL 74
Query: 61 HGRVLYVD 68
GR + V+
Sbjct: 75 DGRNITVN 82
>ref|NP_001017797.1| hypothetical protein LOC550495 [Danio rerio]
gi|63100518|gb|AAH95030.1| Hypothetical protein
LOC550495 [Danio rerio] gi|62202782|gb|AAH93299.1|
Hypothetical protein LOC550495 [Danio rerio]
Length = 185
Score = 67.0 bits (162), Expect = 1e-10
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L+F TTE+ L +AFS+YG + + N+ R +GFG+VTF ++A+ A GMNGK +
Sbjct: 12 LSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGMNGKSV 71
Query: 61 HGRVLYVD 68
GR + VD
Sbjct: 72 DGRTIRVD 79
>ref|XP_657084.1| RNA-binding protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|56474323|gb|EAL51698.1| RNA-binding protein,
putative [Entamoeba histolytica HM-1:IMSS]
Length = 136
Score = 67.0 bits (162), Expect = 1e-10
Identities = 32/75 (42%), Positives = 49/75 (64%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
LA+S T+E L AF ++G V +V ++ +R KGFG+VTF ++E+A+KA MN + L
Sbjct: 9 LAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEEMNEQEL 68
Query: 61 HGRVLYVDMDPPNEQ 75
GR + VD+ P E+
Sbjct: 69 EGRRIKVDVSRPREE 83
>gb|AAF31402.1| putative glycine-rich RNA binding protein 1 [Catharanthus roseus]
Length = 137
Score = 66.6 bits (161), Expect = 1e-10
Identities = 31/68 (45%), Positives = 50/68 (72%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
LA++TT++ L+EAFSQYG V+++ I+ ++ R +GFG+VTF +E+ + A GMNG+ L
Sbjct: 15 LAWATTDQSLSEAFSQYGEVLESKIINDRETGRSRGFGFVTFGDEKSMKDAIEGMNGQTL 74
Query: 61 HGRVLYVD 68
GR + V+
Sbjct: 75 DGRNVTVN 82
>ref|XP_470338.1| putative RNA binding protein [Oryza sativa (japonica
cultivar-group)] gi|40714682|gb|AAR88588.1| putative
RNA binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 205
Score = 65.9 bits (159), Expect = 2e-10
Identities = 32/72 (44%), Positives = 47/72 (64%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L++STT+E L +AF ++GN+ +A +V +K R +GFG+VTF E++ A GMNG L
Sbjct: 14 LSWSTTDESLKDAFGKFGNLTEAKVVFDKYSGRSRGFGFVTFDEKKAMEDAIEGMNGLDL 73
Query: 61 HGRVLYVDMDPP 72
GR + VD P
Sbjct: 74 DGRAITVDKAQP 85
>pir||S59529 RNA-binding glycine-rich protein-1 (RGP-1c) - wood tobacco
gi|469072|dbj|BAA03743.1| RNA-binding gricine-rich
protein-1 (RGP-1c) [Nicotiana sylvestris]
Length = 165
Score = 65.9 bits (159), Expect = 2e-10
Identities = 32/68 (47%), Positives = 48/68 (70%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
LA++TT+ L EAFSQYG V+++ I+ ++ R +GFG+VTF +E+ R A GMNG+ L
Sbjct: 13 LAWATTDRTLGEAFSQYGEVLESKIINDRETGRSRGFGFVTFGDEKSMRDAIEGMNGQDL 72
Query: 61 HGRVLYVD 68
GR + V+
Sbjct: 73 DGRNITVN 80
>gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum]
Length = 339
Score = 65.1 bits (157), Expect = 4e-10
Identities = 29/68 (42%), Positives = 45/68 (65%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L++ T E L E FSQYG V++A ++L++ R +GFG+++F EEA A M+G+ L
Sbjct: 47 LSYGTDESSLKETFSQYGEVIEARVILDRETGRSRGFGFISFPSSEEATSAMQAMDGQDL 106
Query: 61 HGRVLYVD 68
HGR + V+
Sbjct: 107 HGRRIKVN 114
>gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 65.1 bits (157), Expect = 4e-10
Identities = 29/68 (42%), Positives = 47/68 (68%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L++ T E L EAFSQYG+V++A +++++ R +GFG+++F EEA A M+G+ L
Sbjct: 47 LSYGTDESSLKEAFSQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASALQAMDGQDL 106
Query: 61 HGRVLYVD 68
HGR + V+
Sbjct: 107 HGRRIRVN 114
>gb|AAD28176.1| glycine-rich RNA-binding protein [Picea glauca]
Length = 155
Score = 64.7 bits (156), Expect = 5e-10
Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
LA+ST + L EAFS YG VV++ I+ ++ R +GFG+VTF +E+ R A MNGK+L
Sbjct: 15 LAWSTDDRSLQEAFSPYGEVVESKIISDRETGRSRGFGFVTFNDEQSMRDAIDAMNGKML 74
Query: 61 HGRVLYVD 68
GR + V+
Sbjct: 75 DGRSITVN 82
>gb|AAH54250.1| Xcirp2 protein [Xenopus laevis] gi|11761319|dbj|BAB19129.1|
cold-inducible RNA binding protein 2 [Xenopus laevis]
Length = 166
Score = 64.7 bits (156), Expect = 5e-10
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L F T EE L + FS+YG + + +V ++ KR +GFG+VTF ++A+ A + MNGK +
Sbjct: 12 LNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAV 71
Query: 61 HGRVLYVD 68
GR + VD
Sbjct: 72 DGRQIRVD 79
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.312 0.130 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,398,696
Number of Sequences: 2540612
Number of extensions: 5472961
Number of successful extensions: 18353
Number of sequences better than 10.0: 3971
Number of HSP's better than 10.0 without gapping: 3191
Number of HSP's successfully gapped in prelim test: 780
Number of HSP's that attempted gapping in prelim test: 12681
Number of HSP's gapped (non-prelim): 6056
length of query: 95
length of database: 863,360,394
effective HSP length: 71
effective length of query: 24
effective length of database: 682,976,942
effective search space: 16391446608
effective search space used: 16391446608
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC122162.5