BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121245.9 + phase: 2 /pseudo/partial
(223 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN15337.1| poly(A)-binding protein II-like [Arabidopsis thal... 293 2e-78
emb|CAB89408.1| RNA binding protein-like [Arabidopsis thaliana] ... 286 4e-76
ref|NP_850803.1| polyadenylate-binding protein family protein / ... 265 7e-70
gb|AAM47151.1| unknown protein [Arabidopsis thaliana] gi|1931078... 258 9e-68
gb|AAM61036.1| contains similarity to poly(A)-binding protein II... 258 9e-68
ref|XP_467889.1| putative poly(A) binding protein [Oryza sativa ... 253 3e-66
ref|XP_467888.1| putative poly(A) binding protein [Oryza sativa ... 253 4e-66
dbj|BAA97374.1| unnamed protein product [Arabidopsis thaliana] 241 8e-63
dbj|BAD37238.1| putative poly(A) binding protein II [Oryza sativ... 229 4e-59
gb|EAA69969.1| hypothetical protein FG10271.1 [Gibberella zeae P... 163 3e-39
gb|EAA65523.1| hypothetical protein AN1340.2 [Aspergillus nidula... 156 5e-37
gb|EAK83439.1| hypothetical protein UM02401.1 [Ustilago maydis 5... 155 6e-37
emb|CAF06158.1| probable RRM-type RNA binding protein [Neurospor... 155 1e-36
gb|EAL90278.1| RNP domain protein [Aspergillus fumigatus Af293] 155 1e-36
ref|XP_323265.1| hypothetical protein [Neurospora crassa] gi|289... 155 1e-36
gb|EAA56897.1| hypothetical protein MG07252.4 [Magnaporthe grise... 153 4e-36
emb|CAB16904.1| SPBC16E9.12c [Schizosaccharomyces pombe] gi|1911... 148 1e-34
ref|XP_393066.2| PREDICTED: similar to poly(A) binding protein I... 146 5e-34
gb|AAH73657.1| PABPII protein [Xenopus laevis] gi|11527140|gb|AA... 145 1e-33
gb|AAH45063.1| Pabpn1-prov protein [Xenopus laevis] 144 1e-33
>gb|AAN15337.1| poly(A)-binding protein II-like [Arabidopsis thaliana]
gi|10178188|dbj|BAB11662.1| poly(A)-binding protein
II-like [Arabidopsis thaliana]
gi|15238390|ref|NP_201329.1| polyadenylate-binding
protein family protein / PABP family protein
[Arabidopsis thaliana] gi|14423494|gb|AAK62429.1|
poly(A)-binding protein II-like [Arabidopsis thaliana]
Length = 220
Score = 293 bits (751), Expect = 2e-78
Identities = 152/204 (74%), Positives = 173/204 (84%), Gaps = 7/204 (3%)
Query: 23 D*DME--NDDVDMIGADNNEA-DLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPAN 79
D DME N D+DM AD++ +LD+MKKRLKEMEDEAAAL+EMQAKVEKEMG+ QDPA+
Sbjct: 20 DGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKVEKEMGA-QDPAS 78
Query: 80 ASASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVE 139
+A+Q +EEVDARS+FVGNVDYACTPE+VQQHFQ+CGTV+RVTI TDKFGQPKG+AYVE
Sbjct: 79 IAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVE 138
Query: 140 FVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPF 199
FVEVEAVQEAL LNESELHGRQLKV KRTNVPG+KQFR RR NPYMG+R R P+ P+
Sbjct: 139 FVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGRR-FNPYMGYRFRRPFMSPY 197
Query: 200 AYAPAPYGYGKIPRFRMGMRYSPY 223
Y +PYGYGK PRFR MRY PY
Sbjct: 198 MY--SPYGYGKAPRFRRPMRYMPY 219
>emb|CAB89408.1| RNA binding protein-like [Arabidopsis thaliana]
gi|28827384|gb|AAO50536.1| putative
polyadenylate-binding protein II (PAB2) [Arabidopsis
thaliana] gi|28393013|gb|AAO41941.1| putative
polyadenylate-binding protein II (PAB2) [Arabidopsis
thaliana] gi|15238140|ref|NP_196597.1|
polyadenylate-binding protein family protein / PABP
family protein [Arabidopsis thaliana]
gi|11358793|pir||T50004 RNA binding protein-like -
Arabidopsis thaliana
Length = 217
Score = 286 bits (731), Expect = 4e-76
Identities = 143/202 (70%), Positives = 168/202 (82%), Gaps = 4/202 (1%)
Query: 23 D*DMENDDVDMIGADNNEA-DLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANAS 81
D D+ + D+DM AD + +L +MK+RLKEME+EAAAL+EMQAKVEKEMG+ QDPA+ +
Sbjct: 18 DTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMA 77
Query: 82 ASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFV 141
A+Q +EEVDARS++VGNVDYACTPE+VQ HFQ+CGTVNRVTI DKFGQPKG+AYVEFV
Sbjct: 78 ANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFV 137
Query: 142 EVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAY 201
EVEAVQEAL LNESELHGRQLKV+ KRTNVPGMKQ+ P R NP MG+R R P+ PP+ Y
Sbjct: 138 EVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGR-FNPSMGYRFRRPFVPPYFY 196
Query: 202 APAPYGYGKIPRFRMGMRYSPY 223
+PYGYGK PRFR MRY PY
Sbjct: 197 --SPYGYGKAPRFRRPMRYMPY 216
>ref|NP_850803.1| polyadenylate-binding protein family protein / PABP family protein
[Arabidopsis thaliana]
Length = 202
Score = 265 bits (677), Expect = 7e-70
Identities = 133/188 (70%), Positives = 158/188 (83%), Gaps = 4/188 (2%)
Query: 23 D*DMENDDVDMIGADNNEA-DLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANAS 81
D D+ + D+DM AD + +L +MK+RLKEME+EAAAL+EMQAKVEKEMG+ QDPA+ +
Sbjct: 18 DTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMA 77
Query: 82 ASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFV 141
A+Q +EEVDARS++VGNVDYACTPE+VQ HFQ+CGTVNRVTI DKFGQPKG+AYVEFV
Sbjct: 78 ANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFV 137
Query: 142 EVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAY 201
EVEAVQEAL LNESELHGRQLKV+ KRTNVPGMKQ+ P R NP MG+R R P+ PP+ Y
Sbjct: 138 EVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGR-FNPSMGYRFRRPFVPPYFY 196
Query: 202 APAPYGYG 209
+PYGYG
Sbjct: 197 --SPYGYG 202
>gb|AAM47151.1| unknown protein [Arabidopsis thaliana] gi|19310785|gb|AAL85123.1|
unknown protein [Arabidopsis thaliana]
gi|15982733|gb|AAL09819.1| unknown protein [Arabidopsis
thaliana] gi|18423239|ref|NP_568751.1|
polyadenylate-binding protein, putative / PABP, putative
[Arabidopsis thaliana] gi|15809838|gb|AAL06847.1|
AT5g51120/MWD22_6 [Arabidopsis thaliana]
Length = 227
Score = 258 bits (659), Expect = 9e-68
Identities = 128/187 (68%), Positives = 151/187 (80%), Gaps = 9/187 (4%)
Query: 38 NNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIFV 97
++ DL+DMKKR+KE+E+EA AL+EMQAK EK+MG+ QDP+ S +EEVD+RSI+V
Sbjct: 49 SSSRDLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDPSGG-VSAAEKEEVDSRSIYV 107
Query: 98 GNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESEL 157
GNVDYACTPE+VQQHFQSCGTVNRVTI TDKFGQPKG+AYVEFVEVEAVQ +L+LNESEL
Sbjct: 108 GNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESEL 167
Query: 158 HGRQLKVTAKRTNVPGMKQFRPR-RPSNPYMGFRGRTPYAPPFAYAPAPYGYGKIPRFRM 216
HGRQ+KV+AKRTNVPGM+QFR R RP P GF P+ P PY YG++PRFR
Sbjct: 168 HGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGFMPGVPFYP-------PYAYGRVPRFRR 220
Query: 217 GMRYSPY 223
MRY PY
Sbjct: 221 PMRYRPY 227
>gb|AAM61036.1| contains similarity to poly(A)-binding protein II [Arabidopsis
thaliana]
Length = 227
Score = 258 bits (659), Expect = 9e-68
Identities = 128/187 (68%), Positives = 151/187 (80%), Gaps = 9/187 (4%)
Query: 38 NNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIFV 97
++ DL+DMKKR+KE+E+EA AL+EMQAK EK+MG+ QDP+ S +EEVD+RSI+V
Sbjct: 49 SSSRDLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDPSGG-VSAAEKEEVDSRSIYV 107
Query: 98 GNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESEL 157
GNVDYACTPE+VQQHFQSCGTVNRVTI TDKFGQPKG+AYVEFVEVEAVQ +L+LNESEL
Sbjct: 108 GNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESEL 167
Query: 158 HGRQLKVTAKRTNVPGMKQFRPR-RPSNPYMGFRGRTPYAPPFAYAPAPYGYGKIPRFRM 216
HGRQ+KV+AKRTNVPGM+QFR R RP P GF P+ P PY YG++PRFR
Sbjct: 168 HGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGFMPGVPFYP-------PYAYGRVPRFRR 220
Query: 217 GMRYSPY 223
MRY PY
Sbjct: 221 PMRYRPY 227
>ref|XP_467889.1| putative poly(A) binding protein [Oryza sativa (japonica
cultivar-group)] gi|46805690|dbj|BAD17091.1| putative
poly(A) binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 216
Score = 253 bits (646), Expect = 3e-66
Identities = 135/205 (65%), Positives = 157/205 (75%), Gaps = 9/205 (4%)
Query: 23 D*DMENDDVDMIGADNNEA---DLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPAN 79
D DM+ DVDM ++ A +LD MK+RLKEME+EAAAL++MQAKV KEM +
Sbjct: 16 DGDMDGADVDMASGGDDAAKLQELDQMKRRLKEMEEEAAALRDMQAKVAKEMQGGPPGGD 75
Query: 80 ASASQIN-REEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYV 138
SAS +E+VDARS++VGNVDYACTPE+VQQHFQ+CGTVNRVTI TDKFGQPKG+AYV
Sbjct: 76 PSASTAEAKEQVDARSVYVGNVDYACTPEEVQQHFQACGTVNRVTILTDKFGQPKGFAYV 135
Query: 139 EFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPP 198
EF+E EAVQEAL LNESELHGRQ+KV KRTNVPGMKQ RP R NPY G+ R+ AP
Sbjct: 136 EFLEQEAVQEALNLNESELHGRQIKVAPKRTNVPGMKQ-RPPRGYNPYHGYPYRSYGAPY 194
Query: 199 FAYAPAPYGYGKIPRFRMGMRYSPY 223
F PYGYG++PRFR MRY PY
Sbjct: 195 F----PPYGYGRVPRFRRPMRYRPY 215
>ref|XP_467888.1| putative poly(A) binding protein [Oryza sativa (japonica
cultivar-group)] gi|46805689|dbj|BAD17090.1| putative
poly(A) binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 212
Score = 253 bits (645), Expect = 4e-66
Identities = 135/204 (66%), Positives = 159/204 (77%), Gaps = 11/204 (5%)
Query: 23 D*DMENDDVDMIGADNNEA---DLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPAN 79
D DM+ DVDM ++ A +LD MK+RLKEME+EAAAL++MQAKV KEM DP+
Sbjct: 16 DGDMDGADVDMASGGDDAAKLQELDQMKRRLKEMEEEAAALRDMQAKVAKEMQG-GDPSA 74
Query: 80 ASASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVE 139
++A +E+VDARS++VGNVDYACTPE+VQQHFQ+CGTVNRVTI TDKFGQPKG+AYVE
Sbjct: 75 STAEA--KEQVDARSVYVGNVDYACTPEEVQQHFQACGTVNRVTILTDKFGQPKGFAYVE 132
Query: 140 FVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPF 199
F+E EAVQEAL LNESELHGRQ+KV KRTNVPGMKQ RP R NPY G+ R+ AP F
Sbjct: 133 FLEQEAVQEALNLNESELHGRQIKVAPKRTNVPGMKQ-RPPRGYNPYHGYPYRSYGAPYF 191
Query: 200 AYAPAPYGYGKIPRFRMGMRYSPY 223
PYGYG++PRFR MRY PY
Sbjct: 192 ----PPYGYGRVPRFRRPMRYRPY 211
>dbj|BAA97374.1| unnamed protein product [Arabidopsis thaliana]
Length = 267
Score = 241 bits (616), Expect = 8e-63
Identities = 118/165 (71%), Positives = 140/165 (84%), Gaps = 2/165 (1%)
Query: 38 NNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIFV 97
++ DL+DMKKR+KE+E+EA AL+EMQAK EK+MG+ QDP+ S +EEVD+RSI+V
Sbjct: 49 SSSRDLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDPSGG-VSAAEKEEVDSRSIYV 107
Query: 98 GNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESEL 157
GNVDYACTPE+VQQHFQSCGTVNRVTI TDKFGQPKG+AYVEFVEVEAVQ +L+LNESEL
Sbjct: 108 GNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESEL 167
Query: 158 HGRQLKVTAKRTNVPGMKQFRPR-RPSNPYMGFRGRTPYAPPFAY 201
HGRQ+KV+AKRTNVPGM+QFR R RP P GF P+ PP+AY
Sbjct: 168 HGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGFMPGVPFYPPYAY 212
>dbj|BAD37238.1| putative poly(A) binding protein II [Oryza sativa (japonica
cultivar-group)]
Length = 204
Score = 229 bits (584), Expect = 4e-59
Identities = 133/204 (65%), Positives = 156/204 (76%), Gaps = 21/204 (10%)
Query: 26 MENDDVDMIGADNNEA----DLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANAS 81
++ +DVDM GA +EA +LD+MK+RLKEME+EA AL+EMQ KV KEM + DP NAS
Sbjct: 15 LDGEDVDM-GAPGDEAAKMQELDEMKRRLKEMEEEANALREMQTKVAKEMQGL-DP-NAS 71
Query: 82 ASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFV 141
+S+ ++EE+DARS++VGNVDYACTPE+VQQHF SCGTVNRVTI TDKFGQPKG+AYVEF+
Sbjct: 72 SSE-SKEEMDARSVYVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFL 130
Query: 142 EVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRR--PSNPYMGFRGRTPYAPPF 199
EVEAVQEA+ LNESELHGRQ+KV KRTNVPGMKQ R R +PYM PY PF
Sbjct: 131 EVEAVQEAVKLNESELHGRQIKVAPKRTNVPGMKQPRGGRGFGGHPYM-----RPYGAPF 185
Query: 200 AYAPAPYGYGKIPRFRMGMRYSPY 223
PYGYG PRFR R PY
Sbjct: 186 Y---NPYGYG-YPRFRRPRR--PY 203
>gb|EAA69969.1| hypothetical protein FG10271.1 [Gibberella zeae PH-1]
gi|46137511|ref|XP_390447.1| hypothetical protein
FG10271.1 [Gibberella zeae PH-1]
Length = 208
Score = 163 bits (413), Expect = 3e-39
Identities = 93/187 (49%), Positives = 119/187 (62%), Gaps = 25/187 (13%)
Query: 15 LDDGVPFC------D*DMENDDVDMIGAD---NNEADLDDMKKRLKEMEDEAAALKEMQA 65
+ DG P D D E+D+ G + E ++ MK+R+ EME+EA L+EMQA
Sbjct: 6 IQDGKPMVENQHEIDHDREHDEEQEQGTEMSATEEEEITAMKRRVAEMEEEAKKLREMQA 65
Query: 66 KVEKEMGSVQDPANASASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIR 125
+E++ + D ++E +DARSIFVGNVDY+ +PED+Q HFQSCG++NRVTI
Sbjct: 66 TLEQQSAELAD---------DKESIDARSIFVGNVDYSASPEDIQGHFQSCGSINRVTIL 116
Query: 126 TDKF-GQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSN 184
DKF GQPKGYAYVEF E V +AL+LNES GR +KVT KRTNVPGM + R R
Sbjct: 117 LDKFTGQPKGYAYVEFTEPSLVAQALVLNESMFKGRSIKVTPKRTNVPGMSRGRGRG--- 173
Query: 185 PYMGFRG 191
GFRG
Sbjct: 174 ---GFRG 177
>gb|EAA65523.1| hypothetical protein AN1340.2 [Aspergillus nidulans FGSC A4]
gi|67521766|ref|XP_658944.1| hypothetical protein
AN1340_2 [Aspergillus nidulans FGSC A4]
gi|49086952|ref|XP_405477.1| hypothetical protein
AN1340.2 [Aspergillus nidulans FGSC A4]
Length = 187
Score = 156 bits (394), Expect = 5e-37
Identities = 92/194 (47%), Positives = 121/194 (61%), Gaps = 36/194 (18%)
Query: 38 NNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIFV 97
++E +++ MK+R+ EME EAA L+EMQA ++++ S+++ ++E++DARSIFV
Sbjct: 22 DDEEEIEAMKRRVAEMESEAAKLREMQATLDQQSESLKE---------DKEDIDARSIFV 72
Query: 98 GNVDYACTPEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFVEVEAVQEALLLNESE 156
GNVDY +PE++Q HFQSCG++NRVTI DKF GQPKGYAYVEF E V +AL+LNES
Sbjct: 73 GNVDYGASPEEIQAHFQSCGSINRVTILLDKFTGQPKGYAYVEFAEPSLVAQALVLNESV 132
Query: 157 LHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYAPAPYGYGKIPR--F 214
GR LKV KRTN+PGM R RGR YG G PR +
Sbjct: 133 FRGRNLKVVPKRTNLPGMSSRGRGRG-------RGR------------GYGRGGFPRGGY 173
Query: 215 RMGMR-----YSPY 223
R G R Y+PY
Sbjct: 174 RGGYRGRGRGYAPY 187
>gb|EAK83439.1| hypothetical protein UM02401.1 [Ustilago maydis 521]
gi|49071454|ref|XP_400016.1| hypothetical protein
UM02401.1 [Ustilago maydis 521]
Length = 204
Score = 155 bits (393), Expect = 6e-37
Identities = 86/165 (52%), Positives = 112/165 (67%), Gaps = 10/165 (6%)
Query: 32 DMIGADNNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVD 91
D+ + +A+++ MK+R+ EME EAA L+E+Q + G+ P ++ REEVD
Sbjct: 39 DVTAMTDEDAEIEAMKQRVAEMEAEAAKLRELQQAAGEAGGAGLHP-----TEEEREEVD 93
Query: 92 ARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFVEVEAVQEAL 150
+RSI+VGNVDY TPE+VQQHFQSCGT+NRVTI DKF G PKG+AYVEF E V A+
Sbjct: 94 SRSIYVGNVDYGATPEEVQQHFQSCGTINRVTILCDKFTGHPKGFAYVEFAEPSLVANAM 153
Query: 151 LLNESELHGRQLKVTAKRTNVPGMK---QFRPRRPSNPYMGFRGR 192
+LNES GR +KVTAKRTN+PG+ + R R P+ G RGR
Sbjct: 154 VLNESLFRGRLIKVTAKRTNMPGLSARGRGRGRGRGRPFRG-RGR 197
>emb|CAF06158.1| probable RRM-type RNA binding protein [Neurospora crassa]
gi|11359595|pir||T49743 probable rrm-type rna binding
protein [imported] - Neurospora crassa
Length = 215
Score = 155 bits (391), Expect = 1e-36
Identities = 88/188 (46%), Positives = 118/188 (61%), Gaps = 12/188 (6%)
Query: 37 DNNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIF 96
+++E ++ MK+R+ EME+EAA L+EMQA ++++ + + N+E++D+RSIF
Sbjct: 39 NDDEEEISAMKRRVAEMEEEAAKLREMQASLDQQHHELTE---------NKEDIDSRSIF 89
Query: 97 VGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFVEVEAVQEALLLNES 155
VGNVDY+ +PE++Q HFQSCG++NRVTI DKF GQPKGYAYVEF E V +AL+LNES
Sbjct: 90 VGNVDYSASPEEIQAHFQSCGSINRVTILLDKFTGQPKGYAYVEFTEPSLVAQALVLNES 149
Query: 156 ELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYAPAPYGYGKIPRFR 215
GR +KV KRTN+PGM R R GR Y P GY R R
Sbjct: 150 VFKGRNIKVVPKRTNIPGMS--RGGRGGRGSFRGGGRGGYFGGRGGFPPRGGYRGGYRGR 207
Query: 216 MGMRYSPY 223
Y+PY
Sbjct: 208 GRGGYAPY 215
>gb|EAL90278.1| RNP domain protein [Aspergillus fumigatus Af293]
Length = 215
Score = 155 bits (391), Expect = 1e-36
Identities = 94/180 (52%), Positives = 116/180 (64%), Gaps = 20/180 (11%)
Query: 46 MKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIFVGNVDYACT 105
MK+R+ EME EAA L+EMQA ++++ S+++ ++EE+DARSIFVGNVDY +
Sbjct: 54 MKRRVAEMESEAAKLREMQATLDQQSESLRE---------DKEEIDARSIFVGNVDYGAS 104
Query: 106 PEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKV 164
PE++Q HFQSCG++NRVTI DKF GQPKGYAYVEF E V +AL+LNES GR LKV
Sbjct: 105 PEEIQAHFQSCGSINRVTILLDKFTGQPKGYAYVEFAEPSLVAQALVLNESVFRGRNLKV 164
Query: 165 TAKRTNVPGMKQFRPRRPSNPYMGFR-GRTPYAPPFAYAPAPYGYGKIPRFRMGMRYSPY 223
KRTN+PGM R GFR GR Y F P GY R R G Y+PY
Sbjct: 165 VPKRTNLPGMSSRGRGRG-----GFRGGRGFYRGGF---PPRGGYRGGGRGR-GRGYAPY 215
>ref|XP_323265.1| hypothetical protein [Neurospora crassa] gi|28918678|gb|EAA28349.1|
hypothetical protein [Neurospora crassa]
Length = 419
Score = 155 bits (391), Expect = 1e-36
Identities = 88/188 (46%), Positives = 118/188 (61%), Gaps = 12/188 (6%)
Query: 37 DNNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIF 96
+++E ++ MK+R+ EME+EAA L+EMQA ++++ + + N+E++D+RSIF
Sbjct: 243 NDDEEEISAMKRRVAEMEEEAAKLREMQASLDQQHHELTE---------NKEDIDSRSIF 293
Query: 97 VGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFVEVEAVQEALLLNES 155
VGNVDY+ +PE++Q HFQSCG++NRVTI DKF GQPKGYAYVEF E V +AL+LNES
Sbjct: 294 VGNVDYSASPEEIQAHFQSCGSINRVTILLDKFTGQPKGYAYVEFTEPSLVAQALVLNES 353
Query: 156 ELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYAPAPYGYGKIPRFR 215
GR +KV KRTN+PGM R R GR Y P GY R R
Sbjct: 354 VFKGRNIKVVPKRTNIPGMS--RGGRGGRGSFRGGGRGGYFGGRGGFPPRGGYRGGYRGR 411
Query: 216 MGMRYSPY 223
Y+PY
Sbjct: 412 GRGGYAPY 419
>gb|EAA56897.1| hypothetical protein MG07252.4 [Magnaporthe grisea 70-15]
gi|39971873|ref|XP_367327.1| hypothetical protein
MG07252.4 [Magnaporthe grisea 70-15]
Length = 213
Score = 153 bits (386), Expect = 4e-36
Identities = 84/172 (48%), Positives = 112/172 (64%), Gaps = 12/172 (6%)
Query: 40 EADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIFVGN 99
+ ++ MKKR+ EME+EAA L+EMQA ++ + + S +R++VD+RSIFVGN
Sbjct: 48 QQEISAMKKRVAEMEEEAAKLREMQASLDSQ--------SQELSTESRDDVDSRSIFVGN 99
Query: 100 VDYACTPEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFVEVEAVQEALLLNESELH 158
VDY+ +PE++Q HFQSCG++NRVTI DKF GQPKG+AYVEF E V +AL+LNES
Sbjct: 100 VDYSASPEEIQAHFQSCGSINRVTILLDKFTGQPKGFAYVEFTEPSLVAQALVLNESVFK 159
Query: 159 GRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYAPAPYGYGK 210
GR +KV+ KRTN PGM + R R G GR + P Y G G+
Sbjct: 160 GRNIKVSPKRTNYPGMSRGRGRGRGR---GGFGRGGFPPRGGYRGGYRGRGR 208
>emb|CAB16904.1| SPBC16E9.12c [Schizosaccharomyces pombe]
gi|19112586|ref|NP_595794.1| hypothetical protein
SPBC16E9.12c [Schizosaccharomyces pombe 972h-]
gi|7493329|pir||T39586 rna binding protein - fission
yeast (Schizosaccharomyces pombe)
Length = 166
Score = 148 bits (373), Expect = 1e-34
Identities = 85/173 (49%), Positives = 110/173 (63%), Gaps = 18/173 (10%)
Query: 32 DMIGADNNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVD 91
D D E +L +MK+R+ EME EAA L+ MQ +++ E ++++ ++E +D
Sbjct: 3 DQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKESID 53
Query: 92 ARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFVEVEAVQEAL 150
A+S++VGNVDY+ TPE++Q HF SCG+VNRVTI DKF G PKG+AY+EF E V AL
Sbjct: 54 AQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
Query: 151 LLNESELHGRQLKVTAKRTNVPGMKQFRPR-------RPSNPYMG-FRGRTPY 195
LLN S LH R LKVT KRTNVPGM + R R R Y G RG PY
Sbjct: 114 LLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166
>ref|XP_393066.2| PREDICTED: similar to poly(A) binding protein II [Apis mellifera]
Length = 228
Score = 146 bits (368), Expect = 5e-34
Identities = 90/203 (44%), Positives = 122/203 (59%), Gaps = 16/203 (7%)
Query: 32 DMIGADNNEADLDD-----MKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQIN 86
D + + NEA++DD +K R++EME+EA LK++Q++V+K+M P S ++
Sbjct: 31 DGVKRELNEANIDDPELEAIKARVREMEEEAEKLKQLQSEVDKQMNMGSPPGITSPLNMS 90
Query: 87 RE---EVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFVE 142
E EVD RSI+VGNVDY T E+++QHF CG+VNRVTI +KF G PKG+AY+EF E
Sbjct: 91 LEDKMEVDNRSIYVGNVDYGATAEELEQHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAE 150
Query: 143 VEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYA 202
++VQ A+ ++ES GRQ+KV KRTN PG+ R P G RG A
Sbjct: 151 RDSVQTAMAMDESMFRGRQIKVMPKRTNRPGL-SVTNRGP----RGTRGYRGIARGIIRG 205
Query: 203 PAPYGYGKIPRFRMGMR--YSPY 223
A +GY I R R R Y PY
Sbjct: 206 SAYFGYRPIRRPRSYRRGYYMPY 228
>gb|AAH73657.1| PABPII protein [Xenopus laevis] gi|11527140|gb|AAG36902.1| poly(A)
binding protein II [Xenopus laevis]
gi|38641397|gb|AAR26262.1| nuclear poly(A) binding
protein 2 [Xenopus laevis]
Length = 296
Score = 145 bits (365), Expect = 1e-33
Identities = 87/209 (41%), Positives = 119/209 (56%), Gaps = 8/209 (3%)
Query: 23 D*DMENDDVDMIGADNN--EADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANA 80
D ++E ++ + D + +L+ +K R++EME+EA LKE+Q +VEK+M P NA
Sbjct: 88 DEELEEEEPGELTGDQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNA 147
Query: 81 SASQINREE---VDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYA 136
++ EE DARSI+VGNVDY T E+++ HF CG+VNRVTI DKF G PKG+A
Sbjct: 148 GPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFA 207
Query: 137 YVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYA 196
Y+EF + E+V+ +L L+ES GRQ+KV KRTN PG+ P Y
Sbjct: 208 YIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSR 267
Query: 197 PPF--AYAPAPYGYGKIPRFRMGMRYSPY 223
F Y P P G R R Y+PY
Sbjct: 268 SRFYSGYTPRPRGRVYRGRARATSWYTPY 296
>gb|AAH45063.1| Pabpn1-prov protein [Xenopus laevis]
Length = 295
Score = 144 bits (364), Expect = 1e-33
Identities = 87/209 (41%), Positives = 119/209 (56%), Gaps = 8/209 (3%)
Query: 23 D*DMENDDVDMIGADNN--EADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANA 80
D ++E ++ + D + +L+ +K R++EME+EA LKE+Q +VEK+M P NA
Sbjct: 87 DEELEEEEPGELTGDQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNA 146
Query: 81 SASQINREE---VDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYA 136
++ EE DARSI+VGNVDY T E+++ HF CG+VNRVTI DKF G PKG+A
Sbjct: 147 GPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFA 206
Query: 137 YVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYA 196
Y+EF + E+V+ +L L+ES GRQ+KV KRTN PG+ P Y
Sbjct: 207 YIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSR 266
Query: 197 PPF--AYAPAPYGYGKIPRFRMGMRYSPY 223
F Y P P G R R Y+PY
Sbjct: 267 SRFYSGYTPRPRGRVYRGRARATSWYTPY 295
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 385,911,459
Number of Sequences: 2540612
Number of extensions: 15873800
Number of successful extensions: 77983
Number of sequences better than 10.0: 3163
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 2217
Number of HSP's that attempted gapping in prelim test: 74958
Number of HSP's gapped (non-prelim): 4606
length of query: 223
length of database: 863,360,394
effective HSP length: 123
effective length of query: 100
effective length of database: 550,865,118
effective search space: 55086511800
effective search space used: 55086511800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)
Medicago: description of AC121245.9