BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121245.12 + phase: 0 /pseudo
(136 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thali... 83 2e-15
gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D8... 83 2e-15
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 82 2e-15
ref|NP_198321.2| hypothetical protein [Arabidopsis thaliana] 82 2e-15
pir||B96652 protein F23N19.5 [imported] - Arabidopsis thaliana g... 82 2e-15
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 82 4e-15
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 80 1e-14
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 78 4e-14
ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thal... 78 5e-14
ref|NP_850866.1| reverse transcriptase-related [Arabidopsis thal... 77 9e-14
dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like ... 75 4e-13
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g... 75 4e-13
ref|NP_175165.1| expressed protein [Arabidopsis thaliana] 74 8e-13
ref|NP_680382.1| hypothetical protein [Arabidopsis thaliana] 72 2e-12
ref|NP_680665.1| hypothetical protein [Arabidopsis thaliana] 72 4e-12
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 71 6e-12
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 70 1e-11
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 69 2e-11
emb|CAB81249.1| hypothetical protein [Arabidopsis thaliana] gi|3... 67 7e-11
dbj|BAD45551.1| hypothetical protein [Oryza sativa (japonica cul... 67 9e-11
>gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thaliana]
gi|18394475|ref|NP_564020.1| hypothetical protein
[Arabidopsis thaliana] gi|9665118|gb|AAF97302.1|
Hypothetical protein [Arabidopsis thaliana]
Length = 272
Score = 82.8 bits (203), Expect = 2e-15
Identities = 45/116 (38%), Positives = 65/116 (55%), Gaps = 1/116 (0%)
Query: 17 VRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSAI 76
+ W+PP + K+N DG+S GNP A GG++R+ GNW +GFS + G + AEL
Sbjct: 102 IAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGA 161
Query: 77 WKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVV 132
+ GL +AW+ G + ME DS++ + L T D HP + L+ L L S W V
Sbjct: 162 YYGLNIAWERGVTQLEMEIDSEMVVG-FLRTGIDDSHPLSFLVRLCHGLLSKDWSV 216
>gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D86310 protein
F1L3.4 [imported] - Arabidopsis thaliana
Length = 253
Score = 82.8 bits (203), Expect = 2e-15
Identities = 45/116 (38%), Positives = 65/116 (55%), Gaps = 1/116 (0%)
Query: 17 VRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSAI 76
+ W+PP + K+N DG+S GNP A GG++R+ GNW +GFS + G + AEL
Sbjct: 83 IAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGA 142
Query: 77 WKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVV 132
+ GL +AW+ G + ME DS++ + L T D HP + L+ L L S W V
Sbjct: 143 YYGLNIAWERGVTQLEMEIDSEMVVG-FLRTGIDDSHPLSFLVRLCHGLLSKDWSV 197
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 82.4 bits (202), Expect = 2e-15
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Query: 17 VRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSAI 76
+ W P E ++ +N DG+S GNP A GG++R+ G+W+ GF+ + G + AEL +
Sbjct: 506 IAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGV 565
Query: 77 WKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVV 132
+ GL +AW+ G+R + +E DS + + L + D HP A L+ L S W+V
Sbjct: 566 YYGLVVAWERGWRRVRLEVDSALVVG-FLQSGIGDSHPLAFLVRLCHGFISKDWIV 620
>ref|NP_198321.2| hypothetical protein [Arabidopsis thaliana]
Length = 175
Score = 82.4 bits (202), Expect = 2e-15
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 16 QVRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSA 75
QVRW+ P + K+N DG+S GNP A GG LRN G W GF+ + GR + AEL
Sbjct: 4 QVRWSKPSLGWCKLNTDGASHGNPGLAIAGGALRNEYGEWCFGFALNIGRCSAPLAELWG 63
Query: 76 IWKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVV 132
++ GL +AWD G + +E DS++ + L T HP + L+ + S W+V
Sbjct: 64 VYYGLFMAWDRGITRLELEVDSEMVVG-FLRTGIGSSHPLSFLVRMCHGFLSRDWIV 119
>pir||B96652 protein F23N19.5 [imported] - Arabidopsis thaliana
gi|6630448|gb|AAF19536.1| F23N19.5 [Arabidopsis
thaliana]
Length = 233
Score = 82.4 bits (202), Expect = 2e-15
Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 16 QVRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSA 75
QVRW+ P + K+N DG+S GNP A GG LRN G W GF+ + GR AEL
Sbjct: 62 QVRWSKPSLGWCKLNTDGASHGNPGLATAGGALRNEYGEWCFGFALNIGRCLAPLAELWG 121
Query: 76 IWKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVV 132
++ GL +AWD G + +E DS++ + L T HP + L+ + S W+V
Sbjct: 122 VYYGLFMAWDRGITRLELEVDSEMVVG-FLRTGIGSSHPLSFLVRMCHGFLSRDWIV 177
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412100|pir||F84611 hypothetical protein
At2g22350 [imported] - Arabidopsis thaliana
gi|15227192|ref|NP_179822.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 321
Score = 81.6 bits (200), Expect = 4e-15
Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Query: 17 VRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSAI 76
V W P + ++K+N DG+S GNP A GG+LR++ G WI GF+ + G + AEL +
Sbjct: 151 VSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGV 210
Query: 77 WKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVV 132
+ GL +AW G R + +E DS++ + L T D HP + LL L S W+V
Sbjct: 211 YYGLFIAWGRGARRVELEVDSKMVVG-FLTTGIADSHPLSFLLRLCYDFLSKGWIV 265
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 80.1 bits (196), Expect = 1e-14
Identities = 43/127 (33%), Positives = 65/127 (50%), Gaps = 1/127 (0%)
Query: 6 GPTNKGHVICQVRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGR 65
G V ++W PP + K+N DG+S GNP A GG++R+ G W GF + G
Sbjct: 439 GAMRGSEVEMSIKWTPPSTGWFKLNTDGASRGNPGLATAGGVVRDGEGQWCVGFVLNIGI 498
Query: 66 ATNLFAELSAIWKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKL 125
+ AEL ++ GL +AW+ G R + +E DS + + L +D HP + L+ L
Sbjct: 499 CSAPLAELWGVYYGLHIAWERGIRRLELEVDSTLVVG-FLQAGIEDSHPLSFLVRLCYGF 557
Query: 126 SSLPWVV 132
S W+V
Sbjct: 558 ISRDWIV 564
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 78.2 bits (191), Expect = 4e-14
Identities = 39/116 (33%), Positives = 64/116 (54%), Gaps = 1/116 (0%)
Query: 17 VRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSAI 76
+RW P + ++KI DG+S GN A GG +RN +G W+ GF+ + G AEL
Sbjct: 1061 IRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGA 1120
Query: 77 WKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVV 132
+ GL +AWD G+R + ++ D ++ + L T + HP + L+ L + + W+V
Sbjct: 1121 YYGLLIAWDKGFRRVELDLDCKLVVG-FLSTGVSNAHPLSFLVRLCQGFFTRDWLV 1175
>ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 396
Score = 77.8 bits (190), Expect = 5e-14
Identities = 39/117 (33%), Positives = 67/117 (56%), Gaps = 1/117 (0%)
Query: 16 QVRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSA 75
Q+ W P E + +N DG+S GNP A G++R+ G+W+ GF+ + G + AEL
Sbjct: 225 QIVWKKPSERWATVNTDGASHGNPGFATARGVVRDGEGSWLGGFALNIGVCSAPLAELWG 284
Query: 76 IWKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVV 132
++ GL AW+ G R +++E +S++ + L + +D HP A L+ L + + W+V
Sbjct: 285 VYYGLVTAWERGVRRVVLEVESKLVVG-FLQSGIRDTHPLAFLVRLCQGFIARDWLV 340
>ref|NP_850866.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 411
Score = 77.0 bits (188), Expect = 9e-14
Identities = 42/118 (35%), Positives = 62/118 (51%), Gaps = 1/118 (0%)
Query: 17 VRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSAI 76
+ W P ++K+N DG+S GNP A GG+LR+ GNW GF+ + GR + AEL +
Sbjct: 242 IGWGSPGVGWVKLNTDGASRGNPGLATAGGVLRDEEGNWRGGFAANIGRCSAPLAELWEV 301
Query: 77 WKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVVYL 134
+ GL AW + + +E DS++ + L T D HP L+ L S W V +
Sbjct: 302 YYGLYFAWAIRIPQLELEVDSEIVVG-FLKTGISDTHPLFFLVRLCYGFLSKDWRVQI 358
>dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 308
Score = 74.7 bits (182), Expect = 4e-13
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 17 VRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSAI 76
+ W P ++K+N DG+S GNP A GG+LR+ G W GFS + GR + AEL +
Sbjct: 138 IGWVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGV 197
Query: 77 WKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVVYLV 135
+ GL AW+ + +E DS+ A+ L T D HP + L+ L W+V +V
Sbjct: 198 YYGLYFAWEKKVPRVELEVDSE-AIVGFLKTGISDSHPLSFLVRLCHNFLQKDWLVRIV 255
>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
thaliana]
Length = 1055
Score = 74.7 bits (182), Expect = 4e-13
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 17 VRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSAI 76
+ W P ++K+N DG+S GNP A GG+LR+ G W GFS + GR + AEL +
Sbjct: 559 IGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGV 618
Query: 77 WKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVVYLV 135
+ GL AW+ + +E DS+V + L T D HP + L+ L W+V +V
Sbjct: 619 YYGLYFAWEKKVPRVELEVDSEVIVG-FLKTGISDSHPLSFLVRLCHGFLQKDWLVRIV 676
>ref|NP_175165.1| expressed protein [Arabidopsis thaliana]
Length = 259
Score = 73.9 bits (180), Expect = 8e-13
Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 27 IKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSAIWKGLQLAWDL 86
+KIN DG+S GNP A GG+L++N G W GFS + GR++ AEL + GL LAW+
Sbjct: 101 LKINTDGASRGNPGLATAGGVLQDNEGRWCGGFSLNIGRSSAPMAELWGAYYGLYLAWER 160
Query: 87 GYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVV 132
I +E DS++ + L T D HP + L+ L S W V
Sbjct: 161 KSSHIELEVDSEIVVG-FLKTGISDHHPLSFLVRLCHGFISKDWRV 205
>ref|NP_680382.1| hypothetical protein [Arabidopsis thaliana]
Length = 258
Score = 72.4 bits (176), Expect = 2e-12
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 17 VRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSAI 76
+ W P ++K+N DG+S GNP A GG+LR+ G W GFS + GR + AEL +
Sbjct: 138 IGWVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGV 197
Query: 77 WKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVVYL 134
+ GL AW+ + +E DS+ A+ L T D HP + L+ L W + L
Sbjct: 198 YYGLYFAWEKKVPRVELEVDSE-AIVGFLKTGISDSHPLSFLVRLCHNFLQKDWRILL 254
>ref|NP_680665.1| hypothetical protein [Arabidopsis thaliana]
Length = 214
Score = 71.6 bits (174), Expect = 4e-12
Identities = 39/116 (33%), Positives = 62/116 (52%), Gaps = 1/116 (0%)
Query: 17 VRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSAI 76
+ W+ E + K+N DG+S GNP A GG+LR + G W GF+ + G + AEL +
Sbjct: 44 ISWSRLSEGWCKLNTDGASRGNPGLAAAGGVLRESNGEWRRGFAINIGICSAPLAELWGV 103
Query: 77 WKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVV 132
+ GL +AW+ + +E DS+V + L T + HP + L+ + S W+V
Sbjct: 104 YYGLFMAWECKVSQLELEVDSEVVVG-FLRTGISESHPLSFLVRMCYGFISRDWIV 158
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
gi|25407930|pir||H84677 hypothetical protein At2g27870
[imported] - Arabidopsis thaliana
gi|15226268|ref|NP_180354.1| hypothetical protein
[Arabidopsis thaliana]
Length = 314
Score = 70.9 bits (172), Expect = 6e-12
Identities = 39/116 (33%), Positives = 61/116 (51%), Gaps = 1/116 (0%)
Query: 17 VRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSAI 76
+ W+ P E + K+N DG+S GNP A GG+LR+ G W GF+ + G + AEL +
Sbjct: 144 IAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGV 203
Query: 77 WKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVV 132
+ GL +AW+ + +E DS++ + L + HP + L+ L S W V
Sbjct: 204 YYGLYIAWERRVTRLEIEVDSEIVVG-FLKIGINEVHPLSFLVRLCHDFISRDWRV 258
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411326|pir||C84488 hypothetical protein
At2g07730 [imported] - Arabidopsis thaliana
Length = 970
Score = 69.7 bits (169), Expect = 1e-11
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 17 VRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSAI 76
+RW P + ++K+ DG+S G+ A G + N +G W+ GF+ + G AEL
Sbjct: 800 IRWKAPSDRWVKLTTDGASRGHQGLAAASGAILNLQGEWLGGFALNIGSCDAPLAELWGA 859
Query: 77 WKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSLIRKLSSLPWVV 132
+ GL +AWD G+R + + DS++ + L T HP + L+ L + + W+V
Sbjct: 860 YYGLLIAWDKGFRRVELNLDSELVVG-FLSTGISKAHPLSFLVRLCQGFFTRDWLV 914
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
Length = 947
Score = 68.9 bits (167), Expect = 2e-11
Identities = 37/105 (35%), Positives = 59/105 (55%), Gaps = 1/105 (0%)
Query: 17 VRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSAI 76
V W PP +++K+N DG+S GN A GG+LR+ G+W GF+ G + AEL +
Sbjct: 839 VAWKPPDGEWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFALDIGVCSAPLAELWGV 898
Query: 77 WKGLQLAWDLGYRSIIMESDSQVALDLILDTKQKDFHPHASLLSL 121
+ GL +AW+ + + +E DS++ + L T D H + L+ L
Sbjct: 899 YYGLYMAWERRFTRVELEVDSELVVG-FLTTGISDTHSLSFLVRL 942
>emb|CAB81249.1| hypothetical protein [Arabidopsis thaliana]
gi|3402761|emb|CAA20207.1| hypothetical protein
[Arabidopsis thaliana] gi|3080386|emb|CAA18706.1|
hypothetical protein [Arabidopsis thaliana]
gi|7485719|pir||T05150 hypothetical protein F18E5.40 -
Arabidopsis thaliana
Length = 229
Score = 67.4 bits (163), Expect = 7e-11
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 16 QVRWNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSA 75
+V W P IK+N DGS G A GG+ RN++ ++ G+S S G AT+ AE +A
Sbjct: 60 KVVWKKPENGRIKLNFDGSR-GREGQASIGGVFRNHKAEFLLGYSESIGEATSTMAEFAA 118
Query: 76 IWKGLQLAWDLGYRSIIMESDSQVALDLI 104
+ +GL+LA + G + +E D+++ +D+I
Sbjct: 119 LKRGLELALENGLTDLWLEGDAKIIMDII 147
>dbj|BAD45551.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 240
Score = 67.0 bits (162), Expect = 9e-11
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 19 WNPPPEDFIKINVDGSSFGNPDNAGFGGLLRNNRGNWIHGFSGSCGRATNLFAELSAIWK 78
W P E ++K+N DGSS + A GG+ R++ G ++ G++ G AT+ AEL+A+ +
Sbjct: 79 WRKPEEGWMKLNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALRR 138
Query: 79 GLQLAWDLGYRSIIMESDSQVALDLILD 106
GL+LA G+R + E DS+ +D++ D
Sbjct: 139 GLELAVRNGWRRVWAEGDSKAVVDVVCD 166
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.140 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 260,909,650
Number of Sequences: 2540612
Number of extensions: 10336538
Number of successful extensions: 20380
Number of sequences better than 10.0: 518
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 20017
Number of HSP's gapped (non-prelim): 530
length of query: 136
length of database: 863,360,394
effective HSP length: 112
effective length of query: 24
effective length of database: 578,811,850
effective search space: 13891484400
effective search space used: 13891484400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Medicago: description of AC121245.12