BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121242.1 + phase: 0 /pseudo
(403 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP44598.1| putative retrotransposon gag protein [Oryza sativ... 191 3e-47
gb|AAP52718.1| hypothetical protein [Oryza sativa (japonica cult... 190 6e-47
ref|XP_475041.1| OSJNBa0042F21.11 [Oryza sativa (japonica cultiv... 184 4e-45
gb|AAF63128.1| Similar to Athila ORF 1 [Arabidopsis thaliana] 184 5e-45
gb|AAB18645.1| unknown [Hordeum vulgare] gi|7489374|pir||T06196 ... 180 8e-44
emb|CAB81142.1| AT4g08050 [Arabidopsis thaliana] gi|5724774|gb|A... 179 2e-43
gb|AAF63125.1| Similar to Athila ORF 1 [Arabidopsis thaliana] gi... 177 5e-43
gb|AAD15357.1| putative Athila retroelement ORF1 protein [Arabid... 176 9e-43
emb|CAA57397.1| unnamed protein product [Arabidopsis thaliana] g... 176 1e-42
gb|AAX95991.1| Transposable element protein, putative [Oryza sat... 174 6e-42
gb|AAF67381.1| Hypothetical protein T15F17.m [Arabidopsis thaliana] 172 2e-41
ref|NP_909568.1| hypothetical protein [Oryza sativa] gi|14018108... 170 6e-41
emb|CAE75954.1| B1159F04.17 [Oryza sativa (japonica cultivar-gro... 168 2e-40
gb|AAX95928.1| Transposable element protein, putative [Oryza sat... 168 3e-40
gb|AAD19759.1| putative Athila retroelement ORF1 protein [Arabid... 167 5e-40
gb|AAP51916.1| putative polyprotein [Oryza sativa (japonica cult... 167 5e-40
gb|AAM15150.1| putative Athila retroelement ORF1 protein [Arabid... 167 7e-40
gb|AAF67369.1| Hypothetical protein T15F17.a [Arabidopsis thaliana] 166 1e-39
gb|AAM15284.1| putative Athila retroelement ORF1 protein [Arabid... 166 2e-39
emb|CAB81134.1| putative athila transposon protein [Arabidopsis ... 166 2e-39
>gb|AAP44598.1| putative retrotransposon gag protein [Oryza sativa (japonica
cultivar-group)] gi|34896534|ref|NP_909611.1| putative
retrotransposon gag protein [Oryza sativa (japonica
cultivar-group)]
Length = 697
Score = 191 bits (485), Expect = 3e-47
Identities = 115/303 (37%), Positives = 163/303 (52%), Gaps = 19/303 (6%)
Query: 1 MAERTLKEYATPSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISS 60
MA +TL+E+ PS + AI + +F++K +L+ + Q + F G P ED N H+
Sbjct: 1 MANKTLREFIAPSVDNV-AIGPQVNIGDVDFDLKSSLITMAQASPFCGKPNEDANAHLQQ 59
Query: 61 FLRLSG--TIKE-NQEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPP 117
FL + TIK + VRL LFPFSL R WF++ + +WD AFL++FFP
Sbjct: 60 FLEICSMYTIKGVSPNTVRLRLFPFSLLRRVKQWFYA-NCAAANTWDKCSMAFLSKFFPM 118
Query: 118 SKTAKLRDQITRFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMS 177
KT LR +I+ F Q ES+ EAWER +E + CPHHG++ WLI+ FYNGL+ ++
Sbjct: 119 GKTNALRGRISSFQQTMDESIPEAWERLQEYVAACPHHGMDDWLILQNFYNGLTPMSRDH 178
Query: 178 VDAAAGGALMNKNYTEAYALIEDMAQNHYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAA 237
+DAAAGGA +K A IE M N W+ ER T ++ G++ V E L A
Sbjct: 179 LDAAAGGAFFSKTVQGAVEFIEKMVSN-MGWSEERLQT------RQRGMHTVKETELLPA 231
Query: 238 KVEALTQKI---EKLNVKAVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQ 294
K++ L +++ EK+ V + CEVCG TGH G +C E+ Y N
Sbjct: 232 KLDLLMKRLDDHEKMPQGTVKALDSHVTCEVCGDTGHPGNNC----PETREEAMYMGNNN 287
Query: 295 GMR 297
G R
Sbjct: 288 GYR 290
>gb|AAP52718.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37532258|ref|NP_920431.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
gi|20279482|gb|AAM18762.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 412
Score = 190 bits (483), Expect = 6e-47
Identities = 134/412 (32%), Positives = 200/412 (48%), Gaps = 36/412 (8%)
Query: 1 MAERTLKEYATPSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISS 60
MA++TL+E+ATPS + AI + +F++K +L+ + Q + F P ED N +
Sbjct: 1 MADKTLREFATPSADNV-AIGPQINMGDVDFDLKSSLIKMAQASPFCDKPNEDANAPLQQ 59
Query: 61 FLRLSGTIK---ENQEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPP 117
FL + T + +A++L LFPFSL +A WF++ I +WD AF ++FFP
Sbjct: 60 FLEICNTYAIKGVSPDAIKLRLFPFSLIGKAKRWFYANRA-MINTWDKCSTAFPSKFFPM 118
Query: 118 SKTAKLRDQITRFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMS 177
KT LR +I+ F Q ES+ EAWER +E + +CPHHG++ WLI+ FYNGL+ ++
Sbjct: 119 GKTNALRGRISSFQQTRDESIPEAWERLQEYVAVCPHHGMDDWLILQNFYNGLTLMSRDH 178
Query: 178 VDAAAGGALMNKNYTEAYALIEDMAQNHYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAA 237
+DAAAGGA +K A LIE M N W+ ER T + G++ V E LAA
Sbjct: 179 LDAAAGGAFFSKTVRGAIDLIEKMVSN-MGWSEERLQT------HQQGMHTVKETEMLAA 231
Query: 238 KVEALTQKI---EKLNVKAVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQ 294
K++ L +++ +K V + CEVCG TGH G D E + N
Sbjct: 232 KLDLLMKRLDDHDKRPQGTVKALDSHVTCEVCGSTGHSGNDF---LETREEAMYMGSNNN 288
Query: 295 GMRPN---QNFYKNPQGSYGQAAP------PGYTNNQRVAQKSSLEILLENCIANQNKNL 345
G RP Q + N P NN+R ++ L E C NL
Sbjct: 289 GYRPQGVIQKIHINVPLLDAMQVPTYARYLKDILNNKRPLPTMEVDKLTEQC-----SNL 343
Query: 346 QELKNQTGFLNDSLSPHTPKCLRPKSPKWPNKWPPLLKHQESFLVNLKQTPK 397
+ + + +PH + + + PK + L+K ++FL PK
Sbjct: 344 RTEQCSMVRIKYGPNPHNIQVVEVEPPKTYS----LVKFMQNFLEKETTMPK 391
>ref|XP_475041.1| OSJNBa0042F21.11 [Oryza sativa (japonica cultivar-group)]
gi|38347309|emb|CAE02304.2| OSJNBa0042F21.11 [Oryza
sativa (japonica cultivar-group)]
Length = 920
Score = 184 bits (467), Expect = 4e-45
Identities = 116/295 (39%), Positives = 155/295 (52%), Gaps = 30/295 (10%)
Query: 46 FSGSPTEDPNLHISSFLRLSG--TIKE-NQEAVRLHLFPFSLRDRASAWFHSLEVGSITS 102
F G P ED N H+ FL + TIK + +AVRL LFPFSL RA WF++ +I +
Sbjct: 268 FCGKPNEDANAHLLQFLEICSMYTIKGVSPDAVRLRLFPFSLLRRAKQWFYA-NCAAINT 326
Query: 103 WDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLI 162
WD +FL++FFP KT LR +I+RF Q ES+ EAWER +E + CPHHG++ WLI
Sbjct: 327 WDKCSTSFLSKFFPIGKTNALRGRISRFQQTRDESIPEAWERLQEYVAACPHHGMDDWLI 386
Query: 163 VHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYALIEDMAQNHYQWTNERAVTTPTPFKK 222
+ FYNGL+ ++ +DAAAGGA +K A LIE M N W+ ER T +
Sbjct: 387 LQNFYNGLTLMSRDHLDAAAGGAFFSKTVQGAVELIEKMVSN-TGWSKERLQT------R 439
Query: 223 EAGIYEVSEYNHLAAKVEALTQKI---EKLNVKAVPPSSASPPCEVCGITGHIGVDCQLG 279
+ G++ V E LAAK++ L + + EK V + CEVCG TGH G DC
Sbjct: 440 QRGMHTVKETELLAAKLDLLMKCLDDHEKRPQGTVKALDSHVTCEVCGGTGHSGNDC--- 496
Query: 280 SAANIEQLNYAQYNQGMRPNQNFYKNPQGSYGQAAP----PGYTNNQRVAQKSSL 330
+ + M +N PQG G P PG NN + + SL
Sbjct: 497 ---------LETHEEAMYMGKNNEYRPQGGEGWNQPRPYYPGGNNNGNFSNQPSL 542
>gb|AAF63128.1| Similar to Athila ORF 1 [Arabidopsis thaliana]
Length = 780
Score = 184 bits (466), Expect = 5e-45
Identities = 110/304 (36%), Positives = 159/304 (52%), Gaps = 32/304 (10%)
Query: 12 PSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN 71
P +A IV P + NNFEIK L++++Q N+F G P EDP H+ +F R K N
Sbjct: 20 PRNHHQRAGIVPPLIQNNNFEIKSGLISMIQSNKFHGLPMEDPLDHLDNFDRFCSLTKIN 79
Query: 72 ---QEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQIT 128
+++ +L LFPFSL D A W +L V S+ +WDD ++AFLA+FF S+TA+LR++I+
Sbjct: 80 GVSEDSFKLRLFPFSLGDEAHLWEKTLLVDSVDTWDDCKKAFLAKFFSNSRTARLRNEIS 139
Query: 129 RFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMN 188
FNQK+ ES EAWERFK CPHHG +K ++ T Y G +M +D + G +N
Sbjct: 140 GFNQKNSESFAEAWERFKRYSTQCPHHGFKKASLLSTLYRGALPKIRMLLDTTSNGNFLN 199
Query: 189 KNYTEAYALIEDMAQN------HYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEAL 242
K+ E + L+E++AQ+ Y TN + + KKE ++AL
Sbjct: 200 KDVAEGWELVENLAQSDGNYNEDYDRTNRGSSDSEDRHKKE---------------IKAL 244
Query: 243 TQKIEKLNVKAVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRPNQNF 302
KI+KL + + V IT Q G +E+++Y Q G N
Sbjct: 245 NDKIDKLVL--------AQQRNVHYITEEELTQLQEGENLTVEEVSYLQNQGGYNKGFNN 296
Query: 303 YKNP 306
YK P
Sbjct: 297 YKPP 300
>gb|AAB18645.1| unknown [Hordeum vulgare] gi|7489374|pir||T06196 hypothetical
protein - barley
Length = 337
Score = 180 bits (456), Expect = 8e-44
Identities = 103/302 (34%), Positives = 162/302 (53%), Gaps = 21/302 (6%)
Query: 22 VYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKE---NQEAVRLH 78
+ P ++EI ALLNLV + QFSG P+ED H+++F+ L K+ + + ++L
Sbjct: 23 IAPATNAESYEINAALLNLVMKEQFSGLPSEDVASHLNTFIELCDMQKKKDVDNDVIKLK 82
Query: 79 LFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGESL 138
LFPFSLRDRA WF SL SI SWD + A+++++FPP+K LR+ I F Q D E +
Sbjct: 83 LFPFSLRDRAKTWFSSLPKSSIDSWDKCKDAYISKYFPPAKIISLRNDIMNFKQLDHEHV 142
Query: 139 YEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYALI 198
+AWER K M+R CP +GL W+I+ FY GL++ ++ +D+A GG M EA L+
Sbjct: 143 AQAWERMKLMIRNCPANGLSLWMIIQIFYAGLNFASRNILDSATGGTFMEITLGEATKLL 202
Query: 199 EDMAQNHYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEKLNVKAVPPSS 258
+++ N+ QW ER+ T+ KK ++ + E N L++K++ L + ++ P
Sbjct: 203 DNIMTNYSQWHTERSPTS----KK---VHVIEEINSLSSKMDELMNLVAS---RSAPLDP 252
Query: 259 ASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRP-----NQNF---YKNPQGSY 310
P + + ++ N N + N RP + NF Y N G+Y
Sbjct: 253 NDMPLSSLIESSNASLEVNFVGRNNFGNNNAFRGNYVPRPFPSNSSNNFGNSYNNTHGNY 312
Query: 311 GQ 312
+
Sbjct: 313 NR 314
>emb|CAB81142.1| AT4g08050 [Arabidopsis thaliana] gi|5724774|gb|AAD48078.1| contains
similarity to retrotransposons; may be a pseudogene
[Arabidopsis thaliana] gi|25354718|pir||C85079
hypothetical protein AT4g08050 [imported] - Arabidopsis
thaliana
Length = 1428
Score = 179 bits (453), Expect = 2e-43
Identities = 114/350 (32%), Positives = 177/350 (50%), Gaps = 26/350 (7%)
Query: 21 IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
I P + NNFEIK L++++Q N+F G P EDP H+ F RL K N ++ +L
Sbjct: 29 IAPPAIQNNNFEIKSGLISMIQGNKFHGLPMEDPLDHLDEFDRLCNLTKINGVSEDGFKL 88
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
LFPFSL D+A W +L SIT+WDD ++AFL++FF ++TA+LR++I F+QK GES
Sbjct: 89 RLFPFSLGDKAHIWEKNLSHDSITTWDDYKKAFLSKFFSNARTARLRNEIYGFSQKTGES 148
Query: 138 LYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYAL 197
EAWERFK CPHH K ++ T Y G+ +M +D A+ G NK+ E + L
Sbjct: 149 FCEAWERFKGYTNQCPHHSFTKASLLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGWEL 208
Query: 198 IEDMAQN--HYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEKL---NVK 252
+E++AQ+ +Y +R V S+ H +++AL K++++ K
Sbjct: 209 VENLAQSDGNYNEDCDRTVRGTAD----------SDDKH-RKEIKALNDKLDRILLSQQK 257
Query: 253 AVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRPNQNFYKNPQGSYGQ 312
V +V G+ + L + + YNQG P Q F QG+Y
Sbjct: 258 HVHFLVDDEQYQVQDGEGNQLEEVYLPQQKQGQNKPFVLYNQGFVPKQQF----QGNYQP 313
Query: 313 AAPPGYTNNQ---RVAQKSSLEILLENCIANQNKNLQELKNQTGFLNDSL 359
PPG+ Q A + ++ +++ + Q + E+ + L+ L
Sbjct: 314 PPPPGFVTQQNQCHAAPDAKMKQMVKQLLQGQASSSMEIAKKLSELHHKL 363
>gb|AAF63125.1| Similar to Athila ORF 1 [Arabidopsis thaliana]
gi|25354973|pir||A96501 hypothetical protein F2J6.11
[imported] - Arabidopsis thaliana
Length = 823
Score = 177 bits (449), Expect = 5e-43
Identities = 120/370 (32%), Positives = 176/370 (47%), Gaps = 61/370 (16%)
Query: 12 PSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN 71
P +A IV P + NNFEIK L++++Q N+F G P EDP H+ +F RL K N
Sbjct: 56 PRNHHQRAGIVPPPIQNNNFEIKSGLISMIQSNKFHGLPMEDPLDHLDNFDRLCSLTKIN 115
Query: 72 ---QEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQIT 128
+++ +L LFPFSL D+A W +L V S+ + DD ++AFLA+FF S+TA+LR++I+
Sbjct: 116 GVSEDSFKLRLFPFSLGDKAHLWEKTLPVDSVDTLDDCKKAFLAKFFSNSRTARLRNEIS 175
Query: 129 RFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMN 188
FNQK+ ES EAWERFK CPHHG +K ++ T Y G +M +D + G +N
Sbjct: 176 GFNQKNSESFAEAWERFKGYSTQCPHHGFKKASLLSTLYRGALPKIRMLLDTTSNGNFLN 235
Query: 189 KNYTEAYALIEDMAQN------HYQWTNERAVTTPTPFKKEAGIYEVSEYNH--LAAKVE 240
K+ E + L+E++AQ+ +Y TN + + K+ + + N L ++
Sbjct: 236 KDVAEGWELVENLAQSDGNYNENYDRTNRGSSDSEDRHKRRTKLLMIRLTNWCLLNREMS 295
Query: 241 ALTQK-------------IEKLNVKAVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQL 287
QK + + N A P PP +
Sbjct: 296 TTLQKKSLHNSKKGRILLLRRSNNVANPQDQVYPP-----------------QNQPPQAK 338
Query: 288 NYAQYNQGMRPNQNFYKNPQGSYGQAAPPGYTN--NQRVAQKSSLEILLE-------NCI 338
+ YNQG QNF PPG+T Q AQ S ++ LL +C
Sbjct: 339 PFIPYNQGYNQKQNF-----------GPPGFTQQPQQTSAQDSEMKTLLHQLVQGQASCS 387
Query: 339 ANQNKNLQEL 348
+K L EL
Sbjct: 388 MTMDKKLAEL 397
>gb|AAD15357.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354975|pir||C84493 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 929
Score = 176 bits (447), Expect = 9e-43
Identities = 123/363 (33%), Positives = 184/363 (49%), Gaps = 39/363 (10%)
Query: 21 IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
IV V NNF+IK L+ +VQ N+F G P EDP H+ RL G K N ++ +L
Sbjct: 61 IVLRPVQNNNFKIKSGLIAMVQGNKFHGLPMEDPLDHLDELERLCGLTKINGVSEDGFKL 120
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
LFPFSL D+A W +L SIT+WDD + AFLA+FF S+TA+LR++I+ F K ES
Sbjct: 121 RLFPFSLGDKAHLWEKTLPKNSITTWDDCKMAFLAKFFSNSRTARLRNEISGFTLKQNES 180
Query: 138 LYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYAL 197
EAWERFK CPHHG + +++T Y G+ +M +D A+ G + K+ E + L
Sbjct: 181 FCEAWERFKGYQTKCPHHGFSQASLLNTLYRGVLPKIRMLLDTASNGNFLKKDIEEGWEL 240
Query: 198 IEDMAQN--HYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEK---LNVK 252
+E++AQ+ +Y R++ T + + +H +++AL K++K + K
Sbjct: 241 VENLAQSGGNYNEDYGRSIYTSS---------NTDDKHH--REMKALNDKLDKIIQMQQK 289
Query: 253 AVPPSSASPPCEV-------CGITGHI---GVDCQLGSAANIEQLNYAQYNQ--GMRPNQ 300
V S P +V C ++ G +AA + YNQ G P Q
Sbjct: 290 HVHFISEDEPFQVQEGENDQCAEIRYVHNQGPSLPSAAAAAEPTKPFVPYNQSLGFVPKQ 349
Query: 301 NFYKNPQGSY-GQAAPPGYTNNQRVA---QKSSLEILLENCIANQNKNLQELKNQTGFLN 356
F QG Y Q PPG+T +Q+ A Q S + +L+ I Q E+ + +N
Sbjct: 350 QF----QGGYQQQQPPPGFTPHQQQAHAPQNSDIMTVLQQLIQGQATGAMEIAKKLSKVN 405
Query: 357 DSL 359
+ +
Sbjct: 406 NKV 408
>emb|CAA57397.1| unnamed protein product [Arabidopsis thaliana]
gi|2129618|pir||S66306 hypothetical protein 1 -
Arabidopsis thaliana retrotransposon Athila
Length = 935
Score = 176 bits (445), Expect = 1e-42
Identities = 128/390 (32%), Positives = 189/390 (47%), Gaps = 66/390 (16%)
Query: 21 IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
IV P V NNFEIK L+ +VQ N+F G EDP H+ F RL K N ++ +L
Sbjct: 61 IVPPPVQNNNFEIKSGLIAMVQGNKFHGLLMEDPLDHLDEFERLCRLTKINGVSEDGFKL 120
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
LFPFSL D+A W +L GSIT+WDD ++AFLA+FF S+TA+LR++I+ F QK ES
Sbjct: 121 RLFPFSLGDKAHLWEKTLPHGSITTWDDCKKAFLAKFFSNSRTARLRNEISGFTQKQNES 180
Query: 138 LYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYAL 197
EAWERFK CPHHG ++ ++ T Y G+ +M +D A+ G +NK+ + + L
Sbjct: 181 FCEAWERFKGYPTKCPHHGFKEASLLSTLYRGVLPKIRMLLDTASNGNFLNKDVEDGWEL 240
Query: 198 IEDMAQN--HYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEKL------ 249
+E++AQ+ +Y +R++ T T S+ H +++AL KI+KL
Sbjct: 241 VENLAQSDGNYNEDYDRSICTSTE----------SDDKH-RREIKALHDKIDKLLQVQQK 289
Query: 250 --------NVKAVPPSSASPPCEVCGITGHIG-------------VDCQLGSAANIEQLN 288
V + E+ + G + + + AN +
Sbjct: 290 HVHFASEDEVFQIQEGENDQGAEISYVQNQGGSNKGYNNYRPNPNLSYRSTNVANPQDQV 349
Query: 289 YAQ-------------YNQ--GMRPNQNFYKNPQGSY-GQAAPPGYTNNQRVA---QKSS 329
Y Q YNQ G P Q F QG Y Q PPG+T Q A Q+S
Sbjct: 350 YLQQQLQQNQPKPFVTYNQSLGFVPKQQF----QGGYQQQQPPPGFTPQQHQASAPQESD 405
Query: 330 LEILLENCIANQNKNLQELKNQTGFLNDSL 359
++ +L+ + Q + E + LN+ +
Sbjct: 406 IKNMLQQIMQGQAAGVMESAKKIADLNNKV 435
>gb|AAX95991.1| Transposable element protein, putative [Oryza sativa (japonica
cultivar-group)] gi|62733832|gb|AAX95941.1| Transposable
element protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 477
Score = 174 bits (440), Expect = 6e-42
Identities = 118/369 (31%), Positives = 185/369 (49%), Gaps = 26/369 (7%)
Query: 1 MAERTLKEYATPSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISS 60
MA++TL+E+ PS + AI + +F++K +L+ + Q + + G P ED N ++
Sbjct: 8 MADKTLREFVAPSADNV-AIGSQINMGDVDFDLKSSLITMAQASPYCGKPNEDANAYLQQ 66
Query: 61 FLRLSGT--IKE-NQEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPP 117
FL + T +KE + +A+RL LFP SL A WF++ +I + D AFL FFP
Sbjct: 67 FLEIYNTYTMKEVSPDAIRLRLFPVSLLWNAKQWFYA-NCATINTCDKCSTAFLLMFFPR 125
Query: 118 SKTAKLRDQITRFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMS 177
K+ LR +I+ F Q ES+ +AWER +E + CPHHG++ WLI+ FY G + ++
Sbjct: 126 GKSNALRGRISSFQQTTDESIPKAWERLQEYVAACPHHGMDDWLILQNFYIGFTPMSRDH 185
Query: 178 VDAAAGGALMNKNYTEAYALIEDMAQNHYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAA 237
++ AGGA +K EA LIE M N W+ ER T ++ G++ + E LAA
Sbjct: 186 LNMVAGGAFFSKTVREAIDLIEKMVSN-MGWSEERLQT------RQRGVHTIKEMEILAA 238
Query: 238 KVEALTQKI---EKLNVKAVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQ 294
K++ L +++ +K V + CEV G TGH DC E A Y
Sbjct: 239 KLDFLMKRLDDHDKRPQGTVKALDSHVTCEVRGSTGHPRNDCP-------ETHEEAMY-- 289
Query: 295 GMRPNQNFYKNPQGSYGQAAPPGYTNNQRVAQKSSLEILLENCIANQNKNLQELKNQTGF 354
M N N Y+ PQG G P Y R+ +++ I+ + ++ L +
Sbjct: 290 -MGNNNNGYR-PQGGQGWNQPCPYYQGARIFRRNVKVIITRGGKSTRDPPYPNLTRTSSI 347
Query: 355 LNDSLSPHT 363
++ S +T
Sbjct: 348 TREAPSGNT 356
>gb|AAF67381.1| Hypothetical protein T15F17.m [Arabidopsis thaliana]
Length = 346
Score = 172 bits (435), Expect = 2e-41
Identities = 111/297 (37%), Positives = 163/297 (54%), Gaps = 27/297 (9%)
Query: 21 IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
IV P V NNF+IK +L+ +VQ N+F G P EDP H+ F RL K N ++ +L
Sbjct: 29 IVPPPVQNNNFKIKSSLIAMVQGNKFHGLPMEDPLDHLDEFERLCDLTKINGVSEDGFKL 88
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
LFPFSL D+A W +L GSIT+WDD ++ FL +FF S+TA+L ++I+ F QK ES
Sbjct: 89 RLFPFSLGDKAHLWEKTLPQGSITTWDDCKKVFLEKFFSNSRTARLWNEISGFTQKQNES 148
Query: 138 LYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYAL 197
EAWERFK CPHHG ++ ++ T Y G+ +M +D A+ G +NK+ + + L
Sbjct: 149 FCEAWERFKGYQTKCPHHGFKEASLLSTLYRGVLPKIRMLLDTASNGNFLNKDVEDGWEL 208
Query: 198 IEDMAQN--HYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEK-LNVKAV 254
+E++AQ+ +Y +R++ T T S+ H +++AL +KI+K L V+
Sbjct: 209 VENLAQSDGNYNEDYDRSIPTSTE----------SDDKH-RREIKALHEKIDKLLQVQQK 257
Query: 255 PPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRPNQNFYK-NPQGSY 310
SAS EV I Q G +++Y Q G N Y+ NP +Y
Sbjct: 258 HVHSASED-EVFQI--------QEGENDQDAEISYVQNQGGYNKGYNNYRPNPNLTY 305
>ref|NP_909568.1| hypothetical protein [Oryza sativa] gi|14018108|gb|AAK52171.1|
hypothetical protein [Oryza sativa]
Length = 657
Score = 170 bits (431), Expect = 6e-41
Identities = 114/311 (36%), Positives = 163/311 (51%), Gaps = 29/311 (9%)
Query: 1 MAERTLKEYATPSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISS 60
MA++TL+E+A PST AI + +F++K +L+ + Q F G P ED N H+
Sbjct: 1 MADKTLREFAAPSTGNV-AIGPQINMGDVDFDLKSSLIMMAQACPFCGEPNEDANAHLQQ 59
Query: 61 FLRL--SGTIKE----NQEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARF 114
FL + + TIK + +AVRL LF F L + WF++ + WD AFL++F
Sbjct: 60 FLEICITYTIKGIKGVSPDAVRLRLFLFFLLGKTKQWFYANRA-VVNIWDKCSTAFLSKF 118
Query: 115 FPPSKTAKLRDQITRFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTT 174
FP KT L +I+ F ES+ EAWER +E + +CPHHG++ WLI+ FYNGL+ +
Sbjct: 119 FPMGKTNALGGRISSFQLTRVESIPEAWERLQEYVAVCPHHGMDGWLILQNFYNGLTPMS 178
Query: 175 KMSVDAAAGGALMNKNYTEAYALIEDMAQNHYQWTNERAVTTPTPFKKEAGIYEVSEYNH 234
+ +DAAA G+ +K A LIE M N W+ ER T + G+ V E
Sbjct: 179 RDHLDAAAEGSFFSKVVRGAVDLIEKMVSN-MGWSEERLQT------HQRGMCFVKETEL 231
Query: 235 LAAKVEALTQKI---EKLNVKAVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQ 291
LAAK++ L +++ +K + + CEVCG TGH G DC +E A
Sbjct: 232 LAAKLDLLMKRLDDHDKRPQGTIKALDSHVTCEVCGGTGHSGNDC-------LETREDAM 284
Query: 292 Y----NQGMRP 298
Y N G RP
Sbjct: 285 YMGNNNNGNRP 295
>emb|CAE75954.1| B1159F04.17 [Oryza sativa (japonica cultivar-group)]
gi|38605824|emb|CAE05233.3| OSJNBa0011K22.15 [Oryza
sativa (japonica cultivar-group)]
gi|50923131|ref|XP_471926.1| OSJNBa0011K22.15 [Oryza
sativa (japonica cultivar-group)]
gi|50923095|ref|XP_471908.1| B1159F04.17 [Oryza sativa
(japonica cultivar-group)]
Length = 406
Score = 168 bits (426), Expect = 2e-40
Identities = 111/295 (37%), Positives = 148/295 (49%), Gaps = 21/295 (7%)
Query: 46 FSGSPTEDPNLHISSFLRLSGTIK---ENQEAVRLHLFPFSLRDRASAWFHSLEVGSITS 102
F G P ED N H+ FL + T + +AVRL LF FSL RA WF++ +I +
Sbjct: 5 FCGKPNEDANAHLQQFLEICSTYTIKGVSPDAVRLRLFLFSLLGRAKQWFYANRA-AINT 63
Query: 103 WDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLI 162
WD AFL++FFP KT LR +I+ F Q ES+ EAWER +E + CP HG++ WLI
Sbjct: 64 WDKCSTAFLSKFFPMGKTNALRGRISSFQQTRDESIPEAWERLQEYVAACPLHGMDDWLI 123
Query: 163 VHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYALIEDMAQNHYQWTNERAVTTPTPFKK 222
+ FYNGL+ ++ +D AAGGA +K A LIE M N W+ ER T
Sbjct: 124 LLNFYNGLTLMSRDHLDTAAGGAFFSKTVQGAVDLIEKMVSN-MGWSEERLQT------H 176
Query: 223 EAGIYEVSEYNHLAAKVEALTQKI---EKLNVKAVPPSSASPPCEVCGITGHIGVDCQLG 279
+ G++ V E LAAK++ L +++ EK V CEVC T H G DC
Sbjct: 177 QQGMHIVKETELLAAKLDLLIKRLDDHEKQPQGTVKALDYHITCEVCSNTSHSGNDC--- 233
Query: 280 SAANIEQLNYAQYNQGMRPNQNFYKNPQGSYGQAAPPGYTNNQRVAQKSSLEILL 334
E + N G RP N Y Q G NN + +SSL+ L+
Sbjct: 234 PETREEAMYMGNNNNGYRPQGGQRWNQPRPYYQ----GGNNNGNFSNQSSLKDLV 284
>gb|AAX95928.1| Transposable element protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 715
Score = 168 bits (425), Expect = 3e-40
Identities = 117/344 (34%), Positives = 171/344 (49%), Gaps = 46/344 (13%)
Query: 1 MAERTLKEYATPSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISS 60
MA +TL E+A PS + AI + +F++K +L+ + Q + F G P ED N H+
Sbjct: 1 MANKTLCEFAAPSADNV-AIGPQINMGVVDFDLKSSLITMAQASPFYGKPNEDANAHLQQ 59
Query: 61 FLRLSGTIK---ENQEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPP 117
FL + T + AV+L LF FSL RA WF++ ++ +W AFL++FFP
Sbjct: 60 FLEICSTYTIKGVSPNAVKLRLFLFSLLGRAKQWFYANRA-TVNTWVKCSMAFLSKFFPM 118
Query: 118 SKTAKLRDQITRFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMS 177
KT LR +I+ F Q ES+ EAWER +E + C HHG++ LI+ FYNGL+ T++
Sbjct: 119 GKTNALRGRISSFQQTRYESIPEAWERLQEYVAACRHHGMDDSLILQNFYNGLTPTSRDH 178
Query: 178 VDAAAGGALMNKNYTEAYALIEDMAQNHYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAA 237
+DAAA G + N W+ ER T ++ G++ V E LAA
Sbjct: 179 LDAAARGMVSNMG-----------------WSEERIQT------RQRGMHTVKETELLAA 215
Query: 238 KVEALTQKI---EKLNVKAVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQ 294
K++ L +++ EK + + CEVCG TGH G DC +E A Y
Sbjct: 216 KLDLLMKRLDDHEKRPQGTIKALDSHITCEVCGNTGHSGNDC-------LETREEAMY-- 266
Query: 295 GMRPNQNFYKNPQGSYGQAAPPGY----TNNQRVAQKSSLEILL 334
N+N PQG G + P Y NN + + SL+ L+
Sbjct: 267 --MGNKNNGYCPQGGQGWSQPRPYYQGGNNNGNFSNQPSLKDLV 308
>gb|AAD19759.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354976|pir||E84475 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 750
Score = 167 bits (423), Expect = 5e-40
Identities = 105/297 (35%), Positives = 157/297 (52%), Gaps = 27/297 (9%)
Query: 21 IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
IV P V NNFEIK L+ +VQ N+F G P ED H+ F RL K N ++ +
Sbjct: 29 IVLPLVQNNNFEIKSGLIAMVQGNKFHGLPMEDSLDHLDEFERLCDLTKINGVSEDGFKF 88
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
LFPFSL D+ W +L SIT+WDD ++AF A+FF S+TA+LR++I+ F QK ES
Sbjct: 89 RLFPFSLGDKTHLWEKTLPQNSITTWDDCKKAFFAKFFSNSRTARLRNEISGFTQKQNES 148
Query: 138 LYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYAL 197
EAWERFK CPH G ++ ++ T Y G+ +M +D A+ G +NK+ + + L
Sbjct: 149 FCEAWERFKGYQTKCPHPGFKQASLLSTLYRGVLPKLRMLLDTASNGNFLNKDVEKGWEL 208
Query: 198 IEDMAQN--HYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEK-LNVKAV 254
+E++AQ+ +Y +++++T + E + +H +++AL KI+K L V+
Sbjct: 209 VENLAQSDGNYNENYDKSISTSS---------ESDDKHH--REIKALNDKIDKLLQVQQK 257
Query: 255 PPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRPNQNFYK-NPQGSY 310
AS H Q G +++Y Q G N Y+ NP SY
Sbjct: 258 HVHFASE---------HEVFQIQEGENDQCAEISYVQNQDGYNKGYNNYRPNPNLSY 305
>gb|AAP51916.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37530654|ref|NP_919629.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20042899|gb|AAM08727.1| Putative polyprotein [Oryza
sativa] gi|18997221|gb|AAL83338.1| Putative polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 689
Score = 167 bits (423), Expect = 5e-40
Identities = 125/386 (32%), Positives = 179/386 (45%), Gaps = 58/386 (15%)
Query: 1 MAERTLKEYATPSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISS 60
MA +TL+E+A P + AI + +F++K + + + Q + F G P ED N H+
Sbjct: 1 MASKTLREFAAPFADNV-AIGPQVNIGDADFDLKSSHITMAQASPFCGKPNEDANAHLQQ 59
Query: 61 FLRLSGTIK---ENQEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPP 117
FL + T + + V+L LFPFSL RA WF++ ++ +WD AFL++FFP
Sbjct: 60 FLEICSTYTIKGVSPDVVKLRLFPFSLLGRAKQWFYANRT-AVNTWDKCSTAFLSKFFP- 117
Query: 118 SKTAKLRDQITRFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMS 177
EAWER +E + CPH G++ WLI+ FYNGL+ ++
Sbjct: 118 ---------------------MEAWERLQEYVAACPHLGMDDWLILQNFYNGLTPMSRDH 156
Query: 178 VDAAAGGALMNKNYTEAYALIEDMAQNHYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAA 237
+DAAA GA +K A LIE M N W+ ER T ++ G++ V E LAA
Sbjct: 157 LDAAARGAFFSKTVQGAVELIEKMVSN-MGWSEERLQT------RQRGMHTVKETELLAA 209
Query: 238 KVEALTQKI---EKLNVKAVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQ 294
K++ L +++ EK + V + CEVCG TGH G DC +E A Y
Sbjct: 210 KLDLLMKRLDDHEKGPQRTVKALDSHVMCEVCGNTGHSGNDC-------LETCEEAMY-- 260
Query: 295 GMRPNQNFYKNPQGSYGQAAPPGY----TNNQRVAQKSSLEILLENCIANQNKNLQELKN 350
N N Y PQG G P Y NN + SL+ L + Q K L
Sbjct: 261 --MGNNNGY-CPQGGQGWNQPRPYYQGGNNNSNFPNQPSLKDL----VFAQAKTTDALSK 313
Query: 351 QTGFLNDSLSPHTPKCLRPKSPKWPN 376
+ ND L+ P + P P+
Sbjct: 314 KLA-ANDKLASLVPANETGRIPGQPD 338
>gb|AAM15150.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354977|pir||A84486 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 1012
Score = 167 bits (422), Expect = 7e-40
Identities = 109/304 (35%), Positives = 157/304 (50%), Gaps = 35/304 (11%)
Query: 12 PSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN 71
P +A IV P + NNF+IK L++++Q N+F G P EDP H+ +F RL K N
Sbjct: 15 PRNHHQRAGIVPPPIQNNNFKIKSDLISMIQGNKFHGLPMEDPLDHLDNFDRLCSLTKIN 74
Query: 72 ---QEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQIT 128
+E+ +L LFPFSL D+A W +L V SI +WDD ++AFLA+FF S+ A+LR +I+
Sbjct: 75 GVSEESFKLRLFPFSLGDKAHLWEKTLPVKSIDTWDDCKKAFLAKFFSNSRKARLRSEIS 134
Query: 129 RFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMN 188
FNQK+ ES EAWERFK CPHH E ++ L +M +D A+ G ++N
Sbjct: 135 GFNQKNSESFSEAWERFKGYTTQCPHH--ESLPPQYSILRCLP-KIRMLLDTASNGNILN 191
Query: 189 KNYTEAYALIEDMAQNH------YQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEAL 242
K+ E + L+E++AQ+H Y TN + + KKE ++ L
Sbjct: 192 KDVAEGWELVENLAQSHRNYNEDYDRTNRGSSDSEDKHKKE---------------IKTL 236
Query: 243 TQKIEKLNVKAVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRPNQNF 302
+I+KL + + V IT Q G IE+++Y Q G N
Sbjct: 237 NDRIDKLVL--------AQQRNVYYITEEELTQLQDGENLTIEEVSYLQNQGGYNKGFNN 288
Query: 303 YKNP 306
YK P
Sbjct: 289 YKPP 292
>gb|AAF67369.1| Hypothetical protein T15F17.a [Arabidopsis thaliana]
Length = 703
Score = 166 bits (420), Expect = 1e-39
Identities = 93/234 (39%), Positives = 137/234 (57%), Gaps = 16/234 (6%)
Query: 21 IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
IV P V NNFEIK L+ +VQ N+F G P EDP H+ F RL K N ++ +L
Sbjct: 29 IVPPPVQNNNFEIKSGLIAMVQSNKFHGLPMEDPLDHLDEFDRLCSLTKINGVSEDGFKL 88
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
LFPFSL D+A W SL GSITSW+D ++AFLA+FF S+TA+LR+ I+ F Q + E+
Sbjct: 89 RLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSNSRTARLRNDISGFTQTNNET 148
Query: 138 LYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYAL 197
EAWE FK CPHHG K ++ T Y + +M +D A+ G +NK+ + + L
Sbjct: 149 FCEAWECFKGYQTQCPHHGFSKASLLSTLYRRVLPKIRMLLDTASNGNFLNKDVEDGWEL 208
Query: 198 IEDMAQN--HYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEKL 249
+E++AQ+ +Y +R++ T + S+ H +++A+ K++KL
Sbjct: 209 VENLAQSDGNYNEDYDRSIRTSSD----------SDEKH-RREMKAMNDKLDKL 251
>gb|AAM15284.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|20197712|gb|AAM15220.1| putative Athila retroelement
ORF1 protein [Arabidopsis thaliana]
Length = 277
Score = 166 bits (419), Expect = 2e-39
Identities = 83/196 (42%), Positives = 121/196 (61%), Gaps = 3/196 (1%)
Query: 12 PSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN 71
P + IV P V NNFEIK L++++Q N+F G P +DP H+ SF RL G N
Sbjct: 72 PRNHHQRQGIVPPPVQNNNFEIKSGLISMIQGNKFHGLPMKDPLDHLDSFDRLCGLTNIN 131
Query: 72 ---QEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQIT 128
++ + LFPFS+ D+A W +L SITSWDD ++AFLA+FF + T +LR++I+
Sbjct: 132 GVTEDMFKQRLFPFSVGDKAHHWEKTLPSDSITSWDDCKKAFLAKFFSNACTTRLRNEIS 191
Query: 129 RFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMN 188
FNQK+ E+ EAWERFK CPHHG +K ++ T Y G +M +D A+ G +N
Sbjct: 192 GFNQKNNETFCEAWERFKSYTTQCPHHGFKKASLLSTLYRGALPKIRMLLDTASNGNFLN 251
Query: 189 KNYTEAYALIEDMAQN 204
K+ + + L+E++AQ+
Sbjct: 252 KDVVKGWELVENLAQS 267
>emb|CAB81134.1| putative athila transposon protein [Arabidopsis thaliana]
gi|25354974|pir||B85075 probable athila transposon
protein [imported] - Arabidopsis thaliana
Length = 866
Score = 166 bits (419), Expect = 2e-39
Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 26/297 (8%)
Query: 21 IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
I P + NNFEIK L++++Q N+F G P EDP H+ F RL K N + +L
Sbjct: 29 IAPPAIQNNNFEIKSGLISMIQGNKFYGLPMEDPLDHLDEFDRLCNLTKINGVSADGFKL 88
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
LFPFSL D+A W +L SI +WDD ++AFL++FF ++TA+LR++I+ F+QK GES
Sbjct: 89 RLFPFSLGDKAHIWEKNLPHDSIITWDDCKKAFLSKFFSNARTARLRNEISGFSQKTGES 148
Query: 138 LYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYAL 197
EAWERFK CPHHG K ++ T Y G+ +M +D A+ G NK+ E + L
Sbjct: 149 FCEAWERFKGYTNQCPHHGFTKASMLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGWEL 208
Query: 198 IEDMAQN--HYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEKLNVKAVP 255
++++AQ+ +Y +R V S+ H +++AL K++++ +
Sbjct: 209 VDNLAQSDGNYNEDCDRTVRDTAD----------SDDKH-RKEIKALNDKLDRILL---- 253
Query: 256 PSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRPNQNFYK--NPQGSY 310
+ V + Q G +E+++Y NQ N +K NP SY
Sbjct: 254 ----NQQKHVHFLVDDEQFQVQDGEGNQLEEVSYINNNQSGYKGYNNFKTNNPNLSY 306
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.131 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 732,874,217
Number of Sequences: 2540612
Number of extensions: 30801481
Number of successful extensions: 81769
Number of sequences better than 10.0: 612
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 234
Number of HSP's that attempted gapping in prelim test: 81039
Number of HSP's gapped (non-prelim): 715
length of query: 403
length of database: 863,360,394
effective HSP length: 130
effective length of query: 273
effective length of database: 533,080,834
effective search space: 145531067682
effective search space used: 145531067682
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)
Medicago: description of AC121242.1