BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121241.13 - phase: 0 /pseudo
(869 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar... 525 e-147
emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar... 525 e-147
ref|XP_472505.1| OSJNBb0049I21.6 [Oryza sativa (japonica cultiva... 524 e-147
gb|AAP53838.1| putative gag-pol protein [Oryza sativa (japonica ... 523 e-146
emb|CAA73042.1| polyprotein [Ananas comosus] gi|7489851|pir||T07... 521 e-146
ref|XP_472504.1| OSJNBb0049I21.5 [Oryza sativa (japonica cultiva... 520 e-146
gb|AAO45752.1| pol protein [Cucumis melo] 518 e-145
gb|AAT38744.1| putative gag-pol polyprotein [Solanum demissum] 518 e-145
gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] 515 e-144
ref|XP_471222.1| OSJNBb0016B03.11 [Oryza sativa (japonica cultiv... 514 e-144
ref|NP_917895.1| putative polyprotein [Oryza sativa (japonica cu... 514 e-144
emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar... 514 e-144
gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cul... 514 e-144
gb|AAP52803.1| putative retroelement [Oryza sativa (japonica cul... 514 e-144
emb|CAD39969.2| OSJNBa0072D08.2 [Oryza sativa (japonica cultivar... 514 e-144
gb|AAV31378.1| putative polyprotein [Oryza sativa (japonica cult... 514 e-144
gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cult... 514 e-144
gb|AAP52185.1| putative polyprotein [Oryza sativa (japonica cult... 514 e-144
emb|CAE05388.1| OSJNBa0022F16.12 [Oryza sativa (japonica cultiva... 514 e-144
emb|CAD79705.1| hypothetical Gag-Pol polyprotein [Oryza sativa (... 514 e-144
>emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar-group)]
gi|50930427|ref|XP_474741.1| OSJNBa0059D20.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 525 bits (1351), Expect = e-147
Identities = 246/347 (70%), Positives = 295/347 (84%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR LN+VTIKN+YPLPRID+L DQL GA+VFSKIDL SGYHQ+K++ ED+ KTAF TR
Sbjct: 596 VDYRSLNEVTIKNKYPLPRIDNLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTR 655
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG YE+ VM FG+TNAP FM MN++F YLDKFVVVF DDILIYSK+EEEHAEH+++V
Sbjct: 656 YGLYEFTVMSFGLTNAPAYFMNLMNKVFMEYLDKFVVVFIDDILIYSKDEEEHAEHLRLV 715
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
LQ L++ KLYAK SKCEFWL EV+FLGH+IS G+ VDP+KV+AV++W+ PKSVTEIRSF
Sbjct: 716 LQKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIRSF 775
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLA YYRRFIEGFSK+A P+TQL K K FVW QC+ SF +LK +LT+APIL+LP
Sbjct: 776 LGLARYYRRFIEGFSKIARPMTQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIR 835
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ FV+YCDAS+ GLGGVLMQDGKVVAYASRQLR HE+NYPTHDLELAAVV LKIWRHYL
Sbjct: 836 KDFVIYCDASRQGLGGVLMQDGKVVAYASRQLRPHEENYPTHDLELAAVVHALKIWRHYL 895
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
G+ ++++DHKSLKY+F Q +LN+RQRRWLEL+KD D ++YHPGK
Sbjct: 896 IGNHCDIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDLEVHYHPGK 942
Score = 304 bits (778), Expect = 9e-81
Identities = 147/306 (48%), Positives = 206/306 (67%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
A+LAE+Y+ IV LHGVP I+SDR +FTS FW+ + +ALGS L S+AYHPQ DG +E
Sbjct: 1162 AKLAELYMTRIVCLHGVPKKIISDRGTQFTSHFWEKVHEALGSYLAFSTAYHPQTDGQTE 1221
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
RT Q LED+LR C L+ W+ LP EF+YNNS+ +S+ M+P E L+GRRCRTPL W
Sbjct: 1222 RTNQVLEDMLRACALDFSKDWERCLPYAEFSYNNSFQASLKMSPNEALFGRRCRTPLMWS 1281
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
E+GE + GPD++ + EKV++IR+++K +QSRQKSY D R++ LEF+EGD+++L+V+PM
Sbjct: 1282 ETGERAVFGPDIIQEAEEKVRLIRDRLKIAQSRQKSYADTRRRNLEFKEGDYIYLKVSPM 1341
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
G R KL P+++GP+QI R G VAY++ LP +++++H VFHVSQL+K + P
Sbjct: 1342 RGTKRFKVKGKLAPRYVGPFQIIARRGEVAYQLQLPENIADVHPVFHVSQLKKCLRVPEE 1401
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLE 862
P +V + ++LT P+RI K+ R K + KV T E TWE E +
Sbjct: 1402 QAPLEEVHISNDLTYPEHPIRILDEAAKRTRSKVWRMYKVQWSNHTEEEATWESEEFLRT 1461
Query: 863 SYPELF 868
YP LF
Sbjct: 1462 EYPHLF 1467
>emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar-group)]
gi|50926528|ref|XP_473211.1| OSJNBa0019D11.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 525 bits (1351), Expect = e-147
Identities = 246/347 (70%), Positives = 294/347 (83%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR LN+VTIKN+YPLPRIDDL DQL GA+VFSKIDL SGYHQ+K++ ED+ KTAF TR
Sbjct: 596 VDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTR 655
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG YE+ VM FG+TNAP FM MN++F YLDKFVVVF DDILIYSK+EEEHAEH+++V
Sbjct: 656 YGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLV 715
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
LQ L++ KLYAK SKCEFWL EV+FLGH+IS G+ VDP+KV+AV++W+ PKSVTEIRSF
Sbjct: 716 LQKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIRSF 775
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRFIEGFSK+A P+TQL K K FVW QC+ SF +LK +LT+APIL+LP
Sbjct: 776 LGLAGYYRRFIEGFSKIARPMTQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIR 835
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ FV+YCDAS+ GLGGVLMQD KVVAYASRQLR HE+NYPTHDLEL AVV LKIWRHYL
Sbjct: 836 KDFVIYCDASRQGLGGVLMQDEKVVAYASRQLRPHEENYPTHDLELVAVVHALKIWRHYL 895
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
G+ ++++DHKSLKY+F Q +LN+RQRRWLEL+KD D ++YHPGK
Sbjct: 896 IGNHCDIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDLEVHYHPGK 942
Score = 302 bits (773), Expect = 4e-80
Identities = 146/306 (47%), Positives = 205/306 (66%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
A+LAE+Y+ IV LHGVP I+SDR +FTS FW+ + +ALGS L S+AYHPQ DG +E
Sbjct: 1162 AKLAELYMTRIVCLHGVPKKIISDRGTQFTSHFWEKVHEALGSYLAFSTAYHPQTDGQTE 1221
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
RT Q LED+LR C L+ W+ LP EF+YNNS+ +S+ M+P E L+GRRCRTPL W
Sbjct: 1222 RTNQVLEDMLRACALDFSKDWERCLPYAEFSYNNSFQASLKMSPNEALFGRRCRTPLMWS 1281
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
E+GE + GPD++ + EKV++IR+++K +QSRQKSY D R++ LEF+EGD+V+L+V+PM
Sbjct: 1282 ETGERAVFGPDIIQEAEEKVRLIRDRLKVAQSRQKSYADTRRRNLEFKEGDYVYLKVSPM 1341
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
G R KL P+++GP+QI+ R G VAY++ LP +++ +H VFHVSQL+K + P
Sbjct: 1342 RGTKRFKVKGKLAPRYVGPFQITARRGEVAYQLQLPENIAEVHPVFHVSQLKKCLRVPEE 1401
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLE 862
P ++ + ++LT P+RI K+ R K + KV T TWE E +
Sbjct: 1402 QAPLEEIHISNDLTYPEHPIRILDEAEKRTRSKVWRMYKVQWSNHTEAEATWESEEFLRT 1461
Query: 863 SYPELF 868
YP LF
Sbjct: 1462 EYPHLF 1467
>ref|XP_472505.1| OSJNBb0049I21.6 [Oryza sativa (japonica cultivar-group)]
gi|38346970|emb|CAD39728.2| OSJNBb0049I21.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1606
Score = 524 bits (1350), Expect = e-147
Identities = 245/347 (70%), Positives = 295/347 (84%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR LN+VTIKN+YPLPRIDDL DQL GA+VFSKIDL SGYHQ+K++ D+ KTAF TR
Sbjct: 529 VDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTGDIPKTAFSTR 588
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG YE+ VM FG+TNAP FM MN++F YLDKFVVVF DDILIYSK+EEEHAEH+++V
Sbjct: 589 YGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLV 648
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
L+ L++ KLYAK SKCEFWL E++FLGH+IS G+ VDP+KV+AV++W+ PKSVTEIRSF
Sbjct: 649 LEKLRKHKLYAKFSKCEFWLKELAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIRSF 708
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRFIEGFSK+A P+TQL K K FVW QC+ SF +LK +LT+APIL+LP
Sbjct: 709 LGLAGYYRRFIEGFSKIARPMTQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIR 768
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ FV+YCDAS+ GLGGVLMQDGKVVAYASRQLR HE+NYPTHDLELAAVV LKIWRHYL
Sbjct: 769 KDFVIYCDASRQGLGGVLMQDGKVVAYASRQLRPHEENYPTHDLELAAVVHALKIWRHYL 828
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
G+ ++++DHKSLKY+F Q +LN+RQRRWLEL+KD D ++YHPGK
Sbjct: 829 IGNHCDIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDLEVHYHPGK 875
Score = 239 bits (611), Expect = 2e-61
Identities = 125/306 (40%), Positives = 177/306 (56%), Gaps = 43/306 (14%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
A+LAE+Y+ IV LHG+P I+SDR +FTS FW+ + +ALGS L S+AYHPQ DG +E
Sbjct: 1015 AKLAELYMTRIVCLHGIPKRIISDRGTQFTSHFWEKVHEALGSHLAFSTAYHPQTDGQTE 1074
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
RT Q LED+LR C L+ W+ LP EF+YNNS+ +S+ M+P ETL+GRRCRTPL W
Sbjct: 1075 RTNQVLEDMLRACALDFSKDWERCLPYAEFSYNNSFQASLKMSPNETLFGRRCRTPLMWS 1134
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
E+GE + GPD++ + EKV++IR+++K +QSRQKSY D R++ LEF+EGD+V+L+V+PM
Sbjct: 1135 ETGERAVFGPDIIQEAEEKVRLIRDRLKVAQSRQKSYADTRRRNLEFKEGDYVYLKVSPM 1194
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
G R +L+K + P
Sbjct: 1195 RGTKR-------------------------------------------FKLKKCLRVPEE 1211
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLE 862
P ++ + ++LT P+RI K++R K + KV T + TWE E +
Sbjct: 1212 QAPLEEIHISNDLTYPEHPIRILDEAEKRIRSKVWCMYKVQWSNHTEDEATWESEEFLRT 1271
Query: 863 SYPELF 868
YP LF
Sbjct: 1272 EYPHLF 1277
>gb|AAP53838.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
gi|37534498|ref|NP_921551.1| putative gag-pol protein
[Oryza sativa (japonica cultivar-group)]
Length = 1470
Score = 523 bits (1347), Expect = e-146
Identities = 246/347 (70%), Positives = 294/347 (83%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR LN+VTIKN+YPLPRIDDL DQL GA+VFSKIDL SGYHQ+K++ ED+ KTAF TR
Sbjct: 596 VDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTR 655
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG YE+ VM FG+TNAP FM MN++F YLDKFVVVF DDILIYSK+EEEHAEH+++V
Sbjct: 656 YGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLV 715
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
LQ L++ KLYAK SKCEFWL EV+FLGH+IS G+ VDP+KV+AV++W+ PKSVTEIRSF
Sbjct: 716 LQKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIRSF 775
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLA YYRRFIE FSK+A P+TQL K K FVW QC+ SF +LK +LT+APIL+LP
Sbjct: 776 LGLAEYYRRFIEWFSKIARPMTQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIR 835
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ FV+YCDAS+ GLGGVLMQDGKVVAYASRQLR HE+NYPTHDLELAAVV LKIWRHYL
Sbjct: 836 KDFVIYCDASRQGLGGVLMQDGKVVAYASRQLRPHEENYPTHDLELAAVVHALKIWRHYL 895
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
G+ ++++DHKSLKY+F Q +LN+RQRRWLEL+KD D ++YHPGK
Sbjct: 896 IGNHCDIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDLEVHYHPGK 942
Score = 298 bits (763), Expect = 5e-79
Identities = 144/306 (47%), Positives = 204/306 (66%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
A+LAE+Y+ IV LHG+P I+SDR +FTS FW+ + +ALGS L S+AYHPQ DG +E
Sbjct: 1162 AKLAELYMTRIVCLHGIPKRIISDRGTQFTSHFWEKVHEALGSYLTFSTAYHPQTDGQTE 1221
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
RT Q LED+LR C L+ W+ LP EF+YNNS+ +S+ M+P E L+GRRCRTPL W
Sbjct: 1222 RTNQVLEDMLRACALDFSKDWERCLPYAEFSYNNSFQASLRMSPNEALFGRRCRTPLMWS 1281
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
E+GE + GPD++ + EKV +IR+++K +QSRQKSY D R++ LEF+EGD+V+L+V+PM
Sbjct: 1282 ETGERAVFGPDIIQEAEEKVHLIRDRLKVAQSRQKSYADTRRRNLEFKEGDYVYLKVSPM 1341
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
G R KL P+++GP+QI R G VAY++ LP +++++H VFHVSQL+K +
Sbjct: 1342 RGTKRFKVKGKLAPRYVGPFQIIARRGEVAYQLQLPENIADVHPVFHVSQLKKCLRVSEE 1401
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLE 862
P ++ + ++LT P+RI K+ R K + KV T + TWE E +
Sbjct: 1402 QAPLEEIHISNDLTYPKHPIRILDEAEKRTRSKVWHMYKVQWSNHTEDEATWESEEFLRT 1461
Query: 863 SYPELF 868
YP LF
Sbjct: 1462 EYPHLF 1467
>emb|CAA73042.1| polyprotein [Ananas comosus] gi|7489851|pir||T07863 probable
polyprotein - pineapple retrotransposon dea1 (fragment)
Length = 871
Score = 521 bits (1342), Expect = e-146
Identities = 247/347 (71%), Positives = 291/347 (83%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR+LNKVTIKN+YPLPRIDDL DQL G+ V+SKIDL SGYHQ+K+K ED+ KTAFRTR
Sbjct: 71 VDYRELNKVTIKNKYPLPRIDDLFDQLQGSCVYSKIDLQSGYHQLKIKPEDVSKTAFRTR 130
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YGHYE+ VMPFG+TNAP FM+ MNR+F YLD+FVVVF DDIL+YS+++ +H EH++IV
Sbjct: 131 YGHYEFAVMPFGLTNAPTAFMDLMNRVFKPYLDRFVVVFIDDILVYSRSDADHEEHLRIV 190
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
LQ+L+EK+LY KL KCEFWL EV+FLGH+ISGSGI VDP K++A+ W SVTEIRSF
Sbjct: 191 LQVLREKELYVKLKKCEFWLREVAFLGHLISGSGIAVDPKKIEAIKDWPRLTSVTEIRSF 250
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRF+E F+KL+ PLT+LT KG F+W+ CE SF ELK+RLTTAPIL LP
Sbjct: 251 LGLAGYYRRFVERFAKLSTPLTRLTHKGVKFIWNDACERSFQELKQRLTTAPILTLPVAG 310
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+VVY DAS GLG VLMQD KV+AYASRQL+ +EKNYPTHDLELAAVVF LK+WRHYL
Sbjct: 311 AGYVVYSDASLNGLGCVLMQDDKVIAYASRQLKEYEKNYPTHDLELAAVVFALKLWRHYL 370
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
YG EV++DHKSLKYLF QKELN+RQRRWLELLKD D + YHPGK
Sbjct: 371 YGERCEVYTDHKSLKYLFTQKELNLRQRRWLELLKDYDLTILYHPGK 417
Score = 301 bits (771), Expect = 6e-80
Identities = 140/231 (60%), Positives = 185/231 (79%)
Query: 564 QLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSER 623
+LA++Y+ IV+LHGVP+SIVSDR+ RF S FW+SLQDALG++L S+A+HPQ+DG SER
Sbjct: 641 RLAQVYLDEIVRLHGVPTSIVSDRDTRFVSHFWRSLQDALGTRLDFSTAFHPQSDGQSER 700
Query: 624 TIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFE 683
TIQ+LED+LR CV++ G W HLP+ EF YNNSY +SI MAPFE LYGR+CR+PL W E
Sbjct: 701 TIQTLEDMLRACVIDFQGGWSQHLPMAEFAYNNSYQASIKMAPFEALYGRKCRSPLHWSE 760
Query: 684 SGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMT 743
GES+ LGPD++ + KV++ RE++ +QSRQ+SY D+R++ LEFQ GDHVFL+V+P
Sbjct: 761 VGESLALGPDVLQEAEVKVRIARERLLTAQSRQRSYADRRRRDLEFQVGDHVFLKVSPTR 820
Query: 744 GVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLR 794
G+ R KL+P+FIGPY+I ERVG VAYR+ LPP+LS +H+VFHVS +R
Sbjct: 821 GIKRFGIRGKLSPRFIGPYEILERVGPVAYRLALPPNLSGVHNVFHVSVVR 871
>ref|XP_472504.1| OSJNBb0049I21.5 [Oryza sativa (japonica cultivar-group)]
gi|38346969|emb|CAE02265.2| OSJNBb0049I21.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1644
Score = 520 bits (1340), Expect = e-146
Identities = 243/347 (70%), Positives = 294/347 (84%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR LN+VTIKN+YPLPRIDDL DQL GA+VFSKIDL SGYHQ+K++ D+ KTAF TR
Sbjct: 686 VDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTGDIPKTAFSTR 745
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG Y++ VM FG+TNAP FM MN++F YLDKF+VVF DDILIYSK+EEEHAEH+++V
Sbjct: 746 YGLYKFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFMVVFIDDILIYSKDEEEHAEHLRLV 805
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
L+ L++ KLYAK SKCEFWL EV+FLGH+IS G+ VDP+KV+AV++W+ PKSVTEIRSF
Sbjct: 806 LEKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPTKVEAVTEWKAPKSVTEIRSF 865
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRFIEGFS +A P+TQL K K FVW QC+ SF +LK +LT+APIL+LP
Sbjct: 866 LGLAGYYRRFIEGFSMIARPMTQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIR 925
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ FV+YCDAS+ GLGGVLMQDGKVVAYASRQLR HE+NYPTHDLELAAVV LKIWRHYL
Sbjct: 926 KDFVIYCDASRQGLGGVLMQDGKVVAYASRQLRPHEENYPTHDLELAAVVHALKIWRHYL 985
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
G+ ++++DHKSLKY+F Q +LN+RQRRWLEL+KD D ++YHPGK
Sbjct: 986 IGNHCDIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDLEVHYHPGK 1032
Score = 207 bits (527), Expect = 1e-51
Identities = 109/273 (39%), Positives = 166/273 (59%), Gaps = 30/273 (10%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
A+LAE+Y+ I K+H +ALGS L S+AYHPQ DG +E
Sbjct: 1252 AKLAELYMTRIEKVH-----------------------EALGSYLAFSTAYHPQTDGQTE 1288
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
RT Q L+D+LR C L+ W+ L EF+YNNS+ +S+ M+P E L+GRRCRTPL W
Sbjct: 1289 RTNQVLDDMLRACALDFSKDWERCLSYAEFSYNNSFQASLKMSPNEALFGRRCRTPLMWS 1348
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
E+GE + G D++ + EKV++IR+++ KSY D R++ LEF+EGD+V+L+V+P+
Sbjct: 1349 ETGERAVFGLDIIQEAEEKVRLIRDRL-------KSYADTRRRNLEFKEGDYVYLKVSPL 1401
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
G R KL P+++ P+QI+ R G VAY++ LP +++++H VFHVS+L+K +
Sbjct: 1402 RGTKRFKVKGKLAPRYVEPFQINARRGEVAYQLQLPENIADVHPVFHVSELKKCLRVLEE 1461
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGK 835
++ + ++LT P+RI K+ R K
Sbjct: 1462 QATLEEIHISNDLTYPEHPVRILDEAEKRTRMK 1494
>gb|AAO45752.1| pol protein [Cucumis melo]
Length = 923
Score = 518 bits (1335), Expect = e-145
Identities = 242/347 (69%), Positives = 289/347 (82%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
IDYR+LNKVT+KNRYPLPRIDDL DQL GA VFSKIDL SGYHQ+++KDED+ KTAFR+R
Sbjct: 47 IDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSR 106
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YGHY++ VM FG+TNAP VFM+ MNR+F +LD FV+VF DDILIYSK E EH EH+++V
Sbjct: 107 YGHYQFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMV 166
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
LQ L++ KLYAK SKCEFWL +VSFLGH++S +G+ VDP+K++AV+ W P +V+E+RSF
Sbjct: 167 LQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSF 226
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRF+E FS++A PLTQLT KG FVW CE+SF LK++L TAP+L +P
Sbjct: 227 LGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGS 286
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
FV+Y DASK GLG VLMQ GKVVAYASRQL+ HE+NYPTHDLELAAVVF LKIWRHYL
Sbjct: 287 GNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYL 346
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
YG ++F+DHKSLKY F QKELNMRQRRWLEL+KD D + YHPGK
Sbjct: 347 YGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGK 393
Score = 360 bits (923), Expect = 1e-97
Identities = 175/309 (56%), Positives = 223/309 (71%)
Query: 560 FPVAQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADG 619
+ ++ A++Y+ IV+LHGVP SIVSDR+ RFTS+FWK LQ A+G++L S+A+HPQ DG
Sbjct: 613 YTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDG 672
Query: 620 HSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPL 679
+ER Q LED+LR C LE G+WDSHL L+EF YNNSY ++IGMAPFE LYGR CR+P+
Sbjct: 673 QTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPV 732
Query: 680 CWFESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRV 739
CW E GE L+GP+LV T E +Q IR +M +QSRQKSY D R+K LEF+ GD VFL+V
Sbjct: 733 CWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKV 792
Query: 740 TPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVAD 799
PM GV R + KL+P+F+GP++I ER+G VAYR+ LPP LS +HDVFHVS LRKYV D
Sbjct: 793 APMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPD 852
Query: 800 PSHVIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESK 859
PSHV+ +++ +NL+ P+ + R VK LR K IPLVKV+ E TWE E
Sbjct: 853 PSHVVDYEPLEIDENLSYVEQPVEVLARGVKTLRNKQIPLVKVLWRNHRVEEATWEREDD 912
Query: 860 MLESYPELF 868
M YPELF
Sbjct: 913 MRSRYPELF 921
>gb|AAT38744.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1515
Score = 518 bits (1333), Expect = e-145
Identities = 242/347 (69%), Positives = 285/347 (81%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
IDYRQLNKVTIKN+YPLPRIDDL DQL GA FSKIDL SGYHQ++V++ D+ KTAFRTR
Sbjct: 712 IDYRQLNKVTIKNKYPLPRIDDLFDQLQGATCFSKIDLRSGYHQLRVRERDIPKTAFRTR 771
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YGHYE+ VM FG+TNAP FM+ MNR+F YLD FV++F DDILIYS+NEE+HA H++ V
Sbjct: 772 YGHYEFLVMSFGLTNAPAAFMDLMNRVFRPYLDMFVIIFIDDILIYSRNEEDHASHLRTV 831
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
LQ LK+K+LYAK SKCEFWL V+FLGHI+SG GI VD K++AV W P S TEIRSF
Sbjct: 832 LQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTRKIEAVQNWPRPTSPTEIRSF 891
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRF+EGFS +A PLT+LT K F W CE SF ELK+RL TAP+L LP+
Sbjct: 892 LGLAGYYRRFVEGFSSIASPLTKLTQKTGKFQWSEACEKSFQELKKRLITAPVLTLPEGT 951
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ VVYCDAS++GLG VLMQ+GKV+AYASRQL++HEKNYPTHDLELA VVF LK+WRHYL
Sbjct: 952 QGLVVYCDASRIGLGCVLMQNGKVIAYASRQLKVHEKNYPTHDLELAVVVFALKLWRHYL 1011
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
YG ++F+DHKSL+Y+ QKELN+RQRRWLELLKD D + YHPGK
Sbjct: 1012 YGVHVDIFTDHKSLQYVLTQKELNLRQRRWLELLKDYDLSILYHPGK 1058
Score = 290 bits (742), Expect = 1e-76
Identities = 136/227 (59%), Positives = 180/227 (78%)
Query: 566 AEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSERTI 625
A++YI IV+LHGVP SI+SDR +FT++FWKS Q LGSK+ +S+A+HPQ DG +ERTI
Sbjct: 1287 AKLYIQEIVRLHGVPISIISDRGAQFTAQFWKSFQKGLGSKVSLSTAFHPQTDGQAERTI 1346
Query: 626 QSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFESG 685
Q+LED+LR CV++ WD HLPLIEF YNNSYHSSI MAP+E LYGRRCR+P+ WFE G
Sbjct: 1347 QTLEDMLRACVIDFKSNWDDHLPLIEFAYNNSYHSSIQMAPYEALYGRRCRSPIGWFEVG 1406
Query: 686 ESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMTGV 745
E+ L+GPDLVHQ +EKV++I+E++K +QSRQKSY D R++ALEF+ D V+L+V+PM GV
Sbjct: 1407 EARLIGPDLVHQAMEKVKVIQERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKGV 1466
Query: 746 GRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQ 792
R K KL+P++IGPY+I +RVG+VAY + LP L+ + F +Q
Sbjct: 1467 MRFGKKGKLSPRYIGPYRIVQRVGSVAYELELPQELAAVKFCFFFTQ 1513
>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
Length = 1602
Score = 515 bits (1327), Expect = e-144
Identities = 241/347 (69%), Positives = 284/347 (81%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
IDYRQLNKVTIKN+YPLPRIDDL DQL GA FSKIDL SGYHQ++V++ D+ KTAFRTR
Sbjct: 718 IDYRQLNKVTIKNKYPLPRIDDLFDQLQGATCFSKIDLRSGYHQLRVRERDIPKTAFRTR 777
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YGHYE+ VM FG+TNAP FM+ MNR+F YLD FV++F DDILIYS+NEE+HA H++ V
Sbjct: 778 YGHYEFLVMSFGLTNAPAAFMDLMNRVFRPYLDMFVIIFIDDILIYSRNEEDHASHLRTV 837
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
LQ LK+K+LYAK SKCEFWL V+FLGHI+SG GI VD K++AV W P S TEIRSF
Sbjct: 838 LQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTRKIEAVQNWPRPTSPTEIRSF 897
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRF+EGFS +A PLT+LT K F W CE SF ELK+RL TAP+L LP+
Sbjct: 898 LGLAGYYRRFVEGFSSIASPLTKLTQKTGKFQWSEACEKSFQELKKRLITAPVLTLPEGT 957
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ VVYCDAS++GLG VLMQ+GKV+AYASRQL++HEKNYPTHDLELA VVF LK+WRHYL
Sbjct: 958 QGLVVYCDASRIGLGCVLMQNGKVIAYASRQLKVHEKNYPTHDLELAVVVFALKLWRHYL 1017
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
YG ++F+DHKSL+Y+ QK LN+RQRRWLELLKD D + YHPGK
Sbjct: 1018 YGVHVDIFTDHKSLQYVLTQKALNLRQRRWLELLKDYDLSILYHPGK 1064
Score = 364 bits (934), Expect = 8e-99
Identities = 171/303 (56%), Positives = 232/303 (76%)
Query: 566 AEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSERTI 625
A++YI IV+LHGVP SI+SDR +FT++FWKS Q LGSK+ +S+A+HPQ DG +ERTI
Sbjct: 1293 AKLYIQEIVRLHGVPISIISDRGAQFTAQFWKSFQKGLGSKVSLSTAFHPQTDGQAERTI 1352
Query: 626 QSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFESG 685
Q+LED+LR CV++ WD HLPLIEF YNNSYHSSI MAP+E LYGRRCR+P+ WFE G
Sbjct: 1353 QTLEDMLRACVIDFKSNWDDHLPLIEFAYNNSYHSSIQMAPYEALYGRRCRSPIGWFEVG 1412
Query: 686 ESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMTGV 745
E+ L+GPDLVHQ +EKV++I+E++K +QSRQKSY D R++ALEF+ D V+L+V+PM GV
Sbjct: 1413 EARLIGPDLVHQAMEKVKVIQERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKGV 1472
Query: 746 GRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIP 805
R K KL+P++IGPY+I +RVG+VAY + LP L+ +H VFH+S L+K + DPS ++P
Sbjct: 1473 MRFGKKGKLSPRYIGPYRIVQRVGSVAYELELPQELAAVHPVFHISMLKKCIGDPSLILP 1532
Query: 806 RADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLESYP 865
V+++DNL+ E +P++I R+V++LR KD+ VKV+ E TWE E M + YP
Sbjct: 1533 TESVKIKDNLSYEEVPVQILDRQVRRLRTKDVASVKVLWRNQFVEEATWEAEEDMKKRYP 1592
Query: 866 ELF 868
LF
Sbjct: 1593 HLF 1595
>ref|XP_471222.1| OSJNBb0016B03.11 [Oryza sativa (japonica cultivar-group)]
gi|38347555|emb|CAD39386.2| OSJNBb0016B03.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1374
Score = 514 bits (1325), Expect = e-144
Identities = 244/347 (70%), Positives = 287/347 (82%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR LN VTIKN+YPLPRIDDL DQL GA VFSKIDL SGYHQ+++K+ED+ KTAF TR
Sbjct: 587 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 646
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG +E VM FG+TNAP FM MN++F YLDKFVVVF DDILIYS+ +EEH EH+++
Sbjct: 647 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 706
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
L+ L+E +LYAK SKCEFWLSEV FLGH+IS G+ VDPS V++V+ W+ PK+V+EIRSF
Sbjct: 707 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 766
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRFIE FSK+A P+T+L K + W +CE SF ELK RL +APILILP P
Sbjct: 767 LGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKNRLVSAPILILPDPK 826
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ F VYCDASKLGLG VLMQDGKVVAYASRQLR HEKNYPTHDLELAAVV LKIWRHYL
Sbjct: 827 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYL 886
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
+G+ EV++DHKSLKY+F Q +LNMRQRRWLEL+KD D G++YHPGK
Sbjct: 887 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGK 933
Score = 150 bits (380), Expect = 1e-34
Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 2/224 (0%)
Query: 645 SHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFESGESVLLGPDLVHQTIEKVQM 704
+H ++ TY+ S + + MA L+G + E + G D++ + EKV++
Sbjct: 1141 AHFIPVKTTYSGSRLAELYMARIVCLHG--VPKKIVSDRGRERQVFGTDILREAEEKVKI 1198
Query: 705 IREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQI 764
I+E+++ +QSR KSY D R++ L F+EGD+V+LRVTP+ GV R KL P+F+GPY+I
Sbjct: 1199 IQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKI 1258
Query: 765 SERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRADVQVRDNLTIETLPLRI 824
R G VAY++ LP L+ +H+VFHVSQL+K + P+ ++V+++LT P+RI
Sbjct: 1259 VSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANIEQIEVQEDLTYVEKPIRI 1318
Query: 825 EYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLESYPELF 868
++ R + I KV + E TWE E ++ ++P LF
Sbjct: 1319 LETSERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPYLF 1362
Score = 35.4 bits (80), Expect = 8.2
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDR 587
++LAE+Y+ IV LHGVP IVSDR
Sbjct: 1153 SRLAELYMARIVCLHGVPKKIVSDR 1177
>ref|NP_917895.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1455
Score = 514 bits (1325), Expect = e-144
Identities = 244/347 (70%), Positives = 287/347 (82%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR LN VTIKN+YPLPRIDDL DQL GA VFSKIDL SGYHQ+++K+ED+ KTAF TR
Sbjct: 590 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 649
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG +E VM FG+TNAP FM MN++F YLDKFVVVF DDILIYS+ +EEH EH+++
Sbjct: 650 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 709
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
L+ L+E +LYAK SKCEFWLSEV FLGH+IS G+ VDPS V++V+ W+ PK+V+EIRSF
Sbjct: 710 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 769
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRFIE FSK+A P+TQL K + W +CE SF ELK RL +APILILP P
Sbjct: 770 LGLAGYYRRFIENFSKIAKPMTQLLQKDVKYKWSKECERSFQELKSRLISAPILILPDPK 829
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ F VYCDASKLGLG VLMQDGKVVAYASRQLR HEKNYPTHD+ELAAVV LKIWRHYL
Sbjct: 830 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVVHALKIWRHYL 889
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
+G+ EV++DHKSLKY+F Q +LNMRQRRWLEL+KD D G++YHPGK
Sbjct: 890 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGK 936
Score = 295 bits (754), Expect = 6e-78
Identities = 145/307 (47%), Positives = 202/307 (65%), Gaps = 18/307 (5%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
++LAE+Y+ IV LHGVP IVSDR +FTS FWK LQ+ +GSKL S+AYHPQ DG +E
Sbjct: 1156 SRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTE 1215
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
R Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+E LYGR+CRTPL W
Sbjct: 1216 RVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWD 1275
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
++GE + G D++ + EKV++I+E+++ +QSR KSY D R++ L F+EGD+V+LRVTP+
Sbjct: 1276 QTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPL 1335
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
GV R KL P+F+GPY+I R G VAY++ LP L+ +H+VFHVSQL+K
Sbjct: 1336 RGVHRFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKC------ 1389
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLE 862
L + T ++ ++ R + I KV + E TWE E ++
Sbjct: 1390 ------------LRVPTEEANLDQISERRTRNRVIRFCKVQWSNHSEEESTWEREDELKS 1437
Query: 863 SYPELFA 869
++P LFA
Sbjct: 1438 AHPHLFA 1444
>emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar-group)]
gi|50926829|ref|XP_473331.1| OSJNBa0091D06.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1762
Score = 514 bits (1325), Expect = e-144
Identities = 245/347 (70%), Positives = 290/347 (82%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
IDYR LN+VTIKN+YPLPRIDDL DQL GARVFSKIDL SGYHQ+K++ ED+ KTAF TR
Sbjct: 890 IDYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQLKIRSEDIPKTAFSTR 949
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG YE+ VM FG+TNAP FM MN+IF YLD+FVVVF DDILIYSKNEEEHAEH++++
Sbjct: 950 YGLYEFTVMSFGLTNAPAFFMNLMNKIFMEYLDQFVVVFIDDILIYSKNEEEHAEHLRLI 1009
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
++ L++ +L+AK SKCEFWL V+FLGH+IS +G+ VDPSKV+AV W PK+V+EIRSF
Sbjct: 1010 MEKLRDHQLFAKFSKCEFWLDRVAFLGHVISSNGVEVDPSKVEAVLAWNPPKNVSEIRSF 1069
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRFIEGFSKLA P+T+L K K F W A CE+SF E+K+RLTTAP+L LP
Sbjct: 1070 LGLAGYYRRFIEGFSKLARPMTELLKKEKKFQWSAACEDSFQEMKKRLTTAPVLTLPDIR 1129
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ F ++CDAS+ GLG VLMQ+ KVVAYASRQLR HE NYPTHDLELAAVV LKIWRHYL
Sbjct: 1130 KDFEIFCDASRQGLGCVLMQERKVVAYASRQLRPHEANYPTHDLELAAVVHALKIWRHYL 1189
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
G+ EV++DHKSLKY+F Q ELNMRQRRWLEL+KD D G++YHPGK
Sbjct: 1190 IGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGK 1236
Score = 301 bits (772), Expect = 5e-80
Identities = 143/304 (47%), Positives = 208/304 (68%)
Query: 564 QLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSER 623
+LAE+Y+ ++V G P IVSDR +FTSRFWK L +ALG+ L S+AYHPQ DG +ER
Sbjct: 1457 KLAELYMTHVVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTER 1516
Query: 624 TIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFE 683
Q LED+LR C L+ G WD LP EF+YNNSY +SI M+P ++GR+CRTPLCW E
Sbjct: 1517 VNQILEDMLRACALDFEGTWDRCLPYAEFSYNNSYQASIQMSPNGAMFGRKCRTPLCWNE 1576
Query: 684 SGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMT 743
GE+++ GPD++ E+V++IRE++K +Q+RQK+Y D R++ LEF++GDHV+LRV+P+
Sbjct: 1577 VGEALVFGPDILKSAEEQVKLIRERLKTAQNRQKNYADNRRRDLEFEKGDHVYLRVSPLR 1636
Query: 744 GVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHV 803
G+ R S KL P++IGPY I+ R G VAY++ LP L+++H+VFHVSQL+K + P
Sbjct: 1637 GMRRFGMSGKLAPRYIGPYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQ 1696
Query: 804 IPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLES 863
+P ++++ NLT + P+++ ++ R K I KV + + TWE E +
Sbjct: 1697 VPLGNIELEKNLTYKERPIKVLEEAERQTRRKTIKFYKVQWSNHSEDEATWEQEDLLRAE 1756
Query: 864 YPEL 867
+PEL
Sbjct: 1757 FPEL 1760
>gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532908|ref|NP_920756.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1679
Score = 514 bits (1324), Expect = e-144
Identities = 244/347 (70%), Positives = 287/347 (82%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR LN VTIKN+YPLPRIDDL DQL GA VFSKIDL SGYHQ+++K+ED+ KTAF TR
Sbjct: 560 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 619
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG +E VM FG+TNAP FM MN++F YLDKFVVVF DDILIYS+ +EEH EH+++
Sbjct: 620 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 679
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
L+ L+E +LYAK SKCEFWLSEV FLGH+IS G+ VDPS V++V+ W+ PK+V+EIRSF
Sbjct: 680 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 739
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRFIE FSK+A P+T+L K + W +CE SF ELK RL +APILILP P
Sbjct: 740 LGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKNRLISAPILILPDPK 799
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ F VYCDASKLGLG VLMQDGKVVAYASRQLR HEKNYPTHDLELAAVV LKIWRHYL
Sbjct: 800 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYL 859
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
+G+ EV++DHKSLKY+F Q +LNMRQRRWLEL+KD D G++YHPGK
Sbjct: 860 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGK 906
Score = 283 bits (725), Expect = 1e-74
Identities = 132/239 (55%), Positives = 178/239 (74%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
++LAE+Y+ IV LHGVP IVSDR +FTS FWK LQ+ +GSKL S+AYHPQ DG +E
Sbjct: 1126 SRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTE 1185
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
R Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+E LYGR+CRTPL W
Sbjct: 1186 RVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWD 1245
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
++GE + G D++ + EKV++I+E+++ +QSR KSY D R++ L F+EGD+V+LRVTP
Sbjct: 1246 QTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPF 1305
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPS 801
GV R KL P+F+GPY+I R G VAY++ LP L+ +H+VFHVSQL+K + PS
Sbjct: 1306 RGVHRFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKSLRIPS 1364
>gb|AAP52803.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532428|ref|NP_920516.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21672044|gb|AAM74406.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881659|gb|AAM01060.1| Putative retroelement [Oryza
sativa]
Length = 986
Score = 514 bits (1324), Expect = e-144
Identities = 242/348 (69%), Positives = 293/348 (83%)
Query: 1 TIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRT 60
++DY LN+VTIKN+YPLPRIDDL D L GA+VFSKIDL SGYHQ+K++ D+ KTAF T
Sbjct: 111 SVDYCSLNEVTIKNKYPLPRIDDLFDLLKGAKVFSKIDLRSGYHQLKIRTGDILKTAFST 170
Query: 61 RYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKI 120
YG YE+ VM FG+TNAP FM MN++F YLDKFVVVF DDILIYSK+EEEHA+H+++
Sbjct: 171 HYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAKHLRL 230
Query: 121 VLQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRS 180
VL+ L++ KLYAK SKCEFWL EV+FLGHIIS G+VVDP+KV+A+++W+ PKSVTEIRS
Sbjct: 231 VLEKLRKHKLYAKFSKCEFWLKEVAFLGHIISAGGVVVDPAKVEAITEWKAPKSVTEIRS 290
Query: 181 FLGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKP 240
FLGLAGYYRRFIEGFSK+A P+TQL K K FVW QC+ SF +LK +LT+APIL+LP
Sbjct: 291 FLGLAGYYRRFIEGFSKIARPMTQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDI 350
Query: 241 DEPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHY 300
+ FV+YCDAS+ GLGGVLMQDGKVVAYASRQLR HE+NYPTHDLELAAVV LKIWRHY
Sbjct: 351 RKDFVIYCDASRQGLGGVLMQDGKVVAYASRQLRPHEENYPTHDLELAAVVHALKIWRHY 410
Query: 301 LYGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
L G+ ++++D KSLKY+F Q +LN+RQRRWLEL+KD D ++YHPGK
Sbjct: 411 LIGNHCDIYTDDKSLKYIFTQSDLNLRQRRWLELIKDYDLEVHYHPGK 458
Score = 290 bits (741), Expect = 2e-76
Identities = 143/306 (46%), Positives = 201/306 (64%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
A+LAE+Y+ IV LHGVP I+SDR +FTS FW+ + +ALGS L S+AYHPQ DG ++
Sbjct: 678 AKLAELYMTRIVCLHGVPKRIISDRGTQFTSHFWEKVHEALGSYLAFSTAYHPQTDGQNK 737
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
RT Q LED+LR C L+ W+ LP EF+Y NS+ +S+ M+P E L+GRRCRTPL W
Sbjct: 738 RTNQVLEDMLRACALDFSKDWERCLPYAEFSYKNSFQASLKMSPNEALFGRRCRTPLMWS 797
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
E+GE V+ GPD+V + EKV +IR+++K QSRQKSY D R++ LEF+EGD+V+L+V+ M
Sbjct: 798 ETGERVVFGPDIVKEAKEKVHLIRDRLKMVQSRQKSYADTRRRNLEFKEGDYVYLKVSSM 857
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
R KL P+++GP+QI R G V Y++ LP +++++H VFHVSQL+K + P
Sbjct: 858 RITKRFKVKGKLAPRYVGPFQIMARRGEVIYQLQLPKNIADVHPVFHVSQLKKCLRVPEE 917
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLE 862
P ++ + ++LT P+RI K+ R K + KV T + TWE E +
Sbjct: 918 QAPLEEIHISNDLTYPEQPIRILDEAKKRTRSKVWRMYKVQWSNHTEDEATWESEEFLRT 977
Query: 863 SYPELF 868
YP LF
Sbjct: 978 EYPHLF 983
>emb|CAD39969.2| OSJNBa0072D08.2 [Oryza sativa (japonica cultivar-group)]
gi|50922163|ref|XP_471442.1| OSJNBa0072D08.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1712
Score = 514 bits (1324), Expect = e-144
Identities = 244/347 (70%), Positives = 287/347 (82%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR LN VTIKN+YPLPRIDDL DQL GA VFSKIDL SGYHQ+++K+ED+ KTAF TR
Sbjct: 829 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 888
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG +E VM FG+TNAP FM MN++F YLDKFVVVF DDILIYS+ +EEH EH+++
Sbjct: 889 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 948
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
L+ L+E +LYAK SKCEFWLSEV FLGH+IS G+ VDPS V++V+ W+ PK+V+EIRSF
Sbjct: 949 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 1008
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRFIE FSK+A P+TQL K + W +C+ SF ELK RL +APILILP P
Sbjct: 1009 LGLAGYYRRFIENFSKIAKPMTQLLQKDVKYKWSEECKQSFQELKNRLISAPILILPDPK 1068
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ F VYCDASKLGLG VLMQDGKVVAYASRQLR HEKNYPTHDLELAAVV LKIWRHYL
Sbjct: 1069 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYL 1128
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
+G+ EV++DHKSLKY+F Q +LNMRQRRWLEL+KD D G++YHPGK
Sbjct: 1129 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGK 1175
Score = 306 bits (783), Expect = 2e-81
Identities = 147/307 (47%), Positives = 211/307 (67%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
++LAE+Y+ IV LHGVP IVSDR +FTS FWK LQ+ +GSKL S+AYHPQ DG +E
Sbjct: 1395 SRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTE 1454
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
+ Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+E LYGR+CRTPL W
Sbjct: 1455 KVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWD 1514
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
++GE + G D++ + EKV++I+E+++ +QSR KSY ++ L F+EGD+V+LRVTP+
Sbjct: 1515 QTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYAYNCRRDLSFEEGDYVYLRVTPL 1574
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
GV R KL P+F+GPY+I R G VAY++ LP L+ +H+VFHVSQL+K + P+
Sbjct: 1575 RGVHRFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTE 1634
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLE 862
++V+++LT P+RI + ++ R + I KV + E TWE E ++
Sbjct: 1635 EANLEQIEVQEDLTYVEKPIRILEIDERRTRNRVIRFCKVQWSNHSEEESTWEREEELKS 1694
Query: 863 SYPELFA 869
++P LFA
Sbjct: 1695 AHPHLFA 1701
>gb|AAV31378.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|54287530|gb|AAV31274.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1400
Score = 514 bits (1324), Expect = e-144
Identities = 244/347 (70%), Positives = 287/347 (82%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR LN VTIKN+YPLPRIDDL DQL GA VFSKIDL SGYHQ+++K+ED+ KTAF TR
Sbjct: 590 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 649
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG +E VM FG+TNAP FM MN++F YLDKFVVVF DDILIYS+ +EEH EH+++
Sbjct: 650 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 709
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
L+ L+E +LYAK SKCEFWLSEV FLGH+IS G+ VDPS V++V+ W+ PK+V+EIRSF
Sbjct: 710 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 769
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRFIE FSK+A P+T+L K + W +CE SF ELK RL +APILILP P
Sbjct: 770 LGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKNRLISAPILILPDPK 829
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ F VYCDASKLGLG VLMQDGKVVAYASRQLR HEKNYPTHDLELAAVV LKIWRHYL
Sbjct: 830 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYL 889
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
+G+ EV++DHKSLKY+F Q +LNMRQRRWLEL+KD D G++YHPGK
Sbjct: 890 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGK 936
Score = 281 bits (718), Expect = 9e-74
Identities = 131/239 (54%), Positives = 177/239 (73%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
++LAE+Y+ IV HGVP IVSDR +FTS FWK LQ+ +GSKL S+AYHPQ DG +E
Sbjct: 1156 SRLAELYMARIVCSHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTE 1215
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
R Q LED+LR C L+ GG+WD +LP EF+YNNSY +SI MAP+E LYGR+CRTPL W
Sbjct: 1216 RVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWD 1275
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
++GE + G D++ + EKV++I+E+++ +QSR KSY D R++ L F+EGD+V+LRVTP
Sbjct: 1276 QTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPF 1335
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPS 801
GV R KL P+F+GPY+I R G VAY++ LP L+ +H+VFHVSQL+K + P+
Sbjct: 1336 RGVHRFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPT 1394
>gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531994|ref|NP_920299.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22857578|gb|AAN09852.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1715
Score = 514 bits (1323), Expect = e-144
Identities = 244/347 (70%), Positives = 287/347 (82%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR LN VTIKN+YPLPRIDDL DQL GA VFSKIDL SGYHQ+++K+ED+ KTAF TR
Sbjct: 832 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 891
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG +E VM FG+TNAP FM MN++F YLDKFVVVF DDILIYS+ +EEH EH+++
Sbjct: 892 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 951
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
L+ L+E +LYAK SKCEFWLSEV FLGHIIS G+ VDPS V++V+ W+ PK+V+EIRSF
Sbjct: 952 LEKLREHQLYAKFSKCEFWLSEVKFLGHIISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 1011
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRFIE FSK+A P+T+L K + W +CE SF ELK RL +APILILP P
Sbjct: 1012 LGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISAPILILPDPK 1071
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ F VYCDASKLGLG VLMQDGKVVAYASRQLR HEKNYPTHD+ELAAVV LKIWRHYL
Sbjct: 1072 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVVHALKIWRHYL 1131
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
+G+ EV++DHKSLKY+F Q +LNMRQRRWLEL+KD D G++YHPGK
Sbjct: 1132 FGTRTEVYTDHKSLKYIFTQSDLNMRQRRWLELIKDYDMGIHYHPGK 1178
Score = 313 bits (802), Expect = 2e-83
Identities = 150/307 (48%), Positives = 212/307 (68%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
++LAE+Y+ IV LHGVP IVSDR +FTS FWK LQ+ +GSKL S+AYHPQ DG +E
Sbjct: 1398 SRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTE 1457
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
R Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+E LYGR+CRTPL W
Sbjct: 1458 RVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWD 1517
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
++GE + G D++ + EKV++I+E+++ +QSR KSY D R++ L F+EGD+V+LRVTP+
Sbjct: 1518 QTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPL 1577
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
GV R KL P+F+GPY+I R G VAY++ LP L+ +H+VFHVSQL+K + P+
Sbjct: 1578 RGVHRFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTE 1637
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLE 862
++V+++LT P+RI ++ R + I KV + E TWE E ++
Sbjct: 1638 EANIEQIEVQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKS 1697
Query: 863 SYPELFA 869
++P LFA
Sbjct: 1698 AHPHLFA 1704
>gb|AAP52185.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531192|ref|NP_919898.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20177640|gb|AAM14695.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1680
Score = 514 bits (1323), Expect = e-144
Identities = 244/347 (70%), Positives = 287/347 (82%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR LN VTIKN+YPLPRIDDL DQL GA VFSKIDL SGYHQ+++K+ED+ KTAF TR
Sbjct: 797 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 856
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG +E VM FG+TNAP FM MN++F YLDKFVVVF DDILIYSK +EEH EH+++
Sbjct: 857 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLA 916
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
L+ L+E +LYAK SKCEFWLSEV FLGH+IS G+ VDPS V++V+ W+ PK+V+EIRSF
Sbjct: 917 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 976
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYR+FIE FSK+A P+T+L K + W +CE SF ELK RL +APILILP P
Sbjct: 977 LGLAGYYRKFIENFSKIAKPMTRLFQKDVKYKWSEECEQSFQELKNRLISAPILILPDPK 1036
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ F VYCDASKLGLG VLMQDGKVVAYASRQLR HEKNYPTHDLELAAVV LKIWRHYL
Sbjct: 1037 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYL 1096
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
+G+ EV++DHKSLKY+F Q +LNMRQRRWLEL+KD D G++YHPGK
Sbjct: 1097 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGK 1143
Score = 313 bits (801), Expect = 2e-83
Identities = 150/307 (48%), Positives = 212/307 (68%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
++LAE+Y+ IV LHGVP IVSDR +FTS FWK LQ+ +GSKL S+AYHPQ DG +E
Sbjct: 1363 SRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTE 1422
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
R Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+E LYGR+CRTPL W
Sbjct: 1423 RVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWD 1482
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
++GE + G D++ + EKV++I+E+++ +QSR KSY D R++ L F+EGD+V+LRVTP+
Sbjct: 1483 QTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPL 1542
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
GV R KL P+F+GPY+I R G VAY++ LP L+ +H+VFHVSQL+K + P+
Sbjct: 1543 RGVHRFHTKGKLVPRFVGPYKIVSRRGEVAYQLELPQSLAEVHNVFHVSQLKKCLRVPTE 1602
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLE 862
++V+++LT P+RI ++ R + I KV + E TWE E ++
Sbjct: 1603 EANLEQIEVQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKS 1662
Query: 863 SYPELFA 869
++P LFA
Sbjct: 1663 AHPYLFA 1669
>emb|CAE05388.1| OSJNBa0022F16.12 [Oryza sativa (japonica cultivar-group)]
gi|50930021|ref|XP_474538.1| OSJNBa0022F16.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1138
Score = 514 bits (1323), Expect = e-144
Identities = 244/347 (70%), Positives = 286/347 (82%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DY LN VTIKN+YPLPRIDDL DQL GA VFSKIDL SGYHQ+++K+ED+ KTAF TR
Sbjct: 255 VDYHALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 314
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG +E VM FG+TNAP FM MN++F YLDKFVVVF DDILIYS+ +EEH EH+++
Sbjct: 315 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 374
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
L+ L+E +LYAK SKCEFWLSEV FLGH+IS G+ VDPS V++V+ W+ PK+V+EIRSF
Sbjct: 375 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 434
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRFIE FSK+A P+T+L K + W +CE SF ELK RL TAPILILP P
Sbjct: 435 LGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKNRLITAPILILPDPK 494
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ F VYCDASKLGLG VLMQDGKVVAYASRQLR HEKNYPTHDLELAAVV LKIWRHYL
Sbjct: 495 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYL 554
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
+G+ EV++DHKSLKY+F Q +LNMRQRRWLEL+KD D G++YHPGK
Sbjct: 555 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGK 601
Score = 308 bits (789), Expect = 5e-82
Identities = 148/307 (48%), Positives = 210/307 (68%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
+ LAE+Y+ IV LHGVP IVSDR +FTS FWK LQ+ +GSKL S+AYHPQ DG +E
Sbjct: 821 SHLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTE 880
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
R Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+E LYG++C TPL W
Sbjct: 881 RVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGQKCCTPLLWD 940
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
++GE + G D++ + EKV++I+E+++ +QSR KSY D R++ L F+EGD+V+LRVTP+
Sbjct: 941 QTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYVDNRRRDLSFEEGDYVYLRVTPL 1000
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
GV R KL P+F+GPY+I R G VAY++ LP L+ +H+VFHVSQL+K + P+
Sbjct: 1001 RGVHRFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTE 1060
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLE 862
++V+++LT P+RI ++ R + I KV + E TWE E ++
Sbjct: 1061 EANLEQIEVQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKS 1120
Query: 863 SYPELFA 869
++P LFA
Sbjct: 1121 AHPHLFA 1127
>emb|CAD79705.1| hypothetical Gag-Pol polyprotein [Oryza sativa (indica
cultivar-group)]
Length = 1820
Score = 514 bits (1323), Expect = e-144
Identities = 245/347 (70%), Positives = 289/347 (82%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
IDYR LN+VTIKN+YPLPRIDDL DQL GARVFSKIDL SGYHQ+K++ ED+ KTAF TR
Sbjct: 949 IDYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQLKIRSEDIPKTAFSTR 1008
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG YE+ VM FG+TNAP FM MN+IF YLD+FVVVF DDILIYSKNEEEHAEH++++
Sbjct: 1009 YGLYEFTVMSFGLTNAPAFFMNLMNKIFMEYLDQFVVVFIDDILIYSKNEEEHAEHLRLI 1068
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
++ L++ +L+AK SKCEFWL V+FLGH+IS +G+ VDPSKV+AV W PK+V+EIRSF
Sbjct: 1069 MEKLRDHQLFAKFSKCEFWLDRVAFLGHVISSNGVEVDPSKVEAVLAWNPPKNVSEIRSF 1128
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRFIEGFSKLA P+T+L K K F W A CE SF E+K+RLTTAP+L LP
Sbjct: 1129 LGLAGYYRRFIEGFSKLARPMTELLKKEKKFQWSAACEGSFQEMKKRLTTAPVLTLPDIR 1188
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ F ++CDAS+ GLG VLMQ+ KVVAYASRQLR HE NYPTHDLELAAVV LKIWRHYL
Sbjct: 1189 KDFEIFCDASRQGLGCVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVVHALKIWRHYL 1248
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
G+ EV++DHKSLKY+F Q ELNMRQRRWLEL+KD D G++YHPGK
Sbjct: 1249 IGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGK 1295
Score = 295 bits (756), Expect = 3e-78
Identities = 141/304 (46%), Positives = 206/304 (67%)
Query: 564 QLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSER 623
+LAE+Y+ ++V G P IVSDR +FTSRFWK L +ALG+ L S+AYHPQ DG +ER
Sbjct: 1515 KLAELYMTHVVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTER 1574
Query: 624 TIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFE 683
Q LED+LR C L+ G WD LP EF+YNNSY ++I M+P E ++GR+CRTPLCW E
Sbjct: 1575 VNQILEDMLRACALDFEGTWDRCLPYAEFSYNNSYQANIQMSPNEAMFGRKCRTPLCWNE 1634
Query: 684 SGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMT 743
GE+++ GPD++ E+V++IR ++K +Q+RQK+Y D R++ LEF+ GDHV+LRV+P+
Sbjct: 1635 VGEALVFGPDILKSAEEQVKLIRGRLKTAQNRQKNYADNRRRDLEFETGDHVYLRVSPLR 1694
Query: 744 GVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHV 803
G+ R S KL P++IGPY I+ R G VAY++ LP L+++H+VFHVSQL+K + P
Sbjct: 1695 GMKRFGMSGKLAPRYIGPYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQ 1754
Query: 804 IPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLES 863
+ ++++ NLT + P+++ ++ R K I KV + + TWE E +
Sbjct: 1755 VLLGNIELERNLTYKERPIKVLEEAERQTRRKTIKFYKVQWSNHSEDEATWEREDLLRAE 1814
Query: 864 YPEL 867
+PEL
Sbjct: 1815 FPEL 1818
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.337 0.148 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,380,786,038
Number of Sequences: 2540612
Number of extensions: 55123889
Number of successful extensions: 231666
Number of sequences better than 10.0: 7146
Number of HSP's better than 10.0 without gapping: 2547
Number of HSP's successfully gapped in prelim test: 4599
Number of HSP's that attempted gapping in prelim test: 223145
Number of HSP's gapped (non-prelim): 9984
length of query: 869
length of database: 863,360,394
effective HSP length: 137
effective length of query: 732
effective length of database: 515,296,550
effective search space: 377197074600
effective search space used: 377197074600
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 80 (35.4 bits)
Medicago: description of AC121241.13