BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121241.11 + phase: 0 /pseudo
(175 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79809.1| T32E20.9 [Arabidopsis thaliana] 103 2e-21
gb|AAF67369.1| Hypothetical protein T15F17.a [Arabidopsis thaliana] 103 2e-21
emb|CAB81134.1| putative athila transposon protein [Arabidopsis ... 101 8e-21
gb|AAD20430.1| putative Athila retroelement ORF1 protein [Arabid... 100 2e-20
emb|CAB81142.1| AT4g08050 [Arabidopsis thaliana] gi|5724774|gb|A... 99 4e-20
gb|AAF67372.1| Hypothetical protein T15F17.d [Arabidopsis thaliana] 99 5e-20
gb|AAF63128.1| Similar to Athila ORF 1 [Arabidopsis thaliana] 99 7e-20
emb|CAA57397.1| unnamed protein product [Arabidopsis thaliana] g... 98 9e-20
gb|AAF67381.1| Hypothetical protein T15F17.m [Arabidopsis thaliana] 97 1e-19
gb|AAM15150.1| putative Athila retroelement ORF1 protein [Arabid... 97 2e-19
gb|AAD23706.1| putative Athila retroelement ORF1 protein [Arabid... 97 2e-19
gb|AAF63125.1| Similar to Athila ORF 1 [Arabidopsis thaliana] gi... 96 3e-19
gb|AAD19759.1| putative Athila retroelement ORF1 protein [Arabid... 94 2e-18
gb|AAD15357.1| putative Athila retroelement ORF1 protein [Arabid... 94 2e-18
emb|CAB77937.1| putative athila transposon protein [Arabidopsis ... 92 6e-18
gb|AAB18645.1| unknown [Hordeum vulgare] gi|7489374|pir||T06196 ... 92 8e-18
gb|AAM15284.1| putative Athila retroelement ORF1 protein [Arabid... 91 1e-17
gb|AAC13587.1| contains similarity to retrotransposon-like prote... 85 1e-15
gb|AAX92771.1| Transposable element protein, putative [Oryza sat... 84 2e-15
ref|XP_474896.1| OSJNBa0021F22.23 [Oryza sativa (japonica cultiv... 83 4e-15
>gb|AAF79809.1| T32E20.9 [Arabidopsis thaliana]
Length = 1586
Score = 103 bits (258), Expect = 2e-21
Identities = 55/109 (50%), Positives = 72/109 (65%), Gaps = 3/109 (2%)
Query: 20 DAILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAV 76
+ I+ P V+ NNFEIKS LI +VQ N+F G P EDP H+ F RL K N ++
Sbjct: 59 NGIVPPPVQNNNFEIKSGLIAMVQSNKFHGLPMEDPLDHLDEFDRLCSLTKINRVSEDGF 118
Query: 77 RLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
+L LFPFSL D+A W SL GSI SW+ +KAFL++FF +S+TA+LR
Sbjct: 119 KLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSNSRTARLR 167
>gb|AAF67369.1| Hypothetical protein T15F17.a [Arabidopsis thaliana]
Length = 703
Score = 103 bits (258), Expect = 2e-21
Identities = 55/109 (50%), Positives = 72/109 (65%), Gaps = 3/109 (2%)
Query: 20 DAILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAV 76
+ I+ P V+ NNFEIKS LI +VQ N+F G P EDP H+ F RL K N ++
Sbjct: 27 NGIVPPPVQNNNFEIKSGLIAMVQSNKFHGLPMEDPLDHLDEFDRLCSLTKINGVSEDGF 86
Query: 77 RLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
+L LFPFSL D+A W SL GSI SW+ +KAFL++FF +S+TA+LR
Sbjct: 87 KLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSNSRTARLR 135
>emb|CAB81134.1| putative athila transposon protein [Arabidopsis thaliana]
gi|25354974|pir||B85075 probable athila transposon
protein [imported] - Arabidopsis thaliana
Length = 866
Score = 101 bits (252), Expect = 8e-21
Identities = 52/109 (47%), Positives = 71/109 (64%), Gaps = 3/109 (2%)
Query: 20 DAILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAV 76
+ I P ++ NNFEIKS LI ++Q N+F+G P EDP H+ F RL K N +
Sbjct: 27 EGIAPPAIQNNNFEIKSGLISMIQGNKFYGLPMEDPLDHLDEFDRLCNLTKINGVSADGF 86
Query: 77 RLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
+L LFPFSL D+A W +L SII+WD +KAFLS+FF +++TA+LR
Sbjct: 87 KLRLFPFSLGDKAHIWEKNLPHDSIITWDDCKKAFLSKFFSNARTARLR 135
>gb|AAD20430.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25411482|pir||C84506 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 622
Score = 100 bits (248), Expect = 2e-20
Identities = 55/109 (50%), Positives = 72/109 (65%), Gaps = 3/109 (2%)
Query: 20 DAILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAV 76
+ I P VE NNFEIKS+LI +VQ ++F G EDP H+ F L T+K N ++A
Sbjct: 45 NGIQAPPVENNNFEIKSSLINMVQTSKFHGLSMEDPLDHLEQFDMLCSTVKINGISEDAF 104
Query: 77 RLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
+L LFPFSL DRA W +L SI SWDQ ++AFLS+FF ++TA+LR
Sbjct: 105 KLRLFPFSLGDRARIWEKNLPQRSITSWDQCKRAFLSKFFSTTRTARLR 153
>emb|CAB81142.1| AT4g08050 [Arabidopsis thaliana] gi|5724774|gb|AAD48078.1| contains
similarity to retrotransposons; may be a pseudogene
[Arabidopsis thaliana] gi|25354718|pir||C85079
hypothetical protein AT4g08050 [imported] - Arabidopsis
thaliana
Length = 1428
Score = 99.4 bits (246), Expect = 4e-20
Identities = 54/120 (45%), Positives = 73/120 (60%), Gaps = 8/120 (6%)
Query: 14 SSDEPYD-----AILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGT 68
+ D P D I P ++ NNFEIKS LI ++Q N+F G P EDP H+ F RL
Sbjct: 16 AGDAPRDHRQRKGIAPPAIQNNNFEIKSGLISMIQGNKFHGLPMEDPLDHLDEFDRLCNL 75
Query: 69 LKAN---QEAVRLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
K N ++ +L LFPFSL D+A W +L SI +WD +KAFLS+FF +++TA+LR
Sbjct: 76 TKINGVSEDGFKLRLFPFSLGDKAHIWEKNLSHDSITTWDDYKKAFLSKFFSNARTARLR 135
>gb|AAF67372.1| Hypothetical protein T15F17.d [Arabidopsis thaliana]
Length = 677
Score = 99.0 bits (245), Expect = 5e-20
Identities = 54/120 (45%), Positives = 73/120 (60%), Gaps = 8/120 (6%)
Query: 14 SSDEPYD-----AILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGT 68
+ D P D I P ++ NNFEIKS LI ++Q N+F G P EDP H+ F RL
Sbjct: 16 AGDAPRDHRQRKGIAPPAIQNNNFEIKSGLISMIQGNKFHGLPMEDPLDHLDEFNRLYNL 75
Query: 69 LKAN---QEAVRLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
K N ++ +L LFPFSL D+A W +L SI +WD +KAFLS+FF +++TA+LR
Sbjct: 76 TKINGVSEDGFKLRLFPFSLGDKAHMWEKNLPHDSITTWDDCKKAFLSKFFSNARTARLR 135
>gb|AAF63128.1| Similar to Athila ORF 1 [Arabidopsis thaliana]
Length = 780
Score = 98.6 bits (244), Expect = 7e-20
Identities = 49/107 (45%), Positives = 70/107 (64%), Gaps = 3/107 (2%)
Query: 22 ILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
I+ P ++ NNFEIKS LI ++Q N+F G P EDP H+ F R K N +++ +L
Sbjct: 29 IVPPLIQNNNFEIKSGLISMIQSNKFHGLPMEDPLDHLDNFDRFCSLTKINGVSEDSFKL 88
Query: 79 HLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
LFPFSL D A W +L + S+ +WD +KAFL++FF +S+TA+LR
Sbjct: 89 RLFPFSLGDEAHLWEKTLLVDSVDTWDDCKKAFLAKFFSNSRTARLR 135
>emb|CAA57397.1| unnamed protein product [Arabidopsis thaliana]
gi|2129618|pir||S66306 hypothetical protein 1 -
Arabidopsis thaliana retrotransposon Athila
Length = 935
Score = 98.2 bits (243), Expect = 9e-20
Identities = 53/107 (49%), Positives = 70/107 (64%), Gaps = 3/107 (2%)
Query: 22 ILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
I+ P V+ NNFEIKS LI +VQ N+F G EDP H+ F RL K N ++ +L
Sbjct: 61 IVPPPVQNNNFEIKSGLIAMVQGNKFHGLLMEDPLDHLDEFERLCRLTKINGVSEDGFKL 120
Query: 79 HLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
LFPFSL D+A W +L GSI +WD +KAFL++FF +S+TA+LR
Sbjct: 121 RLFPFSLGDKAHLWEKTLPHGSITTWDDCKKAFLAKFFSNSRTARLR 167
>gb|AAF67381.1| Hypothetical protein T15F17.m [Arabidopsis thaliana]
Length = 346
Score = 97.4 bits (241), Expect = 1e-19
Identities = 51/106 (48%), Positives = 69/106 (64%), Gaps = 3/106 (2%)
Query: 22 ILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
I+ P V+ NNF+IKS+LI +VQ N+F G P EDP H+ F RL K N ++ +L
Sbjct: 29 IVPPPVQNNNFKIKSSLIAMVQGNKFHGLPMEDPLDHLDEFERLCDLTKINGVSEDGFKL 88
Query: 79 HLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQL 124
LFPFSL D+A W +L GSI +WD +K FL +FF +S+TA+L
Sbjct: 89 RLFPFSLGDKAHLWEKTLPQGSITTWDDCKKVFLEKFFSNSRTARL 134
>gb|AAM15150.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354977|pir||A84486 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 1012
Score = 97.1 bits (240), Expect = 2e-19
Identities = 50/107 (46%), Positives = 71/107 (65%), Gaps = 3/107 (2%)
Query: 22 ILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
I+ P ++ NNF+IKS LI ++Q N+F G P EDP H+ F RL K N +E+ +L
Sbjct: 24 IVPPPIQNNNFKIKSDLISMIQGNKFHGLPMEDPLDHLDNFDRLCSLTKINGVSEESFKL 83
Query: 79 HLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
LFPFSL D+A W +L + SI +WD +KAFL++FF +S+ A+LR
Sbjct: 84 RLFPFSLGDKAHLWEKTLPVKSIDTWDDCKKAFLAKFFSNSRKARLR 130
>gb|AAD23706.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354979|pir||F84476 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 733
Score = 96.7 bits (239), Expect = 2e-19
Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Query: 25 PTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRLHLF 81
P ++ NNFEIKS LI ++Q N+F G P EDP H+ F RL K N ++ L LF
Sbjct: 32 PVIQNNNFEIKSGLISMIQGNKFHGLPMEDPLNHLDEFDRLCNLTKINGVIEDGFNLRLF 91
Query: 82 PFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLRIKSHSSLKK 134
PFSL +A W +L SI +WD +KAFLS+FF +++TA+LR + L+K
Sbjct: 92 PFSLGGKAHIWEKNLPHDSITTWDDCKKAFLSKFFSNARTARLRNEISGFLQK 144
>gb|AAF63125.1| Similar to Athila ORF 1 [Arabidopsis thaliana]
gi|25354973|pir||A96501 hypothetical protein F2J6.11
[imported] - Arabidopsis thaliana
Length = 823
Score = 96.3 bits (238), Expect = 3e-19
Identities = 49/107 (45%), Positives = 71/107 (65%), Gaps = 3/107 (2%)
Query: 22 ILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
I+ P ++ NNFEIKS LI ++Q N+F G P EDP H+ F RL K N +++ +L
Sbjct: 65 IVPPPIQNNNFEIKSGLISMIQSNKFHGLPMEDPLDHLDNFDRLCSLTKINGVSEDSFKL 124
Query: 79 HLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
LFPFSL D+A W +L + S+ + D +KAFL++FF +S+TA+LR
Sbjct: 125 RLFPFSLGDKAHLWEKTLPVDSVDTLDDCKKAFLAKFFSNSRTARLR 171
>gb|AAD19759.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354976|pir||E84475 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 750
Score = 94.0 bits (232), Expect = 2e-18
Identities = 52/120 (43%), Positives = 72/120 (59%), Gaps = 8/120 (6%)
Query: 14 SSDEPYD-----AILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGT 68
+SD P++ I+ P V+ NNFEIKS LI +VQ N+F G P ED H+ F RL
Sbjct: 16 ASDFPHNHNQRHGIVLPLVQNNNFEIKSGLIAMVQGNKFHGLPMEDSLDHLDEFERLCDL 75
Query: 69 LKAN---QEAVRLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
K N ++ + LFPFSL D+ W +L SI +WD +KAF ++FF +S+TA+LR
Sbjct: 76 TKINGVSEDGFKFRLFPFSLGDKTHLWEKTLPQNSITTWDDCKKAFFAKFFSNSRTARLR 135
>gb|AAD15357.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354975|pir||C84493 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 929
Score = 94.0 bits (232), Expect = 2e-18
Identities = 50/107 (46%), Positives = 68/107 (62%), Gaps = 3/107 (2%)
Query: 22 ILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
I+ V+ NNF+IKS LI +VQ N+F G P EDP H+ RL G K N ++ +L
Sbjct: 61 IVLRPVQNNNFKIKSGLIAMVQGNKFHGLPMEDPLDHLDELERLCGLTKINGVSEDGFKL 120
Query: 79 HLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
LFPFSL D+A W +L SI +WD + AFL++FF +S+TA+LR
Sbjct: 121 RLFPFSLGDKAHLWEKTLPKNSITTWDDCKMAFLAKFFSNSRTARLR 167
>emb|CAB77937.1| putative athila transposon protein [Arabidopsis thaliana]
gi|4325357|gb|AAD17354.1| contains similarity to
Arabidopsis thaliana retrotransposon Athila hypothetical
protein 1 (GB:X81801) gi|25407410|pir||H85076 probable
athila transposon protein [imported] - Arabidopsis
thaliana
Length = 446
Score = 92.0 bits (227), Expect = 6e-18
Identities = 50/107 (46%), Positives = 69/107 (63%), Gaps = 3/107 (2%)
Query: 22 ILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
I+ P V+ NNFEI S LI ++Q N+F G P EDP ++ F RL G K N ++ +L
Sbjct: 37 IVPPPVQINNFEIMSGLISMIQGNKFHGLPKEDPLDNLDSFDRLCGLTKINGVTKDMFKL 96
Query: 79 HLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
LFPFSL D+A W +L SI SWD +K FL++FF +++TA+LR
Sbjct: 97 RLFPFSLGDKAHHWKKTLPPDSITSWDDCKKDFLAKFFSNARTARLR 143
>gb|AAB18645.1| unknown [Hordeum vulgare] gi|7489374|pir||T06196 hypothetical
protein - barley
Length = 337
Score = 91.7 bits (226), Expect = 8e-18
Identities = 47/128 (36%), Positives = 75/128 (57%), Gaps = 3/128 (2%)
Query: 1 MAEKHALKEYAIISSDEPYDAILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVS 60
M E L +++ ++++ + P ++EI +AL+ LV + QF G P+ED H++
Sbjct: 1 MNENTKLCDFSNTNNNDFISTPIAPATNAESYEINAALLNLVMKEQFSGLPSEDVASHLN 60
Query: 61 IFLRLSGTLK---ANQEAVRLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFP 117
F+ L K + + ++L LFPFSLRDRA WF SL SI SWD+ + A++S++FP
Sbjct: 61 TFIELCDMQKKKDVDNDVIKLKLFPFSLRDRAKTWFSSLPKSSIDSWDKCKDAYISKYFP 120
Query: 118 HSKTAQLR 125
+K LR
Sbjct: 121 PAKIISLR 128
>gb|AAM15284.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|20197712|gb|AAM15220.1| putative Athila retroelement
ORF1 protein [Arabidopsis thaliana]
Length = 277
Score = 91.3 bits (225), Expect = 1e-17
Identities = 48/107 (44%), Positives = 67/107 (61%), Gaps = 3/107 (2%)
Query: 22 ILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
I+ P V+ NNFEIKS LI ++Q N+F G P +DP H+ F RL G N ++ +
Sbjct: 81 IVPPPVQNNNFEIKSGLISMIQGNKFHGLPMKDPLDHLDSFDRLCGLTNINGVTEDMFKQ 140
Query: 79 HLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
LFPFS+ D+A W +L SI SWD +KAFL++FF ++ T +LR
Sbjct: 141 RLFPFSVGDKAHHWEKTLPSDSITSWDDCKKAFLAKFFSNACTTRLR 187
>gb|AAC13587.1| contains similarity to retrotransposon-like proteins [Arabidopsis
thaliana] gi|7486622|pir||T01163 hypothetical protein
F7N22.15 - Arabidopsis thaliana
Length = 589
Score = 84.7 bits (208), Expect = 1e-15
Identities = 51/116 (43%), Positives = 67/116 (56%), Gaps = 7/116 (6%)
Query: 22 ILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
I+ P V+ NNFEIK LI ++Q N+F G P EDP H+ F RL G K N ++ +L
Sbjct: 37 IVPPPVQNNNFEIKIGLISMIQGNKFHGLPMEDPLDHLDSFDRLCGLTKINGVTEDMFKL 96
Query: 79 HLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLRIKSHSSLKK 134
LF FSL D+A W +L SI SWD +KAFL++ S+ +KS S KK
Sbjct: 97 RLFSFSLGDKAHHWEKTLPPDSITSWDDCKKAFLAK----SRYTTSLMKSTSKCKK 148
>gb|AAX92771.1| Transposable element protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 689
Score = 84.0 bits (206), Expect = 2e-15
Identities = 53/130 (40%), Positives = 75/130 (56%), Gaps = 10/130 (7%)
Query: 1 MAEKHALKEYAIISSDEPYDAILYPTVEGNN--FEIKSALIYLVQENQFFGSPTEDPNLH 58
MA K L+E+A S+D + + P V + F++KS+LI + Q + F G P ED N H
Sbjct: 1 MASK-TLREFAFPSAD---NVAVEPQVNIGDVDFDLKSSLIMMAQASLFCGKPNEDANAH 56
Query: 59 VSIFLRLSGTLK---ANQEAVRLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQF 115
+ FL + T + +AVRL LFPFSL RA WF++ ++ +WD+ AFLS+F
Sbjct: 57 LQQFLEICSTYTIKGVSPDAVRLRLFPFSLLGRAKQWFYA-NHAAVNTWDKCSTAFLSKF 115
Query: 116 FPHSKTAQLR 125
FP KT LR
Sbjct: 116 FPMGKTNALR 125
>ref|XP_474896.1| OSJNBa0021F22.23 [Oryza sativa (japonica cultivar-group)]
gi|58532094|emb|CAD40055.3| OSJNBa0085C10.7 [Oryza
sativa (japonica cultivar-group)]
gi|38346490|emb|CAE03729.2| OSJNBa0021F22.23 [Oryza
sativa (japonica cultivar-group)]
Length = 489
Score = 82.8 bits (203), Expect = 4e-15
Identities = 43/98 (43%), Positives = 61/98 (61%), Gaps = 4/98 (4%)
Query: 31 NFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLK---ANQEAVRLHLFPFSLRD 87
+F++KS+LI + Q + F G P ED N H+ FL + T + +AVRL LFPFSL
Sbjct: 29 DFDLKSSLITMAQASPFCGKPNEDANAHLQQFLEICSTYTIKGVSPDAVRLRLFPFSLLG 88
Query: 88 RASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
RA WF++ ++ +I +WD+ FLS+FFP KT LR
Sbjct: 89 RAKQWFYANRV-AINTWDKCSTTFLSKFFPMGKTKALR 125
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.326 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 265,791,713
Number of Sequences: 2540612
Number of extensions: 9433650
Number of successful extensions: 24684
Number of sequences better than 10.0: 339
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 24305
Number of HSP's gapped (non-prelim): 352
length of query: 175
length of database: 863,360,394
effective HSP length: 119
effective length of query: 56
effective length of database: 561,027,566
effective search space: 31417543696
effective search space used: 31417543696
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 70 (31.6 bits)
Medicago: description of AC121241.11