BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121241.10 + phase: 0 /pseudo
(330 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB75932.1| putative protein [Arabidopsis thaliana] gi|11278... 233 6e-60
gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Ar... 205 1e-51
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi... 205 1e-51
gb|AAP51797.1| putative copia-type polyprotein [Oryza sativa (ja... 134 4e-30
ref|XP_470746.1| putative gag-pol polyprotein [Oryza sativa] gi|... 133 8e-30
ref|XP_475746.1| putative polyprotein [Oryza sativa (japonica cu... 130 7e-29
gb|AAT38758.1| putative gag-pol polyprotein [Solanum demissum] 129 9e-29
gb|AAG60117.1| copia-type polyprotein, putative [Arabidopsis tha... 125 1e-27
gb|AAG50765.1| copia-type polyprotein, putative [Arabidopsis tha... 125 1e-27
gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25... 125 1e-27
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] gi... 125 1e-27
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 125 1e-27
emb|CAA69271.1| lectin receptor kinase [Arabidopsis thaliana] 125 1e-27
gb|AAF16534.1| T26F17.17 [Arabidopsis thaliana] 124 3e-27
gb|AAP46257.1| putative polyprotein [Oryza sativa (japonica cult... 121 3e-26
gb|AAF25964.2| F6N18.1 [Arabidopsis thaliana] 110 4e-23
gb|AAF20282.1| gag-pol polyprotein [Vitis vinifera] 109 1e-22
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi... 107 6e-22
gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsi... 104 4e-21
ref|NP_915040.1| P0471B04.27 [Oryza sativa (japonica cultivar-gr... 100 6e-20
>emb|CAB75932.1| putative protein [Arabidopsis thaliana] gi|11278365|pir||T47841
hypothetical protein T2O9.150 - Arabidopsis thaliana
Length = 1339
Score = 233 bits (594), Expect = 6e-60
Identities = 118/209 (56%), Positives = 153/209 (72%), Gaps = 2/209 (0%)
Query: 2 NDSSNFVHSIIPKFDGHYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQ-TEAQRKLI 60
+ S FV IP+FDG+YD W+M MENFLRS+E W L+E I + G +EAQR +
Sbjct: 2 SSSEKFVQPAIPRFDGYYDFWSMTMENFLRSRELWRLVEEGIPAIVVGTTPVSEAQRSAV 61
Query: 61 KEQKLMNLKTKNYLFQAISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRD 120
+E KL +LK KN+LFQAI ++LETIL+K T K IW+SMK + GS +V RAQLQALR++
Sbjct: 62 EEAKLKDLKVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKE 121
Query: 121 FEILHMKEGETINTYFSRTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEES 180
FE+L MKEGE I+T+ RTLT+ NKMK + E+M Q+ I KILRS+ K +YVVCSIEES
Sbjct: 122 FELLAMKEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEES 181
Query: 181 NNLDTMTIDELQSS-LVHEQRIKSNGEEE 208
N+L T++IDEL S LVHEQR+ + +EE
Sbjct: 182 NDLSTLSIDELHGSLLVHEQRLNGHVQEE 210
>gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Arabidopsis
thaliana] gi|25301683|pir||E86451 probable copia-type
polyprotein, 28768-32772 [imported] - Arabidopsis
thaliana
Length = 1334
Score = 205 bits (522), Expect = 1e-51
Identities = 107/199 (53%), Positives = 138/199 (68%), Gaps = 1/199 (0%)
Query: 11 IIPKFDGHYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNLKT 70
IIPKFDG Y+HWAM MEN +RSKE+WD+IE I E V T AQR + E+ + + K
Sbjct: 8 IIPKFDGDYEHWAMLMENLIRSKEWWDIIETGIPRPERNVILTGAQRTELAEKTVKDHKV 67
Query: 71 KNYLFQAISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKEGE 130
KNYLF +I +L+TIL K+T K++W+SMK + G++RV AQLQ LRR FE+L MK GE
Sbjct: 68 KNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEVLEMKIGE 127
Query: 131 TINTYFSRTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTIDE 190
TI YFSR + I N M+ E M + + EKILR++V K YVVC+IEESNN+ +T+D
Sbjct: 128 TITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNIKELTVDG 187
Query: 191 LQSSL-VHEQRIKSNGEEE 208
LQSSL VHEQ + + EE
Sbjct: 188 LQSSLMVHEQNLSRHDVEE 206
>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
thaliana]
Length = 1334
Score = 205 bits (522), Expect = 1e-51
Identities = 107/199 (53%), Positives = 138/199 (68%), Gaps = 1/199 (0%)
Query: 11 IIPKFDGHYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNLKT 70
IIPKFDG Y+HWAM MEN +RSKE+WD+IE I E V T AQR + E+ + + K
Sbjct: 8 IIPKFDGDYEHWAMLMENLIRSKEWWDIIETGIPRPERNVILTGAQRTELAEKTVKDHKV 67
Query: 71 KNYLFQAISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKEGE 130
KNYLF +I +L+TIL K+T K++W+SMK + G++RV AQLQ LRR FE+L MK GE
Sbjct: 68 KNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEVLEMKIGE 127
Query: 131 TINTYFSRTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTIDE 190
TI YFSR + I N M+ E M + + EKILR++V K YVVC+IEESNN+ +T+D
Sbjct: 128 TITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNIKELTVDG 187
Query: 191 LQSSL-VHEQRIKSNGEEE 208
LQSSL VHEQ + + EE
Sbjct: 188 LQSSLMVHEQNLSRHDVEE 206
>gb|AAP51797.1| putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530416|ref|NP_919510.1| putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18542917|gb|AAL75752.1| Putative
copia-type polyprotein [Oryza sativa]
Length = 1350
Score = 134 bits (337), Expect = 4e-30
Identities = 72/193 (37%), Positives = 111/193 (57%), Gaps = 2/193 (1%)
Query: 10 SIIPKFDG-HYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNL 68
S++P F G +YD W++ M L S+ WD++EN AG T Q+K + E ++ +
Sbjct: 4 SMVPVFAGENYDIWSIKMRTLLLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSDA 63
Query: 69 KTKNYLFQAISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKE 128
K + Q ++ + I+ K WD +K F GS +V+ +LQ LRR F+ L MKE
Sbjct: 64 KALFLIQQGVAESLFPRIIGAKKSKEAWDKLKEEFQGSQKVLAVKLQTLRRQFQNLLMKE 123
Query: 129 GETINTYFSRTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTI 188
E + YF R + I N+M+ + E ++ + EKIL S+ K +Y+V +IEES +L T+TI
Sbjct: 124 SEKVKDYFPRVIEIVNQMRLYGEDINDQKVVEKILISLPEKYEYIVAAIEESKDLSTLTI 183
Query: 189 DELQSSL-VHEQR 200
+L SSL HE+R
Sbjct: 184 QQLMSSLESHEER 196
>ref|XP_470746.1| putative gag-pol polyprotein [Oryza sativa]
gi|18071369|gb|AAL58228.1| putative gag-pol polyprotein
[Oryza sativa]
Length = 1167
Score = 133 bits (334), Expect = 8e-30
Identities = 71/193 (36%), Positives = 112/193 (57%), Gaps = 2/193 (1%)
Query: 10 SIIPKFDG-HYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNL 68
S++P F G +YD W++ M L S+ WD++EN AG T Q+K + E ++ +
Sbjct: 4 SMVPVFAGENYDIWSIKMRTLLLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSDA 63
Query: 69 KTKNYLFQAISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKE 128
K + Q ++ + I+ K WD +K F GS +V+ +LQ LRR F+ L MKE
Sbjct: 64 KALFLIQQGVAESLFPRIIGAKKSKEAWDKLKEEFQGSQKVLAVKLQTLRRQFQNLLMKE 123
Query: 129 GETINTYFSRTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTI 188
E + YFSR + I N+++ + E ++ + E+IL S+ K +Y+V +IEES +L T+TI
Sbjct: 124 SEKVKDYFSRVIEIVNQIRLYGEDINDQKVVEEILISLPEKYEYIVAAIEESKDLSTLTI 183
Query: 189 DELQSSL-VHEQR 200
+L SSL HE+R
Sbjct: 184 QQLMSSLESHEER 196
>ref|XP_475746.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48843818|gb|AAT47077.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1136
Score = 130 bits (326), Expect = 7e-29
Identities = 70/193 (36%), Positives = 110/193 (56%), Gaps = 2/193 (1%)
Query: 10 SIIPKFDG-HYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNL 68
S++P F +YD W++ M L S+ WD++EN AG T Q+K + E ++ +
Sbjct: 4 SMVPVFARENYDIWSIKMRTLLLSQGLWDIVENGYQEYSAGETLTAEQKKSLVEDRMSDA 63
Query: 69 KTKNYLFQAISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKE 128
K + Q ++ + I+ K WD +K F S +V+ +LQ LRR F+ L MKE
Sbjct: 64 KALFLIQQGVAESLFPRIIGAKKSKEAWDKLKEEFQASQKVLAVKLQTLRRQFQNLQMKE 123
Query: 129 GETINTYFSRTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTI 188
E + YFSR + I N+M+ + E ++ + +KIL S+ K +Y+V +IEES +L T+TI
Sbjct: 124 SEKVKDYFSRVIEIVNQMRLYGEDINDQKVVKKILISLPEKYEYIVAAIEESKDLSTLTI 183
Query: 189 DELQSSL-VHEQR 200
+L SSL HE+R
Sbjct: 184 QQLMSSLESHEER 196
>gb|AAT38758.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1333
Score = 129 bits (325), Expect = 9e-29
Identities = 71/199 (35%), Positives = 117/199 (58%), Gaps = 11/199 (5%)
Query: 11 IIPKFDG-HYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNLK 69
+IP F G +Y W++ M+ +S+E WD +VE G+ + A + ++E + + K
Sbjct: 13 LIPIFRGENYQFWSLKMKTLFKSQELWD-------IVETGIPEGNANQ--MREHRKRDSK 63
Query: 70 TKNYLFQAISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKEG 129
+ QA+ ++ I +T K W+ +K + G ++VI +LQ LRRDFE L M E
Sbjct: 64 ALFTIQQALDDEIFPRISAVETSKQAWEILKQEYFGDDKVITVKLQTLRRDFETLFMNEN 123
Query: 130 ETINTYFSRTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTID 189
E++ Y SRT I N+M+++ E + I+ K+LRS+ +K ++VV +IEES +L T + D
Sbjct: 124 ESVQGYLSRTSAIVNRMRSYGEKIDNQIVVSKVLRSLTTKFEHVVTAIEESKDLSTYSFD 183
Query: 190 ELQSSLV-HEQRIKSNGEE 207
EL SSL+ HE R+ + E+
Sbjct: 184 ELMSSLLAHEDRLNRSREK 202
>gb|AAG60117.1| copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 125 bits (315), Expect = 1e-27
Identities = 59/190 (31%), Positives = 112/190 (58%)
Query: 18 HYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNLKTKNYLFQA 77
+YD+W++ M+ L + + W+++E + E ++ Q+ +++ + + K ++Q
Sbjct: 17 NYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQG 76
Query: 78 ISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKEGETINTYFS 137
+ D E ++ + K W+ ++T + G+++V + +LQ LR +FE L MKEGE ++ YFS
Sbjct: 77 LDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFS 136
Query: 138 RTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTIDELQSSLVH 197
R LT+ N +K + E + I EK+LRS+ K +++V IEE+ +L+ MTI++L SL
Sbjct: 137 RVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQA 196
Query: 198 EQRIKSNGEE 207
+ K E+
Sbjct: 197 YEEKKKKKED 206
>gb|AAG50765.1| copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321254|gb|AAG50698.1| copia-type polyprotein,
putative [Arabidopsis thaliana] gi|25301687|pir||F96614
probable copia-type polyprotein T18I24.5 [imported] -
Arabidopsis thaliana
Length = 1320
Score = 125 bits (315), Expect = 1e-27
Identities = 59/190 (31%), Positives = 112/190 (58%)
Query: 18 HYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNLKTKNYLFQA 77
+YD+W++ M+ L + + W+++E + E ++ Q+ +++ + + K ++Q
Sbjct: 17 NYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQG 76
Query: 78 ISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKEGETINTYFS 137
+ D E ++ + K W+ ++T + G+++V + +LQ LR +FE L MKEGE ++ YFS
Sbjct: 77 LDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFS 136
Query: 138 RTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTIDELQSSLVH 197
R LT+ N +K + E + I EK+LRS+ K +++V IEE+ +L+ MTI++L SL
Sbjct: 137 RVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQA 196
Query: 198 EQRIKSNGEE 207
+ K E+
Sbjct: 197 YEEKKKKKED 206
>gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25301681|pir||F86246
hypothetical protein [imported] - Arabidopsis thaliana
Length = 1352
Score = 125 bits (315), Expect = 1e-27
Identities = 59/190 (31%), Positives = 112/190 (58%)
Query: 18 HYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNLKTKNYLFQA 77
+YD+W++ M+ L + + W+++E + E ++ Q+ +++ + + K ++Q
Sbjct: 17 NYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQG 76
Query: 78 ISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKEGETINTYFS 137
+ D E ++ + K W+ ++T + G+++V + +LQ LR +FE L MKEGE ++ YFS
Sbjct: 77 LDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFS 136
Query: 138 RTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTIDELQSSLVH 197
R LT+ N +K + E + I EK+LRS+ K +++V IEE+ +L+ MTI++L SL
Sbjct: 137 RVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQA 196
Query: 198 EQRIKSNGEE 207
+ K E+
Sbjct: 197 YEEKKKKKED 206
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
gi|11278364|pir||T47925 copia-type polyprotein -
Arabidopsis thaliana
Length = 1352
Score = 125 bits (315), Expect = 1e-27
Identities = 59/190 (31%), Positives = 112/190 (58%)
Query: 18 HYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNLKTKNYLFQA 77
+YD+W++ M+ L + + W+++E + E ++ Q+ +++ + + K ++Q
Sbjct: 17 NYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQG 76
Query: 78 ISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKEGETINTYFS 137
+ D E ++ + K W+ ++T + G+++V + +LQ LR +FE L MKEGE ++ YFS
Sbjct: 77 LDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFS 136
Query: 138 RTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTIDELQSSLVH 197
R LT+ N +K + E + I EK+LRS+ K +++V IEE+ +L+ MTI++L SL
Sbjct: 137 RVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQA 196
Query: 198 EQRIKSNGEE 207
+ K E+
Sbjct: 197 YEEKKKKKED 206
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis
thaliana] gi|11278363|pir||T49313 copia-type reverse
transcriptase-like protein - Arabidopsis thaliana
Length = 1272
Score = 125 bits (315), Expect = 1e-27
Identities = 59/190 (31%), Positives = 112/190 (58%)
Query: 18 HYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNLKTKNYLFQA 77
+YD+W++ M+ L + + W+++E + E ++ Q+ +++ + + K ++Q
Sbjct: 17 NYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQG 76
Query: 78 ISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKEGETINTYFS 137
+ D E ++ + K W+ ++T + G+++V + +LQ LR +FE L MKEGE ++ YFS
Sbjct: 77 LDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFS 136
Query: 138 RTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTIDELQSSLVH 197
R LT+ N +K + E + I EK+LRS+ K +++V IEE+ +L+ MTI++L SL
Sbjct: 137 RVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQA 196
Query: 198 EQRIKSNGEE 207
+ K E+
Sbjct: 197 YEEKKKKKED 206
>emb|CAA69271.1| lectin receptor kinase [Arabidopsis thaliana]
Length = 544
Score = 125 bits (315), Expect = 1e-27
Identities = 59/190 (31%), Positives = 112/190 (58%)
Query: 18 HYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNLKTKNYLFQA 77
+YD+W++ M+ L + + W+++E + E ++ Q+ +++ + + K ++Q
Sbjct: 33 NYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQG 92
Query: 78 ISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKEGETINTYFS 137
+ D E ++ + K W+ ++T + G+++V + +LQ LR +FE L MKEGE ++ YFS
Sbjct: 93 LDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFS 152
Query: 138 RTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTIDELQSSLVH 197
R LT+ N +K + E + I EK+LRS+ K +++V IEE+ +L+ MTI++L SL
Sbjct: 153 RVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQA 212
Query: 198 EQRIKSNGEE 207
+ K E+
Sbjct: 213 YEEKKKKKED 222
>gb|AAF16534.1| T26F17.17 [Arabidopsis thaliana]
Length = 1291
Score = 124 bits (312), Expect = 3e-27
Identities = 59/190 (31%), Positives = 111/190 (58%)
Query: 18 HYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNLKTKNYLFQA 77
+YD+W++ M+ L + + W+++E + E ++ Q+ +++ + + K ++Q
Sbjct: 17 NYDNWSLQMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQG 76
Query: 78 ISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKEGETINTYFS 137
+ D E ++ + K W+ ++T + G ++V + +LQ LR +FE L MKEGE ++ YFS
Sbjct: 77 LDEDTFEKVVEATSAKEAWEKLRTSYKGVDQVKKVRLQTLRGEFEALQMKEGELVSDYFS 136
Query: 138 RTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTIDELQSSLVH 197
R LT+ N +K + E + I EK+LRS+ K +++V IEE+ +L+ MTI++L SL
Sbjct: 137 RVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQA 196
Query: 198 EQRIKSNGEE 207
+ K E+
Sbjct: 197 YEEKKKKKED 206
>gb|AAP46257.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50919599|ref|XP_470160.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1335
Score = 121 bits (304), Expect = 3e-26
Identities = 68/192 (35%), Positives = 106/192 (54%), Gaps = 7/192 (3%)
Query: 10 SIIPKFDG-HYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNL 68
S++P F G +YD W++ M L S+ WD++EN AG T Q+K + E ++ +
Sbjct: 4 SMVPVFAGENYDIWSIKMRTLLLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSDA 63
Query: 69 KTKNYLFQAISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKE 128
K + Q ++ + I+ K WD +K F GS +V+ +LQ LRR F+ L MKE
Sbjct: 64 KALFLIQQGVAESLFPRIIGAKKSKEAWDKLKEEFQGSQKVLAVKLQTLRRQFQNLLMKE 123
Query: 129 GETINTYFSRTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTI 188
E + YFSR + I N+M+ + E ++ + EKIL S+ K +Y+V + EES +L
Sbjct: 124 SEKVKDYFSRVIEIVNQMRLYGEDINDQKVVEKILISLPEKYEYIVAATEESKDLSK--- 180
Query: 189 DELQSSLVHEQR 200
D L+S HE+R
Sbjct: 181 DSLES---HEER 189
>gb|AAF25964.2| F6N18.1 [Arabidopsis thaliana]
Length = 1207
Score = 110 bits (276), Expect = 4e-23
Identities = 60/111 (54%), Positives = 76/111 (68%), Gaps = 1/111 (0%)
Query: 99 MKTFF*GSNRVIRAQLQALRRDFEILHMKEGETINTYFSRTLTIANKMKAHSEIMSQTII 158
MK + G++RV AQLQ LRR FE+L MK GETI YFSR + I N M+ E M + +
Sbjct: 1 MKRKYQGNDRVQSAQLQRLRRSFEVLEMKIGETITGYFSRVMEITNDMRNLGEDMPDSKV 60
Query: 159 TEKILRSMVSKIDYVVCSIEESNNLDTMTIDELQSSL-VHEQRIKSNGEEE 208
EKILR++V K YVVC+IEESNN+ +T+D LQSSL VHEQ + + EE
Sbjct: 61 VEKILRTLVEKFTYVVCAIEESNNIKELTVDGLQSSLMVHEQNLSRHDVEE 111
>gb|AAF20282.1| gag-pol polyprotein [Vitis vinifera]
Length = 581
Score = 109 bits (273), Expect = 1e-22
Identities = 61/195 (31%), Positives = 106/195 (54%), Gaps = 2/195 (1%)
Query: 18 HYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNLKTKNYLFQA 77
+Y+ WA+ M L++ + W+ +E V G + T AQ KL KE++ K K LF A
Sbjct: 17 NYETWAVRMTVHLQALDVWEAVEENYEVPPLGADPTVAQMKLHKERRTRKAKAKACLFAA 76
Query: 78 ISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKEGETINTYFS 137
+S + I+ D+ IW+ +K + G R+ Q+ L R+FE+ M+E + + Y +
Sbjct: 77 VSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESDAVKDYAA 136
Query: 138 RTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTIDELQSSL-- 195
+ L+IANK++ + S I +KIL ++ K + + S+E S +L T+++ EL SL
Sbjct: 137 QLLSIANKVRLLGKEFSNEKIVQKILVTLPKKYEATISSLENSKDLSTISLTELLHSLEA 196
Query: 196 VHEQRIKSNGEEENG 210
V ++R+ G+ G
Sbjct: 197 VEQRRLMRQGDTAEG 211
>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 107 bits (266), Expect = 6e-22
Identities = 60/206 (29%), Positives = 114/206 (55%), Gaps = 3/206 (1%)
Query: 8 VHSIIPKFDGH-YDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLM 66
+ +IP F+G Y W + M L++++ WD+IEN + + E + A + +Q +
Sbjct: 5 MQQVIPIFNGESYGFWKIKMITILKTRKLWDVIENGV-TSNSSPETSPALTRERDDQVMK 63
Query: 67 NLKTKNYLFQAISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHM 126
++ L A+S + I + W++++ F GS++V LQ LRR++E L M
Sbjct: 64 DMMALQILQSAVSDSIFPRIAPASSATEAWNALEMEFQGSSQVKMINLQTLRREYENLKM 123
Query: 127 KEGETINTYFSRTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTM 186
+EGETIN + ++ + ++N+++ H E S + +KIL S+ + D +V +E++ +L T+
Sbjct: 124 EEGETINDFTTKLINLSNQLRVHGEEKSDYQVVQKILISVPQQFDSIVGVLEQTKDLSTL 183
Query: 187 TIDELQSSL-VHEQRIKSNGEEENGG 211
++ EL +L HE+R+ + N G
Sbjct: 184 SVTELIGTLKAHERRLNLREDRINEG 209
>gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301699|pir||F84531 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1347
Score = 104 bits (259), Expect = 4e-21
Identities = 61/208 (29%), Positives = 110/208 (52%), Gaps = 5/208 (2%)
Query: 9 HSIIPKFDGH-YDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTE--AQRKLIKEQKL 65
H +IP FDG YD W++ M R+++ W ++E + V E+T A+ K ++E+ +
Sbjct: 6 HQVIPIFDGEKYDFWSIKMATIFRTRKLWSVVEEGVPVEPVQAEETPETARAKTLREEAV 65
Query: 66 MNLKTKNYLFQ-AISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEIL 124
N + Q A++ + I + K WD +K + GS +V +LQ+LRR++E L
Sbjct: 66 TNDTMALQILQTAVTDQIFSRIAAASSSKEAWDVLKDEYQGSPQVRLVKLQSLRREYENL 125
Query: 125 HMKEGETINTYFSRTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLD 184
M + + I T+ + + + ++ H E + T + +KIL S+ +K D +V +E++ +LD
Sbjct: 126 KMYDNDNIKTFTDKLIVLEIQLTYHGEKKTNTQLIQKILISLPAKFDSIVSVLEQTRDLD 185
Query: 185 TMTIDELQSSL-VHEQRIKSNGEEENGG 211
+T+ EL L E R+ + E G
Sbjct: 186 ALTMSELLGILKAQEARVTAREESTKEG 213
>ref|NP_915040.1| P0471B04.27 [Oryza sativa (japonica cultivar-group)]
Length = 278
Score = 100 bits (249), Expect = 6e-20
Identities = 65/194 (33%), Positives = 107/194 (54%), Gaps = 17/194 (8%)
Query: 18 HYDHWAMFMENFLRSKEYWDLIENEILVVEAGVEQTEAQRKLIKEQKLMNLKTKNYLFQA 77
+Y WA+ ME + ++ WD IE A E + IK+ K + + LF A
Sbjct: 37 NYSTWAIKMEANMEAQGIWDAIE------PAADEAVD-----IKKDK----QARACLFGA 81
Query: 78 ISHDVLETILNKDTYKNIWDSMKTFF*GSNRVIRAQLQALRRDFEILHMKEGETINTYFS 137
+ DVL+ I K T K +W+S+KT F G RV +A++Q L+ DF+ LHMK+ E+I+ +
Sbjct: 82 VPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFKALHMKDTESIDEFAG 141
Query: 138 RTLTIANKMKAHSEIMSQTIITEKILRSMVSKIDYVVCSIEESNNLDTMTIDELQSSL-V 196
+ +ANK+ M +K+L S+ K +V+ +IE+ ++LD+M DE L
Sbjct: 142 KISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQFSDLDSMPFDEAIGRLKA 201
Query: 197 HEQRIKSNGEEENG 210
+E+RI+ +++NG
Sbjct: 202 YEERIRKR-DDKNG 214
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.334 0.144 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,143,939
Number of Sequences: 2540612
Number of extensions: 17711682
Number of successful extensions: 76440
Number of sequences better than 10.0: 255
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 76146
Number of HSP's gapped (non-prelim): 279
length of query: 330
length of database: 863,360,394
effective HSP length: 128
effective length of query: 202
effective length of database: 538,162,058
effective search space: 108708735716
effective search space used: 108708735716
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 75 (33.5 bits)
Medicago: description of AC121241.10