BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149582.6 + phase: 0
(377 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17027 F - Box like protein 148 5e-36
At1g65770 hypothetical protein 127 8e-30
At2g17036 F - Box like protein 127 1e-29
At1g65760 hypothetical protein 110 2e-24
At1g65740 hypothetical protein 109 3e-24
At3g25750 hypothetical protein 104 7e-23
At2g17690 hypothetical protein 102 3e-22
At4g35740 putative protein 100 2e-21
At1g64840 hypothetical protein 94 2e-19
At1g44080 hypothetical protein 94 2e-19
At5g60060 putative protein 92 6e-19
At2g26160 hypothetical protein 88 9e-18
At2g16290 hypothetical protein 83 2e-16
At5g24040 putative protein 78 9e-15
At1g57906 hypothetical protein 73 2e-13
At2g24245 unknown protein 72 4e-13
At2g16320 pseudogene; similar to MURA transposase of maize Muta... 61 9e-10
At5g55150 putative protein 50 2e-06
At5g54320 putative protein 35 0.052
At5g66830 putative protein 35 0.088
>At2g17027 F - Box like protein
Length = 427
Score = 148 bits (373), Expect = 5e-36
Identities = 120/372 (32%), Positives = 180/372 (48%), Gaps = 46/372 (12%)
Query: 5 VDWSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIPPSHP----NSPSFPLQIPHTI 60
VDWS LPK+L I K L++ D+++FRSVC S+RS+ P P + P P
Sbjct: 2 VDWSTLPKDLLDLISKSLESSFDLIQFRSVCSSWRSAAEPKSPLPTHHLPILPDNGGSLF 61
Query: 61 FDSL--YYLHQSTIYLIEPTNGSSNFNLPPLAPSYTKGWLIKVEESNNNPLK-SLLSPIS 117
DS + L Q +I LI+P P S + GWLIKVEE N P K +LL P+
Sbjct: 62 PDSAVGFRLSQRSILLIKPHE--------PCIESDSFGWLIKVEEDLNVPRKVTLLDPLC 113
Query: 118 DCKLSYPLDSNNSSPIIWNLLNYRVIELCKSYTFQKTLYSPSYVSKVV--FYPNSPRINV 175
D + S P + P + ++ ++V EL + + L+ + V +V Y +
Sbjct: 114 DTRNSIP----ENFPRVLDMSKFKVRELGREF----KLHYFNTVGDIVESLYLEKAVVKY 165
Query: 176 GDC------VACCIFQEGKLGFMKYGDTKWKLVDENNFFYDDVIVFKGLFYVTDRWGTIS 229
DC V I GKL + D W ++++ YDDV++F G F+ D G
Sbjct: 166 LDCDGDYKFVLLTIHVSGKLAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDNNGRTV 225
Query: 230 WIDISSLRLIQFAPPLCGFGNKKHLVESCGNLYVVDRY-----YEGENMRSNNVGRH--- 281
+D SSL+L A P+ G G+KK L+ESCG + +VD Y EG+ + H
Sbjct: 226 VVDYSSLKLTLVASPVFG-GDKKFLIESCGEMLLVDMYLSLEAVEGDPGFVEEIFEHPAF 284
Query: 282 HDQDAVVECFKVHMLDEEWGKWVDVKNLRDRAFVLSRSCNFSVSAKELIGY-QGNCIYFK 340
+ + V+ FKV+ E WVDV +L D+ L FS SA +++ G+ ++
Sbjct: 285 YMNERTVK-FKVYRFVEREESWVDVYDLEDKMLFLGDDSTFSASASDILPLCDGSSVF-- 341
Query: 341 DTFNARMYNLDD 352
FN ++N +D
Sbjct: 342 --FNGNVFNGED 351
>At1g65770 hypothetical protein
Length = 360
Score = 127 bits (320), Expect = 8e-30
Identities = 106/351 (30%), Positives = 166/351 (47%), Gaps = 23/351 (6%)
Query: 6 DWSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIPPSHPNSP--SFPLQIPHTIFDS 63
DWS LP +L + I L ++I++ RFRS+C S+RSS+P + +P + PL + + +
Sbjct: 3 DWSTLPVDLLNMIAGRLFSNIELKRFRSICRSWRSSVPGAGKKNPFRTRPLILLNPNPNK 62
Query: 64 LYYLHQSTIYLIEPTNGSSNFNLPPLAPSYTKGWLIKVEESNNNPLKSLLSPISDCKLSY 123
H+ + S F L+ S ++GWLIK + ++ LL P+S
Sbjct: 63 PLTDHRRRGEFLS----RSAFFRVTLSSSPSQGWLIKSDVDVSSGKLHLLDPLS----RL 114
Query: 124 PLDSNNSSPIIWNLLNYRVIELCKSYTFQ--KTLYSPSYVSKVVFYPNSPRINVGDCVAC 181
P++ + +L + + E+ ++Y +T + K V GD
Sbjct: 115 PMEHSRKRV---DLSEFTITEIREAYQVHDWRTRKETRPIFKRVALVKDKE---GDNQVL 168
Query: 182 CIFQEGKLGFMKYGDTKWKLVDENNFFYDDVIVFKGLFYVTDRWGTISWIDISSLRLIQF 241
I GK M Y D K E + + D+IV KG Y D G + WI S L+ I+F
Sbjct: 169 GIRSTGK---MMYWDIKTWKAKEEGYEFSDIIVHKGQTYALDSIGIVYWIR-SDLKFIRF 224
Query: 242 APPLCGFGNKKHLVESCGNLYVVDRYYEGENMRSNNVGRHHDQDAVVECFKVHMLDEEWG 301
P + + + LVE CG Y+V+R GE+ + A FKV+ D+E G
Sbjct: 225 GPLVGDWTGDRRLVECCGEFYIVERLV-GESTWKRKADDTGYEYAKTVGFKVYKFDDEQG 283
Query: 302 KWVDVKNLRDRAFVLSRSCNFSVSAKELIGYQGNCIYFKDTFNARMYNLDD 352
K ++VK+L D+AFV++ FSV A E G N IYF D +++ LD+
Sbjct: 284 KMMEVKSLGDKAFVIATDTCFSVLAHEFYGCLENAIYFTDDTMIKVFKLDN 334
>At2g17036 F - Box like protein
Length = 404
Score = 127 bits (319), Expect = 1e-29
Identities = 101/349 (28%), Positives = 163/349 (45%), Gaps = 46/349 (13%)
Query: 5 VDWSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIPPSH----PNSPSFPLQIPHTI 60
+DW+ LPK+L I K L++ D+++FRSVC S+RS+ P N P FP +
Sbjct: 2 MDWATLPKDLLDLISKCLESSFDLIQFRSVCSSWRSAAGPKRLLWAHNLPFFPSDDKPFL 61
Query: 61 FDSLYYLHQSTIYLIEPTNGSSNFNLPPLAPSYTKGWLIKVEESNNNPLK-SLLSPISDC 119
+ + + +I LI+P P + GW++KV ++ K +LL P+S
Sbjct: 62 SNVILRVAHQSILLIKPNE--------PQCEADLFGWIVKVWDNIYVSRKMTLLKPLSSS 113
Query: 120 KLSYPLDSNNSSPIIWNLLNYRVIELCKSYTFQKTLYSPSYV-------------SKVVF 166
+ +P P I+++ + V ELC+ + LY P Y VV
Sbjct: 114 RNYFP----QHLPRIFDMSKFTVRELCR----EVKLYHPDYYCVPGHTALELELGKTVVK 165
Query: 167 YPNSPRINVGDCVACCIFQEGKLGFMKYGDTKWKLVDENNFF---YDDVIVFKGLFYVTD 223
Y N + V I + GKL + D +W ++ N++ D+I+F G F+ D
Sbjct: 166 YLNDDKF-----VLLTILEYGKLAVFRSWDREWTVI--NDYIPSRCQDLIMFDGRFFAID 218
Query: 224 RWGTISWIDISSLRLIQFAPPLCGFGNKKHLVESCGNLYVVDRYY--EGENMRSNNVGRH 281
G +D SS +L A PL G G+KK L+ESCG +++VD + + + +
Sbjct: 219 YNGRTVVVDYSSFKLTLAANPLIGGGDKKFLIESCGEMFLVDIEFCLNEKPEFTGGFYSY 278
Query: 282 HDQDAVVECFKVHMLDEEWGKWVDVKNLRDRAFVLSRSCNFSVSAKELI 330
++ V FK L E +WV+V++L D+ F L FS S ++I
Sbjct: 279 FNETTVSYKFKFFKLVEREKRWVEVEDLGDKMFFLGDDSTFSASTADII 327
>At1g65760 hypothetical protein
Length = 362
Score = 110 bits (274), Expect = 2e-24
Identities = 109/373 (29%), Positives = 167/373 (44%), Gaps = 51/373 (13%)
Query: 6 DWSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIPPSHPNSPSFPLQIPHTIFDSL- 64
DWS+LP+EL I L + +++ RFRS+C S+RSS + N+P FP + P FD +
Sbjct: 5 DWSNLPEELLHMIVLLLFSVVELKRFRSICRSWRSSTSGVNRNNP-FPSR-PRIHFDPID 62
Query: 65 --YYLHQSTIYLIEPTNGSSN--FNLPPLAPSYTKGWLIKVEESNNNPLKSLLSPISDCK 120
L Y+ P S F L+ S +KGW+IK + N+ LL+ +S
Sbjct: 63 PSETLSSDDSYISRPGAFLSRAAFFRVTLSSSSSKGWMIKSDMDINSGRFRLLNVLS--- 119
Query: 121 LSYPLDSNNSSPIIWNLLNYRVIELCKSYTFQKTLYSPSYVSKVVFYPNSPRINVGDCVA 180
YPL + S +LL + V E+ ++YT T S Y S + V +
Sbjct: 120 -RYPLRLYSESI---DLLEFTVSEIREAYTVLNTAKRRSATKG---YQRSAPVKVKEGEG 172
Query: 181 CCIFQEGKLGFMKYGDTKW------KLVDENNFFYDDVIVFKGLFYVTDRWGTISWIDIS 234
++G LG + G+ + + + + D+IV KGL S
Sbjct: 173 ---HRDGVLGIGRDGNINYWDGNVLSELKQMGDHFSDIIVHKGLIN-------------S 216
Query: 235 SLRLIQFAPPLC-----GFGNKKHLVESCGNLYVVDRYYEGENMRSNNVGRHHDQDAVVE 289
L + +F L G VE CG LY+V+R +N R G V
Sbjct: 217 DLEISRFGTSLDENITDGCWGDLRFVEGCGELYIVERL--PKNTRKRKAGDFFHNSRTVG 274
Query: 290 CFKVHMLDEEWGKWVDVKNLRDRAFVLSRSCNFSVSAKELIGYQGNCIYFKDTFNARMYN 349
FK + +DEE KW+++K L D AF++ FSV A E+ G N IY+ + ++
Sbjct: 275 -FKAYKMDEELAKWIEIKTLGDNAFLMGTDTCFSVLAHEVYGCLPNSIYYTENTWPKVCK 333
Query: 350 LDD----NIIITI 358
L+D +II+T+
Sbjct: 334 LEDGNGSSIIVTM 346
>At1g65740 hypothetical protein
Length = 371
Score = 109 bits (272), Expect = 3e-24
Identities = 106/370 (28%), Positives = 168/370 (44%), Gaps = 47/370 (12%)
Query: 5 VDWSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIP-----PSH--PNSPSFPLQIP 57
VDWS LP+EL I + ++ RF S+C S+ SS+ P H P P+
Sbjct: 2 VDWSTLPEELLHFIAARSFSLVEYKRFSSICVSWHSSVSGVKKNPFHRRPLIDFNPIAPS 61
Query: 58 HTIFDSLYYLHQSTIYLIEPTNGSSNFNLPPLAPSYTKGWLIKVEESNNNPLKSLLSPIS 117
T+ + + +L + F L+ S +KGW+IK + N+ LL+P+S
Sbjct: 62 ETLLEDHVFSCNPGAFL-----SRAAFFRVTLSSSPSKGWIIKSDMDTNSGRFHLLNPLS 116
Query: 118 DCKLSYPLDSNNSSPIIWNLLNYRVIELCKSYTFQKT----LYSPSYVSKVVFYPNSPRI 173
+PL ++ S +LL++ V E+ +SY K L +P Y + ++
Sbjct: 117 ----RFPLRISSES---LDLLDFTVSEIQESYAVLKDAKGRLPNPGYQRSALV-----KV 164
Query: 174 NVGDCVACCIFQEGKLGFMKYGDTKWKLVDENNF-----FYDDVIVFKGLFYVTDRWGTI 228
GD I G+ G + Y W N F + D+IV KG+ YV D G +
Sbjct: 165 KEGDDHHHGILGIGRDGTINY----WNGNVLNGFKQMGHHFSDIIVHKGVTYVLDSKGIV 220
Query: 229 SWIDISSLRLIQFAPPL---CGFGNKKH---LVESCGNLYVVDRYYEGENMRSNNVGRHH 282
W S L + ++ L G +++ V+ CG LYV+ R + + + +
Sbjct: 221 -WCINSDLEMSRYETSLDENMTNGCRRYYMRFVDCCGELYVIKRLPKENSRKRKSTLFQF 279
Query: 283 DQDAVVECFKVHMLDEEWGKWVDVKNLRDRAFVLSRSCNFSVSAKELIGYQGNCIYFKDT 342
+ A FKV+ +D+E KWV+VK L D AFV++ FSV A E G N IYF +
Sbjct: 280 SRTAG---FKVYKIDKELAKWVEVKTLGDNAFVMATDTCFSVLAHEYYGCLPNSIYFIED 336
Query: 343 FNARMYNLDD 352
+++ LD+
Sbjct: 337 LEPKVFQLDN 346
>At3g25750 hypothetical protein
Length = 348
Score = 104 bits (260), Expect = 7e-23
Identities = 100/366 (27%), Positives = 159/366 (43%), Gaps = 54/366 (14%)
Query: 3 EKVDWSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIPPSHPNSP-SFPLQIPHTIF 61
EK +WS LP+EL I ++ID+LR RS C+S+RS++ S F +P +
Sbjct: 2 EKTEWSDLPEELLDLIANRYSSNIDVLRIRSTCKSWRSAVAMSKERLQFRFERYLPTSNK 61
Query: 62 DSLYYLHQSTIYLIEPTNGSSNFNLPPLAPSYTKGWLIKVEESNNNPLK-SLLSPISDCK 120
+L +T + I LP P+ KGWL++ +++ K +LL P+S +
Sbjct: 62 KIKAHLSPTTFFRI---------TLPSSCPN--KGWLVRTRQASKMYRKITLLCPLSGER 110
Query: 121 LSYPLDSNNSSPIIWNLLNYRVIELCKSYTFQKTLYSPSYVSKVVFYPNSPRINVGDCVA 180
++ S +LL V E+ +SY Q ++ K+ D
Sbjct: 111 IT-------RSHQTLDLLKVGVSEIRQSYEIQ--IFDGLKDEKIPL----------DSEI 151
Query: 181 CCIFQEGKLGFMKYGDTKWKLVDENNFFYDDVIVFKGLFYVTDRWGTISWIDISSLRLIQ 240
+ + G W + + D+I+ G Y D G I WI +S L ++Q
Sbjct: 152 FSNYIKNSDKIPSEGSRSWTKIKNQVEDFSDIILHMGRIYAVDLKGAIWWISLSQLTIVQ 211
Query: 241 --FAPPLCGFG----NKKHLVESCGNLYVVDRYYEGENMRSNNVGRHHDQDAVVECFKVH 294
+ PL + LVE CG+L +V ++ R+H Q V FKV+
Sbjct: 212 QTSSTPLDYYKYDSCQDTRLVEYCGDLCIVHEL---------SITRNHIQRTVG--FKVY 260
Query: 295 MLDEEWGKWVDVKNLRDRAFVLSRSCNFSVSAKELIGYQGNCIYF-----KDTFNARMYN 349
+DE+ KWV+V L D +++ + F+V A E G N IYF K N +++
Sbjct: 261 KMDEDLAKWVEVSCLGDNTLIVACNSCFTVVASEYHGCLKNSIYFSYYDVKKAENIKVFK 320
Query: 350 LDDNII 355
LDD I
Sbjct: 321 LDDGSI 326
>At2g17690 hypothetical protein
Length = 421
Score = 102 bits (254), Expect = 3e-22
Identities = 117/427 (27%), Positives = 171/427 (39%), Gaps = 98/427 (22%)
Query: 6 DWSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIPPSHPNSPSFPLQIPHTIFDSLY 65
DWS LP+EL I L + I+++RFRS+C+S+RSS + N H++ L
Sbjct: 3 DWSKLPEELLGLIALRLYSVIELIRFRSICKSWRSSASGVNKN---------HSLSSPLI 53
Query: 66 YLHQSTIYLIE-PTNGS------------SNFNLPPLAPSYTKGWLIKVEESNNNPLKSL 112
Y I L NG + F LA S +GWLIK + L
Sbjct: 54 YFKPLQIILARAQANGQILSKYHGTVLSRATFFRVTLASSPDQGWLIKSDTDLKYRNFHL 113
Query: 113 LSPISDCKLSYPLDSNNSSPIIWNLLNYRVIELCKSYTF--QKTLYSPSYVSKVVFYPNS 170
L+ +S L S + +L + V E+ +SY ++T + S +V
Sbjct: 114 LNCLSRKAL-------GRSRKLISLSEFIVSEIQESYAVVGRRTRETASEFKRVFLV--- 163
Query: 171 PRINVGDCVACCIFQEGKLGFMKYGDTKWKLVDENNFFYDDVIVFKGLFYVTDRWGTISW 230
R+ GD I +GK+ F K G W + + + D ++ +GL Y D G + W
Sbjct: 164 -RVQGGDHRVLVIGIDGKIRFWKGG--IWNGIKKQVAQFSDFVLDEGLTYAVDTKGIMWW 220
Query: 231 IDISSLRLIQFAPPL-----CGFGNKKHLVESCGNLYVVDRYYEGENMRSNNVGRH---- 281
I S+ +I++ L G +K V G LY+VDR + EN+ +
Sbjct: 221 IS-SAYDIIRYGTKLHENITNGSCGEKRFVRCRGELYIVDRLID-ENLLKRKADSYDDNA 278
Query: 282 ------------------------------------HDQDAVVEC------------FKV 293
HD V C FKV
Sbjct: 279 IVHFRNADYTNADLWEDGNGNDDFFAAQAHRFIHVLHDNLGNVSCKPFERDPPKTIGFKV 338
Query: 294 HMLDEEWGKWVDVKNLRDRAFVLSRSCNFSVSAKELIGYQGNCIYFKD--TFNARMYNLD 351
+ DEE KWV+VK+L D+A V++ FSVSA E G N IYF D +++ LD
Sbjct: 339 YKNDEELLKWVEVKSLGDKAIVIATDACFSVSAHEFYGCLPNSIYFTDKKEEEVKVFKLD 398
Query: 352 DNIIITI 358
D I T+
Sbjct: 399 DGSITTM 405
>At4g35740 putative protein
Length = 926
Score = 100 bits (248), Expect = 2e-21
Identities = 89/316 (28%), Positives = 142/316 (44%), Gaps = 46/316 (14%)
Query: 1 MDEKVDWSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIPPSHPNSPSFPLQIPHTI 60
M E WS LP EL I L + +++LRFRS+C++FRS++
Sbjct: 1 MSEATVWSDLPGELLDHIANGLFSKVELLRFRSICKTFRSAVDSDK-------------- 46
Query: 61 FDSLYYLHQSTIYLIEPTNGSSNFNLPPLAPSYTKGWLIKVEESNNNPLKSLLSPISDCK 120
+ L +L ++ L+ P S+ F L+ KGWLIK++++ + K LLSP+S
Sbjct: 47 -NFLDHLKRNRRRLLSPY--STAFYRVVLSSYPDKGWLIKLQDAYVSSQKQLLSPLSRFS 103
Query: 121 LSYPLDSNNSSPIIWNLLNYRVIELCKSYTFQKTLYSPSYVSKVVFYPNSPRINVGDCVA 180
+ SS +LL + V E+ +SY + Y+ + S N R+ + +
Sbjct: 104 I-------KSSGKTLDLLEFTVSEIHQSYDVEYLYYNSTRASF-----NFARVVLAEDFV 151
Query: 181 CCIFQEGKLGF--MKYGDTKW-KLVDENNFFYDDVIVFKGLFYVTDRWGTISWIDISSLR 237
+ K+ D+ W +++DE + D++ KG Y D G + WI +S
Sbjct: 152 FIVDNYKKIWLCNSNESDSHWVRIMDEEVKLFSDIVFHKGYMYALDLTGAVWWISLSEFG 211
Query: 238 LIQFAP-----PLCGFG--NKKHLVESCGNLYVVDRYYEGENMRSNNVGRHHDQDAVVEC 290
+ QF P C K VE CG+L +V R+ R V D D V
Sbjct: 212 IFQFGPSSTPMDYCDIDECKDKRFVEYCGDLCIVHRF--SRKFRIKRV----DIDMTVG- 264
Query: 291 FKVHMLDEEWGKWVDV 306
FKV+ +DEE ++V+V
Sbjct: 265 FKVYKMDEELVEYVEV 280
>At1g64840 hypothetical protein
Length = 384
Score = 93.6 bits (231), Expect = 2e-19
Identities = 96/347 (27%), Positives = 153/347 (43%), Gaps = 38/347 (10%)
Query: 6 DWSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIP-PSHPNSPSFPL----QIPHTI 60
+WS LP+EL + I K LDN D++ RS+C S+RS+ P PS ++ S+ L + P +
Sbjct: 4 NWSQLPEELLNLISKNLDNCFDVVHARSICRSWRSAFPFPSSLSTLSYSLPTFAKFP-LV 62
Query: 61 FDSLYYLHQSTIYLIEPTNGSSNFNLPPLAPSYTKGWLIKVEESNNNPLKSLLSPIS-DC 119
L L + I+L N +++ P Y G +++ +N L SP+
Sbjct: 63 SKDLCTLKKIQIFLFRARNPAADI------PEYFLG---GIDQDQSNDHMELPSPLQCSV 113
Query: 120 KLSYPLDSNNSSPIIWNLLNYRVIELCKSYT---FQKTLYSPSYVSKVVFYPNSPRINVG 176
K+ +P S P + N+L+Y++I L Y + + YV V F P + N G
Sbjct: 114 KVKFP----QSDPFLVNMLDYQIIPLGFQYIMIGWDPESLANGYVG-VAFLP--VKKNGG 166
Query: 177 DCVACCIFQEGKLGFMKYGDTKWKLVDENNF-FYDDVIVFKGLFYVTDRWGTISWIDISS 235
D + L ++ + +W V + + ++ F+G FYVT G I D S
Sbjct: 167 DEFVVLLRYRNHLLVLRSSEMRWMKVKKTSIASCKGLVSFRGRFYVTFLNGDIYVFDPYS 226
Query: 236 LRLIQFAPPLCGFGNKKHLVESCGNLYVVDRYYEGENMRSNNVGRHHDQDAVVECFKVHM 295
L P +K + L++V+++ ++ R +V
Sbjct: 227 LEQTLLMPSEPLRSSKYLIPNGSDELFLVEKFNPFPEADVLDLSRF--------ACRVSR 278
Query: 296 LDEEWGKWVDVKNLRDRAFVLSRSCNFSVSAKEL---IGYQGNCIYF 339
LDEE G+WV+V +L DR + N SAKEL G GN I F
Sbjct: 279 LDEEAGQWVEVIDLGDRVLFIGHFGNVCCSAKELPDGCGVSGNSILF 325
>At1g44080 hypothetical protein
Length = 311
Score = 93.6 bits (231), Expect = 2e-19
Identities = 92/361 (25%), Positives = 153/361 (41%), Gaps = 82/361 (22%)
Query: 4 KVDWSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIPPSHPNSPSFPLQIPHTIFDS 63
KV WS L ++L + L ++I++LRFRS+C+ +RS
Sbjct: 3 KVGWSDLHEDLIDLLANNLSSNINLLRFRSICKPWRS----------------------- 39
Query: 64 LYYLHQSTIYLIEPTNGSSNFNLPPLAPSYTKGWLIKVEESNNNPLKSLLSPISDCKLSY 123
T+ + + NLP K+++SP + +++
Sbjct: 40 -------TVATKKRLHNHFERNLPTFKKK-----------------KTVVSPSTFFRVTL 75
Query: 124 PLDSNNSSPIIWNLLNYRVIELCKSYTFQKTLYSPSYVSKVVFYPNSPRI-NVGDCVACC 182
P N W + N +V E ++++ S +VVF N + + + + CC
Sbjct: 76 PSPCRNKG---WLIKNRQVSE---------SIFADS--DRVVFLDNVFFVVDFKNEIWCC 121
Query: 183 IFQEGKLGFMKYGDTKWKLVDENNFFYDDVIVFKGLFYVTDRWGTISWIDISSLRLIQFA 242
E + + + + K + D+I+ KG Y D G I WI +S L + Q+
Sbjct: 122 KSGEETRHWTRINNEEAK-------GFLDIILHKGKIYALDLTGAIWWISLSELSIYQYG 174
Query: 243 P--PLCGFG----NKKHLVESCGNLYVVDRYYEGENMRSNNVGRHHDQDAVVECFKVHML 296
P P+ + +K LVE CG L VV R+Y+ ++ R CFKV+ +
Sbjct: 175 PSTPVDFYEIDNCKEKRLVEYCGELCVVHRFYKKFCVKRVLTER-------TVCFKVYKM 227
Query: 297 DEEWGKWVDVKNLRDRAFVLSRSCNFSVSAKELIGYQGNCIYFKDTFNARMYNLDDNIII 356
D+ +WV+V +L D+A +++ F V A E G N IYF D + ++ LDD II
Sbjct: 228 DKNLVEWVEVSSLGDKALIVATDNCFLVLASEYYGCLENAIYFNDREDVSVFKLDDCSII 287
Query: 357 T 357
T
Sbjct: 288 T 288
>At5g60060 putative protein
Length = 374
Score = 91.7 bits (226), Expect = 6e-19
Identities = 104/364 (28%), Positives = 173/364 (46%), Gaps = 60/364 (16%)
Query: 7 WSHLPKELWSKIGKYLDNH----IDILRFRSVCESFRSSIPPSHPNS--PSFPLQIPHTI 60
WS LP ++ I LD+ I +L RSVC ++R S+P S+ N+ FP +P
Sbjct: 11 WSDLPLDILELISDRLDHDSSDTIHLLCLRSVCATWRLSLPLSNKNNRLSKFPKYLPFWS 70
Query: 61 FDS----LYYLHQSTIYLIEPTNGSSNFNLPPLAPSYTKGWLIKVEESNNNPLKSLLSPI 116
S + L QS +Y +E AP + L+K++E+ ++ +L
Sbjct: 71 SSSSSSGFFTLKQSNVYKLE-------------APLNPRTCLVKLQETTPGIMR-VLDLF 116
Query: 117 SDCKLSYPLDSNNSSPIIWNLLNYRVIELCKSYTFQKT--------LYSPSYVSKVVFYP 168
S+ ++ + L N S I +L + V + ++Y + + + KVV
Sbjct: 117 SNDRICF-LPENFPSKI--DLQEFHVRLVRRTYRMEYANNGGGAVPCFWSLHSDKVVILS 173
Query: 169 NSPRINVGDCVACCIFQEGKLGFMKYG-DTKWKLVDEN-NFFYDDVIVFKG--LFYVTDR 224
+ D I GKLGF+K G D KWK++D + N Y+D++++K V D+
Sbjct: 174 SGE-----DSAIIAIHSGGKLGFLKSGNDEKWKILDNSWNVIYEDIMLYKDNRCIVVDDK 228
Query: 225 WGTISWIDISSLRLIQFAPPLCGFG-NKKHLVE-SCGNLYVVDRYYEGENMRSNNVGRHH 282
T+ + D+ ++ A L G G +KKHLVE S G +++VD+Y + +S+
Sbjct: 229 GKTVIY-DVD-FKVSDLAEGLVGGGGHKKHLVECSGGEVFLVDKYVKTVWCKSDI----- 281
Query: 283 DQDAVVECFKVHMLDEEWGKWVDVKNLRDRAFVLSRSCNFSVS--AKELIGYQGNCIYFK 340
+VVE F+V+ L E +W +V++L D A + C+FSV A +L G I++
Sbjct: 282 -SKSVVE-FRVYNLKREEKRWEEVRDLGDVALFIGDDCSFSVQNPAGDL---AGGFIFYS 336
Query: 341 DTFN 344
D N
Sbjct: 337 DYRN 340
>At2g26160 hypothetical protein
Length = 359
Score = 87.8 bits (216), Expect = 9e-18
Identities = 98/358 (27%), Positives = 150/358 (41%), Gaps = 64/358 (17%)
Query: 3 EKVDWSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIPPSHPNSPSFPLQIPHTIFD 62
EK +WS LP +L + + D+LR RS+C+ +RS+ SF +P +
Sbjct: 2 EKPEWSELPGDLINLTANRFSSISDVLRVRSICKPWRSAAA----TPKSFQCNLPSSNKM 57
Query: 63 SLYYLHQSTIYLIEPTNGSSNFNLPPLAPSYTKGWLIKVEESNNNPLKSLLSPISDCKLS 122
L +T + + P + SY KGWLI+ ++ + + +LLSP L+
Sbjct: 58 IETVLSPTTFFRVTG----------PSSCSY-KGWLIRTKQVSESSKINLLSPFFRQLLT 106
Query: 123 YPLDSNNSSPIIWNLLNYRVIELCKSYT---FQKTLYS-------PSYV-SKVVFYPNSP 171
S +LL + V E+ +SY F K L PS++ S+VVF N
Sbjct: 107 -------PSQQTLDLLKFEVSEIRQSYEIHIFDKYLIQGVIGKEGPSHILSRVVFLDN-- 157
Query: 172 RINVGDCVACCIFQEGKLGFMKYGDTK---WKLVDENNFFYDDVIVFKGLFYVTDRWGTI 228
+ + Q+ K+ K G+ W + + D+I+ KG Y D G I
Sbjct: 158 -------LIFAVGQDDKIWCCKSGEESSRIWTKIKNQVEDFLDIILHKGQVYALDLTGAI 210
Query: 229 SWIDISSLRLIQFAPPL----CGFGN-KKHLVESCGNLYVVDRYYEGENMRSNNVGRHHD 283
WI +S L L+QF P + G+ + K LVE CG+L ++ +R
Sbjct: 211 WWISLSPLSLLQFTPSIPMDYDGYDSCNKRLVEYCGDLCII------HQLRLKKAYIRRS 264
Query: 284 QDAVVECFKVHMLDEEWGKWVDVKNLRDRAFVLSRSCNFSVSAKELIGYQGNCIYFKD 341
Q V FKV+ +DE KWV+ D+ + E G N IYF D
Sbjct: 265 QRTV--GFKVYKMDEYVAKWVESGAEADQFI------KHDDESSEYHGLLKNYIYFDD 314
>At2g16290 hypothetical protein
Length = 415
Score = 83.2 bits (204), Expect = 2e-16
Identities = 102/388 (26%), Positives = 165/388 (42%), Gaps = 51/388 (13%)
Query: 6 DWSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIPPSHPNSPSFPLQIPHTIFDSLY 65
DWS LP +L I +L+ +I+ FRSVC S+RS +PP +S ++ F++ +
Sbjct: 3 DWSLLPNDLLELIVGHLETSFEIVLFRSVCRSWRSVVPPLD-HSRCLGIKTHDISFNAGF 61
Query: 66 -YLHQSTIYLIEPTNGSSNFNLPPLAPSYTKGW--------LIKVEESNNNPLKSLLSPI 116
+ Q T P S + L + K W + ++ E K LLSP+
Sbjct: 62 TFSDQPTDQ--PPFKSSVDCTLKNIPIYLVKFWTPYGDDYLIAEMREREGGEPKLLLSPL 119
Query: 117 SDCKLSYPLDSNNSSPIIWNLLNYRVIELCKSYT---FQKTLYSPSYV------SKVVFY 167
S ++ Y + N +++N L +I + Y F+K Y ++V +
Sbjct: 120 SSNRIIYGMGINK---VLFNSLTSPIIPFGQYYEITYFKKQPIRYRYGLPYHLWNEVEWV 176
Query: 168 PNSPRINV-----GDCVACCIFQEGK---LGFMKYGDTKWKLVDEN--NFFYDDVIVFKG 217
S R+ D + G+ L + + W V E+ + Y D++ FKG
Sbjct: 177 ETSERVEFLRLHSEDSRDFAVLFAGRMCNLVMYRSRNMSWTQVVEHPETYAYQDLVAFKG 236
Query: 218 LFYVTDRWGTISWIDIS-SLRLIQFAPPLCG--FGNKKHLVESCGNLYVVDRYYEGENMR 274
FY D G + SLR+ + P + G + +K+ LV+ L +V R+
Sbjct: 237 KFYALDSSGRGRVFVVELSLRVTEI-PSVKGSQYCSKESLVQLGEELLLVQRFIPA---- 291
Query: 275 SNNVGRHHDQDAVVECFKVHMLDEEWGK--WVDVKNLRDRAFVLSRSCNFSVSAKELIGY 332
GR +D+ + FKV LDEE GK WV V L DR L S +L G
Sbjct: 292 ----GRRYDE-YIYTWFKVFRLDEEGGKRKWVQVNYLNDRVIFLGARTKLCCSVHKLPGA 346
Query: 333 QGNCIYFKDTFNARMYNLDDNIIITIDL 360
NCI F + + ++ D++ ++ DL
Sbjct: 347 NENCIVFLASNDGSIF--DNDSVLLFDL 372
>At5g24040 putative protein
Length = 373
Score = 77.8 bits (190), Expect = 9e-15
Identities = 96/390 (24%), Positives = 158/390 (39%), Gaps = 89/390 (22%)
Query: 5 VDWSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSS--IPPSHPNSPSFPLQI-PHTIF 61
V WS LP E+ I +DN D++ FRSVC +RSS + H S PL + P
Sbjct: 2 VKWSELPPEILHLISLKIDNPFDLIHFRSVCSFWRSSSLLKFRHMTSLRCPLPLDPGGCG 61
Query: 62 DSLYYLHQSTIYLIEPTNGSSNFNLPPLAPSYTKGWLIKVEESNNNP--LKSLLSPISDC 119
D + L S +YL++ N P Y W+ K++ N L SL +
Sbjct: 62 DDCHIL-SSRVYLLKCPNRDR--------PQY---WMFKLQAKENGEVVLHSLFLRRNSS 109
Query: 120 KLS--YPLDSNNSSPIIWNLLNYRVIELCKSYTFQKTLYSPSYVSKVVFYPNSPRINVGD 177
YP + +LLN ++ EL + + YS + + +
Sbjct: 110 AYGCLYP-------SLSIDLLNCQIFELAQEHV---ACYSEWF-------------ELFE 146
Query: 178 CVACCIFQEGKLGFMKYG-----------------------DTKW-KLVDENNFFYDDVI 213
C++ C E ++GFM D +W +L + F++ ++
Sbjct: 147 CISKC---EERIGFMGLNREKNEYMILGKLSFNGLAMYRSVDNRWTELEITPDSFFEGIV 203
Query: 214 VFKGLFYVTDRWGTISWIDIS-SLRLIQFAPPLCGFGNKKHLVESCGNLYVVD-----RY 267
FKG FY DR G + +D + + Q + P C K+ L+ + L +V+ RY
Sbjct: 204 PFKGKFYAIDRTGKTTVVDPTLEVNTFQRSRP-CDKTRKRWLLMTGDKLILVEMCTKSRY 262
Query: 268 -YEGENMRSNNVGRHHDQDAVVECFKVHMLDEEWGKWVDVKNLRDRAFVLSRSCNFSVSA 326
+ N+R + F++ L+EE W V+++ R L C FS A
Sbjct: 263 DFHIPNIREKKIW-----------FEISELNEERNDWDQVEDMDGRVLFLEHYCTFSCLA 311
Query: 327 KELIGYQGNCIYFKDTF-NARMYNLDDNII 355
E+ G++ N I F D + + Y L+ ++
Sbjct: 312 TEIPGFRANSIIFMDLWGGSNSYELESILV 341
>At1g57906 hypothetical protein
Length = 228
Score = 73.2 bits (178), Expect = 2e-13
Identities = 57/176 (32%), Positives = 78/176 (43%), Gaps = 40/176 (22%)
Query: 186 EGKLGFMKYGDTKWKLVDENNFFYDDVIVFKGLFYVTDRWGTISWIDISSLRLIQFAPPL 245
+GK+ F + W + + + D+IV K L YV D G + WI I +++ L
Sbjct: 58 DGKIRF--WNGEIWTRIKDQIGEFSDIIVLKELIYVLDTKGIVWWISI-----VRYGTSL 110
Query: 246 CG-FGNKKHLVESCGNLYVVDRY-------------------YEGENMRSNNVGRHH--- 282
G LV CG LY+VDR Y G R +NV
Sbjct: 111 TNECGGDLSLVACCGELYIVDRLFKENVLKRKADYLDLDDNVYVGVAPRISNVIHDDFGN 170
Query: 283 -----DQDAVVEC-----FKVHMLDEEWGKWVDVKNLRDRAFVLSRSCNFSVSAKE 328
DQ+ +EC F V+ +DEE GKWV+VK+LRD A V++ FSV A E
Sbjct: 171 EKCNVDQEVEIECPKMVGFNVYKVDEELGKWVEVKSLRDSAVVMATDTCFSVMAHE 226
>At2g24245 unknown protein
Length = 374
Score = 72.4 bits (176), Expect = 4e-13
Identities = 97/350 (27%), Positives = 150/350 (42%), Gaps = 59/350 (16%)
Query: 6 DWSHLPKELWSKIGKYLDNH-IDILRFRSVCESFRSSIPPSHPNS--------PSFPLQI 56
DWS LP+EL I +L++H D + RSVC S+RS+ P P+S P+FPL+
Sbjct: 15 DWSQLPEELLHIISTHLEDHYFDAVHARSVCRSWRSTFP--FPSSLLRQSYSLPAFPLES 72
Query: 57 PHTIFDSLYYLHQSTIYLIEPTNGSSNFNLPPLAPSYTKGWLIKVEESNNNPLKSLLSPI 116
D L + ++L P A + ++ +L + + +N L SP+
Sbjct: 73 K----DLCCTLEKVPLFLFRVLTP------PDAADASSEYFLGGLGQDKSNDHVELPSPL 122
Query: 117 SDCKLSYPLDSNNSSPIIWNLLNYRVIELCKSYTFQKTLYSPSYVSKVVFYPNSPRINVG 176
+ S ++ + PI+ N+L+ ++I L Y Y F P + + G
Sbjct: 123 ---QCSVKVNVPGTEPILMNMLDCQIIPLGHKYRLMIGCNPEEY--SAAFLPLNEQGGGG 177
Query: 177 DCVACCIFQEGKLGFMKYGDTKW-KLVDENNFFYDDVIVFKGLFYVTDRWGTISWIDISS 235
+ VA + L ++ + +W +L + ++ F+G FY T G ID SS
Sbjct: 178 EFVALLDCTDLFL-VLRSTEMRWIRLEKPSTASCKELFTFRGRFYATFFNGDTFVIDPSS 236
Query: 236 LRLIQFAPPLCGFGNKKHLVESCGN--LYVVDRYYEGENMRSNNVGRHHDQDAVVECFKV 293
L A PL + LV S GN L++V + + C +V
Sbjct: 237 LE----ATPLTPHIDSNFLVPS-GNEELFLVKTDF-------------------LRC-RV 271
Query: 294 HMLDEEWGKWVDVKNLRDRAFVLSRSC-NFSVSAKEL---IGYQGNCIYF 339
LDEE +WV+V +L DR L NF SAKEL G G+ I F
Sbjct: 272 SRLDEEAAEWVEVSDLGDRVLFLGGHLGNFYCSAKELPHGCGLTGDSILF 321
>At2g16320 pseudogene; similar to MURA transposase of maize Mutator
transposon
Length = 467
Score = 61.2 bits (147), Expect = 9e-10
Identities = 90/389 (23%), Positives = 153/389 (39%), Gaps = 73/389 (18%)
Query: 6 DWSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIPPSHPNSPSFPLQIPHTIFDSLY 65
DWS LP +L I +L+ +I+ FRSVC S+RS +PP S ++ F++ +
Sbjct: 3 DWSLLPNDLLELIVGHLETSFEIVLFRSVCSSWRSVVPP-QDQSRCLSIKTHDISFNAGF 61
Query: 66 -YLHQSTIYLIEPTNGSSNFNLP--------PLAPSYTKGWLIKVEESNNNPLKSLLSPI 116
+ Q T + P GS+ +P P Y L ++ E LLSP+
Sbjct: 62 SFSGQPTDH---PLFGSTLTKIPIYLVKFWTPFGDDYL---LAEMREREGGEPMFLLSPL 115
Query: 117 SDCKLSYPLDSNNSSPIIWNLLNYRVIELCKSYTFQKTLYSP------------------ 158
S ++ Y + N +++N L +I + Y + P
Sbjct: 116 SSNRIIYGMGINK---VLFNSLTSPIIPFGQYYEITYSEKQPIRYRYGLPCHLWDKLEWV 172
Query: 159 SYVSKVVFYPNSPRINVGDCVACCIFQEGK---LGFMKYGDTKWKLVDEN--NFFYDDVI 213
+V F +++ D + G+ L + + W V E+ + Y D++
Sbjct: 173 EITERVEFL----KLDSEDSRDFAVLFAGRMCNLVMYRSRNMSWTQVVEHPEKYAYQDLV 228
Query: 214 VFKGLFYVTDRWGTISWIDISSLRLIQFAPPLCGF--GNKKHLVESCGNLYVVDRYYEGE 271
FKG FY D G + + P + G +K++LV S L +V R+
Sbjct: 229 AFKGKFYALDSSGRGRVFVVELSLEVMEIPSVRGSQQSSKENLVLSGEELLLVQRF---- 284
Query: 272 NMRSNNVGRHHDQDAVVECFKVHMLDEEWGKWVDVKNLRDRAFVLSRSCNFSVSAKELIG 331
RH+D + + F+V LDEE G+ N S +L
Sbjct: 285 ----TPEVRHYD-EYLYTWFRVFRLDEEEGR--------------ETQTNLCCSVHKLPC 325
Query: 332 YQGNCIYFKDTFNARMYNLDDNIIITIDL 360
+ NCI F ++ N + +D++ ++ DL
Sbjct: 326 AKENCIVFIESNNC--FIIDNDSVLLFDL 352
Score = 34.3 bits (77), Expect = 0.11
Identities = 19/49 (38%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Query: 7 WSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIPPSHPNSPSFPLQ 55
WS L +L I + + +I+ RSVC S+RS +PP N P F Q
Sbjct: 402 WSLLLNDLLKLIVGHFETSFEIVNLRSVCSSWRSVVPPL-DNFPLFRYQ 449
>At5g55150 putative protein
Length = 340
Score = 50.1 bits (118), Expect = 2e-06
Identities = 41/155 (26%), Positives = 73/155 (46%), Gaps = 7/155 (4%)
Query: 188 KLGFMKYGDTKWKLVDENNFFYDDVIVFKGLFYVTDRWGTISWIDISSLRLIQFAPPLCG 247
KL F + GD +W ++ DD++ G+F+ DR G I ++S+ A PLC
Sbjct: 145 KLAFCRRGDKQWTDLESVASSVDDIVFCNGVFFAIDRLGEIYHCELSANN--PKATPLCS 202
Query: 248 FGNKKHLVESCGNLYVVDRYYEGENMRSNNVGRHHDQDAVVECFKVHMLDEEWGKWVDVK 307
++ +SC Y+ + Y+ + + + D D F+++ + E +W V
Sbjct: 203 TSPFRY--DSC-KKYLAESDYDELWVVLKKLELNDDCDFETS-FEIYEFNRETNEWTKVM 258
Query: 308 NLRDRAFVLS-RSCNFSVSAKELIGYQGNCIYFKD 341
+LR +A LS + +V A E ++ N +YF D
Sbjct: 259 SLRGKALFLSPQGRCIAVLAGERGFFKDNSVYFID 293
>At5g54320 putative protein
Length = 369
Score = 35.4 bits (80), Expect = 0.052
Identities = 31/107 (28%), Positives = 49/107 (44%), Gaps = 7/107 (6%)
Query: 252 KHLVES-CGNLYVVDRYYEGENMRSNNVGRHHDQDAVVECFKVHMLDEEWGKWVDVKNLR 310
+HLVES G ++V Y + + + + Q +V FK+ +E G V +++
Sbjct: 250 EHLVESPAGETFLVKWYKKSSSKIIKGIAQMKTQALMV--FKL----DEQGNAVYTQDIG 303
Query: 311 DRAFVLSRSCNFSVSAKELIGYQGNCIYFKDTFNARMYNLDDNIIIT 357
D LS+S F V A G N + D ++LDD+ IIT
Sbjct: 304 DLCIFLSKSEPFCVLASSFPGLCPNNVILFDCDEGGFFDLDDSTIIT 350
>At5g66830 putative protein
Length = 394
Score = 34.7 bits (78), Expect = 0.088
Identities = 21/81 (25%), Positives = 36/81 (43%), Gaps = 2/81 (2%)
Query: 281 HHDQDAVVECFKVHMLDEEWGKWVDVKNLRDRAFVLSRSCNFSVSAKELIGYQGNCIYFK 340
H + + F+++ ++ KW +L D +L +V AK++ G + N IYF
Sbjct: 281 HRPSLSKIWSFEIYKMEGNNNKWEKTVSLGDETILLD--LGITVLAKDMQGIKANSIYFS 338
Query: 341 DTFNARMYNLDDNIIITIDLD 361
+ D+N I DLD
Sbjct: 339 NPTPYFKDQYDENEIFIFDLD 359
Score = 28.5 bits (62), Expect = 6.3
Identities = 29/106 (27%), Positives = 39/106 (36%), Gaps = 17/106 (16%)
Query: 7 WSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIPPSHPNSPSFPLQIPHTIFDSLYY 66
WS LP +L + L D R +SVC S+ S S PN+ QIP I +
Sbjct: 20 WSKLPSDLMQFVFDRL-GFADFQRAKSVCSSWLSVSRNSQPNN-----QIPWMI---RFP 70
Query: 67 LHQSTIYLIEPTNGSSNFNLPPLAPSYTK--------GWLIKVEES 104
+ L P + P L + K WL+ ES
Sbjct: 71 KDNNHCLLFNPEEEDKMYKTPNLGNDFAKSSCIASYGSWLLMQPES 116
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.140 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,004,190
Number of Sequences: 26719
Number of extensions: 469348
Number of successful extensions: 1184
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1105
Number of HSP's gapped (non-prelim): 50
length of query: 377
length of database: 11,318,596
effective HSP length: 101
effective length of query: 276
effective length of database: 8,619,977
effective search space: 2379113652
effective search space used: 2379113652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC149582.6