BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149576.2 + phase: 0
(538 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19860 unknown protein 738 0.0
At3g03310 unknown protein 434 e-122
At1g27480 unknown protein 59 7e-09
At5g13640 unknown protein 46 6e-05
At3g44830 putative protein 42 9e-04
At1g58350 putative protein 35 0.10
At4g09900 putative host response protein 32 0.68
At1g59124 PRM1 homolog (RF45) 32 0.68
At5g55660 putative protein 32 1.2
At1g10740 lipase like protein 32 1.2
At1g74750 31 1.5
At5g41190 unknown protein 31 2.0
At2g04960 putative protein on transposon FARE2.9 31 2.0
At5g34895 putative protein 30 2.6
At5g28080 mitogen activated protein kinase - like 30 2.6
At4g25770 unknown protein 30 3.4
At3g47270 putative protein 30 4.4
At3g30450 putative protein on FARE2.5 (cds2) 29 5.8
At3g16750 hypothetical protein 29 5.8
At2g14140 putative transposase of FARE2.8 (cds1) 29 5.8
>At4g19860 unknown protein
Length = 535
Score = 738 bits (1905), Expect = 0.0
Identities = 352/540 (65%), Positives = 438/540 (80%), Gaps = 8/540 (1%)
Query: 1 MTMLLEDVLRSVELWLRLIKKPQPQAYVNPNLDPVLLVPGVGGSILNAVNESDGSQERVW 60
M++LLE+++RSVE L+L + Q + YV+PNL+PVLLVPG+ GSILNAV+ +G++ERVW
Sbjct: 1 MSLLLEEIIRSVEALLKLRNRNQ-EPYVDPNLNPVLLVPGIAGSILNAVDHENGNEERVW 59
Query: 61 VRFLSAEYKLKTKLWSRYDPSTGKTVTLDQKSRIVVPEDRHGLHAIDVLDPDLVIGSEAV 120
VR A+++ +TK+WSR+DPSTGKT++LD K+ IVVP+DR GLHAIDVLDPD+++G E+V
Sbjct: 60 VRIFGADHEFRTKMWSRFDPSTGKTISLDPKTSIVVPQDRAGLHAIDVLDPDMIVGRESV 119
Query: 121 YYFHDMIVQMQKWGYQEGKTLFGFGYDFRQSNRLQETMDRFAEKLELIYNAAGGKKIDLI 180
YYFH+MIV+M WG++EGKTLFGFGYDFRQSNRLQET+D+FA+KLE +Y A+G KKI++I
Sbjct: 120 YYFHEMIVEMIGWGFEEGKTLFGFGYDFRQSNRLQETLDQFAKKLETVYKASGEKKINVI 179
Query: 181 SHSMGGLLVKCFMTLHSDIFEKYVKNWIAICAPFQGAPGCTNSTFLNGMSFVEGWEQNFF 240
SHSMGGLLVKCFM LHSDIFEKYV+NWIAI APF+GAPG ST LNGMSFV GWEQNFF
Sbjct: 180 SHSMGGLLVKCFMGLHSDIFEKYVQNWIAIAAPFRGAPGYITSTLLNGMSFVNGWEQNFF 239
Query: 241 ISKWSMHQLLIECPSIYELMACPNFHWKHVPLLELWRERLHED--GKSHVILESYPPRDS 298
+SKWSMHQLLIECPSIYELM CP F W+ P+LELWRE+ D G S+V+LESY +S
Sbjct: 240 VSKWSMHQLLIECPSIYELMCCPYFKWELPPVLELWREKESNDGVGTSYVVLESYCSLES 299
Query: 299 IEIFKQALVNNKVNHEGEELPLPFNSHIFEWANKTREILSSAKLPSGVKFYNIYGTNLAT 358
+E+F ++L NN ++ GE + LPFN I EWA+KT+++L+SAKLP VKFYNIYGTNL T
Sbjct: 300 LEVFTKSLSNNTADYCGESIDLPFNWKIMEWAHKTKQVLASAKLPPKVKFYNIYGTNLET 359
Query: 359 PHSICYGNADKPVSDLQELRYLQARYVCVDGDGTVPVESAKADGFNAEERVGIPGEHRGI 418
PHS+CYGN PV DL LRY Q Y+CVDGDGTVP+ESA ADG A RVG+PGEHRGI
Sbjct: 360 PHSVCYGNEKMPVKDLTNLRYFQPTYICVDGDGTVPMESAMADGLEAVARVGVPGEHRGI 419
Query: 419 LCEPHLFRILKHWLKAGDPDPFYNPLNDYVILPTAFEMERHKEKGLEVASLKEEWEIISK 478
L + +FR+LK WL G+PDPFYNP+NDYVILPT +E E+ E GLEVAS+KE W+IIS
Sbjct: 420 LNDHRVFRMLKKWLNVGEPDPFYNPVNDYVILPTTYEFEKFHENGLEVASVKESWDIISD 479
Query: 479 DQDGQSNTGDNKMTLSSISVSQEGANKS-HSEAHATVFVHTDNDGKQHIELNAVAVSVDA 537
D +N G T++SISVSQ G +++ +EA AT+ V +DG+QH+ELNAV+VSVDA
Sbjct: 480 D----NNIGTTGSTVNSISVSQPGDDQNPQAEARATLTVQPQSDGRQHVELNAVSVSVDA 535
>At3g03310 unknown protein
Length = 447
Score = 434 bits (1117), Expect = e-122
Identities = 206/403 (51%), Positives = 270/403 (66%), Gaps = 3/403 (0%)
Query: 33 DPVLLVPGVGGSILNAVNESDGSQERVWVRFLSAEYKLKTKLWSRYDPSTGKTVTLDQKS 92
DPVLLV G+GGSIL++ ++ S+ RVWVR A K LWS Y+P TG T LD
Sbjct: 24 DPVLLVSGIGGSILHSKKKNSKSEIRVWVRIFLANLAFKQSLWSLYNPKTGYTEPLDDNI 83
Query: 93 RIVVPEDRHGLHAIDVLDPDLVIGS---EAVYYFHDMIVQMQKWGYQEGKTLFGFGYDFR 149
++VP+D HGL+AID+LDP + VY+FHDMI + GY++G TLFG+GYDFR
Sbjct: 84 EVLVPDDDHGLYAIDILDPSWFVKLCHLTEVYHFHDMIEMLVGCGYKKGTTLFGYGYDFR 143
Query: 150 QSNRLQETMDRFAEKLELIYNAAGGKKIDLISHSMGGLLVKCFMTLHSDIFEKYVKNWIA 209
QSNR+ + +KLE Y +GG+K+ +ISHSMGGL+V CFM LH + F KYV WI
Sbjct: 144 QSNRIDLLILGLKKKLETAYKRSGGRKVTIISHSMGGLMVSCFMYLHPEAFSKYVNKWIT 203
Query: 210 ICAPFQGAPGCTNSTFLNGMSFVEGWEQNFFISKWSMHQLLIECPSIYELMACPNFHWKH 269
I PFQGAPGC N + L G+ FVEG E FF+S+W+MHQLL+ECPSIYE+MA P+F WK
Sbjct: 204 IATPFQGAPGCINDSILTGVQFVEGLESFFFVSRWTMHQLLVECPSIYEMMANPDFKWKK 263
Query: 270 VPLLELWRERLHEDGKSHVILESYPPRDSIEIFKQALVNNKVNHEGEELPLPFNSHIFEW 329
P + +WR++ D + V LES+ +SI++F AL NN++++ G ++ LPFN I +W
Sbjct: 264 QPEIRVWRKKSENDVDTSVELESFGLIESIDLFNDALKNNELSYGGNKIALPFNFAILDW 323
Query: 330 ANKTREILSSAKLPSGVKFYNIYGTNLATPHSICYGNADKPVSDLQELRYLQARYVCVDG 389
A KTREIL+ A+LP GV FYNIYG +L TP +CYG P+ DL E+ Y VDG
Sbjct: 324 AAKTREILNKAQLPDGVSFYNIYGVSLNTPFDVCYGTETSPIDDLSEICQTMPEYTYVDG 383
Query: 390 DGTVPVESAKADGFNAEERVGIPGEHRGILCEPHLFRILKHWL 432
DGTVP ESA A F A VG+ G HRG+L + +F +++ WL
Sbjct: 384 DGTVPAESAAAAQFKAVASVGVSGSHRGLLRDERVFELIQQWL 426
>At1g27480 unknown protein
Length = 432
Score = 58.9 bits (141), Expect = 7e-09
Identities = 103/436 (23%), Positives = 159/436 (35%), Gaps = 102/436 (23%)
Query: 28 VNPNLDPVLLVPGVGGSILNAVNESDGSQERVWVRFLSAEYKLKTKLWSR---------- 77
V N+ P++LVPG GG+ L + + VW K+ W R
Sbjct: 27 VGSNVYPLILVPGNGGNQLEVRLDREYKPSSVWCSSWLYPIHKKSGGWFRLWFDAAVLLS 86
Query: 78 -------------YDPSTGKTVTLDQKSRIVVPEDR----HGLHAIDVLDPDLVIGSEAV 120
YDP LD + R ++ LDP L +A
Sbjct: 87 PFTRCFSDRMMLYYDPD------LDDYQNAPGVQTRVPHFGSTKSLLYLDPRL---RDAT 137
Query: 121 YYFHDMIVQMQK-WGYQEGKTLFGFGYDFRQ----SNRLQETMDRFAEKLELIYNAAG-- 173
Y ++ ++K GY +T+ G YDFR S +F + L+ +
Sbjct: 138 SYMEHLVKALEKKCGYVNDQTILGAPYDFRYGLAASGHPSRVASQFLQDLKQLVEKTSSE 197
Query: 174 --GKKIDLISHSMGGLLVKCFMTLHSDIF-EKYVKNWIAICAPFQGAPGCTNSTFLNGMS 230
GK + L+SHS+GGL V F+ + + KY+K+++A+ AP+ G TF +G +
Sbjct: 198 NEGKPVILLSHSLGGLFVLHFLNRTTPSWRRKYIKHFVALAAPWGGTIS-QMKTFASGNT 256
Query: 231 FVEGWEQNFFISKWSMHQLLIECPSIYELMACPNFHWKHVPLLELWRERLHEDGKSHVIL 290
+ + HQ E + W +P +++ +R
Sbjct: 257 LGVPLVNPLLVRR---HQRTSE-----------SNQWL-LPSTKVFHDRT---------- 291
Query: 291 ESYPPRDSIEIFKQALVNNKVNHEGEELPLPFNSHIFEWA---NKTREI-LSSAKLPSGV 346
K +V +VN+ E+ F F KTR + L+ + GV
Sbjct: 292 ------------KPLVVTPQVNYTAYEMDRFFADIGFSQGVVPYKTRVLPLTEELMTPGV 339
Query: 347 KFYNIYGTNLATPHSICYGNADKPVSDLQELRYLQARYVCVDGDGTVPVES---AKADGF 403
IYG + TP + YG E++Y DGDGTV + S K D
Sbjct: 340 PVTCIYGRGVDTPEVLMYGKGG--FDKQPEIKY-------GDGDGTVNLASLAALKVDSL 390
Query: 404 NAEERVGIPGEHRGIL 419
N E G+ H IL
Sbjct: 391 NTVEIDGV--SHTSIL 404
>At5g13640 unknown protein
Length = 671
Score = 45.8 bits (107), Expect = 6e-05
Identities = 54/211 (25%), Positives = 83/211 (38%), Gaps = 31/211 (14%)
Query: 34 PVLLVPGV---GGSILNAVNESDGS-QERVWVRFLSAEYKLKTKLWSRYDPSTGKTVTLD 89
PV+ +PG+ G + +DG ++R+W YK + W + +T
Sbjct: 109 PVVFIPGIVTGGLELWEGKQCADGLFRKRLWGGTFGEVYK-RPLCWVEHMSLDNETGLDP 167
Query: 90 QKSRIVVPEDRHGLHAIDVLDPDLVIGSEAVYYFHDMIVQMQKWGYQEGKTLFGFGYDFR 149
R+ GL A D P + + +I + GY+E K ++ YD+R
Sbjct: 168 AGIRVRAVS---GLVAADYFAPGYFVWAV-------LIANLAHIGYEE-KNMYMAAYDWR 216
Query: 150 QSNRLQE----TMDRFAEKLELIYNAAGGKKIDLISHSMGGLLVKCFMTL---------- 195
S + E T+ R +EL+ + GGKK ++ HSMG L FM
Sbjct: 217 LSFQNTEVRDQTLSRMKSNIELMVSTNGGKKAVIVPHSMGVLYFLHFMKWVEAPAPLGGG 276
Query: 196 -HSDIFEKYVKNWIAICAPFQGAPGCTNSTF 225
D KY+K + I PF G P F
Sbjct: 277 GGPDWCAKYIKAVMNIGGPFLGVPKAVAGLF 307
Score = 28.9 bits (63), Expect = 7.5
Identities = 23/71 (32%), Positives = 32/71 (44%), Gaps = 13/71 (18%)
Query: 341 KLPSG--VKFYNIYGTNLATPHSICYGNADKPVSDL-----------QELRYLQARYVCV 387
KLP+ ++ Y++YG + T + Y P S + E L+A V
Sbjct: 511 KLPNAPEMEIYSLYGVGIPTERAYVYKLNQSPDSCIPFQIFTSAHEEDEDSCLKAGVYNV 570
Query: 388 DGDGTVPVESA 398
DGD TVPV SA
Sbjct: 571 DGDETVPVLSA 581
>At3g44830 putative protein
Length = 665
Score = 42.0 bits (97), Expect = 9e-04
Identities = 27/72 (37%), Positives = 37/72 (50%), Gaps = 5/72 (6%)
Query: 126 MIVQMQKWGYQEGKTLFGFGYDFRQSNRLQETMD----RFAEKLELIYNAAGGKKIDLIS 181
+I + K GY EGK L YD+R S E D R K+EL+Y G KK+ ++
Sbjct: 177 LIENLAKIGY-EGKNLHMASYDWRLSFHNTEVRDQSLSRLKSKIELMYATNGFKKVVVVP 235
Query: 182 HSMGGLLVKCFM 193
HSMG + F+
Sbjct: 236 HSMGAIYFLHFL 247
>At1g58350 putative protein
Length = 794
Score = 35.0 bits (79), Expect = 0.10
Identities = 37/169 (21%), Positives = 76/169 (44%), Gaps = 24/169 (14%)
Query: 147 DFRQ-SNRLQETMDRFAEKLELIYNAAG---GKKIDLISHSMGGLLVKCFMTLH-SDIFE 201
DFR+ RL + + F ++ + Y G K+ + HS+G ++++ + + +
Sbjct: 557 DFREMGQRLAQEVVSFLKRKKDRYARQGHLKSIKLSFVGHSIGNVIIRTAIADSLMEPYR 616
Query: 202 KYVKNWIAICAPFQGAPGCTNSTFLNGMSFVEGWEQNFFISKWSMHQL-LIECPSIYELM 260
KY+ ++++ P G TNS F +G+ W S +HQL L + P +
Sbjct: 617 KYLHTYLSLSGPHLGYLYSTNSLFNSGL-----WLLKKLKSTQVIHQLTLTDDPDL---- 667
Query: 261 ACPNFHWKHVPLLELWRERLHEDGKSHVILESYPPRDSIEIFKQALVNN 309
+H +L +++ E+ K+ ++L S P+D + A + +
Sbjct: 668 -------RHTFFYKLCKQKTLENFKNIILLSS--PQDGYVPYHSARIES 707
>At4g09900 putative host response protein
Length = 256
Score = 32.3 bits (72), Expect = 0.68
Identities = 22/73 (30%), Positives = 38/73 (51%), Gaps = 6/73 (8%)
Query: 141 LFGFGYDFRQSNRLQETMDRFAEKL-ELIYNAAGGKKIDLISHSMGGLLVKCFMTLHSDI 199
L G G++ +N + T++ +++ L ELI N +K+ L+ HS GG V + +
Sbjct: 38 LAGSGFNMTDANSVS-TLEEYSKPLIELIQNLPAEEKVILVGHSTGGACVSYAL----ER 92
Query: 200 FEKYVKNWIAICA 212
F + + I ICA
Sbjct: 93 FPEKISKAIFICA 105
>At1g59124 PRM1 homolog (RF45)
Length = 1155
Score = 32.3 bits (72), Expect = 0.68
Identities = 24/81 (29%), Positives = 44/81 (53%), Gaps = 10/81 (12%)
Query: 232 VEGWEQNFFISKWSM---HQLLIE-CPSIYELMACPNFHW--KHVPLLELWRERLHEDGK 285
+E WE+ + + + SM H L I+ CP + +L F + K++ + E W+ERL E G+
Sbjct: 896 LEEWEE-WIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLKISERWKERLSEGGE 954
Query: 286 SHVILESYPPRDSIEIFKQAL 306
+ ++ P S+E + + L
Sbjct: 955 EYYKVQHIP---SVEFYHRVL 972
>At5g55660 putative protein
Length = 759
Score = 31.6 bits (70), Expect = 1.2
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 455 EMERHKEKGLEVASLKEEWEIISKDQDGQSNTGDNKMTLSSISVSQEGANKSHSEAHATV 514
E ++ ++ GLE + +E K +G+S TGD ++ ++ G +K EA
Sbjct: 43 ESKKEEDTGLEKMEIDDE----GKQHEGESETGDKEVEVTEEEKKDVGEDKEQPEADKMD 98
Query: 515 FVHTDNDGKQHIELNAVAVSVDAL 538
D + K ++ VA DA+
Sbjct: 99 EDTDDKNLKADDGVSGVATEEDAV 122
>At1g10740 lipase like protein
Length = 473
Score = 31.6 bits (70), Expect = 1.2
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 177 IDLISHSMGGLLVKCFMTLHSDI----FEKYVKNWIAICAPFQGAPGCTNSTFLNGMSFV 232
I + HS G +V+ + +D FE+ +NW+ GA T T+L+GM
Sbjct: 159 IHFVGHSAGAQVVRVLQQMLADQAFEGFEETNENWVLSVTSLSGAFNGTTRTYLDGMRTD 218
Query: 233 EG 234
+G
Sbjct: 219 DG 220
>At1g74750
Length = 855
Score = 31.2 bits (69), Expect = 1.5
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 127 IVQMQKWGYQEGKTL--FGFGYDFRQSNRLQETMDRFAEKLELIY 169
I++ KWG+ + L FGF D Q+N++ + MD +A L Y
Sbjct: 303 ILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDNYANALGFFY 347
>At5g41190 unknown protein
Length = 602
Score = 30.8 bits (68), Expect = 2.0
Identities = 22/71 (30%), Positives = 34/71 (46%), Gaps = 12/71 (16%)
Query: 463 GLEVASLKEEWEIISKDQDGQSNTGD--------NKMTLSSISVSQEGANKSHSEAHATV 514
G VA+L EEWE + + + +SN N ++S +VS+ G+ SH+E H
Sbjct: 168 GSNVANL-EEWEALENETEEKSNANSKILPLKDLNMNIIASDNVSEVGSVVSHTENHEE- 225
Query: 515 FVHTDNDGKQH 525
GK+H
Sbjct: 226 --DVQEGGKKH 234
>At2g04960 putative protein on transposon FARE2.9
Length = 292
Score = 30.8 bits (68), Expect = 2.0
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 241 ISKWSMHQLLIECPSIYELMACPNFHWKHVPLLELWRERLHEDGKSHVILESYPPR 296
+ KW+ ++L+ + S E + P+ W+ V + E+W E+ ++ L +P +
Sbjct: 202 VKKWAKNKLIRDLLSSLEKILWPDSKWQKVEIWEMWDEKKYKLALKKATLLIHPDK 257
>At5g34895 putative protein
Length = 490
Score = 30.4 bits (67), Expect = 2.6
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 241 ISKWSMHQLLIECPSIYELMACPNFHWKHVPLLELWRERLHEDGKSHVILESYPPR 296
+ KW+ ++L+ + S E + P+ W+ V + E+W E+ ++ L +P +
Sbjct: 400 VKKWAKNKLIRDLLSSLEEILWPDSKWQKVEIWEMWDEKKYKLALKKATLLVHPDK 455
>At5g28080 mitogen activated protein kinase - like
Length = 406
Score = 30.4 bits (67), Expect = 2.6
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 465 EVASLKEEWEIISKDQDGQSNTGDNKMTLSSISVSQEGANKSHSEAHATVFVHTDNDGKQ 524
E+ASL W I + +S+ G + M + + ++G + H F T ND +
Sbjct: 346 EIASLVPNWSIFCSSESNRSSVG-SVMDFNEMQCGRDGCEEKHGRFEEITFEITVNDSDE 404
>At4g25770 unknown protein
Length = 418
Score = 30.0 bits (66), Expect = 3.4
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 21/92 (22%)
Query: 163 EKLELIYNAAGGKKIDLISHSMGGLLVKCFM-----------TLHSDIFEKYVK------ 205
E L ++ + +G KKI ++HS+GGL+ + + +L S EK +
Sbjct: 150 EVLGVVKHRSGLKKISFVAHSLGGLVARYAIGKLYEQPGEVDSLDSPSKEKSARGGEIAG 209
Query: 206 ----NWIAICAPFQGAPGCTNSTFLNGMSFVE 233
N+I P G+ G L G+ F+E
Sbjct: 210 LEPMNFITFATPHLGSRGHRQFPILCGLPFLE 241
>At3g47270 putative protein
Length = 671
Score = 29.6 bits (65), Expect = 4.4
Identities = 10/42 (23%), Positives = 25/42 (58%)
Query: 241 ISKWSMHQLLIECPSIYELMACPNFHWKHVPLLELWRERLHE 282
+ KW+ ++L+ + S E + P+ W+ V + ++W E+ ++
Sbjct: 581 VKKWAKNKLIRDLLSSLEEILWPDSKWQKVKIWDMWNEKKYK 622
>At3g30450 putative protein on FARE2.5 (cds2)
Length = 800
Score = 29.3 bits (64), Expect = 5.8
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 241 ISKWSMHQLLIECPSIYELMACPNFHWKHVPLLELWRERLHEDGKSHVILESYPPR 296
+ KW+ ++L+ + S E + P+ W+ V + ++W E+ ++ L +P +
Sbjct: 710 VKKWAKNKLIRDLLSSLEEILWPDSKWQKVEIWDMWDEKKYKLALKKATLLIHPDK 765
>At3g16750 hypothetical protein
Length = 194
Score = 29.3 bits (64), Expect = 5.8
Identities = 16/39 (41%), Positives = 17/39 (43%)
Query: 477 SKDQDGQSNTGDNKMTLSSISVSQEGANKSHSEAHATVF 515
S D DG SN D S S E A + EAHA F
Sbjct: 156 SSDDDGSSNDDDGSSDDESHSSDDESAGDDNIEAHANGF 194
>At2g14140 putative transposase of FARE2.8 (cds1)
Length = 783
Score = 29.3 bits (64), Expect = 5.8
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 241 ISKWSMHQLLIECPSIYELMACPNFHWKHVPLLELWRERLHEDGKSHVILESYPPR 296
+ KW+ ++L+ + S E + P+ W+ V + ++W E+ ++ L +P +
Sbjct: 693 VKKWAKNKLIRDLLSSLEEILWPDSKWQKVEIWDMWDEKKYKLALKKATLLIHPDK 748
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.318 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,504,891
Number of Sequences: 26719
Number of extensions: 629219
Number of successful extensions: 1485
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1458
Number of HSP's gapped (non-prelim): 29
length of query: 538
length of database: 11,318,596
effective HSP length: 104
effective length of query: 434
effective length of database: 8,539,820
effective search space: 3706281880
effective search space used: 3706281880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC149576.2