BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149496.5 + phase: 0
(1716 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61330 copia-type polyprotein 725 0.0
At1g48710 hypothetical protein 719 0.0
At3g60170 putative protein 683 0.0
At2g15650 putative retroelement pol polyprotein 677 0.0
At3g25450 hypothetical protein 642 0.0
At1g32590 hypothetical protein, 5' partial 639 0.0
At3g59720 copia-type reverse transcriptase-like protein 595 e-170
At2g20460 putative retroelement pol polyprotein 586 e-167
At2g05390 putative retroelement pol polyprotein 578 e-165
At1g31210 putative reverse transcriptase 567 e-161
At2g16000 putative retroelement pol polyprotein 562 e-160
At1g70010 hypothetical protein 546 e-155
At1g37110 539 e-153
At3g45520 copia-like polyprotein 530 e-150
At2g07550 putative retroelement pol polyprotein 528 e-149
At2g13930 putative retroelement pol polyprotein 526 e-149
At5g35820 copia-like retrotransposable element 515 e-146
At2g21460 putative retroelement pol polyprotein 509 e-144
At2g16670 putative retroelement pol polyprotein 504 e-142
At4g27210 putative protein 491 e-138
>At3g61330 copia-type polyprotein
Length = 1352
Score = 725 bits (1871), Expect = 0.0
Identities = 387/1018 (38%), Positives = 576/1018 (56%), Gaps = 48/1018 (4%)
Query: 665 REKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSS 719
+++ WYLDSG S HM G K++F L G V G ++ G G I
Sbjct: 329 QKENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDH 388
Query: 720 ISINNVWLVDGLKHNLLSISQFCDNGYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKIN 779
I+NV+ + +K N+LS+ Q + GYD+ N ++ ++ IT ++ +N
Sbjct: 389 QFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLN 448
Query: 780 F-SDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGA 838
+D+A +C ++ W+WH R GH N+ + +S+ ++V+GLP I+ H + +C
Sbjct: 449 IRNDIAQCLKMCY---KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN-HPNQVCEG 504
Query: 839 CQKGKIVKSTFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKF 898
C GK K +F + +PLEL+H D+ GP+ SL S Y L+ +DD+SR TWV F
Sbjct: 505 CLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYF 564
Query: 899 IKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRT 958
+K K E+F F ++ E L I +RSD GGEF ++ F +CE +GI + + PR+
Sbjct: 565 LKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRS 624
Query: 959 PQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELF 1018
PQQNGVVERKNRT+ EMAR+M+ L K WAEAV + Y+ NR + + KT E +
Sbjct: 625 PQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAW 684
Query: 1019 KGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVEE 1078
GR+P +S+ FG + + K D K+++ IF+GY SK Y++YN +T
Sbjct: 685 SGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTII 744
Query: 1079 SIHVKFDDREPGNKTPEQSESNAGTTDSEDASESDQPSDSEKHSEVESRPEAEITPEAES 1138
S ++ FD+ + + + N ED E P+ E SE + P T
Sbjct: 745 SRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPE---PTREEPPSEEPTTPPTSPTSSQIE 801
Query: 1139 NSEAETSPVEQNENASEDVQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEE 1198
S +E +P ++ +V +N + +
Sbjct: 802 ESSSERTPRFRSIQELYEVTENQENL---------------------------------- 827
Query: 1199 SLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRN 1258
+L L + EP ++A+ W AM EE+ Q+ND W+L P IG KWV++
Sbjct: 828 TLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKA 887
Query: 1259 KLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDV 1318
K N KGEV R KARLVA+GYSQ+ GIDY E FAPVARLE +RL++S A + ++QMDV
Sbjct: 888 KKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDV 947
Query: 1319 KSAFLNGVIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDF 1378
KSAFLNG +EEEVY++QP G+ D V +LKK LYGLKQAPRAW R+ + + DF
Sbjct: 948 KSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDF 1007
Query: 1379 ERGQVDTTLFGKTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFF 1438
+ + L+ K K+DILI +YVDD+IF N S+ +EF K M EFEM+ +G + ++
Sbjct: 1008 IKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYY 1067
Query: 1439 LGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYR 1498
LGI++ Q G+++ Q Y KE+LKKFK++D + TPM LSK++ G VD ++
Sbjct: 1068 LGIEVKQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFK 1127
Query: 1499 GMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLD 1558
++GSL YLT +RPDIL++V + +R+ P +H A KRI RY+KGT N GL Y + D
Sbjct: 1128 SLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSD 1187
Query: 1559 YKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCT 1618
YKL+G+ D+D+ GD +RKSTSG ++G+ +W SK+Q + +ST EAEY++A SC
Sbjct: 1188 YKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVC 1247
Query: 1619 QLLWMKHQLEDYQI-NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQK 1675
+W+++ L++ + I+ DN +AI L+KNP+ H R+KHI+ ++H+IR+ V K
Sbjct: 1248 HAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSK 1305
Score = 78.2 bits (191), Expect = 4e-14
Identities = 69/304 (22%), Positives = 134/304 (43%), Gaps = 26/304 (8%)
Query: 45 WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIV 104
W M + + D +W+I+E G ++ + EG+ + + K+ K +I
Sbjct: 21 WSLRMKAILGAHD--VWEIVEKGF--IEPENEGSL--SQTQKDGLRDSRKRDKKALCLIY 74
Query: 105 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEM 164
+ + K+ + ++AK + L +++G+ +VK+ + L ++E +MK+ E + +
Sbjct: 75 QGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDY 134
Query: 165 YSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 224
+SR T+ + L+ + + K+LRSL ++ VT IEE KDL +++E L+ SL
Sbjct: 135 FSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSL 194
Query: 225 KVHEMSLNEHESSKKSKSIALPSKGKTSKSSKAYKASESEEESPDRDSDEDQSVKMAMLS 284
+ +E E KK + IA + E+ + R + +
Sbjct: 195 QAYE------EKKKKKEDIA------EQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYG 242
Query: 285 NKLEYLARK----QKKFLSKRGGYKNSKK----EDQKGCFNCKKPGHFIADCPDLQKEKS 336
N + + Q+ S RG K K + C+NC K GH+ ++C +K
Sbjct: 243 NGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKF 302
Query: 337 KSKS 340
+ K+
Sbjct: 303 EEKA 306
>At1g48710 hypothetical protein
Length = 1352
Score = 719 bits (1857), Expect = 0.0
Identities = 385/1018 (37%), Positives = 573/1018 (55%), Gaps = 48/1018 (4%)
Query: 665 REKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSS 719
+E+ WYLDSG S HM G K++F L G V G ++ G G I
Sbjct: 329 QEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDH 388
Query: 720 ISINNVWLVDGLKHNLLSISQFCDNGYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKIN 779
I+NV+ + +K N+LS+ Q + GYD+ N ++ ++ IT ++ +N
Sbjct: 389 QFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLN 448
Query: 780 F-SDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGA 838
+D+A +C ++ W+WH R GH N+ + +S+ ++V+GLP I+ H + +C
Sbjct: 449 IRNDIAQCLKMCY---KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN-HPNQVCEG 504
Query: 839 CQKGKIVKSTFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKF 898
C GK K +F + + LEL+H D+ GP+ SL S Y L+ +DD+SR TWV F
Sbjct: 505 CLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYF 564
Query: 899 IKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRT 958
+K K E+F F ++ E L I +RSD GGEF ++ F +CE +GI + + PR+
Sbjct: 565 LKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRS 624
Query: 959 PQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELF 1018
PQQNGV ERKNRT+ EMAR+M+ L K WAEAV + Y+ NR + + KT E +
Sbjct: 625 PQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAW 684
Query: 1019 KGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVEE 1078
GR+ +S+ FG + + K D K+++ IF+GY SK Y++YN +T
Sbjct: 685 SGRKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTII 744
Query: 1079 SIHVKFDDREPGNKTPEQSESNAGTTDSEDASESDQPSDSEKHSEVESRPEAEITPEAES 1138
S ++ FD+ + + + N ED E P+ E SE + P T
Sbjct: 745 SRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPE---PTREEPPSEEPTTPPTSPTSSQIE 801
Query: 1139 NSEAETSPVEQNENASEDVQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEE 1198
S +E +P ++ +V +N + +
Sbjct: 802 ESSSERTPRFRSIQELYEVTENQENL---------------------------------- 827
Query: 1199 SLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRN 1258
+L L + EP +EA+ W AM EE+ Q+ND W+L P IG KWV++
Sbjct: 828 TLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKA 887
Query: 1259 KLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDV 1318
K N KGEV R KARLVA+GY Q+ GIDY E FAPVARLE +RL++S A + ++QMDV
Sbjct: 888 KKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDV 947
Query: 1319 KSAFLNGVIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDF 1378
KSAFLNG +EEEVY++QP G+ D V +LKK+LYGLKQAPRAW R+ + + DF
Sbjct: 948 KSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDF 1007
Query: 1379 ERGQVDTTLFGKTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFF 1438
+ + L+ K K+DILI +YVDD+IF N S+ +EF K M EFEM+ +G + ++
Sbjct: 1008 IKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYY 1067
Query: 1439 LGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYR 1498
LGI++ Q G+++ Q Y KE+LKKFK++D + TPM LSK++ G VD ++
Sbjct: 1068 LGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFK 1127
Query: 1499 GMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLD 1558
++GSL YLT +RPDIL++V + +R+ P +H A KRI RY+KGT N GL Y + D
Sbjct: 1128 SLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSD 1187
Query: 1559 YKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCT 1618
YKL+G+ D+D+ GD +RKSTSG ++G+ +W SK+Q + +ST EAEY++A SC
Sbjct: 1188 YKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVC 1247
Query: 1619 QLLWMKHQLEDYQI-NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQK 1675
+W+++ L++ + I+ DN +AI L+KNP+ H R+KHI+ ++H+IR+ V K
Sbjct: 1248 HAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSK 1305
Score = 77.8 bits (190), Expect = 5e-14
Identities = 73/332 (21%), Positives = 148/332 (43%), Gaps = 30/332 (9%)
Query: 45 WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIV 104
W M + + D +W+I+E G ++ + EG+ + + K+ K +I
Sbjct: 21 WSLRMKAILGAHD--VWEIVEKGF--IEPENEGSL--SQTQKDGLRDSRKRDKKALCLIY 74
Query: 105 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEM 164
+ + K+ + ++AK + L +++G+ +VK+ + L ++E +MK+ E + +
Sbjct: 75 QGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDY 134
Query: 165 YSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 224
+SR T+ + L+ + + K+LRSL ++ VT IEE KDL +++E L+ SL
Sbjct: 135 FSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSL 194
Query: 225 KVHEMSLNEHESSKKSKSIALPSKGKTSKSSKAYKASESEEESPDRDSDEDQSVKMAMLS 284
+ +E E KK + I + E+ + R + +
Sbjct: 195 QAYE------EKKKKKEDII------EQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYG 242
Query: 285 NKLEYLARK----QKKFLSKRGGYKNSKK----EDQKGCFNCKKPGHFIADCPDLQKEKS 336
N + + Q+ S RG K K + C+NC K GH+ ++C + +
Sbjct: 243 NGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASEC---KAPSN 299
Query: 337 KSKSKKSSFSSSKFRKQIKKSLMATWEDLDSE 368
K +K+++ K +++ LMA+++ + E
Sbjct: 300 KKFEEKANYVEEKIQEE-DMLLMASYKKDEQE 330
>At3g60170 putative protein
Length = 1339
Score = 683 bits (1763), Expect = 0.0
Identities = 388/1051 (36%), Positives = 592/1051 (55%), Gaps = 48/1051 (4%)
Query: 648 LNDQKPLSIHPKVCIRAREKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTG 707
L +++ L + V + W+LDSGCS HMTG K F L VK G +
Sbjct: 277 LEEEEELLLMAYVEQNQANRDEVWFLDSGCSNHMTGSKEWFSELEEGFNRTVKLGNDTRM 336
Query: 708 KIIGTGTI-----GNSSISINNVWLVDGLKHNLLSISQFCDNGYDVMFSKTNCTLVNKND 762
++G G++ G + + I V+ V L++NLLS+ Q + G ++ C + + +
Sbjct: 337 SVVGKGSVKVKVNGVTQV-IPEVYYVPELRNNLLSLGQLQERGLAILIRDGTCKVYHPSK 395
Query: 763 KSITFKGKRVENVYKINFSDLADQKVVCLLS---MNDKKWVWHKRLGHANWRLISKISKL 819
+I ++ + + + +CL + M+ + +WH R GH N + ++
Sbjct: 396 GAIMETNMSGNRMFFL-LASKPQKNSLCLQTEEVMDKENHLWHCRFGHLNQEGLKLLAHK 454
Query: 820 QLVKGLPNIDYHSDALCGACQKGKIVKSTFKSKDIVSTSRPLELLHIDLFGPVNTASLYG 879
++V GLP + + +C C GK + + K +S L+L+H D+ GP+ S G
Sbjct: 455 KMVIGLPILKATKE-ICAICLTGKQHRESMSKKTSWKSSTQLQLVHSDICGPITPISHSG 513
Query: 880 SKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEP 939
+Y L +DD++R TWV F+ K A F F ++ E + +R+D GGEF +
Sbjct: 514 KRYILSFIDDFTRKTWVYFLHEKSEAFATFKIFKASVEKEIGAFLTCLRTDRGGEFTSNE 573
Query: 940 FELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCY 999
F FC HGI + ++ TPQQNGV ERKNRT+ R+M+ E + K FW+EA S +
Sbjct: 574 FGEFCRSHGISRQLTAAFTPQQNGVAERKNRTIMNAVRSMLSERQVPKMFWSEATKWSVH 633
Query: 1000 IQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGY 1059
IQNR + T E + GR+P + YF FGC Y+ K D K+++ +FLG
Sbjct: 634 IQNRSPTAAVEGMTPEEAWSGRKPVVEYFRVFGCIGYVHIPDQKRSKLDDKSKKCVFLGV 693
Query: 1060 SERSKAYRVYNSETHCVEESIHVKFDDREPGNKTPEQSESNAGTTDSEDASESDQPSDSE 1119
SE SKA+R+Y+ + S V FD+ + + E+ T + D D E
Sbjct: 694 SEESKAWRLYDPVMKKIVISKDVVFDEDKSWDWDQADVEAKEVTLECGD-------EDDE 746
Query: 1120 KHSEVESRPEAEITPE-AESNSEAETSPV-EQNENASEDVQDNTQQVIQPK---FKHKSS 1174
K+SEV P A +P S++ +SP+ + A V + +P +++
Sbjct: 747 KNSEVVE-PIAVASPNHVGSDNNVSSSPILAPSSPAPSPVAAKVTRERRPPGWMADYETG 805
Query: 1175 HPEELIIGSKDSPRRTRSHFRQEESLIGLLSII----EPKTVEEALSDDGWILAMQEELN 1230
EE+ EE+L +L ++ +P ++A+ D W AM+ E+
Sbjct: 806 EGEEI-----------------EENLSVMLLMMMTEADPIQFDDAVKDKIWREAMEHEIE 848
Query: 1231 QFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETF 1290
+N+ W+L P IG KWV++ KLNE GEV + KARLVA+GY+Q GIDYTE F
Sbjct: 849 SIVKNNTWELTTLPKGFTPIGVKWVYKTKLNEDGEVDKYKARLVAKGYAQCYGIDYTEVF 908
Query: 1291 APVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDIKHPDHVYK 1350
APVARL+ +R +L+ + ++Q+DVKSAFL+G ++EEVYV+QP GF + VYK
Sbjct: 909 APVARLDTVRTILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQPEGFIREGEEEKVYK 968
Query: 1351 LKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFGKTLKKDILIVQIYVDDIIFGS 1410
L+K+LYGLKQAPRAWY R+ + +K +FER + TLF KT +ILIV +YVDD+IF
Sbjct: 969 LRKALYGLKQAPRAWYSRIEAYFLKEEFERCPSEHTLFTKTRVGNILIVSLYVDDLIFTG 1028
Query: 1411 TNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDC 1470
++ ++C EF K M EFEMS +G++K FLGI++ QS G+++ Q +Y +E+L +F +++
Sbjct: 1029 SDKAMCDEFKKSMMLEFEMSDLGKMKHFLGIEVKQSDGGIFICQRRYAREVLARFGMDES 1088
Query: 1471 KVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRE 1530
+ P+ P L+K++ G VD+ +++ ++GSL+YLT +RPD+++ VCL +RF S+PR
Sbjct: 1089 NAVKNPIVPGTKLTKDENGEKVDETMFKQLVGSLMYLTVTRPDLMYGVCLISRFMSNPRM 1148
Query: 1531 SHLTAVKRIFRYLKGTTNLGLLY--RKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGE 1588
SH A KRI RYLKGT LG+ Y RK+ KL+ F D+DYAGD +R+STSG +
Sbjct: 1149 SHWLAAKRILRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYAGDLNDRRSTSGFVFLMAS 1208
Query: 1589 NLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINANSIP-IYCDNTAAI 1647
I WASK+Q +A+ST EAEYI+AA C Q +W++ LE S I CDN++ I
Sbjct: 1209 GAICWASKKQPVVALSTTEAEYIAAAFCACQCVWLRKVLEKLGAEEKSATVINCDNSSTI 1268
Query: 1648 CLSKNPILHSRAKHIEIKHHFIRDYVQKGIL 1678
LSK+P+LH ++KHIE++ H++RD V ++
Sbjct: 1269 QLSKHPVLHGKSKHIEVRFHYLRDLVNGDVV 1299
Score = 110 bits (275), Expect = 7e-24
Identities = 78/301 (25%), Positives = 136/301 (44%), Gaps = 43/301 (14%)
Query: 33 PKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKL 92
P+F+G + +W M +F+ ELW ++E+G+ + + + +R A ++
Sbjct: 13 PRFDG---YYDFWSMTMENFLRS--RELWRLVEEGIPAIVVGTTPVSEAQR---SAVEEA 64
Query: 93 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 152
K K++ + +I R + DKST+KA++ S+ ++GS KVK A+ L ++EL
Sbjct: 65 KLKDLKVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFEL 124
Query: 153 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 212
MK+ E I+ R T+V+ ++ + S VSKILRSL ++ V +IEE+ DL
Sbjct: 125 LAMKEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDL 184
Query: 213 NTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKTSKSSKAYKASESEEESPDRDS 272
+TLS+++L SL VHE LN H +++ + + + ++ S R
Sbjct: 185 STLSIDELHGSLLVHEQRLNGHVQEEQALKVTHEERPSQGRGRGVFRGSRGRGRGRGRSG 244
Query: 273 DEDQSVKMAMLSNKLEYLARKQKKFLSKRGGYKNSKKEDQKGCFNCKKPGHFIADCPDLQ 332
V+ C+ C GHF +CP+ +
Sbjct: 245 TNRAIVE-----------------------------------CYKCHNLGHFQYECPEWE 269
Query: 333 K 333
K
Sbjct: 270 K 270
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 677 bits (1746), Expect = 0.0
Identities = 377/1019 (36%), Positives = 570/1019 (54%), Gaps = 46/1019 (4%)
Query: 671 WYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSIS-------IN 723
W +DSGC+ HMT E+ F + ++ + G I+ T G+ ++ I
Sbjct: 326 WLVDSGCTNHMTKEERYFSNINKSIKVPIRV---RNGDIVMTAGKGDITVMTRHGKRIIK 382
Query: 724 NVWLVDGLKHNLLSISQFCDNGYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKINFSDL 783
NV+LV GL+ NLLS+ Q +GY V F C + + N K I + + +KI S +
Sbjct: 383 NVFLVPGLEKNLLSVPQIISSGYWVRFQDKRCIIQDANGKEI-MNIEMTDKSFKIKLSSV 441
Query: 784 ADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGK 843
++ + + + WHKRLGH + + + ++ +LV GLP + C AC GK
Sbjct: 442 EEEAMTANVQTEE---TWHKRLGHVSNKRLQQMQDKELVNGLPRFKVTKET-CKACNLGK 497
Query: 844 IVKSTFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKD 903
+ +F + T LE++H D+ GP+ S+ GS+Y ++ +DDY+ WV F+K K
Sbjct: 498 QSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQKS 557
Query: 904 YACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNG 963
F F ++ + I +R P E+FCE GI + + P +PQQNG
Sbjct: 558 ETFATFKKFKALVEKQSNCSIKTLR----------PMEVFCEDEGINRQVTLPYSPQQNG 607
Query: 964 VVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEK-TAYELFKGRR 1022
ERKNR+L EMAR+M+ E +L WAEAV TS Y+QNR+ + + + T E + G +
Sbjct: 608 AAERKNRSLVEMARSMLVEQDLPLKLWAEAVYTSAYLQNRLPSKAIEDDVTPMEKWCGHK 667
Query: 1023 PNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVEESIHV 1082
PN+S+ FG CY+ +K DAKA+ GI +GYS ++K YRV+ E VE S V
Sbjct: 668 PNVSHLRIFGSICYVHIPDQKRRKLDAKAKCGILIGYSNQTKGYRVFLLEDEKVEVSRDV 727
Query: 1083 KFDDREPGNKTPEQSESNAGTTDSEDASESDQPSDSEKHSEVESRPEAEITPEAESNSEA 1142
F + + + ++ D ES ++ H + A +N E
Sbjct: 728 VFQEDKKWDWDKQEEVKKTFVMSINDIQESRDQQETSSHDLSQIDDHA-------NNGEG 780
Query: 1143 ETSPVEQNENASEDVQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIG 1202
ETS ++ ++ ++ ++ PK K+KS +E++ + +PR Q
Sbjct: 781 ETSSHVLSQVNDQEERETSES---PK-KYKSM--KEIL---EKAPRMENDEAAQGIEAC- 830
Query: 1203 LLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNE 1262
L++ EP+T +EA D W AM EE+ ++N W L+ KP +KN+I KW+++ K +
Sbjct: 831 LVANEEPQTYDEARGDKEWEEAMNEEIKVIEKNRTWKLVDKPEKKNVISVKWIYKIKTDA 890
Query: 1263 KGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAF 1322
G ++KARLVA+G+SQ+ GIDY ETFAPV+R + IR LL+YA LYQMDVKSAF
Sbjct: 891 SGNHVKHKARLVARGFSQEYGIDYLETFAPVSRYDTIRALLAYAAQMKWRLYQMDVKSAF 950
Query: 1323 LNGVIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQ 1382
LNG +EEEVYV QPPGF + V +L K+LYGLKQAPRAWY+R+ ++ I+N F R
Sbjct: 951 LNGELEEEVYVTQPPGFVIEGKEEKVLRLYKALYGLKQAPRAWYERIDSYFIQNGFARSM 1010
Query: 1383 VDTTLFGKTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQ 1442
D L+ K +D+LIV +YVDD+I N L F K M+DEFEM+ +G L +FLG++
Sbjct: 1011 NDAALYSKKKGEDVLIVSLYVDDLIITGNNTHLINTFKKNMKDEFEMTDLGLLNYFLGME 1070
Query: 1443 INQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLS--KEDTGTVVDQKLYRGM 1500
+NQ G+++ Q KY +L+ KF +++ K ++TP+ P + D D YR +
Sbjct: 1071 VNQDDSGIFLSQEKYANKLIDKFGMKESKSVSTPLTPQGKRKGVEGDDKEFADPTKYRRI 1130
Query: 1501 IGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK 1560
+G LLYL ASRPD++++ +R+ S P H KR+ RY+KGT+N G+L+ +
Sbjct: 1131 VGGLLYLCASRPDVMYASSYLSRYMSSPSIQHYQEAKRVLRYVKGTSNFGVLFTSKETPR 1190
Query: 1561 LIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQL 1620
L+G+ D+D+ G ++KST+G LG + W S +Q T+A STAEAEYI+ + Q
Sbjct: 1191 LVGYSDSDWGGSLEDKKSTTGYVFTLGLAMFCWQSCKQQTVAQSTAEAEYIAVCAATNQA 1250
Query: 1621 LWMKHQLEDYQIN-ANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGIL 1678
+W++ ED+ + IPI CDN +AI + +NP+ H R KHIEIK+HF+R+ KG++
Sbjct: 1251 IWLQRLFEDFGLKFKEGIPILCDNKSAIAIGRNPVQHRRTKHIEIKYHFVREAEHKGLI 1309
Score = 84.0 bits (206), Expect = 7e-16
Identities = 65/299 (21%), Positives = 137/299 (45%), Gaps = 16/299 (5%)
Query: 38 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 97
D E++ +W M + +LW ++E+GV + E R T ++ +
Sbjct: 13 DGEKYDFWSIKMATIFR--TRKLWSVVEEGVPVEPVQAEETPETARAKTLREEAVTNDTM 70
Query: 98 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 157
++ I+ ++ + +++ S++K + L ++GS +V+ K L +YE +M D
Sbjct: 71 ALQ-ILQTAVTDQIFSRIAAASSSKEAWDVLKDEYQGSPQVRLVKLQSLRREYENLKMYD 129
Query: 158 DESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSV 217
+++I+ + L L + + + KIL SLP+++ V+ +E+ +DL+ L++
Sbjct: 130 NDNIKTFTDKLIVLEIQLTYHGEKKTNTQLIQKILISLPAKFDSIVSVLEQTRDLDALTM 189
Query: 218 EDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKTSKSSKAYKASESEEESPDRDSDEDQS 277
+L+ LK E + E S K + + SKG+ S ++ + +R + + +
Sbjct: 190 SELLGILKAQEARVTAREESTKEGAFYVRSKGRES--------GFKQDNTNNRVNQDKKW 241
Query: 278 VKMAMLSNKLEYLARKQKKFLSKRGGYKNSKKEDQKGCFNCKKPGHFIADCPDLQKEKS 336
S E R++ K + +K+ + K C+ C K GH+ +C KE++
Sbjct: 242 CGFHKSSKHTEEECREK----PKNDDHGKNKRSNIK-CYKCGKIGHYANECRSKNKERA 295
>At3g25450 hypothetical protein
Length = 1343
Score = 642 bits (1656), Expect = 0.0
Identities = 373/1119 (33%), Positives = 618/1119 (54%), Gaps = 54/1119 (4%)
Query: 576 QAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVHQ--NLIRPESKIPKQKDQKNKAAT 633
Q K+ ++ E + + + + + +I +S + + LIR + + K++D ++A +
Sbjct: 206 QGKLMTEVEEEVVDDLEEEEEEVINKEIKAKSHVIDRLLKLIRLQEQKEKEEDDTHEAES 265
Query: 634 ASDKTIPKGVKPEVLNDQKPLSIHPKVCIRAREKQRSWYLDSGCSRHMTGEKALFLTLTM 693
+ LN++ + CI +WYLD+G S HMTG +A F L
Sbjct: 266 LMMHEVV------YLNEKNIRPTELESCIN-----NAWYLDNGASNHMTGNRAWFCKLDE 314
Query: 694 KDGGEVKFGGNQTGKIIGTGTI-----GNSSISINNVWLVDGLKHNLLSISQFCDNGYDV 748
G+V+FG + I G G+I G + +V+ + LK N+LS+ Q ++G D+
Sbjct: 315 MITGKVRFGDDSCINIKGKGSIPFISKGGERKILFDVYYIPDLKSNILSLGQATESGCDI 374
Query: 749 MFSKTNCTLVNKNDKSITFKGKRVEN-VYKINFSDLADQKVVCLLSMNDKKWVWHKRLGH 807
+ TL ++ + ++ K +R N +YK++ ++ + K + L + N+ +WH RLGH
Sbjct: 375 RMREDYLTLHDR-EGNLLIKAQRSRNRLYKVSL-EVENSKCLQLTTTNEST-IWHARLGH 431
Query: 808 ANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSTFKSKDIVSTSRPLELLHID 867
++ I + K +LV G+ + CG+C GK + +F ++ LEL+H D
Sbjct: 432 ISFETIKAMIKKELVIGISSSVPQEKETCGSCLFGKQARHSFPKATSYRAAQVLELIHGD 491
Query: 868 LFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKV 927
L GP++ ++ +Y V++DD+SR+ W +K K A F F ++ E I
Sbjct: 492 LCGPISPSTAAKKRYVFVLIDDHSRYMWSILLKEKSEAFGKFKEFKALVEQECGAIIKTF 551
Query: 928 RSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAK 987
R+D GGEF + F+ FC K GI ++P TPQQNGVVER+NRTL M R+++ N+
Sbjct: 552 RTDRGGEFLSHEFQEFCAKEGINRHLTAPYTPQQNGVVERRNRTLLGMTRSILKHMNMPN 611
Query: 988 HFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKF 1047
+ W EAV S Y+ NR+ R + +T YE+FK ++PN+ + FGC Y LKK
Sbjct: 612 YLWGEAVRHSTYLINRVGTRSLSNQTPYEVFKHKKPNVEHLRVFGCVSYAKVEVPNLKKL 671
Query: 1048 DAKAQRGIFLGYSERSKAYRVYNSETHCVEESIHVKFDDREPG--NKTPEQSESNAGT-T 1104
D +++ ++LG SKAYR+ + + S V FD+ ++ +++ +GT T
Sbjct: 672 DDRSRMLVYLGTEPGSKAYRLLDPTKRRIFVSRDVVFDENRSWMWQESSSETDKESGTFT 731
Query: 1105 DSEDASESDQPSDSEKHSEVESRPEAEITPEAESN-SEAETSPVEQNENASEDVQDNTQQ 1163
+ ++ ++++ +E E EAEI E E+ EAET +Q++ + V+ + +Q
Sbjct: 732 ITLSEFGNNGVTENDISTEPEETEEAEINGEDENIIEEAETEEHDQSQEEPQPVRRSQRQ 791
Query: 1164 VIQPKFKHK-----SSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSD 1218
VI+P + E L++ D EP +EA
Sbjct: 792 VIRPNYLKDYVLCAEIEAEHLLLAVND----------------------EPWDFKEANKS 829
Query: 1219 DGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNEKGEVTRNKARLVAQGY 1278
W A +EE+ ++N W L+ P IG KWVF+ K N G + + KARLVA+GY
Sbjct: 830 KEWRDACKEEIQSIEKNRTWSLVDLPVGSKAIGVKWVFKLKHNSDGSINKYKARLVAKGY 889
Query: 1279 SQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPG 1338
Q+ G+D+ E FAPVAR+E +RL+++ A ++G ++ +DVK+AFL+G + E+VYV QP G
Sbjct: 890 VQRHGVDFEEVFAPVARIETVRLIIALAASNGWEIHHLDVKTAFLHGELREDVYVSQPEG 949
Query: 1339 FEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFGKTLKKDILI 1398
F + + + VYKL K+LYGL+QAPRAW +L+ L + FE+ + +L+ K ++IL+
Sbjct: 950 FTNKESKEKVYKLHKALYGLRQAPRAWNTKLNEILKELKFEKCHKEPSLYRKQEGENILV 1009
Query: 1399 VQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYT 1458
V +YVDD++ +N + F K M +FEMS +G+L ++LGI++ QSK+G+ + Q +Y
Sbjct: 1010 VAVYVDDLLVTGSNLDIILNFKKGMVGKFEMSDLGKLTYYLGIEVLQSKDGITLKQERYA 1069
Query: 1459 KELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSV 1518
K++L++ + C +NTPM + LSK +D+ YR IG L YL +RPD+ ++V
Sbjct: 1070 KKILEEAGMSKCNTVNTPMIASLELSKAQDEKRIDETDYRRNIGCLRYLLHTRPDLSYNV 1129
Query: 1519 CLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKS 1578
+ +R+ +PRESH A+K+I RYL+GTT+ GL ++K + LIG+ D+ + D + KS
Sbjct: 1130 GILSRYLQEPRESHGAALKQILRYLQGTTSHGLYFKKGENAGLIGYSDSSHNVDLDDGKS 1189
Query: 1579 TSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQL-EDYQINANSI 1637
T G+ +L + I+W S++Q + +S+ EAE+++A Q +W++ L E +
Sbjct: 1190 TGGHIFYLNDCPITWCSQKQQVVTLSSCEAEFMAATEAAKQAIWLQELLAEVIGTECEKV 1249
Query: 1638 PIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKG 1676
I DN +AI L+KNP+ H R+KHI ++HFIR+ V+ G
Sbjct: 1250 TIRVDNKSAIALTKNPVFHGRSKHIHRRYHFIRECVENG 1288
Score = 70.1 bits (170), Expect = 1e-11
Identities = 44/174 (25%), Positives = 89/174 (50%), Gaps = 6/174 (3%)
Query: 94 KKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELF 153
+K+ R ++ SIP + +++ + T+ A++ ++ + G+++VKEA+ L+ +++
Sbjct: 58 EKNDMARALLFQSIPESLILQVGKQKTSSAVWEAIKSRNLGAERVKEARLQTLMAEFDKL 117
Query: 154 RMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLP-SRWRPKVTAIEEAKDL 212
+MKD E+I++ R + + L + S V K L+SLP ++ V A+E+ DL
Sbjct: 118 KMKDSETIDDYVGRISEITTKAAALGEDIEESKIVKKFLKSLPRKKYIHIVAALEQVLDL 177
Query: 213 NTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKTSKSSKAYKASESEEE 266
T + ED+ +K +E + + + S + + K T + E EEE
Sbjct: 178 KTTTFEDIAGRIKTYEDRVWDDDDSHEDQ-----GKLMTEVEEEVVDDLEEEEE 226
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 639 bits (1649), Expect = 0.0
Identities = 351/1026 (34%), Positives = 565/1026 (54%), Gaps = 66/1026 (6%)
Query: 666 EKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSI 720
E+++ W+LDSGCS HM G + FL L V+ G ++ + G G + G +
Sbjct: 253 EEKQIWFLDSGCSNHMCGTREWFLELDSGFKQNVRLGDDRRMAVEGKGKLRLEVDGRIQV 312
Query: 721 SINNVWLVDGLKHNLLSISQFCDNGYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKINF 780
I++V+ V GLK+NL S+ Q G + C + +K +K + +N + F
Sbjct: 313 -ISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMVMHSTMTKNRMFVVF 371
Query: 781 SDLADQKVV----CLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDY-HSDAL 835
+ + K CL + +WHKR GH N + + +++ ++VKGLP D +A+
Sbjct: 372 AAVKKSKETEETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAV 431
Query: 836 CGACQKGKIVKSTFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTW 895
C C KGK ++ + + +++ L+L+H D+ GP+N AS G +Y L +DD+SR W
Sbjct: 432 CDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCW 491
Query: 896 VKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSS 955
+ K + F F +++ E K++ +RSD GGE+ + F+ +C++ GI + ++
Sbjct: 492 TYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTA 551
Query: 956 PRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAY 1015
TPQQNGV ERKNR++ M R M+ E ++ + FW EAV + YI NR + + + T
Sbjct: 552 AYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPE 611
Query: 1016 ELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHC 1075
E + +P++ + FG Y L K D K+ + + G S+ SKAYR+Y+ T
Sbjct: 612 EKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGK 671
Query: 1076 VEESIHVKFDDREPGNKTPEQSESNAGTTDSEDASESDQPSDSEKHSEVESRPEAEITPE 1135
+ S V+FD+ E G + ++S D+ D + + H+ + + E E
Sbjct: 672 ILISRDVQFDE-ERGWEWEDKSLEEELVWDNSDHEPAGEEGPEINHNGQQDQEETE---- 726
Query: 1136 AESNSEAETSPVEQNENASEDVQDNTQQVIQPKFKHKSSHP--EELIIGSKDSPRRTRSH 1193
E+ E +E V N V + + ++ ++G+ R +
Sbjct: 727 ------------EEEETVAETVHQNLPAVGTGGVRQRQQPVWMKDYVVGNA---RVLITQ 771
Query: 1194 FRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTK 1253
++E L + +P EEA + W AM+ E+ + N+ W+L+ P + +IG K
Sbjct: 772 DEEDEVLALFIGPDDPVCFEEAAQLEVWRKAMEAEITSIEENNTWELVELPEEAKVIGLK 831
Query: 1254 WVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIIL 1313
W+F+ K NEKGEV + KARLVA+GY Q+ G+D+ E FAPVA+ + IRL+L A G +
Sbjct: 832 WIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKGWSV 891
Query: 1314 YQMDVKSAFLNGVIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFL 1373
+Q+DVKSAFL+G ++E+V+V+QP GFE + VYKLKK+LYGLKQAPRAWY R+ F
Sbjct: 892 FQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIEEFF 951
Query: 1374 IKNDFERGQVDTTLFGKTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMG 1433
K FE+ + TLF K + D L+V +YVDD+I+ ++ + + F M +EF M+ +G
Sbjct: 952 GKEGFEKCYCEHTLFVKKERSDFLVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDLG 1011
Query: 1434 ELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVD 1493
++K+FLG+++ Q + G++++Q KY E++KK+ +E C + P+ P L+K G V
Sbjct: 1012 KMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQKLTK--AGAV-- 1067
Query: 1494 QKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLY 1553
+R+ P E HL AVKRI RY++GT +LG+ Y
Sbjct: 1068 ----------------------------SRYMESPNEQHLLAVKRILRYVQGTLDLGIQY 1099
Query: 1554 RKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISA 1613
+ +L+GF D+DYAGD +RKSTSG LG I+WASK+Q + +ST EAE++SA
Sbjct: 1100 ERGGATELVGFVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSA 1159
Query: 1614 ASCCTQLLWMKHQLEDYQI-NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDY 1672
+ Q +W+++ LE+ ++CDN++ I LSKNP+LH R+KHI +++HF+R+
Sbjct: 1160 SYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLREL 1219
Query: 1673 VQKGIL 1678
V++G +
Sbjct: 1220 VKEGTI 1225
Score = 95.1 bits (235), Expect = 3e-19
Identities = 68/243 (27%), Positives = 114/243 (45%), Gaps = 38/243 (15%)
Query: 95 KHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFR 154
K HK++ + ASI +T + K T+K ++ S+ ++G+ +V+ A+ L +E+
Sbjct: 24 KDHKVKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEVLE 83
Query: 155 MKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNT 214
MK E+I +SR + + ++ L + S V KILR+L ++ V AIEE+ ++
Sbjct: 84 MKIGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNIKE 143
Query: 215 LSVEDLVSSLKVHEMSLNEHESSK---KSKSIALPSKGKTSKSSKAYKASESEEESPDRD 271
L+V+ L SSL VHE +L+ H+ + K+++ P G+ SP R
Sbjct: 144 LTVDGLQSSLMVHEQNLSRHDVEERVLKAETQWRPDGGR------------GRGGSPSR- 190
Query: 272 SDEDQSVKMAMLSNKLEYLARKQKKFLSKRGGYKNSKKEDQKGCFNCKKPGHFIADCPDL 331
R + + + GY N D CF C K GH+ A+CP
Sbjct: 191 -------------------GRGRGGYQGRGRGYVN---RDTVECFKCHKMGHYKAECPSW 228
Query: 332 QKE 334
+KE
Sbjct: 229 EKE 231
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 595 bits (1533), Expect = e-170
Identities = 344/951 (36%), Positives = 501/951 (52%), Gaps = 84/951 (8%)
Query: 618 ESKIPKQKDQKNKAATASDKTIPKGVKPEVLNDQKPLSIHPKVCIRAREKQRSWYLDSGC 677
E K P K K KA +K ++ E D ++ + K +E+ WYLDSG
Sbjct: 293 ECKAPSNKKFKEKANYVEEK-----IQEE---DMLLMASYKK---DEQEENHKWYLDSGA 341
Query: 678 SRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSISINNVWLVDGLK 732
S HM G K++F L G V G ++ G G I I+NV+ + +K
Sbjct: 342 SNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMK 401
Query: 733 HNLLSISQFCDNGYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKINF-SDLADQKVVCL 791
N+LS+ Q + GYD+ N ++ +K IT ++ +N +D+A +C
Sbjct: 402 TNILSLGQLLEKGYDIRLKDNNLSIRDKESNLITKVPMSKNRMFVLNIRNDIAQCLKMCY 461
Query: 792 LSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSTFKS 851
++ W+WH R GH N+ + +S+ ++V+GLP I+ H + +C C G K +F
Sbjct: 462 ---KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN-HPNQVCEGCLLGNQFKMSFPK 517
Query: 852 KDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSS 911
+ +PLEL+H D+ GP+ SL S Y L+ +DD+SR TWV F+K K E+F
Sbjct: 518 ESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKK 577
Query: 912 FCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRT 971
F ++ E L I +RSD GGEF ++ F +CE +GI + + PR+PQQNGV ERKNRT
Sbjct: 578 FKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRT 637
Query: 972 LQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQF 1031
+ EMAR+M+ L K WAEAV + Y+ NR + + KT E + GR+P +S+ F
Sbjct: 638 ILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVF 697
Query: 1032 GCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVEESIHVKFDDREPGN 1091
G + + K D K+++ IF+GY SK Y++YN +T S ++ FD+ +
Sbjct: 698 GSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWD 757
Query: 1092 KTPEQSESNAGTTDSEDASESDQPSDSEKHSEVESRPEAEITPEAESNSEAETSPVEQNE 1151
+ + N ED E P+ E SE + P T S +E +P ++
Sbjct: 758 WNSNEEDYNFFPHFEEDKPE---PTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSI 814
Query: 1152 NASEDVQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKT 1211
+V +N + + +L L + EP
Sbjct: 815 QELYEVTENQENL----------------------------------TLFCLFAECEPMD 840
Query: 1212 VEEALSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNEKGEVTRNKA 1271
+EA+ W AM EE+ Q+ND W+L P IG KWV++ K N KGEV R KA
Sbjct: 841 FQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKA 900
Query: 1272 RLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEV 1331
RLVA+GYSQ+ GIDY E FAPVARLE +RL++S A + ++QMDVKSAFLNG +EEEV
Sbjct: 901 RLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEV 960
Query: 1332 YVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFGKT 1391
Y++QP G+ D V +LKK LYGLKQAPRAW R+ + + DF + + L+ K
Sbjct: 961 YIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKI 1020
Query: 1392 LKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVY 1451
K+DILI +YVDD+IF N S+ +EF K M EFEM+ +G + ++LGI++ Q G++
Sbjct: 1021 QKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIF 1080
Query: 1452 VHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASR 1511
+ Q Y KE+LKKFK++D ++GSL YLT +R
Sbjct: 1081 ITQEGYAKEVLKKFKMDDSN--------------------------PSLVGSLRYLTCTR 1114
Query: 1512 PDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLI 1562
PDIL++V + +R+ P +H A KRI RY+KGT N GL Y + DYKL+
Sbjct: 1115 PDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLV 1165
Score = 78.6 bits (192), Expect = 3e-14
Identities = 74/332 (22%), Positives = 148/332 (44%), Gaps = 30/332 (9%)
Query: 45 WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIV 104
W M + + D +W+I+E G ++ + EG+ + + K+ K +I
Sbjct: 21 WSLRMKAILGAHD--VWEIVEKGF--IEPENEGSL--SQTQKDGLRDSRKRDKKALCLIY 74
Query: 105 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEM 164
+ + K+ + ++AK + L +++G+ +VK+ + L ++E +MK+ E + +
Sbjct: 75 QGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDY 134
Query: 165 YSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 224
+SR T+ + L+ + + K+LRSL ++ VT IEE KDL +++E L+ SL
Sbjct: 135 FSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSL 194
Query: 225 KVHEMSLNEHESSKKSKSIALPSKGKTSKSSKAYKASESEEESPDRDSDEDQSVKMAMLS 284
+ +E E KK + I + E+ + R + +
Sbjct: 195 QAYE------EKKKKKEDIV------EQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYG 242
Query: 285 NKLEYLARK----QKKFLSKRGGYKNSKK----EDQKGCFNCKKPGHFIADCPDLQKEKS 336
N + + Q+ S RG K K + C+NC K GH+ ++C +K
Sbjct: 243 NGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKF 302
Query: 337 KSKSKKSSFSSSKFRKQIKKSLMATWEDLDSE 368
K +K+++ K +++ LMA+++ + E
Sbjct: 303 K---EKANYVEEKIQEE-DMLLMASYKKDEQE 330
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 586 bits (1510), Expect = e-167
Identities = 362/1144 (31%), Positives = 592/1144 (51%), Gaps = 65/1144 (5%)
Query: 548 KDGLKSTFVPEGTNAVTAVQSKPETSGSQAKITSKPENLKIKVMTKS---DPKSQKIKIL 604
K G F P+G ++ P+ A++T P+ + ++ T + P + I
Sbjct: 329 KHGFPPGFTPKGKSS----DKPPKPQAVAAQVTLSPDKMTGQLETLAGNFSPDQIQNLIA 384
Query: 605 KRSEPVHQNLIRPESKIPKQKDQKNKAATASDKTIPKGVKPEVLNDQKPLSIHPKVCIRA 664
S + ++ P++ + + A++S P G+ + + I
Sbjct: 385 LFSSQLQPQIVSPQTASSQHE------ASSSQSVAPSGI---LFSPSTYCFIGILAVSHN 435
Query: 665 REKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTG---KIIGTGTIG-NSSI 720
+W +DSG + H++ ++ LF TL D V F TG +I G GT+ N I
Sbjct: 436 SLSSDTWVIDSGATHHVSHDRKLFQTL---DTSIVSFVNLPTGPNVRISGVGTVLINKDI 492
Query: 721 SINNVWLVDGLKHNLLSISQFC-DNGYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKIN 779
+ NV + + NL+SIS D G V+F + C + + +GKR+ N+Y ++
Sbjct: 493 ILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVLD 552
Query: 780 FSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGAC 839
A + + ++ D VWHKRLGH ++ S++ L V G A C C
Sbjct: 553 TQSPA----ISVNAVVDVS-VWHKRLGHPSF---SRLDSLSEVLGTTRHKNKKSAYCHVC 604
Query: 840 QKGKIVKSTFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFI 899
K K +F S + + S ELLHID++GP + ++ G KY L IVDD+SR TW+ +
Sbjct: 605 HLAKQKKLSFPSANNICNST-FELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLL 663
Query: 900 KSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTP 959
KSK VF +F ++++ + ++ VRSD+ E F F + GI+ S P TP
Sbjct: 664 KSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKELA---FTEFYKAKGIVSFHSCPETP 720
Query: 960 QQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFK 1019
+QN VVERK++ + +AR ++ ++N++ +W + V T+ ++ NR + KT +E+
Sbjct: 721 EQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLT 780
Query: 1020 GRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVEES 1079
G+ P+ S FGC CY + KF +++ +FLGY K Y++ + E++ V S
Sbjct: 781 GKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVHIS 840
Query: 1080 IHVKFDDREPGNKTPEQSESNAGTTDSEDASESDQPSDSEKHSEVESRPEAEITPEAESN 1139
+V+F + P S + TT S+ + D S +S P +I+P + +
Sbjct: 841 RNVEFHEE----LFPLASSQQSATTASDVFTPMDPLSSG--NSITSHLPSPQISPSTQIS 894
Query: 1140 SEAETS-PVEQNENASEDVQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEE 1198
T P + V + I + P ++
Sbjct: 895 KRRITKFPAHLQDYHCYFVNKDDSHPISSSLSYSQISPSHMLY----------------- 937
Query: 1199 SLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRN 1258
+ + I P++ EA W A+ +E+ +R D W++ P K +G KWVF
Sbjct: 938 -INNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTV 996
Query: 1259 KLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDV 1318
K + G + R KAR+VA+GY+Q+EG+DYTETF+PVA++ ++LLL + + L Q+D+
Sbjct: 997 KFHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDI 1056
Query: 1319 KSAFLNGVIEEEVYVKQPPGFEDIKH----PDHVYKLKKSLYGLKQAPRAWYDRLSNFLI 1374
+AFLNG +EE +Y+K P G+ DIK P+ V +LKKS+YGLKQA R W+ + SN L+
Sbjct: 1057 SNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLL 1116
Query: 1375 KNDFERGQVDTTLFGKTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGE 1434
FE+ D TLF + + + +++ +YVDDI+ ST + ++ ++ F++ +G
Sbjct: 1117 ALGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGP 1176
Query: 1435 LKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQ 1494
LK+FLG+++ ++ EG+ + Q KY ELL + DCK + PM P LSK D + D+
Sbjct: 1177 LKYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDK 1236
Query: 1495 KLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYR 1554
++YR ++G L+YLT +RPDI F+V +F S PR +HL AV ++ +Y+KGT GL Y
Sbjct: 1237 EMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYS 1296
Query: 1555 KSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAA 1614
D L G+ DAD+ R+ST+G F+G +LISW SK+Q T++ S+AEAEY + A
Sbjct: 1297 AEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALA 1356
Query: 1615 SCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQ 1674
++ W+ L ++++ +Y D+TAA+ ++ NP+ H R KHIEI H +R+ +
Sbjct: 1357 LASCEMAWLSTLLLALRVHSGVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLD 1416
Query: 1675 KGIL 1678
G L
Sbjct: 1417 NGQL 1420
>At2g05390 putative retroelement pol polyprotein
Length = 1307
Score = 578 bits (1491), Expect = e-165
Identities = 341/1017 (33%), Positives = 552/1017 (53%), Gaps = 52/1017 (5%)
Query: 670 SWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSISINN 724
SWYLD+G S HMTG F L G+V+FG + I G G+I G ++ +
Sbjct: 279 SWYLDNGASNHMTGNLQWFSKLNEMITGKVRFGDDSRIDIKGKGSIVLITKGGIRKTLTD 338
Query: 725 VWLVDGLKHNLLSISQFCDNGYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKINFSDLA 784
V+ + LK N++S+ Q + G DV TL ++ + + +YK+ DL
Sbjct: 339 VYFIPDLKSNIISLGQATEAGCDVRMKDDQLTLHDREGCLLLRATRSRNRLYKV---DLN 395
Query: 785 DQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKI 844
+ V CL +L A + + +LV G+ NI + CG+C GK
Sbjct: 396 VENVKCL------------QLEAAT------MVRKELVIGISNIPKEKET-CGSCLLGKQ 436
Query: 845 VKSTFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDY 904
+ F S+ LEL+H DL GP+ ++ +Y LV++DD++R+ W +K K
Sbjct: 437 ARQPFPKATTYRASQVLELVHGDLCGPITQSTTAKKRYILVLIDDHTRYMWSMLLKEKSE 496
Query: 905 ACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGV 964
A E F F T+++ E +KI R+D GGEF ++ F+ FC K GI ++P TPQQNGV
Sbjct: 497 AFEKFRDFKTKVEQESGVKIKTFRTDKGGEFVSQEFQDFCAKEGINRHLTAPYTPQQNGV 556
Query: 965 VERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPN 1024
VER+NRTL M R+++ + + W EAV S YI NR+ R + +T YE+FK R+PN
Sbjct: 557 VERRNRTLLGMTRSILKHMKMPNYLWGEAVRHSTYIINRVGTRSLQNQTPYEVFKQRKPN 616
Query: 1025 ISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVEESIHVKF 1084
+ + FGC Y +L+K D +++ ++LG SKAYR+ + + + +
Sbjct: 617 VEHLRVFGCIGYAKIEGPHLRKLDDRSKMLVYLGTEPGSKAYRLLDPTNRKIIKWNNSDS 676
Query: 1085 DDRE-PGNKTPEQSE-SNAGTTDSEDASESDQPSDSEKHSEVESRPEAEITPEAESNSEA 1142
+ R+ G + E N G +S+D +SE E E E E E
Sbjct: 677 ETRDISGTFSLTLGEFGNNGIQESDDIETEKNGEESENSHEEEGENEHN---EQEQIDAE 733
Query: 1143 ETSPVEQNENASEDVQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIG 1202
ET P + ++ +T+QV +P + ++ ++ + E+ L+
Sbjct: 734 ETQP--SHATPLPTLRRSTRQVGKPNYL------DDYVL---------MAEIEGEQVLLA 776
Query: 1203 LLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNE 1262
+ EP +EA W A +EE+ ++N W LI P ++ +IG KWVF+ K N
Sbjct: 777 IND--EPWDFKEANKLKEWRDACKEEILSIEKNKTWSLIDLPVRRKVIGLKWVFKIKRNS 834
Query: 1263 KGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAF 1322
G + + KARLVA+GY Q+ GIDY E FA VAR+E IR++++ A ++G ++ +DVK+AF
Sbjct: 835 DGSINKYKARLVAKGYVQRHGIDYDEVFAHVARIETIRVIIALAASNGWEVHHLDVKTAF 894
Query: 1323 LNGVIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQ 1382
L+G + E+VYV QP GF + + VYKL K+LYGLKQAPRAW +L+ L + +F +
Sbjct: 895 LHGELREDVYVTQPEGFTNKDNEGKVYKLHKALYGLKQAPRAWNTKLNKILQELNFVKCS 954
Query: 1383 VDTTLFGKTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQ 1442
+ +++ + +K +LIV IYVDD++ ++ L F K M +FEMS +G+L ++LGI+
Sbjct: 955 KEPSVYRRQEEKKLLIVAIYVDDLLVTGSSLDLILCFKKDMAGKFEMSDLGQLTYYLGIE 1014
Query: 1443 INQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIG 1502
+ K G+ + Q +Y +++++ + +C + PM L K + ++ YR MIG
Sbjct: 1015 VLHRKNGIILRQERYAMKIIEEAGMSNCNPVLIPMAAGLELCKAQEEKCITERDYRRMIG 1074
Query: 1503 SLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLI 1562
L Y+ +RPD+ + V + +R+ PRESH A+K++ RYLKGT + GL ++ L+
Sbjct: 1075 CLRYIVHTRPDLSYCVGVLSRYLQQPRESHGNALKQVLRYLKGTMSHGLYLKRGFKSGLV 1134
Query: 1563 GFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLW 1622
G+ D+ ++ D + KST+G+ +L + I+W S++Q +A+S+ EAE+++A Q +W
Sbjct: 1135 GYSDSSHSADLDDGKSTAGHIFYLHQCPITWCSQKQQVVALSSCEAEFMAATEAAKQAIW 1194
Query: 1623 MKHQL-EDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGIL 1678
++ E + + I DN +AI L+KN + H R+KHI ++HFIR+ V+ ++
Sbjct: 1195 LQDLFAEVCGTTSEKVMIRVDNKSAIALTKNLVFHGRSKHIHRRYHFIRECVENNLV 1251
Score = 89.0 bits (219), Expect = 2e-17
Identities = 64/288 (22%), Positives = 126/288 (43%), Gaps = 54/288 (18%)
Query: 59 ELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDK 118
++W+ ++ G DD++ K+ R ++ S+P + +++
Sbjct: 9 KVWETIDPGSDDME----------------------KNDMARALLFQSVPESTILQVGKH 46
Query: 119 STAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEMYSRFQTLVSGLQIL 178
T+KAM+ ++ G+++VKEAK L+ +++ MKD+E+I+E R + + + L
Sbjct: 47 KTSKAMWEAIKTRNLGAERVKEAKLQTLMAEFDRLNMKDNETIDEFVGRISEISTKSESL 106
Query: 179 KKSYVASDHVSKILRSLP-SRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHESS 237
+ S V K L+SLP ++ + A+E+ DLNT ED+V +K +E + + + S
Sbjct: 107 GEEIEESKIVKKFLKSLPRKKYIHIIAALEQILDLNTTGFEDIVGRMKTYEDRVCDEDDS 166
Query: 238 KKSKSIALPSKGKTSKSSKAYKASESEEESPDRDSDEDQSVKMAMLSNKLEYLARKQKKF 297
+ + K + S +Y R S
Sbjct: 167 PEEQ-----GKLMYANSESSYDTRGGRGRGRGRSSGRG---------------------- 199
Query: 298 LSKRGGYKNSKKEDQKG-CFNCKKPGHFIADCPDLQKEKSKSKSKKSS 344
RGGY +++ K C+ C K GH+ ++C D + K++ ++ +
Sbjct: 200 ---RGGYGYQQRDKSKVICYRCDKTGHYASECLDRLLKLIKAQEQQQN 244
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 567 bits (1461), Expect = e-161
Identities = 347/1033 (33%), Positives = 548/1033 (52%), Gaps = 47/1033 (4%)
Query: 669 RSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKII---GTGTI--GNSSISIN 723
+ W+ DS + H+T + T +G + G+ T I G+ TI N I +N
Sbjct: 320 KEWHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSSNGKIPLN 379
Query: 724 NVWLVDGLKHNLLSISQFCDN-GYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKINFSD 782
V +V ++ +LLS+S+ CD+ V F +++ + + G R +Y
Sbjct: 380 EVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGPRRNGLYV----- 434
Query: 783 LADQKVVCLLSMND---KKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGAC 839
L +Q+ V L S + VWH RLGHAN + + LQ K + + +C C
Sbjct: 435 LENQEFVALYSNRQCAATEEVWHHRLGHANSKALQH---LQNSKAIQINKSRTSPVCEPC 491
Query: 840 QKGKIVKSTFKSKDIVSTSR---PLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWV 896
Q GK + F ++S SR PL+ +H DL+GP S G KY + VDDYSR++W
Sbjct: 492 QMGKSSRLPF----LISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWF 547
Query: 897 KFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSP 956
+ +K VF SF ++++ KI +SD GGEF + + +HGI H S P
Sbjct: 548 YPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCP 607
Query: 957 RTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYE 1016
TPQQNG+ ERK+R L E+ +M+ ++ + FW E+ T+ YI NR+ + + YE
Sbjct: 608 YTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKNLSPYE 667
Query: 1017 LFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCV 1076
G +P+ S FG CY KFD ++ + +FLGY+ + K YR + T V
Sbjct: 668 ALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGYRCFYPPTGKV 727
Query: 1077 EESIHVKFDDREPGNKTPEQSESNAGTTDSEDASESDQPSDSEKHS---EVESRPEAEIT 1133
S +V F++ E K QS +T A + ++ S+ + ++ S+P T
Sbjct: 728 YISRNVIFNESELPFKEKYQSLVPQYSTPLLQAWQHNKISEISVPAAPVQLFSKPIDLNT 787
Query: 1134 PEAESNSEAETSP--VEQNENASEDVQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTR 1191
+E T P NE + E+V +++ + +E +I S R++
Sbjct: 788 YAGSQVTEQLTDPEPTSNNEGSDEEVNPVAEEI---------AANQEQVINSHAMTTRSK 838
Query: 1192 SHFRQEESLIGLLS----IIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLIPKPFQK 1247
+ ++ + L++ EPKT+ A+ GW A+ EE+N+ W L+P
Sbjct: 839 AGIQKPNTRYALITSRMNTAEPKTLASAMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDM 898
Query: 1248 NIIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAI 1307
NI+ +KWVF+ KL+ G + + KARLVA+G+ Q+EG+DY ETF+PV R IRL+L +
Sbjct: 899 NILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVST 958
Query: 1308 NHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYD 1367
+ G + Q+DV +AFL+G ++E V++ QP GF D + P HV +L K++YGLKQAPRAW+D
Sbjct: 959 SKGWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKPTHVCRLTKAIYGLKQAPRAWFD 1018
Query: 1368 RLSNFLIKNDFERGQVDTTLFGKTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEF 1427
SNFL+ F + D +LF IL + +YVDDI+ ++ SL ++ + +++ F
Sbjct: 1019 TFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRF 1078
Query: 1428 EMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKED 1487
M +G ++FLGIQI G+++HQT Y ++L++ + DC M TP+ L +
Sbjct: 1079 SMKDLGPPRYFLGIQIEDYANGLFLHQTAYATDILQQAGMSDCNPMPTPLPQ--QLDNLN 1136
Query: 1488 TGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTT 1547
+ + +R + G L YLT +RPDI F+V + P S +KRI RY+KGT
Sbjct: 1137 SELFAEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTI 1196
Query: 1548 NLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAE 1607
+GL +++ L + D+D+AG + R+ST+G C LG NLISW++KRQ T++ S+ E
Sbjct: 1197 GMGLPIKRNSTLTLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTE 1256
Query: 1608 AEYISAASCCTQLLWMKHQLEDYQINANSIP--IYCDNTAAICLSKNPILHSRAKHIEIK 1665
AEY + ++ W+ L D I +P +YCDN +A+ LS NP LH+R+KH +
Sbjct: 1257 AEYRALTYAAREITWISFLLRDLGI-PQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTD 1315
Query: 1666 HHFIRDYVQKGIL 1678
+H+IR+ V G++
Sbjct: 1316 YHYIREQVALGLI 1328
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 562 bits (1448), Expect = e-160
Identities = 334/1016 (32%), Positives = 540/1016 (52%), Gaps = 39/1016 (3%)
Query: 670 SWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIG-NSSISINNVWLV 728
+W +DSG + H++ +++LF +L V T KI G GT+ N I + NV +
Sbjct: 430 TWVIDSGATHHVSHDRSLFSSLDTSVLSAVNLPTGPTVKISGVGTLKLNDDILLKNVLFI 489
Query: 729 DGLKHNLLSISQFCDN-GYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKINFSDLADQK 787
+ NL+SIS D+ G V+F K +C + + + +G+RV N+Y + D+ DQ
Sbjct: 490 PEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLL---DVGDQS 546
Query: 788 VVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKS 847
+ ++ +WH+RLGHA+ + + IS G C C K K
Sbjct: 547 ISVNAVVDIS--MWHRRLGHASLQRLDAISDSL---GTTRHKNKGSDFCHVCHLAKQRKL 601
Query: 848 TFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACE 907
+F + + V +LLHID++GP + ++ G KY L IVDD+SR TW+ +K+K
Sbjct: 602 SFPTSNKVC-KEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLT 660
Query: 908 VFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVER 967
VF +F Q++++ ++K+ VRSD+ E + F F + GI+ S P TP+QN VVER
Sbjct: 661 VFPAFIQQVENQYKVKVKAVRSDNAPELK---FTSFYAEKGIVSFHSCPETPEQNSVVER 717
Query: 968 KNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISY 1027
K++ + +AR ++ ++ + W + V T+ ++ NR + ++ KT YE+ G P
Sbjct: 718 KHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVYEQ 777
Query: 1028 FHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVEESIHVKFDDR 1087
FGC CY + KF +++ +FLGY K Y++ + E++ V S +V+F +
Sbjct: 778 LRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFHEE 837
Query: 1088 E-PGNKTPEQSESNAGTTDSEDASESDQPSDSEKHSEVESRPEAEITPEAESNSEAETSP 1146
P K P S T S S SD+ HS + P S+ P
Sbjct: 838 VFPLAKNPGSESSLKLFTPMVPVS-SGIISDTT-HSPSSLPSQISDLPPQISSQRVRKPP 895
Query: 1147 VEQNENASEDVQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSI 1206
N+ +Q + + I + P + + + I
Sbjct: 896 AHLNDYHCNTMQSDHKYPISSTISYSKISPSHMCY------------------INNITKI 937
Query: 1207 IEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNEKGEV 1266
P EA W A+ E+ ++ + W++ P K +G KWVF K G +
Sbjct: 938 PIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNL 997
Query: 1267 TRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGV 1326
R KARLVA+GY+Q+EG+DYT+TF+PVA++ I+LLL + + L Q+DV +AFLNG
Sbjct: 998 ERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGE 1057
Query: 1327 IEEEVYVKQPPGFEDIKH----PDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQ 1382
+EEE+++K P G+ + K + V +LK+S+YGLKQA R W+ + S+ L+ F++
Sbjct: 1058 LEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTH 1117
Query: 1383 VDTTLFGKTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQ 1442
D TLF K + +IV +YVDDI+ ST+ + + ++ + F++ +G+LK+FLG++
Sbjct: 1118 GDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLE 1177
Query: 1443 INQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIG 1502
+ ++ G+ + Q KY ELL+ + CK ++ PM P + K+D + D + YR ++G
Sbjct: 1178 VARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVG 1237
Query: 1503 SLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLI 1562
L+YLT +RPDI F+V +F S PR +HLTA R+ +Y+KGT GL Y S D L
Sbjct: 1238 KLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLK 1297
Query: 1563 GFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLW 1622
GF D+D+A + R+ST+ F+G++LISW SK+Q T++ S+AEAEY + A +++W
Sbjct: 1298 GFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVW 1357
Query: 1623 MKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGIL 1678
+ L Q + +Y D+TAAI ++ NP+ H R KHI++ H +R+ + G L
Sbjct: 1358 LFTLLVSLQASPPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGEL 1413
>At1g70010 hypothetical protein
Length = 1315
Score = 546 bits (1406), Expect = e-155
Identities = 341/993 (34%), Positives = 529/993 (52%), Gaps = 55/993 (5%)
Query: 709 IIGTGTIGNSSISINNVWLVDGLKHNLLSISQFCDN-GYDVMFSKTNCTLVNKNDKSITF 767
I G+ +G I +N+V + K NLLS+S + G + F +T+C L + + +
Sbjct: 313 ISGSVHLGRHLI-LNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVG 371
Query: 768 KGKRVENVYKINFSDLA----DQKV-VCLLSMNDKKWVWHKRLGHANWRLISKISKL-QL 821
GK+V N+Y ++ L+ D + V ++ +D +WHKRLGH + + + +S L
Sbjct: 372 MGKQVANLYIVDLDSLSHPGTDSSITVASVTSHD---LWHKRLGHPSVQKLQPMSSLLSF 428
Query: 822 VKGLPNIDYHSDALCGACQKGKIVKSTFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSK 881
K N D+H C C K F S + S SRP +L+HID +GP + + G +
Sbjct: 429 PKQKNNTDFH----CRVCHISKQKHLPFVSHNNKS-SRPFDLIHIDTWGPFSVQTHDGYR 483
Query: 882 YGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFE 941
Y L IVDDYSR TWV +++K V +F T ++++ E I VRSD+ E F
Sbjct: 484 YFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELN---FT 540
Query: 942 LFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQ 1001
F GI+ S P TPQQN VVERK++ + +AR++ ++++ +W + + T+ Y+
Sbjct: 541 QFYHSKGIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLI 600
Query: 1002 NRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSE 1061
NR+ + +K +E+ P + FGC CY + KF +A+ F+GY
Sbjct: 601 NRLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPS 660
Query: 1062 RSKAYRVYNSETHCVEESIHVKFDDRE---PGNKTPEQSES---NAGTTDSEDASESDQP 1115
K Y++ + ETH + S HV F + G+ ++ ++ + T SD
Sbjct: 661 GFKGYKLLDLETHSIIVSRHVVFHEELFPFLGSDLSQEEQNFFPDLNPTPPMQRQSSDHV 720
Query: 1116 SDSEKHSEVESRPEAEITPEAESNSEAETSPVEQNENASEDVQDNTQQVIQPKFKHK--S 1173
+ S+ S VE P A T N+ E S + A + +Q + H S
Sbjct: 721 NPSDSSSSVEILPSANPT-----NNVPEPSVQTSHRKAKKPAY------LQDYYCHSVVS 769
Query: 1174 SHPEELIIGSKDSPRRTRSHFRQEESLIGLLSII----EPKTVEEALSDDGWILAMQEEL 1229
S P E+ R+ S+ R + + L+ + EP EA W AM E
Sbjct: 770 STPHEI--------RKFLSYDRINDPYLTFLACLDKTKEPSNYTEAEKLQVWRDAMGAEF 821
Query: 1230 NQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTET 1289
+ + W++ P K IG +W+F+ K N G V R KARLVAQGY+Q+EGIDY ET
Sbjct: 822 DFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNET 881
Query: 1290 FAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFE----DIKHP 1345
F+PVA+L +++LLL A + L Q+D+ +AFLNG ++EE+Y++ P G+ D P
Sbjct: 882 FSPVAKLNSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPP 941
Query: 1346 DHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFGKTLKKDILIVQIYVDD 1405
+ V +LKKSLYGLKQA R WY + S+ L+ F + D T F K L V +Y+DD
Sbjct: 942 NAVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDD 1001
Query: 1406 IIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKF 1465
II S N + M+ F++ +GELK+FLG++I +S +G+++ Q KY +LL +
Sbjct: 1002 IIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLLDET 1061
Query: 1466 KLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQ 1525
CK + PM P+ + + G V+ YR +IG L+YL +RPDI F+V A+F
Sbjct: 1062 GQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFS 1121
Query: 1526 SDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQF 1585
PR++HL AV +I +Y+KGT GL Y + + +L + +ADY R R+STSG C F
Sbjct: 1122 MAPRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMF 1181
Query: 1586 LGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQIN-ANSIPIYCDNT 1644
LG++LI W S++Q ++ S+AEAEY S + +L+W+ + L++ Q+ + ++CDN
Sbjct: 1182 LGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLLFCDNE 1241
Query: 1645 AAICLSKNPILHSRAKHIEIKHHFIRDYVQKGI 1677
AAI ++ N + H R KHIE H +R+ + KG+
Sbjct: 1242 AAIHIANNHVFHERTKHIESDCHSVRERLLKGL 1274
>At1g37110
Length = 1356
Score = 539 bits (1389), Expect = e-153
Identities = 329/1039 (31%), Positives = 545/1039 (51%), Gaps = 62/1039 (5%)
Query: 671 WYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSISINNV 725
W LDSGC+ HMT + F++ K + G + + + G GTI G + + NV
Sbjct: 308 WILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTIKILENV 367
Query: 726 WLVDGLKHNLLSISQFCDNGYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKINFSDLAD 785
V L+ NL+S GY + N ++ +G +Y ++ S +
Sbjct: 368 KYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFKNNKTAL--RGSLSNGLYVLDGSTVMS 425
Query: 786 QKVVCLLSMNDKKW-VWHKRLGHANWRLISKISKLQLV--KGLPNIDYHSDALCGACQKG 842
+ +C + K +WH RLGH + + ++ L+ K + +++ C C G
Sbjct: 426 E--LCNAETDKVKTALWHSRLGHMSMNNLKVLAGKGLIDRKEINELEF-----CEHCVMG 478
Query: 843 KIVKSTFKSKDIVSTSRPLELLHIDLFGPVN-TASLYGSKYGLVIVDDYSRWTWVKFIKS 901
K K +F S L +H DL+G N T S+ G +Y L I+DD +R W+ F+KS
Sbjct: 479 KSKKVSFNVGKHTSEDA-LSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKS 537
Query: 902 KDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQ 961
KD + F + + ++++ K+ +R+D+G EF N F+ +C++HGI + TPQQ
Sbjct: 538 KDETFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQ 597
Query: 962 NGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGR 1021
NGV ER NRT+ E R +++++ + + FWAEA T+ Y+ NR + E++ R
Sbjct: 598 NGVAERMNRTIMEKVRCLLNKSGVEEVFWAEAAATAAYLINRSPASAINHNVPEEMWLNR 657
Query: 1022 RPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVEESIH 1081
+P + +FG Y+ + LK +A +G FLGY +K Y+V+ E S +
Sbjct: 658 KPGYKHLRKFGSIAYVHQDQGKLKP---RALKGFFLGYPAGTKGYKVWLLEEEKCVISRN 714
Query: 1082 VKFDD----REPGNKTPEQSESNAGTTDSEDASESDQPSDSEKHSEVESRPEAEITPEAE 1137
V F + R+ K + N T S + ++ S ++ + ++E E E
Sbjct: 715 VVFQESVVYRDLKVKEDDTDNLNQKETTSSEVEQNKFAEASGSGGVIQLQSDSEPITEGE 774
Query: 1138 SNSEAETSPVEQNENASEDVQDN---TQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHF 1194
+S++E VE +E E + T ++ + + + + P + F
Sbjct: 775 QSSDSEEE-VEYSEKTQETPKRTGLTTYKLARDRVRRNINPP---------------TRF 818
Query: 1195 RQEESLIGLLSIIE------PKTVEEALSD---DGWILAMQEELNQFQRNDVWDLIPKPF 1245
+E S+ L ++E P++ +EA+ + W +A +E++ +N WDL+ KP
Sbjct: 819 TEESSVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPK 878
Query: 1246 QKNIIGTKWVFRNKLNEKG-EVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLS 1304
+ IIG +W+F+ K G E TR KARLVA+GY+Q+EG+DY E FAPV + +IR+L+S
Sbjct: 879 DRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMS 938
Query: 1305 YAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRA 1364
++ + L QMDVK+ FL+G +EEE+Y++QP GF + V +LKKSLYGLKQ+PR
Sbjct: 939 LVVDKDLELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQ 998
Query: 1365 WYDRLSNFLIKNDFERGQVDTTLFGKTLKK-DILIVQIYVDDIIFGSTNASLCKEFSKLM 1423
W R F+ F R + D ++ K + + D + + +YVDD++ + + + +
Sbjct: 999 WNKRFDRFMSSQQFIRSEHDACVYVKHVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQL 1058
Query: 1424 QDEFEMSMMGELKFFLGIQINQSKEG--VYVHQTKYTKELLKKFKLEDCKVMNTPMHPTC 1481
EFEM MG LGI I + ++G + + Q Y +++L +F + K+ N P+
Sbjct: 1059 STEFEMKDMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHF 1118
Query: 1482 TLS---KEDTGTVVDQKLYRGMIGSLLY-LTASRPDILFSVCLCARFQSDPRESHLTAVK 1537
L+ +ED D Y +GS++Y + +RPD+ +++CL +R+ S P H AVK
Sbjct: 1119 KLAAVREEDECVDTDVVPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVK 1178
Query: 1538 RIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKR 1597
+ RYLKG +L L++ K D+ + G+CD++YA D R+S SG +G N +SW +
Sbjct: 1179 WVMRYLKGAQDLNLVFTKEKDFTVTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASL 1238
Query: 1598 QATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHS 1657
Q +AMST EAEYI+ A + +W+K L+D + + + I+CD+ +AICLSKN + H
Sbjct: 1239 QPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAICLSKNSVYHE 1298
Query: 1658 RAKHIEIKHHFIRDYVQKG 1676
R KHI+++ ++IRD V+ G
Sbjct: 1299 RTKHIDVRFNYIRDVVESG 1317
>At3g45520 copia-like polyprotein
Length = 1363
Score = 530 bits (1365), Expect = e-150
Identities = 321/1032 (31%), Positives = 544/1032 (52%), Gaps = 48/1032 (4%)
Query: 671 WYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSISINNV 725
W +D+GC HMT ++ + GG V+ G ++ G GT+ ++++ NV
Sbjct: 316 WIMDTGCIYHMTHKREWLEDFDEEAGGSVRMGNKSISRVKGVGTVRIVNDNGLTVTLQNV 375
Query: 726 WLVDGLKHNLLSISQFCDNGYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKINFSDLAD 785
+ + NLLS+ F G+ F N L K+ + +G+R + +Y ++ D
Sbjct: 376 RYIPDMDRNLLSLGTFEKAGHK--FESENGMLRIKSGNQVLLEGRRYDTLYILHGKPATD 433
Query: 786 QKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLV--KGLPNIDYHSDALCGACQKGK 843
+ + + ND +WH+RL H + + +S + K + K + +D D + G +K
Sbjct: 434 ESLA-VARANDDTVLWHRRLCHMSQKNMSLLIKKGFLDKKKVSMLDTCEDCIYGRAKK-- 490
Query: 844 IVKSTFKSKDIVSTSRPLELLHIDLFG-PVNTASLYGSKYGLVIVDDYSRWTWVKFIKSK 902
+ D T + LE +H DL+G P SL +Y + +DDY+R WV F+K+K
Sbjct: 491 -IGFNLAQHD---TKKKLEYVHSDLWGAPTVPMSLGNCQYFISFIDDYTRKVWVYFLKTK 546
Query: 903 DYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQN 962
D A E F S+ + ++++ ++ +R+D+G EF N F+ FCE+ G + TPQQN
Sbjct: 547 DEAFEKFVSWISLVENQSGERVKTLRTDNGLEFCNRMFDGFCEEKGFQRHRTCAYTPQQN 606
Query: 963 GVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRR 1022
GVVER NRT+ E R+M+ ++ L K FWAEA +T+ + N+ + + + + G+
Sbjct: 607 GVVERMNRTIMEKVRSMLCDSGLPKRFWAEATHTAVLLINKTPCSAINFEFPDKRWSGKA 666
Query: 1023 PNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVEESIHV 1082
P SY ++GC ++ K + +A++G+ +GY K Y+V+ E S +V
Sbjct: 667 PIYSYLRRYGCVTFVHTDGG---KLNLRAKKGVLIGYPSGVKGYKVWLIEEKKCVVSRNV 723
Query: 1083 KFDDREPGNKTPEQSESNAGTTDSEDASESDQPSDSEK-HSEVESRPEAEITPEAESNSE 1141
F + ++ E + D S D +++K +S + +A++TP A +
Sbjct: 724 SFQENAVYKDLMQRKEQVSCEEDDHAGSYIDLDLEADKDNSSGGEQSQAQVTP-ATRGAV 782
Query: 1142 AETSPVEQNENASE-DVQDN--TQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEE 1198
T P + ++ E DV + + +++ + + + P D + + E+
Sbjct: 783 TSTPPRYETDDIEETDVHQSPLSYHLVRDRERREIRAPRRF----DDEDYYAEALYTTED 838
Query: 1199 SLIGLLSIIEPKTVEEALSD---DGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWV 1255
+EP +EA+ D D W LAM EE+ +ND W + +P ++ IIG++W+
Sbjct: 839 G-----DAVEPADYKEAVRDENWDKWRLAMNEEIESQLKNDTWTTVTRPEKQRIIGSRWI 893
Query: 1256 FRNKLNEKG-EVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILY 1314
++ K G E R KARLVA+GY+Q+EG+DY E FAPV + +IR+LLS + L
Sbjct: 894 YKYKQGIPGVEEPRFKARLVAKGYAQREGVDYHEIFAPVVKHVSIRILLSIVAQENLELE 953
Query: 1315 QMDVKSAFLNGVIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLI 1374
Q+DVK+AFL+G ++E++Y+ P G E + + V L KSLYGLKQAPR W ++ ++++
Sbjct: 954 QLDVKTAFLHGELKEKIYMMPPEGCESLFKENEVCLLNKSLYGLKQAPRQWNEKFNHYMT 1013
Query: 1375 KNDFERGQVDTTLFGKTLKKD-ILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMG 1433
+ F+R D+ + K L D + + YVDD++ + N K + +FEM +G
Sbjct: 1014 EIGFKRSDYDSCAYTKKLSDDSTMYLLFYVDDMLVAANNMQAIDALKKELSIKFEMKDLG 1073
Query: 1434 ELKFFLGIQINQSKEG--VYVHQTKYTKELLKKFKLEDCKVMNTPM--HPTCTLSKEDTG 1489
K LGI+I +E +++ Q Y ++LK F + + K TP+ H + E+
Sbjct: 1074 AAKKILGIEIIIDREAGVLWLSQESYLNKVLKTFNMLESKPALTPLGAHLKMKSATEEKL 1133
Query: 1490 TVVDQKL----YRGMIGSLLY-LTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLK 1544
+ ++ + Y +GS++Y + +RPD+ + V + +RF S P + H VK + RY+K
Sbjct: 1134 STEEEYMNSVPYSSAVGSIMYAMIGTRPDLAYPVGVVSRFMSQPAKEHWLGVKWVLRYIK 1193
Query: 1545 GTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMS 1604
GT + L Y+++ D+ + G+CDADYA D +R+S +G LG N ISW S Q +A S
Sbjct: 1194 GTVDTRLCYKRNSDFSICGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQS 1253
Query: 1605 TAEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIEI 1664
+ E EY+S + +W+K L+D+ ++ I+CD+ +AI LSKN + H R KHI++
Sbjct: 1254 STECEYMSLTEAVKEAIWLKGLLKDFGYEQKNVEIFCDSQSAIALSKNNVHHERTKHIDV 1313
Query: 1665 KHHFIRDYVQKG 1676
K HFIR+ + G
Sbjct: 1314 KFHFIREIIADG 1325
Score = 57.4 bits (137), Expect = 7e-08
Identities = 67/320 (20%), Positives = 127/320 (38%), Gaps = 55/320 (17%)
Query: 34 KFNGDPEEFSWWKTNMYSFI--MGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKK 91
KF+G + ++ WK + + I +GL L + + + D E + D + +
Sbjct: 10 KFDGRGD-YTMWKEKLLAHIDMLGLSAVLRE--SETPMGKERDSEKSDEDEKEEREKMEA 66
Query: 92 LYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKAL----MLV 147
+K K R IV S+ K+ +++A AM +L ++ +KAL L
Sbjct: 67 FEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEAL-------DRLYMSKALPNRIYLK 119
Query: 148 HQYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIE 207
+ F+M ++ SIE F +V+ L+ L D +L SLP + ++
Sbjct: 120 QKLYSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLK 179
Query: 208 EAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKTSKSSKAYKASESEEES 267
+ LS++++ +++ E+ + S K ++ L K K +E+ S
Sbjct: 180 YSSGKTVLSLDEVAAAIYSRELEFGSVKKSIKGQAEGLYVKDK----------AENRGRS 229
Query: 268 PDRDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGGYKNSKKEDQKGCFNCKKPGHFIAD 327
+D +G K SK + ++GC+ C + GH +
Sbjct: 230 EQKD-----------------------------KGKGKRSKSKSKRGCWICGEDGHLKST 260
Query: 328 CPDLQKEKSKSKSKKSSFSS 347
CP+ K + K++ SS
Sbjct: 261 CPNKNKPQFKNQGSNKGESS 280
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 528 bits (1360), Expect = e-149
Identities = 335/1037 (32%), Positives = 543/1037 (52%), Gaps = 58/1037 (5%)
Query: 671 WYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIG--NS---SISINNV 725
W LD+GCS HMT ++ F GG V+ G ++ G GTI NS +I + NV
Sbjct: 309 WILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNSDGLTIVLTNV 368
Query: 726 WLVDGLKHNLLSISQFCDNGYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKINFSDLAD 785
+ + NLLS+ F GY F + L K + G+R + +Y +N+ +A
Sbjct: 369 RYIPDMDRNLLSLGTFEKAGYK--FESEDGILRIKAGNQVLLTGRRYDTLYLLNWKPVAS 426
Query: 786 QKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKG-LPNIDYHSDALCGACQKGKI 844
+ + + +D +WH+RL H + K ++ + KG L S +C C GK
Sbjct: 427 ESLAVVKRADDTV-LWHQRLCHMS----QKNMEILVRKGFLDKKKVSSLDVCEDCIYGKA 481
Query: 845 VKSTFKSKDIVSTSRPLELLHIDLFG-PVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKD 903
+ +F S T LE +H DL+G P SL +Y + I+DD++R WV F+K+KD
Sbjct: 482 KRKSF-SLAHHDTKEKLEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFMKTKD 540
Query: 904 YACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNG 963
A E F + ++++ + ++ +R+D+G EF N+ F+ FCE GI + TPQQNG
Sbjct: 541 EAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYTPQQNG 600
Query: 964 VVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRP 1023
V ER NRT+ E R+M+ ++ L K FWAEA +T+ + N+ + + + + G P
Sbjct: 601 VAERMNRTIMEKVRSMLSDSGLPKRFWAEATHTTVLLINKTPSSALNFEIPDKKWSGNPP 660
Query: 1024 NISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVEESIHVK 1083
SY ++GC ++ +T D K + +A++G+ +GY K Y+V+ + S ++
Sbjct: 661 VYSYLRRYGCVAFV-HTDD--GKLEPRAKKGVLIGYPVGVKGYKVWILDERKCVVSRNII 717
Query: 1084 FDDREPGNKTPEQSESNAGTTDSEDASESDQPSDSEKHSEVESRPEAEITPEAES-NSEA 1142
F + ++ E+ + T+ +D + S D E +V S + E+ + S
Sbjct: 718 FQENAVYKDLMQRQENVS--TEEDDQTGSYLEFDLEAERDVISGGDQEMVNTIPAPESPV 775
Query: 1143 ETSPVEQNENASEDVQDN----TQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEE 1198
++P Q+ N ED N + +++ + K + P D + + E+
Sbjct: 776 VSTPTTQDTNDDEDSDVNQSPLSYHLVRDRDKREIRAPRRF----DDEDYYAEALYTTED 831
Query: 1199 SLIGLLSIIEPKTVEEALSD---DGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWV 1255
+EP+ +A D D W LAM EE++ ++N+ W ++ +P + IIG +W+
Sbjct: 832 G-----EAVEPENYRKAKLDANFDKWKLAMDEEIDSQEKNNTWTIVTRPENQRIIGCRWI 886
Query: 1256 FRNKLNEKG-EVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILY 1314
F+ KL G E R KARLVA+GY+Q+EGIDY E FAPV + +IR+LLS + L
Sbjct: 887 FKYKLGILGVEEPRFKARLVAKGYAQKEGIDYHEIFAPVVKHVSIRVLLSIVAQEDLELE 946
Query: 1315 QMDVKSAFLNGVIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLI 1374
Q+DVK+AFL+G ++E++Y+ P G+E + + V L K+LYGLKQAP+ W ++ NF+
Sbjct: 947 QLDVKTAFLHGELKEKIYMSPPEGYESMFKANEVCLLNKALYGLKQAPKQWNEKFDNFMK 1006
Query: 1375 KNDFERGQVDTTLFGKTLKK-DILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMG 1433
+ F + D+ + K L ++ + IYVDDI+ S N + FEM +G
Sbjct: 1007 EICFVKSAYDSCAYTKVLPDGSVMYLLIYVDDILVASKNKEAITALKANLGMRFEMKDLG 1066
Query: 1434 ELKFFLGIQINQSKE-GV-YVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTV 1491
K LG++I + + GV ++ Q Y ++L+ + + + K TP+
Sbjct: 1067 AAKKILGMEIIRDRTLGVLWLSQEGYLNKILETYNMAEAKPAMTPLGAHFKFQ-----AA 1121
Query: 1492 VDQKL-----------YRGMIGSLLY-LTASRPDILFSVCLCARFQSDPRESHLTAVKRI 1539
+QKL Y +GS++Y + +RPD+ + V + +RF S P + H VK +
Sbjct: 1122 TEQKLIRDEDFMKSVPYSSAVGSIMYAMLGTRPDLAYPVGIISRFMSQPIKEHWLGVKWV 1181
Query: 1540 FRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQA 1599
RY+KGT L Y+KS + ++G+CDADYA D +R+S +G LG N ISW S Q
Sbjct: 1182 LRYIKGTLKTRLCYKKSSSFSIVGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQR 1241
Query: 1600 TIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRA 1659
+A ST E+EY+S + +W+K L+D+ S+ I+CD+ +AI LSKN + H R
Sbjct: 1242 VVAQSTTESEYMSLTEAVKEAIWLKGLLKDFGYEQKSVEIFCDSQSAIALSKNNVHHERT 1301
Query: 1660 KHIEIKHHFIRDYVQKG 1676
KHI++K+HFIR+ + G
Sbjct: 1302 KHIDVKYHFIREIISDG 1318
Score = 57.8 bits (138), Expect = 5e-08
Identities = 66/320 (20%), Positives = 126/320 (38%), Gaps = 55/320 (17%)
Query: 34 KFNGDPEEFSWWKTNMYSF--IMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKK 91
KF+G + ++ WK + + I+GL+ L + G LDE + ++ +
Sbjct: 10 KFDGRGD-YTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEK--FEA 66
Query: 92 LYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKAL--MLVHQ 149
L +K K R IV S+ K+ +STA AM +L K+ +KAL + +
Sbjct: 67 LEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLAL-------DKLYMSKALPNRIYPK 119
Query: 150 YEL--FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIE 207
+L F+M ++ S+E F +++ L+ + D +L +LP + ++
Sbjct: 120 QKLYSFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLK 179
Query: 208 EAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKTSKSSKAYKASESEEES 267
+ + L+++++ +++ E+ L + S K ++ L K K K +
Sbjct: 180 YSSGKSILTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKG------ 233
Query: 268 PDRDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGGYKNSKKEDQKGCFNCKKPGHFIAD 327
+G K K + + GC+ C + GHF +
Sbjct: 234 ---------------------------------KGKGKKGKSKKKPGCWTCGEEGHFRSS 260
Query: 328 CPDLQKEKSKSKSKKSSFSS 347
CP+ K + K SS
Sbjct: 261 CPNQNKPQFKQSQVVKGESS 280
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 526 bits (1356), Expect = e-149
Identities = 353/1116 (31%), Positives = 574/1116 (50%), Gaps = 81/1116 (7%)
Query: 597 KSQKIKILKRSEPVHQNLIRPESKIPKQKDQKNKAAT--ASDKTIPKGVKPEVLNDQKPL 654
K Q K ++R++ Q ES + K + N A A+D+T+ V + N+
Sbjct: 231 KKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLATDETLV--VTDSIANE---- 284
Query: 655 SIHPKVCIRAREKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGT 714
W LD+GCS HMT K F G VK G + + G G+
Sbjct: 285 ----------------WVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGS 328
Query: 715 I-----GNSSISINNVWLVDGLKHNLLSISQFCDNGYDVMFSKTNCTLVNKNDKSITFKG 769
I S + + +V + + NL+S+ D G F + L S KG
Sbjct: 329 IKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRG--CWFKSQDGILKIVKGCSTILKG 386
Query: 770 KRVENVYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNID 829
++ + +Y ++ + + + D+ +WH RLGH + K ++ + KG +
Sbjct: 387 QKRDTLYILD-GVTEEGESHSSAEVKDETALWHSRLGHMS----QKGMEILVKKGCLRRE 441
Query: 830 YHSDA-LCGACQKGKIVKSTFKSKDIVSTSRPLELLHIDLFG-PVNTASLYGSKYGLVIV 887
+ C C GK + +F V T L +H DL+G P N ASL S+Y + V
Sbjct: 442 VIKELEFCEDCVYGKQHRVSFAPAQHV-TKEKLAYVHSDLWGSPHNPASLGNSQYFISFV 500
Query: 888 DDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKH 947
DDYSR W+ F++ KD A E F + ++++ + K+ K+R+D+G E+ N FE FC++
Sbjct: 501 DDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEE 560
Query: 948 GILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIR 1007
GI+ + TPQQNG+ ER NRT+ + R+M+ + + K FWAEA +T+ Y+ NR
Sbjct: 561 GIVRHKTCAYTPQQNGIAERLNRTIMDKVRSMLSRSGMEKKFWAEAASTAVYLINRSPST 620
Query: 1008 PMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYR 1067
+ E + G P++S +FGC YI + K + ++++GIF Y E K Y+
Sbjct: 621 AINFDLPEEKWTGALPDLSSLRKFGCLAYIHADQG---KLNPRSKKGIFTSYPEGVKGYK 677
Query: 1068 VYNSETHCVEESIHVKFDDREPGNKTPEQSESNAGTTDSEDASESDQPSDSE-----KHS 1122
V+ E S +V F ++ S++ +D ED + +D E +
Sbjct: 678 VWVLEDKKCVISRNVIFREQVMFKDLKGDSQNTISESDLEDLRVNPDMNDQEFTDQGGAT 737
Query: 1123 EVESRP-EAEITPEAESNSEAETSPVEQNENASEDVQD-NTQQVIQPK----FKHKSSHP 1176
+ S P EA + NS + E E S+ V+D +T Q+++ + K +
Sbjct: 738 QDNSNPSEATTSHNPVLNSPTHSQDEESEEEDSDAVEDLSTYQLVRDRVRRTIKANPKYN 797
Query: 1177 EELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSD---DGWILAMQEELNQFQ 1233
E ++G +++ +++ EPK+ +EAL D + W AM+EE+
Sbjct: 798 ESNMVGF--------AYYSEDDGKP------EPKSYQEALLDPDWEKWNAAMKEEMVSMS 843
Query: 1234 RNDVWDLIPKPFQKNIIGTKWVFRNKLNEKG-EVTRNKARLVAQGYSQQEGIDYTETFAP 1292
+N WDL+ KP + +IG +WVF K G E R ARLVA+G++Q+EG+DY E F+P
Sbjct: 844 KNHTWDLVTKPEKVKLIGCRWVFTRKAGIPGVEAPRFIARLVAKGFTQKEGVDYNEIFSP 903
Query: 1293 VARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDIKHPDHVYKLK 1352
V + +IR LLS +++ + L QMDVK+AFL+G +EEE+Y+ QP GFE + + V LK
Sbjct: 904 VVKHVSIRYLLSMVVHYNMELQQMDVKTAFLHGFLEEEIYMAQPEGFEIKRGSNKVCLLK 963
Query: 1353 KSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFGKTLKKDILI-VQIYVDDIIFGST 1411
+SLYGLKQ+PR W R F+ + R D+ ++ K D I + +YVDD++ S
Sbjct: 964 RSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASA 1023
Query: 1412 NASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEG--VYVHQTKYTKELLKKFKLED 1469
N S E +L+ EFEM +G+ K LG++I++ ++ + + Q Y K++L+ F++++
Sbjct: 1024 NKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRDAGLLTLSQEGYVKKVLRSFQMDN 1083
Query: 1470 CKVMNTPMHPTCTLS----KEDTGTVVDQKL--YRGMIGSLLY-LTASRPDILFSVCLCA 1522
K ++TP+ L KE K+ Y IGS++Y + +RPD+ +S+ + +
Sbjct: 1084 AKPVSTPLGIHFKLKAATDKEYEEQFERMKIVPYANTIGSIMYSMIGTRPDLAYSLGVIS 1143
Query: 1523 RFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGN 1582
RF S P + H AVK + RY++GT L +RK D+ L G+CD+DY + R+S +G
Sbjct: 1144 RFMSKPLKDHWQAVKWVLRYMRGTEKKKLCFRKQEDFLLRGYCDSDYGSNFDTRRSITGY 1203
Query: 1583 CQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCD 1642
+G N ISW SK Q +A+S+ EAEY++ + LW+K + + + + ++ D
Sbjct: 1204 VFTVGGNTISWKSKLQKVVAISSTEAEYMALTEAVKEALWLKGFAAELGHSQDYVEVHSD 1263
Query: 1643 NTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGIL 1678
+ +AI L+KN + H R KHI+I+ HFIRD + G++
Sbjct: 1264 SQSAITLAKNSVHHERTKHIDIRLHFIRDIICAGLI 1299
Score = 32.0 bits (71), Expect = 3.2
Identities = 18/82 (21%), Positives = 42/82 (50%)
Query: 153 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 212
F+M++++ I+E F +V+ L L+ +L SLP+R+ V ++ +
Sbjct: 100 FKMQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVETMKYSNSR 159
Query: 213 NTLSVEDLVSSLKVHEMSLNEH 234
L ++D++ + + E L+++
Sbjct: 160 EKLRLDDVMVAARDKERELSQN 181
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 515 bits (1327), Expect = e-146
Identities = 333/1084 (30%), Positives = 562/1084 (51%), Gaps = 82/1084 (7%)
Query: 627 QKNKAATASDKTIPKGVKPEVLNDQKPLSIHPKVCIRAREKQRSWYLDSGCSRHMTGEKA 686
++NK + S++ V V D L + + A +W LD+GCS HMT K
Sbjct: 269 ERNKQGSTSERGEASTVTARV-TDAAALVVSRALLGFAEVTPDTWILDTGCSFHMTCRKD 327
Query: 687 LFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSISINNVWLVDGLKHNLLSISQF 741
+ G+V+ G + ++ G G + S+I + +V + + NL+S+
Sbjct: 328 WIIDFKETASGKVRMGNDTYSEVKGIGDVRIKNEDGSTILLTDVRYIPEMSKNLISLGTL 387
Query: 742 CDNGYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKINFSDLADQKVVCLLSMNDKKWVW 801
D G SK + KND ++ GK+ +Y + + LA + V + D+ +W
Sbjct: 388 EDKGC-WFESKKGILTIFKNDLTV-LTGKKESTLYFLQGTTLAGEANV-IDKEKDETSLW 444
Query: 802 HKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSTFKSKDIVSTSRPL 861
H RLGH + LQ++ ++D + GA K K K L
Sbjct: 445 HSRLGHIGAK------GLQVLVSKGHLDKNIMISFGAA------KHVTKDK--------L 484
Query: 862 ELLHIDLFGPVNTASLYGS-KYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEK 920
+ +H DL+G N G +Y + +DD++R TW+ FI++KD A F + TQI++++
Sbjct: 485 DYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWIYFIRTKDEAFSKFVEWKTQIENQQ 544
Query: 921 ELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMI 980
+ K+ + +D+G EF N+ F+ FC K G++ + TPQQNGV ER NRT+ R M+
Sbjct: 545 DKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAYTPQQNGVAERMNRTIMNKVRCML 604
Query: 981 HENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNT 1040
E+ L K FWAEA +T+ ++ N+ + E + G P+ +FG YI +
Sbjct: 605 SESGLGKQFWAEAASTAVFLINKSPSSSIEFDIPEEKWTGHPPDYKILKKFGSVAYIHSD 664
Query: 1041 KDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVEESIHVKFDDREPGNKTPEQSESN 1100
+ K + +A++GIFLGY + K ++V+ E S + F + N+ ++ + N
Sbjct: 665 QG---KLNPRAKKGIFLGYPDGVKRFKVWLLEDRKCVVSRDIVFQE----NQMYKELQKN 717
Query: 1101 AGTTDSEDASESDQPSDSEKHSEVESRPEAEITPEAESNSEAETSPVEQNENASEDVQDN 1160
D SE D+ + + +E + ++ + E+ SE +N++++
Sbjct: 718 -------DMSEEDKQLTEVERTLIELK---NLSADDENQSEG-------GDNSNQEQAST 760
Query: 1161 TQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFR-------QEESLIGLL-------SI 1206
T+ + K ++ ++ + + R R R +++SL+G +
Sbjct: 761 TRSASKDKQVEETDSDDDCLENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEV 820
Query: 1207 IEPKTVEEALSD---DGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNEK 1263
EP+T EEA+ + W A EE++ ++ND WD+I KP K +IG KW+F+ K
Sbjct: 821 YEPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIP 880
Query: 1264 G-EVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAF 1322
G E R KARLVA+G+SQ+EGIDY E F+PV + +IR LLS + + L Q+DVK+AF
Sbjct: 881 GVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAF 940
Query: 1323 LNGVIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQ 1382
L+G ++E + + QP G+ED + V LKKSLYGLKQ+PR W R +F+I + ++R +
Sbjct: 941 LHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQRSK 1000
Query: 1383 VDTTLFGKTLKKDILI-VQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGI 1441
+ ++ + L I + +YVDD++ S N ++ + + EFEM +G + LG+
Sbjct: 1001 YNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPARKILGM 1060
Query: 1442 QINQSKE-GVY-VHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRG 1499
+I +++E G+ + Q++Y +L+ F ++ KV TP+ L + T+ Y
Sbjct: 1061 EITRNREQGILDLSQSEYVAGVLRAFGMDQSKVSQTPLGAHFKLRAANEKTLARDAEYMK 1120
Query: 1500 M------IGSLLY-LTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLL 1552
+ IGS++Y + SRPD+ + V + +RF S P + H AVK + RY+KGT + L
Sbjct: 1121 LVPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWVMRYMKGTQDTCLR 1180
Query: 1553 YRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYIS 1612
++K +++ G+CD+DYA D R+S +G G N ISW S Q +A+ST EAEY++
Sbjct: 1181 FKKDDKFEIRGYCDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRVVALSTTEAEYMA 1240
Query: 1613 AASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDY 1672
A + +W++ + +++ + CD+ +AI LSKN + H R KHI++++HFIR+
Sbjct: 1241 LAEAVKEAIWLRGLAAEMGFEQDAVEVMCDSQSAIALSKNSVHHERTKHIDVRYHFIREK 1300
Query: 1673 VQKG 1676
+ G
Sbjct: 1301 IADG 1304
Score = 52.4 bits (124), Expect = 2e-06
Identities = 74/325 (22%), Positives = 122/325 (36%), Gaps = 65/325 (20%)
Query: 29 SGKAP--KFNGDPEEFSWWKT-----NMYSFIMGLDEELWDILEDGVDDLDLDEEGAAID 81
SG+A KF+GD + W + M + GL EE ++ED ++ +G D
Sbjct: 3 SGRAEVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEIS---DGGNQD 59
Query: 82 RRIHTPA--QKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVK 139
T K L +K K R I+ S+ K+ + TA M L F
Sbjct: 60 PETATSKLEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPN 119
Query: 140 EAKALMLVHQYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRW 199
++ Y +M ++ ++EE + F L+S L+ +K D +L SLP ++
Sbjct: 120 RIYLKQRLYGY---KMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQF 176
Query: 200 RPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKTSKSSKAYK 259
++ K TL +E++ S++ +SK + L + GK K++
Sbjct: 177 DQLKETLKYCK--TTLHLEEITSAI--------------RSKILELGASGKLLKNNSDGL 220
Query: 260 ASESEEESPDRDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGGYKNSKKEDQKG----C 315
+ S R +G KN + KG C
Sbjct: 221 FVQDRGRSETRG-----------------------------KGPNKNKSRSKSKGAGKTC 251
Query: 316 FNCKKPGHFIADCPDLQKEKSKSKS 340
+ C K GHF C + KE++K S
Sbjct: 252 WICGKEGHFKKQC-YVWKERNKQGS 275
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 509 bits (1310), Expect = e-144
Identities = 325/1042 (31%), Positives = 547/1042 (52%), Gaps = 69/1042 (6%)
Query: 671 WYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSISINNV 725
W +D+GCS HMT ++ F L GG V+ G K+ G GTI + + NV
Sbjct: 287 WVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVVRLTNV 346
Query: 726 WLVDGLKHNLLSISQFCDNGYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKINFSDLAD 785
+ + NLLS+ F +GY F N TL S+ +R +Y + + + +
Sbjct: 347 RYIPEMDRNLLSLGTFEKSGYS--FKLENGTLSIIAGDSVLLTVRRCYTLYLLQWRPVTE 404
Query: 786 QKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLV--KGLPNIDYHSDALCGACQKGK 843
+ + ++ D +WH+RLGH + + + + K L+ K + ++ D + G K K
Sbjct: 405 ESL-SVVKRQDDTILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCIYG---KAK 460
Query: 844 IVKSTFKSKDIVSTSRPLELLHIDLFG-PVNTASLYGSKYGLVIVDDYSRWTWVKFIKSK 902
+ D T LE +H DL+G P SL +Y + +DDY+R + F+K+K
Sbjct: 461 RIGFNLAQHD---TREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTK 517
Query: 903 DYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQN 962
D A + F + ++++ + +I +R+D+G EF N F+ FC + GIL + TPQQN
Sbjct: 518 DEAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQN 577
Query: 963 GVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRR 1022
GV ER NRTL E R+M+ ++ L K FWAEA +T+ + N+ + + + + G+
Sbjct: 578 GVAERMNRTLMEKVRSMLSDSGLPKKFWAEATHTTAILINKTPSSALNYEVPDKRWSGKS 637
Query: 1023 PNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVEESIHV 1082
P SY +FGC ++ +T D K + +A++GI +GY K Y+++ E S +V
Sbjct: 638 PIYSYLRRFGCIAFV-HTDD--GKLNPRAKKGILVGYPIGVKGYKIWLLEEKKCVVSRNV 694
Query: 1083 KFDDREPGNKTPEQSESNAGTTDSEDASESDQPSDSEKHSEVESRPEAEIT-----PEAE 1137
F +++ S S+DA + + + + +++ E IT P E
Sbjct: 695 IF----------QENASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVE 744
Query: 1138 SNSEAETSPVEQNENASEDVQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRS---HF 1194
+ S SP + SE V T +IQ + +L+ +D RRT F
Sbjct: 745 AQSPFNPSPAT-TQTYSEGVNSETD-IIQSPLSY------QLV---RDRDRRTIRAPVRF 793
Query: 1195 RQEESLIGLLSI------IEPKTVEEA---LSDDGWILAMQEELNQFQRNDVWDLIPKPF 1245
E+ L L IEP EA ++ + W LAM EE+ +N W ++ +P
Sbjct: 794 DDEDYLAEALYTTEDSGEIEPADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQ 853
Query: 1246 QKNIIGTKWVFRNKLNEKG-EVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLS 1304
+ +IG++W+++ KL G E R KARLVA+GY+Q++GIDY E FAPV + +IR+L+S
Sbjct: 854 HQKVIGSRWIYKFKLGIPGVEEGRFKARLVAKGYAQRKGIDYHEIFAPVVKHVSIRILMS 913
Query: 1305 YAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRA 1364
+ L Q+DVK+AFL+G ++E++Y+ P G+E++ D V L KSLYGLKQAP+
Sbjct: 914 IVAQEDLELEQLDVKTAFLHGELKEKIYMVPPEGYEEMFKEDEVCLLNKSLYGLKQAPKQ 973
Query: 1365 WYDRLSNFLIKNDFERGQVDTTLFGKTLKKDILI-VQIYVDDIIFGSTNASLCKEFSKLM 1423
W ++ + ++ + F R D+ + K L + + +YVDD++ + N + + +
Sbjct: 974 WNEKFNAYMSEIGFIRSLYDSCAYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEEL 1033
Query: 1424 QDEFEMSMMGELKFFLGIQI--NQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHP-- 1479
F+M +G K LG++I N+ + +++ Q Y ++L+ + + + K + TP+
Sbjct: 1034 SQRFDMKDLGAAKRILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAHL 1093
Query: 1480 ---TCTLSKEDTGTVVDQKL-YRGMIGSLLY-LTASRPDILFSVCLCARFQSDPRESHLT 1534
T+ K++ + + Y +GS++Y + +RPD+ + V + +R+ S P H
Sbjct: 1094 KMRAATVEKQEQDEDYMKSIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWL 1153
Query: 1535 AVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWA 1594
VK + RY+KG+ L Y++S D+K++G+CDAD+A + R+S +G LG + ISW
Sbjct: 1154 GVKWVLRYIKGSLGTKLQYKRSSDFKVVGYCDADHAACKDRRRSITGLVFTLGGSTISWK 1213
Query: 1595 SKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPI 1654
S +Q +A+ST EAEY+S + +WMK L+++ S+ I+CD+ +AI LSKN +
Sbjct: 1214 SGQQRVVALSTTEAEYMSLTEAVKEAVWMKGLLKEFGYEQKSVEIFCDSQSAIALSKNNV 1273
Query: 1655 LHSRAKHIEIKHHFIRDYVQKG 1676
H R KHI++++ +IRD + G
Sbjct: 1274 HHERTKHIDVRYQYIRDIIANG 1295
Score = 50.1 bits (118), Expect = 1e-05
Identities = 57/251 (22%), Positives = 108/251 (42%), Gaps = 20/251 (7%)
Query: 34 KFNGDPEEFSWWKTNMYSF--IMGLDEELW--DILEDGVDDLDLDEEGAAIDRRIHTPAQ 89
KF+G + ++ WK + + I+GL L D L + V ++ L EE + + +
Sbjct: 10 KFDGRGD-YTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEE----EEKEEVLRR 64
Query: 90 KKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKAL--MLV 147
+ L +K K R IV S+ K+ + +A AM L K+ +KAL +
Sbjct: 65 ELLEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVL-------DKLYMSKALPNRIY 117
Query: 148 HQYEL--FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTA 205
+ +L F+M ++ SIE F +++ L+ D +L SLP +
Sbjct: 118 QKQKLYSFKMSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDT 177
Query: 206 IEEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKTSKSSKAYKASESEE 265
++ TLS++++V+++ E+ L ++ S K ++ L K KT + + +
Sbjct: 178 LKYGLGRVTLSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRGNNNN 237
Query: 266 ESPDRDSDEDQ 276
R +
Sbjct: 238 NKKSRSKSRSK 248
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 504 bits (1298), Expect = e-142
Identities = 323/1015 (31%), Positives = 517/1015 (50%), Gaps = 73/1015 (7%)
Query: 711 GTGTIGNSSISINNVWLVDGLKHNLLSISQFCDNGYDVMFSKTNCTLV-NKNDKSITFKG 769
GT +G++ + I+ V+ V+ + +L+SI Q D V+ +V ++ + + G
Sbjct: 305 GTVRLGSNLVMIS-VFYVEEFQSDLISIGQLMDENRCVLQMSDRFLVVQDRTSRMVMGAG 363
Query: 770 KRVENVYKINFSDLADQKVVCLLSMNDKKW-VWHKRLGHANWRLISKISKLQLVKGLPNI 828
+RV + +++A V +K + +WH R+GH R++S I + +
Sbjct: 364 RRVGGTFHFRSTEIAASVTV----KEEKNYELWHSRMGHPAARVVSLIPESSVSVS---- 415
Query: 829 DYHSDALCGACQKGKIVKSTFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVD 888
H + C C + K +++F I T R EL++ DL+GP T S G++Y L I+D
Sbjct: 416 STHLNKACDVCHRAKQTRNSFPLS-INKTLRIFELIYCDLWGPYRTPSHTGARYFLTIID 474
Query: 889 DYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHG 948
DYSR W+ + K A +F + +KI VRSD+G EF F ++ G
Sbjct: 475 DYSRGVWLYLLNDKSEAPCHLKNFFAMTDRQFNVKIKTVRSDNGTEFLC--LTKFFQEQG 532
Query: 949 ILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRP 1008
++HE S TP++N VERK+R L +AR + + NL FW E V T+ Y+ NR
Sbjct: 533 VIHERSCVATPERNDRVERKHRHLLNVARALRFQANLPIQFWGECVLTAAYLINRTPSSV 592
Query: 1009 MLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRV 1068
+ + T YE ++P + FG CY N KF +++R +F+GY K +R+
Sbjct: 593 LNDSTPYERLHKKQPRFDHLRVFGSLCYAHNRNRGGDKFAERSRRCVFVGYPHGQKGWRL 652
Query: 1069 YNSETHCVEESIHVKFDDRE-------PGNKTPEQSES------------------NAGT 1103
++ E + S V F + E N E+ E+ NAG
Sbjct: 653 FDLEQNEFFVSRDVVFSELEFPFRISHEQNVIEEEEEALWAPIVDGLIEEEVHLGQNAGP 712
Query: 1104 TDSEDASESDQPSDSEKHSE--VESRPEAEITPEAESNSEAETSPVEQNENASEDVQDNT 1161
T S PS + SE S + E+ P +++ + +SP T
Sbjct: 713 TPPICVSSPISPSATSSRSEHSTSSPLDTEVVPTPATSTTSASSP-----------SSPT 761
Query: 1162 QQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTV-EEALSDDG 1220
P + K + + + + PRR + R + + L + TV +E+ S
Sbjct: 762 NLQFLPLSRAKPTTAQAVAPPAVPPPRRQST--RNKAPPVTLKDFVVNTTVCQESPSKLN 819
Query: 1221 WILAMQEELNQFQR----------------NDVWDLIPKPFQKNIIGTKWVFRNKLNEKG 1264
IL ++ + +R N W + P K IG++WV++ K N G
Sbjct: 820 SILYQLQKRDDTRRFSASHTTYVAIDAQEENHTWTIEDLPPGKRAIGSQWVYKVKHNSDG 879
Query: 1265 EVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLN 1324
V R KARLVA G Q+EG DY ETFAPVA++ +RL L A+ ++QMDV +AFL+
Sbjct: 880 SVERYKARLVALGNKQKEGEDYGETFAPVAKMATVRLFLDVAVKRNWEIHQMDVHNAFLH 939
Query: 1325 GVIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVD 1384
G + EEVY+K PPGFE HP+ V +L+K+LYGLKQAPR W+++L+ L + F++ D
Sbjct: 940 GDLREEVYMKLPPGFE-ASHPNKVCRLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLAD 998
Query: 1385 TTLFGKTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQIN 1444
+LF + + IYVDD+I + ++F + + F M +G LK+FLGI++
Sbjct: 999 YSLFTLVKGSVRIKILIYVDDLIITGNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVA 1058
Query: 1445 QSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSL 1504
+S G+Y+ Q KY +++ + L K N P+ L + + D + YR ++G L
Sbjct: 1059 RSTTGIYICQRKYALDIISETGLLGVKPANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRL 1118
Query: 1505 LYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGF 1564
+YL +R D+ FSV + ARF +PRE H A R+ RYLK G+ R+S D+++ G+
Sbjct: 1119 IYLAVTRLDLAFSVHILARFMQEPREDHWAAALRVVRYLKADPGQGVFLRRSGDFQITGW 1178
Query: 1565 CDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMK 1624
CD+D+AGD + R+S +G G++ ISW +K+Q T++ S+AEAEY + + ++LLW+K
Sbjct: 1179 CDSDWAGDPMSRRSVTGYFVQFGDSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLWLK 1238
Query: 1625 HQLEDYQI-NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGIL 1678
L + + + + CD+ +AI ++ NP+ H R KHIEI +HF+RD KG++
Sbjct: 1239 QLLFSLGVSHVQPMIMCCDSKSAIYIATNPVFHERTKHIEIDYHFVRDEFVKGVI 1293
>At4g27210 putative protein
Length = 1318
Score = 491 bits (1265), Expect = e-138
Identities = 310/1013 (30%), Positives = 501/1013 (48%), Gaps = 103/1013 (10%)
Query: 711 GTGTIGNSS--ISINNVWLVDGLKHNLLSISQFC-DNGYDVMFSKTNCTLVNKNDKSITF 767
G+ + +SS + + +V + + +LLS+S+ D V F + +K K +
Sbjct: 220 GSTNLASSSGTVPLTDVLVCPSITKSLLSMSKLTQDFPCTVEFEYDGVRVNDKATKKLLL 279
Query: 768 KGKRVENVYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPN 827
G + +Y + D Q + VWH+RLGH + +++
Sbjct: 280 MGSNRDGLYCLK-DDKQFQAFFSTRQRSASDEVWHRRLGHPHPQIL-------------- 324
Query: 828 IDYHSDALCGACQKGKIVKSTFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIV 887
+PLE +H DL+GP S+ G +Y V +
Sbjct: 325 -------------------------------QPLERVHCDLWGPTTITSVQGFRYYAVFI 353
Query: 888 DDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKH 947
D YSR++W+ +K K +F +F ++++ KI + D GGEF + F + H
Sbjct: 354 DHYSRFSWIYPLKLKSDFYNIFLAFHKLVENQLSQKISVFQCDGGGEFVSHKFLQHLQSH 413
Query: 948 GILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIR 1007
GI + S P TPQQNG+ ERK+R L E+ +M+ ++++ FW EA T+ ++ N +
Sbjct: 414 GIQQQLSCPHTPQQNGLAERKHRHLVELGLSMLFQSHVPHKFWVEAFFTANFLINLLPTS 473
Query: 1008 PMLEKTA-YELFKGRRPNISYFHQFGCTCYILNTKDYLK-KFDAKAQRGIFLGYSERSKA 1065
+ E + YE ++P+ + FG C+ +DY + KF+ + + +FLGY+E+ K
Sbjct: 474 ALKESISPYEKLYDKKPDYTSLRSFGSACFP-TLRDYAENKFNPCSLKCVFLGYNEKYKG 532
Query: 1066 YRVYNSETHCVEESIHVKFDDR-----------EPGNKTP------EQSESNAGTTDSED 1108
YR T + S HV FD+ P +TP S+S A +T +
Sbjct: 533 YRCLYPPTGRLYISRHVIFDESVYPFSHTYKHLHPQPRTPLLAAWLRSSDSPAPSTSTSP 592
Query: 1109 ASESDQ---------------------PSDSEKHSE---VESRPE--AEITPEAESNSEA 1142
+S S P S H+ + P+ +E T + +S S
Sbjct: 593 SSRSPLFTSADFPPLPQRKTPLLPTLVPISSVSHASNITTQQSPDFDSERTTDFDSASIG 652
Query: 1143 ETSPVEQNENASEDVQDNTQQV-IQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLI 1201
++S Q A D ++ QQ + H S++ ++ +K + + L
Sbjct: 653 DSSHSSQ---AGSDSEETIQQASVNVHQTHASTNVHPMVTRAKVGISKPNPRY---VFLS 706
Query: 1202 GLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLN 1261
+S EPKTV AL GW AM EE+ W L+P +++G+KWVFR KL+
Sbjct: 707 HKVSYPEPKTVTAALKHPGWTGAMTEEIGNCSETQTWSLVPYKSDMHVLGSKWVFRTKLH 766
Query: 1262 EKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSA 1321
G + + KAR+VA+G+ Q+EGIDY ET++PV R +RL+L A + QMDVK+A
Sbjct: 767 ADGTLNKLKARIVAKGFLQEEGIDYLETYSPVVRTPTVRLVLHLATALNWDIKQMDVKNA 826
Query: 1322 FLNGVIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERG 1381
FL+G ++E VY+ QP GF D PDHV L KS+YGLKQ+PRAW+D+ S FL++ F
Sbjct: 827 FLHGDLKETVYMTQPAGFVDPSKPDHVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCS 886
Query: 1382 QVDTTLFGKTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGI 1441
+ D +LF +++++ +YVDD++ ++ + EF M+ MG+L +FLGI
Sbjct: 887 KSDPSLFIYAHNNNLILLLLYVDDMVITGNSSQTLTSLLAALNKEFRMTDMGQLHYFLGI 946
Query: 1442 QINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMI 1501
Q+ + + G+++ Q KY ++LL +E C + TP+ D +R +
Sbjct: 947 QVQRQQNGLFMSQQKYAEDLLIAASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRSIA 1006
Query: 1502 GSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKL 1561
G L YLT +RPDI F+V + P S +KRI RY+KGT +G+ Y + L
Sbjct: 1007 GKLQYLTLTRPDIQFAVNFVCQKMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPTLL 1066
Query: 1562 IGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLL 1621
+ D+D+ + R+S G C F+G NL+SW+SK+ T++ S+ EAEY S + +++L
Sbjct: 1067 QAYSDSDWGNCKQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEIL 1126
Query: 1622 WMKHQLEDYQINANSIP-IYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYV 1673
W+ L + +I P ++CDN +A+ L+ NP H+R KH +I HF+R+ V
Sbjct: 1127 WLSTLLRELRIPLPDTPELFCDNLSAVYLTANPAFHARTKHFDIDFHFVRERV 1179
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.314 0.131 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,605,593
Number of Sequences: 26719
Number of extensions: 1765938
Number of successful extensions: 8504
Number of sequences better than 10.0: 480
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 294
Number of HSP's that attempted gapping in prelim test: 6550
Number of HSP's gapped (non-prelim): 1529
length of query: 1716
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1603
effective length of database: 8,299,349
effective search space: 13303856447
effective search space used: 13303856447
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Medicago: description of AC149496.5